Query 021772
Match_columns 307
No_of_seqs 169 out of 896
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.7E-55 2E-59 384.5 12.5 147 1-152 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.5E-54 5.2E-59 381.0 11.8 148 1-153 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 34.6 18 0.00061 27.0 1.8 28 3-30 36-64 (74)
4 3dct_B Nuclear receptor coacti 16.8 54 0.0018 18.7 1.1 13 11-23 3-15 (21)
5 2jv2_A Putative uncharacterize 10.5 1E+02 0.0036 23.1 1.5 29 13-41 26-54 (83)
6 2c4b_A Barnase mcoeeti fusion; 10.0 1.6E+02 0.0056 24.5 2.6 60 12-87 4-72 (143)
7 1cmb_A Met APO-repressor; DNA- 8.8 2.6E+02 0.009 21.7 3.2 38 10-51 50-88 (104)
8 3nr5_A MAF1, repressor of RNA 8.6 99 0.0034 26.3 0.8 34 34-67 119-154 (164)
9 3g1g_A GAG polyprotein, capsid 8.6 1.8E+02 0.006 22.4 2.1 21 10-30 62-82 (87)
10 4dox_A Coat protein; all helix 6.9 2E+02 0.0069 25.7 2.0 21 4-24 156-177 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.7e-55 Score=384.53 Aligned_cols=147 Identities=37% Similarity=0.748 Sum_probs=132.2
Q ss_pred CCCCCCceecCCHHHHHH-HhHHhhCCCCCCcceeeeccCCCCCCCCCCCcCccCCCCceEEEeecccccccCCcccccc
Q 021772 1 MDSLVGFRFHPTDEEIIL-LLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHSEIQSEEEVWYFFCEPYYKYAKSKRANRR 79 (307)
Q Consensus 1 m~LPpGfRF~PTDeELV~-YL~~Ki~g~plp~~~I~evDvY~~ePweLp~~~~~~~~e~~wYFFs~r~rk~~~G~R~~R~ 79 (307)
+.|||||||+|||||||. ||++|+.|.+++..+|+++|||++|||+||+.+..+ +.+||||+++++||++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 579999999999999999 999999999999999999999999999999988765 78999999999999999999999
Q ss_pred CCCceEEecCCCceEEeCCCCEEEeEEEEeeeecccCCCCCCccCeeEeEEeecCCCC----------CCCCeEEEEEEE
Q 021772 80 TKEGYWKKTGNGSKIKRKYSTEVIGTKKILSFLRDDTAAKKAKTEWVIHEIAVEDSPD----------YEKDFVVCRLER 149 (307)
Q Consensus 80 tg~G~Wk~tG~~k~I~~~~~g~vVG~KktL~Fy~g~r~~~g~kT~WvMhEY~l~~~~~----------~~~~~VLCRIyk 149 (307)
|++||||++|+++.|... |.+||+||+|+||.| +++++.||+|+||||+|..... ..++|||||||+
T Consensus 91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g-~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFYAG-KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCS--SSCCEEEEEEEEEES-STTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeC--CcEEEEEEEEEEecC-CCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999864 789999999999999 9999999999999999998643 157999999999
Q ss_pred eCC
Q 021772 150 KRD 152 (307)
Q Consensus 150 K~~ 152 (307)
|+.
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.5e-54 Score=380.96 Aligned_cols=148 Identities=39% Similarity=0.724 Sum_probs=129.3
Q ss_pred CCCCCCceecCCHHHHHH-HhHHhhCCCCCCcceeeeccCCCCCCCCCCCcCccCCCCceEEEeecccccccCCcccccc
Q 021772 1 MDSLVGFRFHPTDEEIIL-LLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHSEIQSEEEVWYFFCEPYYKYAKSKRANRR 79 (307)
Q Consensus 1 m~LPpGfRF~PTDeELV~-YL~~Ki~g~plp~~~I~evDvY~~ePweLp~~~~~~~~e~~wYFFs~r~rk~~~G~R~~R~ 79 (307)
+.|||||||+|||||||. ||++|+.|.+++..+|+++|||++|||+||+.+..+ +.+||||+++++||++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 479999999999999999 999999999999999999999999999999987665 88999999999999999999999
Q ss_pred CCCceEEecCCCceEEeCCCCEEEeEEEEeeeecccCCCCCCccCeeEeEEeecCCCC-----CCCCeEEEEEEEeCCC
Q 021772 80 TKEGYWKKTGNGSKIKRKYSTEVIGTKKILSFLRDDTAAKKAKTEWVIHEIAVEDSPD-----YEKDFVVCRLERKRDK 153 (307)
Q Consensus 80 tg~G~Wk~tG~~k~I~~~~~g~vVG~KktL~Fy~g~r~~~g~kT~WvMhEY~l~~~~~-----~~~~~VLCRIykK~~~ 153 (307)
|++||||++|+++.|... +.+||+||+|+||.| +++++.||+|+||||+|..... ..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g-~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTE--GQRVGIKKALVFYIG-KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEES-STTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEec--CcEEEEEEEEEEEcC-cCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999974 699999999999999 9999999999999999998742 2689999999999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=34.56 E-value=18 Score=27.05 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=24.0
Q ss_pred CCCCceecC-CHHHHHHHhHHhhCCCCCC
Q 021772 3 SLVGFRFHP-TDEEIILLLTLKRFDPGFS 30 (307)
Q Consensus 3 LPpGfRF~P-TDeELV~YL~~Ki~g~plp 30 (307)
.|.|+.|.. |++||-.||-.++....+.
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 467899998 9999999999999987654
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=16.82 E-value=54 Score=18.65 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=10.2
Q ss_pred CCHHHHHHHhHHh
Q 021772 11 PTDEEIILLLTLK 23 (307)
Q Consensus 11 PTDeELV~YL~~K 23 (307)
+.|.+|+.||.-|
T Consensus 3 ~kdhqllrylldk 15 (21)
T 3dct_B 3 SKDHQLLRYLLDK 15 (26)
T ss_pred hhHHHHHHHHHcc
Confidence 6788999988754
No 5
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=10.46 E-value=1e+02 Score=23.11 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHhHHhhCCCCCCcceeeeccCCC
Q 021772 13 DEEIILLLTLKRFDPGFSVRTIKEIDLYS 41 (307)
Q Consensus 13 DeELV~YL~~Ki~g~plp~~~I~evDvY~ 41 (307)
+.++..||++++.|+|+...-+..+++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccHHHHHHHHHCCCCccCCCEEEEeeCC
Confidence 35665599999999998763333356543
No 6
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=9.95 E-value=1.6e+02 Score=24.55 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=35.0
Q ss_pred CHHHHHH-HhHHhhCCCCCCcceeee--ccCCCCCCCC------CCCcCccCCCCceEEEeecccccccCCccccccCCC
Q 021772 12 TDEEIIL-LLTLKRFDPGFSVRTIKE--IDLYSFEPWE------LPWHSEIQSEEEVWYFFCEPYYKYAKSKRANRRTKE 82 (307)
Q Consensus 12 TDeELV~-YL~~Ki~g~plp~~~I~e--vDvY~~ePwe------Lp~~~~~~~~e~~wYFFs~r~rk~~~G~R~~R~tg~ 82 (307)
|+.+-|. ||.. ...||..+|.. ++--+.+|-+ +|++...+ .. |.-+++.-|. ..+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG----~v--F~NrE~~LP~-------~~~ 67 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGG----DI--FSNREGKLPG-------KSG 67 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEE----EE--ECCTTCCSCC-------CTT
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCC----ce--EecCCCcCCC-------CCC
Confidence 4455566 9887 45677777765 5666778854 56664432 22 5555443332 336
Q ss_pred ceEEe
Q 021772 83 GYWKK 87 (307)
Q Consensus 83 G~Wk~ 87 (307)
|+|+.
T Consensus 68 ~~y~E 72 (143)
T 2c4b_A 68 RTWRE 72 (143)
T ss_dssp CCEEE
T ss_pred CEEEE
Confidence 78864
No 7
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=8.77 E-value=2.6e+02 Score=21.65 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred cCCHHHHHH-HhHHhhCCCCCCcceeeeccCCCCCCCCCCCcC
Q 021772 10 HPTDEEIIL-LLTLKRFDPGFSVRTIKEIDLYSFEPWELPWHS 51 (307)
Q Consensus 10 ~PTDeELV~-YL~~Ki~g~plp~~~I~evDvY~~ePweLp~~~ 51 (307)
|-|-.||++ -...-..|+|||. +.|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 568889999 4445678999986 4688899999998763
No 8
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=8.62 E-value=99 Score=26.35 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=18.6
Q ss_pred eeeccCCCCCCCCC--CCcCccCCCCceEEEeeccc
Q 021772 34 IKEIDLYSFEPWEL--PWHSEIQSEEEVWYFFCEPY 67 (307)
Q Consensus 34 I~evDvY~~ePweL--p~~~~~~~~e~~wYFFs~r~ 67 (307)
+.++|||.+.|..- |-.....-=--.||||.++.
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKkl 154 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRL 154 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCc
Confidence 56789999999832 32110000024667776553
No 9
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=8.59 E-value=1.8e+02 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=13.3
Q ss_pred cCCHHHHHHHhHHhhCCCCCC
Q 021772 10 HPTDEEIILLLTLKRFDPGFS 30 (307)
Q Consensus 10 ~PTDeELV~YL~~Ki~g~plp 30 (307)
.|+.+|||.|+..|..-.++.
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~ 82 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLT 82 (87)
T ss_dssp CCSHHHHHHHHHHHHC-----
T ss_pred CCChHHHHHHHHHHhhcCCcc
Confidence 477899999888887766654
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.86 E-value=2e+02 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred CCCceecCCHHHHHH-HhHHhh
Q 021772 4 LVGFRFHPTDEEIIL-LLTLKR 24 (307)
Q Consensus 4 PpGfRF~PTDeELV~-YL~~Ki 24 (307)
+-|..+.||++|+|. -..+++
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 348999999999999 444443
Done!