BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021775
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/247 (85%), Positives = 226/247 (91%)
Query: 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKN 110
+TNIK+ VSQLIGRTPLV+LNKV+EGCGAY+AVKQEM QPTASIKDRPA AM+ DAE KN
Sbjct: 22 STNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKN 81
Query: 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170
LI+PGKTT+IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA+LILTDP
Sbjct: 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
AKGMGGTVKKA ELLE+TPNA MLQQFSNPANT+VHFETTGPEIWEDT GQVDIFVM
Sbjct: 142 AKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIG 201
Query: 231 XXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVME 290
QYLKS+NPNVKIYGVEP+ESN+LNGGKPGPH ITGNGVGFKPDILD+DVME
Sbjct: 202 SGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVME 261
Query: 291 KVLEVSS 297
KVLEVSS
Sbjct: 262 KVLEVSS 268
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/247 (85%), Positives = 225/247 (91%)
Query: 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKN 110
+TNIK+ VSQLIGRTPLV+LNKV+EGCGAY+AVKQEM QPTASI DRPA AM+ DAE KN
Sbjct: 22 STNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKN 81
Query: 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170
LI+PGKTT+IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA+LILTDP
Sbjct: 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
AKGMGGTVKKA ELLE+TPNA MLQQFSNPANT+VHFETTGPEIWEDT GQVDIFVM
Sbjct: 142 AKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIG 201
Query: 231 XXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVME 290
QYLKS+NPNVKIYGVEP+ESN+LNGGKPGPH ITGNGVGFKPDILD+DVME
Sbjct: 202 SGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVME 261
Query: 291 KVLEVSS 297
KVLEVSS
Sbjct: 262 KVLEVSS 268
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 307 bits (787), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 188/245 (76%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
NI +VSQLIG+TP+V+LN +++GC A IA K E+ +P S+KDR +M+ DAE K I
Sbjct: 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFI 171
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
SPGK+ ++EPTSGN GI +AF+AA +GY+++LTMP+ S+ERRV ++AFGA+L+LTDPAK
Sbjct: 172 SPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAK 231
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G V+KA+E+L++TP+A+MLQQF NPAN ++H+ETTGPEIW+DT G+VDIFV
Sbjct: 232 GMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTG 291
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
+++K +NP ++ GVEP ES+IL+GGKPGPH I G G GF P LD +M++V
Sbjct: 292 GTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351
Query: 293 LEVSS 297
+ +SS
Sbjct: 352 IAISS 356
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 184/247 (74%)
Query: 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKN 110
A+ I +DV++LIG TPLV+LN V+EGC +A K EM +P +S+KDR +M+ DAE K
Sbjct: 2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKG 61
Query: 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170
LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+ S ERR+ + AFG +L+LTDP
Sbjct: 62 LIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
AKGM G + KA+E+L TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV
Sbjct: 122 AKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIG 181
Query: 231 XXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVME 290
+YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D+++
Sbjct: 182 TGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLID 241
Query: 291 KVLEVSS 297
+V++VSS
Sbjct: 242 EVVQVSS 248
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 303 bits (777), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 183/246 (74%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
+ I +DV++LIG TPLV+LN V+EGC +A K EM +P +S+KDR +M+ DAE K L
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
I PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+ S ERR+ + AFG +L+LTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 172 KGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXX 231
KGM G + KA+E+L TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 232 XXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEK 291
+YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D++++
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240
Query: 292 VLEVSS 297
V++VSS
Sbjct: 241 VVQVSS 246
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 303 bits (776), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 183/247 (74%)
Query: 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKN 110
A+ I +DV++LIG TPLV+LN V+EGC +A K EM +P +S+ DR +M+ DAE K
Sbjct: 2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKG 61
Query: 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170
LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+ S ERR+ + AFG +L+LTDP
Sbjct: 62 LIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
AKGM G + KA+E+L TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV
Sbjct: 122 AKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIG 181
Query: 231 XXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVME 290
+YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D+++
Sbjct: 182 TGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLID 241
Query: 291 KVLEVSS 297
+V++VSS
Sbjct: 242 EVVQVSS 248
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 158/245 (64%), Gaps = 1/245 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
+I D++QLIGRTPLV L +V++G A I K E F P S+KDR VAML+ AE LI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
P T I+EPTSGN GI++A + A +GY+ VLTMP SLERR+ +RA+GA+LILT A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G + KA+EL ++ F+ QQF NPAN +H TT E+W DT G+VDI V
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
Q +K + P+ + VEPA S +L+GG+ GPH I G G GF P +LD D+++++
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 293 LEVSS 297
+ V +
Sbjct: 244 ITVGN 248
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 157/245 (64%), Gaps = 1/245 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
+I D++QLIGRTPLV L +V++G A I K E F P S+ DR VAML+ AE LI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
P T I+EPTSGN GI++A + A +GY+ VLTMP SLERR+ +RA+GA+LILT A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G + KA+EL ++ F+ QQF NPAN +H TT E+W DT G+VDI V
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
Q +K + P+ + VEPA S +L+GG+ GPH I G G GF P +LD D+++++
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 293 LEVSS 297
+ V +
Sbjct: 244 ITVGN 248
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
I +++QLIG TPLV L +V++G A + K E F P SIKDR VAM++ AE LI
Sbjct: 6 TIAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLI 65
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
P T I+EPTSGN GI++A ++A +GYK VLTMP S+ERR+ +RA+GA+L+LT A+
Sbjct: 66 KP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAE 124
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G + KA+EL ++ F+ QQF NPAN VH TT E+W DT G+VDIFV
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
Q +K + P+ + VEPA S +L+GG+ GPH I G G GF P +LD+ ++++V
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEV 244
Query: 293 LEVSS 297
+ V +
Sbjct: 245 ITVGN 249
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
I +++QLIG TPLV L +V++G A + K E F P SIKDR VAM++ AE LI
Sbjct: 6 TIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLI 65
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
P T I+EPTSGN GI++A ++A +GYK VLTMP S+ERR+ +RA+GA+L+LT A+
Sbjct: 66 KP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAE 124
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G + KA+EL ++ F+ QQF NPAN VH TT E+W DT G+VDIFV
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
Q +K + P+ + VEPA S +L+GG+ GPH I G G GF P +LD+ ++++V
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEV 244
Query: 293 LEVSS 297
+ V +
Sbjct: 245 ITVGN 249
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 152/240 (63%), Gaps = 2/240 (0%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+++LIG TP V LN++ + A + +K E P +S+KDR A+AM+E AE + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
I+EPTSGN GI +A +AA KGYK VL MP SLERR +RA+GA+L+LT A+GM G
Sbjct: 68 -IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
+ KA+EL+ FM QQF N AN +H TTG EI E Q+D FV
Sbjct: 127 IAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 238 XXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297
+ L+ PN+KIY VEPA+S +L+GGKPGPH I G G GF PDILD + + V+ V++
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTT 245
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 154/244 (63%), Gaps = 1/244 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
N+ + + QLIG+TP ++LNK++ A + +K E P AS+ DR A+ + AE + +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKL 68
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
PGK+ ++E +SGN G+S+A + A++GYK+++TMP SLERR +R FGA++ILT A
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G V A++++ + PNA + QF+ N +H ETTGPEIWE T VD F+
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
+ LK + +I VEP ES +L+GGKPGPH I G G GF PD+LD ++++V
Sbjct: 189 GTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEV 248
Query: 293 LEVS 296
L V+
Sbjct: 249 LCVA 252
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 153/239 (64%), Gaps = 2/239 (0%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK- 116
V IG+TP+V L KV E A + VK E P SIKDRPA M++DAE + ++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
I+EPTSGN GI +A +AA +GY+++LTMP+ S ER+ ++AFGA+L+LTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXX 236
++A L E AFM QF NPAN R H+ETTGPE++E G++D FV
Sbjct: 123 AREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 237 XXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
+YLK + P+VK+ VEPA SN+L+GGK G H G G GF P+ LD+ +++ V++V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV 240
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 153/244 (62%), Gaps = 1/244 (0%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
N+ + + QLIG+TP ++LNK++ A + +K E P AS+KDR A+ + AE + +
Sbjct: 31 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 89
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
PGK+ ++E +SGN G+S+A + A++GYK+++TMP SLERR +R FGA++ILT A
Sbjct: 90 IPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 149
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
GM G V A++++ + PNA + QF+ N +H ETTGPEIWE T VD F+
Sbjct: 150 GMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 209
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
+ LK + +I VEP ES +L+GGKPG H I G G GF PD+LD ++++V
Sbjct: 210 GTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEV 269
Query: 293 LEVS 296
V+
Sbjct: 270 FCVA 273
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 159/263 (60%), Gaps = 16/263 (6%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
+ I D S IG TPLV LN++ G I K E P+ S+K R M+ DAE + +
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ PG ++EPT+GN GI++A++AA +GYK+ LTMP S+ERR ++A GA+L+LT+ A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 172 KGMGGTVKKAQELLESTPNAF-MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
KGM G ++KA+E++ S P + +LQQFSNPAN +H +TTGPEIWEDT GQVD+F+
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 231 XXXXXXXXXQYLKSQNPNVKI--YGVEPAESNILNGG------KPGPHLITGNGVGFKPD 282
+Y+K + VEP +S ++ KPGPH I G G GF P
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 283 ILDMDVMEKVLEVSSIANAQTIT 305
LD+ +++KV+ I N + I+
Sbjct: 237 NLDLKLIDKVV---GITNEEAIS 256
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 158/263 (60%), Gaps = 16/263 (6%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
+ I D S IG TPLV LN++ G I K E P+ S+ R M+ DAE + +
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ PG ++EPT+GN GI++A++AA +GYK+ LTMP S+ERR ++A GA+L+LT+ A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 172 KGMGGTVKKAQELLESTPNAF-MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXX 230
KGM G ++KA+E++ S P + +LQQFSNPAN +H +TTGPEIWEDT GQVD+F+
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 231 XXXXXXXXXQYLKSQNPNVKI--YGVEPAESNILNGG------KPGPHLITGNGVGFKPD 282
+Y+K + VEP +S ++ KPGPH I G G GF P
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 283 ILDMDVMEKVLEVSSIANAQTIT 305
LD+ +++KV+ I N + I+
Sbjct: 237 NLDLKLIDKVV---GITNEEAIS 256
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 143/237 (60%), Gaps = 9/237 (3%)
Query: 60 QLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTI 119
+LIG TP+V L+ + + I +K E P S+KDRPA+ M+ DAE + L+ K I
Sbjct: 4 RLIGSTPIVRLDSID----SRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGI 56
Query: 120 IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVK 179
+EPTSGNMGI++A + A +G++++LTMP S+ERR ++ GA+L+LT GM G V+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 180 KAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXX 239
KA E+ T A ML QF NP N H TTGPEI + Q+D FV
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 240 QYLKSQNPN-VKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
+ LK N VKI VEPA+S +L+GG+PG H I G G GF P ILD V+++V+ V
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITV 232
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 143/237 (60%), Gaps = 9/237 (3%)
Query: 60 QLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTI 119
+LIG TP+V L+ + + I +K E P S+KDRPA+ M+ DAE + L+ K I
Sbjct: 16 RLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGI 68
Query: 120 IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVK 179
+EPTSGNMGI++A + A +G++++LTMP S+ERR ++ GA+L+LT GM G V+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 180 KAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXX 239
KA E+ T A ML QF NP N H TTGPEI + Q+D FV
Sbjct: 129 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 240 QYLKSQNPN-VKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
+ LK N VKI VEPA+S +L+GG+PG H I G G GF P ILD V+++V+ V
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITV 244
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 144/252 (57%), Gaps = 11/252 (4%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I D S IG TPLV L G + VK E P+ S+ R M+ AE ++
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
GK I++ TSGN GI++A++AA +GYK+ LTMP SLER+ + G +L+LT+ AKG
Sbjct: 61 KGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 174 MGGTVKKAQELLESTPNAF-MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
M G + KA+E++ S P+ + ML+QF NPAN ++H ETTGPEIW+DT G+VD+ V
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 233 XXXXXXXQYLKSQ-NPNVKIYGVEPAESNILNGG------KPGPHLITGNGVGFKPDILD 285
+ +K + VEP ES +++ KPGPH I G G GF P LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 286 MDVMEKVLEVSS 297
+ ++++V V S
Sbjct: 240 LSIIDRVETVDS 251
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKVSEG----CGAYIAVKQEMFQPTASIKDRPAVAMLED 105
P I ++ + IG TPLV L+ V+E G I VK E F P +S+KDR ++
Sbjct: 8 PRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQ 67
Query: 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165
A + PG IIE TSGN GI++ A+ GY++ + MPS S+ER++ M+AFGA+L
Sbjct: 68 AIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAEL 126
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNA-FMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
ILT+ KGM G +++ ++++ P F+ QF NP NT H T EIWEDT G+VDI
Sbjct: 127 ILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDI 185
Query: 225 FVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDIL 284
V + LK + +KI VEP ES +L G GPH I G G GF PDI
Sbjct: 186 VVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIY 245
Query: 285 DMDVMEKVLEVSS 297
+ +++++ + +
Sbjct: 246 KKEFVDEIIPIKT 258
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKVSEG----CGAYIAVKQEMFQPTASIKDRPAVAMLED 105
P I ++ + IG TPLV L+ V+E G I VK E F P +S+KDR ++
Sbjct: 9 PRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQ 68
Query: 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165
A + PG IIE TSGN GI++ A+ GY++ + MPS S+ER++ M+AFGA+L
Sbjct: 69 AIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAEL 127
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNA-FMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
ILT+ KGM G +++ ++++ P F+ QF NP NT H T EIWEDT G+VDI
Sbjct: 128 ILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDI 186
Query: 225 FVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDIL 284
V + LK + +KI VEP ES +L G GPH I G G GF PDI
Sbjct: 187 VVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIY 246
Query: 285 DMDVMEKVLEVSS 297
+ +++++ + +
Sbjct: 247 KKEFVDEIIPIKT 259
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 9/238 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q IG TPLV L ++ G+ I VK E P S+KDR A++M+ +AE + I PG
Sbjct: 4 LEQTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 64 -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
A + E +L QF+NP N H+ TTGPEIW T G++ FV
Sbjct: 123 RDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITG 181
Query: 238 XXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
++L+ Q V I G++P E + + G + P + P I + ++++VL++
Sbjct: 182 VSRFLREQEKPVTIVGLQPEEGSSIPGIRRWP-------AEYMPGIFNASLVDEVLDI 232
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 9/238 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q IG TPLV L ++ G+ + +K E P S+KDR A++M+ +AE + I PG
Sbjct: 4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 64 -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
A E + + +L QF+NP N H+ TTGPEIW+ T G++ FV
Sbjct: 123 RDLALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 238 XXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
++++ Q+ V I G++P E + + G + P + P I + ++++VL++
Sbjct: 182 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDI 232
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 9/238 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q IG TPLV L ++ G+ + +K E P S+ DR A++M+ +AE + I PG
Sbjct: 4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDV 63
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 64 -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
A E + + +L QF+NP N + H+ TTGPEIW+ T G++ FV
Sbjct: 123 RDLALE-MANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 238 XXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
++++ Q+ V I G++P E + + G + P + P I + ++++VL++
Sbjct: 182 VSEFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDI 232
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 134/238 (56%), Gaps = 9/238 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q IG TPLV L ++ G+ + +K E P S+ DR A++M+ +AE + I PG
Sbjct: 4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDV 63
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 64 -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
A E + + +L QF+NP N H+ TTGPEIW+ T G++ FV
Sbjct: 123 RDLALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 238 XXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
++++ Q+ V I G++P E + + G + P + P I + ++++VL++
Sbjct: 182 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDI 232
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 16/246 (6%)
Query: 60 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
Q +G TPLV L ++S +G + K E PT SIKDRPAV M+E AE L+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
PG TI+EPTSGN GIS+A A +KGY+++ MP TS+ERR + +GA +I +
Sbjct: 71 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
G V A+EL + P+ ML Q+ NPANT H+ TGPE+ D + ++ FV
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAGLGTT 188
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
++L+ NVKI EP G + + GF P++ D +++
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYGE-------GVYALRNMDEGFVPELYDPEILTAR 241
Query: 293 LEVSSI 298
V ++
Sbjct: 242 YSVGAV 247
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 60 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
Q +G TPLV L ++S +G + K E PT SIKDRPAV M+E AE L+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
PG TI+EPTSGN GIS+A A +KGY+++ MP TS+ERR + +GA +I +
Sbjct: 69 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
G V A+EL + P+ ML Q+ NPANT H+ TGPE+ D + ++ FV
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAGLGTT 186
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
++L+ NV I EP G + + GF P++ D +++
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEPRYGE-------GVYALRNMDEGFVPELYDPEILTAR 239
Query: 293 LEVSSI 298
V ++
Sbjct: 240 YSVGAV 245
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 60 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
Q +G TPLV L ++S +G + K E PT SI DRPAV M+E AE L+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
PG TI+EPTSGN GIS+A A +KGY+++ MP TS+ERR + +GA +I +
Sbjct: 72 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXX 232
G V A+EL + P+ ML Q+ NPANT H+ TGPE+ D + ++ FV
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAGLGTT 189
Query: 233 XXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
++L+ NVKI EP G + + GF P++ D +++
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEPRYGE-------GVYALRNMDEGFVPELYDPEILTAR 242
Query: 293 LEVSSI 298
V ++
Sbjct: 243 YSVGAV 248
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 25/260 (9%)
Query: 46 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAML 103
PK LP D+ + IG TP+V +NK+ + G + K E F S+KDR ++ M+
Sbjct: 31 PKILP------DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMI 84
Query: 104 EDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA 163
EDAE + PG T IIEPTSGN GI +A AA++GY+ ++ MP S E+ +RA GA
Sbjct: 85 EDAERDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGA 143
Query: 164 DLILT-------DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216
+++ T P +G A L PN+ +L Q+ N +N H++TT EI +
Sbjct: 144 EIVRTPTNARFDSPESHVG----VAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQ 199
Query: 217 DTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP-----AESNILNGGKPGPHL 271
G++D+ V + LK + P +I GV+P AE LN + +
Sbjct: 200 QCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYE 259
Query: 272 ITGNGVGFKPDILDMDVMEK 291
+ G G F P +LD V++K
Sbjct: 260 VEGIGYDFIPTVLDRTVVDK 279
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 134/263 (50%), Gaps = 25/263 (9%)
Query: 46 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAML 103
PK LP D+ + IG TP+V +NK+ + G + K E F S+KDR ++ M+
Sbjct: 96 PKILP------DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMI 149
Query: 104 EDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA 163
EDAE + PG T IIEPTSGN GI +A AA++GY+ ++ MP S E+ +RA GA
Sbjct: 150 EDAERDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGA 208
Query: 164 DLILT-------DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216
+++ T P +G A L PN+ +L Q+ N +N H++TT EI +
Sbjct: 209 EIVRTPTNARFDSPESHVG----VAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQ 264
Query: 217 DTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP-----AESNILNGGKPGPHL 271
G++D+ V + LK + P +I GV+P AE LN + +
Sbjct: 265 QCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYE 324
Query: 272 ITGNGVGFKPDILDMDVMEKVLE 294
+ G G F P +LD V++K +
Sbjct: 325 VEGIGYDFIPTVLDRTVVDKWFK 347
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 127/252 (50%), Gaps = 14/252 (5%)
Query: 54 IKRDVSQLIGRTPLVFLNKV--SEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
I ++ ++IG TPLV LN + S+G + K E P S+KDR M++DAE + L
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ PG TIIEPTSGN GI +A A+KGYK ++ MP S E+ +R GA +I T
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 172 KGMG---GTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMX 228
G + AQ+L TPN+ +L Q+ N N H++ T EI +VD+ V+
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 229 XXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNI-----LNGGKPGPHLITGNGVGFKPDI 283
+ +K Q P+ +I GV+P S + LN + + G G F P +
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTV 288
Query: 284 LD---MDVMEKV 292
D +DV K+
Sbjct: 289 FDDTVVDVWTKI 300
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQP-TASIKDRPAVAMLEDAENKNLISPGKTTIIEPT 123
TPLV +++ G + +K E + P + S+KDRPAV ++ + + G + + + T
Sbjct: 97 TPLV-RSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADAT 152
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQE 183
S N G++++ +A + GY+ + +P ++ R GA +I+ A TV
Sbjct: 153 SSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP---STVHLLPR 209
Query: 184 LLESTPNAFMLQ--QFSNPANTRVHFETTGPEIW-EDTMGQVDI--FVMXXXXXXXXXXX 238
+++ + N + QF N AN H T EI+ + G + +
Sbjct: 210 VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAA 269
Query: 239 XQYLKSQNPNVKIYGVEPAESNILNG 264
YL+S +P+++ V+PA+ + + G
Sbjct: 270 AFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 13/206 (6%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQP-TASIKDRPAVAMLEDAENKNLISPGKTTIIEPT 123
TPLV +++ G + +K E + P + S+ DRPAV ++ + + G + + + T
Sbjct: 97 TPLV-RSRLQLPNGVRVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADAT 152
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQE 183
S N G++++ +A + GY+ + +P ++ R GA +I+ A TV
Sbjct: 153 SSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP---STVHLLPR 209
Query: 184 LLESTPNAFMLQ--QFSNPANTRVHFETTGPEIW-EDTMGQVDI--FVMXXXXXXXXXXX 238
+++ + N + QF N AN H T EI+ + G + +
Sbjct: 210 VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAA 269
Query: 239 XQYLKSQNPNVKIYGVEPAESNILNG 264
YL+S +P+++ V+PA+ + + G
Sbjct: 270 AFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTT-IIEPT 123
TPL + K+S I VK+E QP S K R A AM+ L K +I +
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMM-----AGLTEEQKAHGVITAS 86
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167
+GN +AF +A G K ++ MP+ T+ + +R FG +++L
Sbjct: 87 AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 6/204 (2%)
Query: 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK 116
++ + TP++ + +++ G + K E+FQ T S K R A+ + L K
Sbjct: 18 NIQDSVHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTLEGKPK 77
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
++ +SGN G ++ + A ++G + +P +++ ++A+GA ++ ++P+
Sbjct: 78 A-VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESRE 136
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXX 236
V AQ +++ T ++ PA T E+ + + VD V+
Sbjct: 137 NV--AQRIIQET-EGILVHPNQEPAVIAGQ-GTIALEVL-NQVPLVDALVVPVGGGGMVA 191
Query: 237 XXXQYLKSQNPNVKIYGVEPAESN 260
+K+ P+VK+Y EP+ ++
Sbjct: 192 GIAITIKTLKPSVKVYAAEPSNAD 215
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV----AMLEDAENKNLISPGKT 117
I TP++ + +++ G + K E+FQ T S K R A+ +++ DA +
Sbjct: 23 IHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERK-----PK 77
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
++ +SGN G ++ + A ++G + +P +++ ++A+GA ++ +P+
Sbjct: 78 AVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESREN 137
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
V A+ + E T M+ PA T E+ + + VD V+
Sbjct: 138 V--AKRVTEET-EGIMVHPNQEPAVIAGQ-GTIALEVL-NQVPLVDALVVPVGGGGMLAG 192
Query: 238 XXQYLKSQNPNVKIYGVEPAESN 260
+K+ P+VK+Y EP+ ++
Sbjct: 193 IAITVKALKPSVKVYAAEPSNAD 215
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 105 DAENKNLISP------GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM 158
D + L+SP + +I ++GN+G+S+ M+A G+K+ + M + ++ +
Sbjct: 143 DDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKL 202
Query: 159 RAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF 207
R+ G ++ + G+ V++ ++ +S PN F F + N+R F
Sbjct: 203 RSHGVTVVEYEQDYGV--AVEEGRKAAQSDPNCF----FIDDENSRTLF 245
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 105 DAENKNLISP------GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM 158
D + L+SP + +I ++GN+G+S+ M+A G+K+ + M + ++ +
Sbjct: 141 DDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKL 200
Query: 159 RAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF 207
R+ G ++ + G+ V++ ++ +S PN F F + N+R F
Sbjct: 201 RSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNCF----FIDDENSRTLF 243
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV----AMLEDAENKNLISPGKT 117
I TP++ + +++ G + K E+FQ T S R A+ +++ DA +
Sbjct: 23 IHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNAVRSLVPDALERK-----PK 77
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
++ +SGN G ++ + A ++G + +P +++ ++A+GA ++ +P+
Sbjct: 78 AVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS 131
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPG 115
R ++ RTPL+ + G + +K E Q T S K R A++ EN
Sbjct: 12 RRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPK----- 66
Query: 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG 175
++ +SGN +A+ A + G K ++ MP S ++ RA+GA+++ G
Sbjct: 67 --GLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV------DRG 118
Query: 176 GTVKKAQEL---LESTPNAFMLQQFSNP 200
T K +E+ L+ ++ F +P
Sbjct: 119 VTAKNREEVARALQEETGYALIHPFDDP 146
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 15/204 (7%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNL 111
K+ ++ I +T + N SE C I +K E Q T S R A ++ L +AE +
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEKRK- 89
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
++ ++GN ++ AM G + MP + + A+++L
Sbjct: 90 ------GVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVL--HG 141
Query: 172 KGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXX 231
T+ K E++E+ F + + +P T G EI ED + VD ++
Sbjct: 142 DNFNDTIAKVSEIVETEGRIF-IPPYDDP-KVIAGQGTIGLEIMED-LYDVDNVIVPIGG 198
Query: 232 XXXXXXXXQYLKSQNPNVKIYGVE 255
+KS NP +K+ GV+
Sbjct: 199 GGLIAGIAIAIKSINPTIKVIGVQ 222
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 27 SSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQE 86
+ QP P +++ RL P + V+ L G TPL+ +S+ G I +K E
Sbjct: 8 THQPWPGVIAAYRDRL-------PVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE 60
Query: 87 MFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTM 146
PT S KDR + DA ++ G+ ++ ++GN S A AA G + +
Sbjct: 61 GLNPTGSFKDRGMTMAVTDA-----LAHGQRAVLCASTGNTSASAAAYAARAGITCAVLI 115
Query: 147 P 147
P
Sbjct: 116 P 116
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 88/237 (37%), Gaps = 25/237 (10%)
Query: 24 RLVSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAV 83
L+ ++P DS Q L D+ + V + +PL K+S+ G +
Sbjct: 28 ELIVNKPTGGDSDELFQYLVDI--------LASPVYDVAIESPLELAEKLSDRLGVNFYI 79
Query: 84 KQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMV 143
K+E Q S R A M+ + + L +I ++GN +A
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAGQRLNCVAK 135
Query: 144 LTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQ----ELLESTPNAFMLQQFSN 199
+ MP+ T + +RA G D++L G T +AQ EL E + + F +
Sbjct: 136 IVMPTTTPQIKIDAVRALGGDVVL------YGKTFDEAQTHALELSEKDGLKY-IPPFDD 188
Query: 200 PANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP 256
P + T G EI + + + + K PN KI GVEP
Sbjct: 189 PGVIKGQ-GTIGTEINRQ-LKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEP 243
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 105 DAENKNLISP------GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM 158
D + L+SP + +I ++GN+G+S+ +A G+K+ + + ++ +
Sbjct: 141 DDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGIXSACIGFKVTVHXSADARAWKKAKL 200
Query: 159 RAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF 207
R+ G ++ + G+ V++ ++ +S PN F F + N+R F
Sbjct: 201 RSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNCF----FIDDENSRTLF 243
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 9/203 (4%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ + +TP++ + V++ A + K E FQ + K R A+ L + K
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE----AQRKA 75
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
++ +SGN ++A A + G + MP + + +G +I+ D K
Sbjct: 76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKD--DR 133
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXX 237
K A+E+ E ++ + +P + T E++E+ +G +D +
Sbjct: 134 EKMAKEISERE-GLTIIPPYDHP-HVLAGQGTAAKELFEE-VGPLDALFVCLGGGGLLSG 190
Query: 238 XXQYLKSQNPNVKIYGVEPAESN 260
+ PN ++YGVEP N
Sbjct: 191 SALAARHFAPNCEVYGVEPEAGN 213
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168
KN I K T T GN G +A+ A G V+ MP ++ ER + GA+ I+T
Sbjct: 106 KNAIGE-KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT 164
Query: 169 D 169
D
Sbjct: 165 D 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168
KN I K T T GN G +A+ A G V+ MP ++ ER + GA+ I+T
Sbjct: 106 KNAIGE-KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT 164
Query: 169 D 169
D
Sbjct: 165 D 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168
KN I K T T GN G +A+ A G V+ MP ++ ER + GA+ I+T
Sbjct: 106 KNAIGE-KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT 164
Query: 169 D 169
D
Sbjct: 165 D 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168
KN I K T T GN G +A+ A G V+ P ++ ER + GA+ I+T
Sbjct: 106 KNAIGE-KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVT 164
Query: 169 D 169
D
Sbjct: 165 D 165
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 13/157 (8%)
Query: 40 QRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEG--CGAYIAVKQEMFQPTASIKDR 97
+R R+L LP + +S L G TPL+ L E G + K E PT S KDR
Sbjct: 7 ERYRNL---LPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDR 63
Query: 98 PAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRV 156
+ A + G + ++GN S A AA G ++ +P+ Y +L +
Sbjct: 64 GMTLAVSKA-----VEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVA 118
Query: 157 TMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 193
GA ++ + ++ Q+L E+ P A +
Sbjct: 119 QSLVHGARIVQVE--GNFDDALRLTQKLTEAFPVALV 153
>pdb|2VC5|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|3UF9|A Chain A, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|B Chain B, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|C Chain C, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|D Chain D, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
Length = 314
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISP-------GK 116
R PLV + + + + + + + +++ + ED E +N ++ G
Sbjct: 2 RIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGV 61
Query: 117 TTIIEPTSGNMGISMAFM-----------AAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165
TI++PT +G + FM A G + + +P Y L R + ADL
Sbjct: 62 KTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYF-LNRSIDEI---ADL 117
Query: 166 ILTDPAKGMGGTVKKA 181
+ D +G+ GT+ KA
Sbjct: 118 FIHDIKEGIQGTLNKA 133
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 42 LRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPA 99
++ K LP V+ G TPL+ + ++ G I +K E PT S KDR
Sbjct: 8 IKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGM 67
Query: 100 VAMLEDAENKNLISPGKTTIIEPTSGN 126
+ A + GK +I ++GN
Sbjct: 68 TLAISKA-----VEAGKRAVICASTGN 89
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 261 ILNGGKPGPHLITGN-GVGFKPDILDMDVMEKVLEVSSI 298
++NGG PGP LITGN G F+ +++D +L+ +SI
Sbjct: 26 VVNGGTPGP-LITGNMGDRFQLNVIDNLTNHTMLKSTSI 63
>pdb|1PWE|A Chain A, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|B Chain B, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|C Chain C, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|D Chain D, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|E Chain E, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|F Chain F, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWH|A Chain A, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|B Chain B, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|C Chain C, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|D Chain D, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
Length = 327
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 27/157 (17%)
Query: 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPT 123
+TPL +S+ G + +K + QP+ S K R + L + K G + +
Sbjct: 10 KTPLRDSMALSKVAGTSVFLKMDSSQPSGSFKIR-GIGHLCKMKAKQ----GCKHFVCSS 64
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSYT---SLERRVTMRAFGADLILTDPAKGMGGTVKK 180
+GN G++ A+ A G + +PS T ++ER K G TV+
Sbjct: 65 AGNAGMATAYAARRLGLPATIVVPSTTPALTIERL----------------KNEGATVEV 108
Query: 181 AQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWE 216
E+L+ + +NP + F+ P IWE
Sbjct: 109 VGEMLDEAIQLAKALEKNNPGWVYISPFDD--PLIWE 143
>pdb|2J9O|A Chain A, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|B Chain B, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|C Chain C, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|D Chain D, Structure Of Pbp-A, L158e Mutant
pdb|2JBF|A Chain A, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex
With Penicillin-G.
pdb|2JBF|B Chain B, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex
With Penicillin-G.
pdb|2JBF|C Chain C, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex
With Penicillin-G.
pdb|2JBF|D Chain D, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex
With Penicillin-G
Length = 298
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 45 LPKDLPATNIKRDVSQLIGRTP-----LVFLNKVSEGCGAYIAVKQEMFQPTAS 93
LP + P TN+++ + QL+ R P L F N S GA + V + P AS
Sbjct: 11 LPPERPLTNLQQQIQQLVSRQPNLTAGLYFFNLDS---GASLNVGGDQVFPAAS 61
>pdb|2J7V|A Chain A, Structure Of Pbp-A
pdb|2J7V|B Chain B, Structure Of Pbp-A
pdb|2J7V|C Chain C, Structure Of Pbp-A
pdb|2J7V|D Chain D, Structure Of Pbp-A
pdb|2J8Y|A Chain A, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|B Chain B, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|C Chain C, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|D Chain D, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
Length = 298
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 45 LPKDLPATNIKRDVSQLIGRTP-----LVFLNKVSEGCGAYIAVKQEMFQPTAS 93
LP + P TN+++ + QL+ R P L F N S GA + V + P AS
Sbjct: 11 LPPERPLTNLQQQIQQLVSRQPNLTAGLYFFNLDS---GASLNVGGDQVFPAAS 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,333,287
Number of Sequences: 62578
Number of extensions: 317382
Number of successful extensions: 895
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 61
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)