Query 021775
Match_columns 307
No_of_seqs 268 out of 1729
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07591 threonine synthase; V 100.0 8.5E-61 1.8E-65 460.1 24.3 292 6-306 19-347 (421)
2 PRK08197 threonine synthase; V 100.0 1.4E-60 3E-65 455.9 24.0 292 6-306 8-337 (394)
3 COG0031 CysK Cysteine synthase 100.0 1.8E-59 4E-64 423.9 27.6 247 57-305 4-252 (300)
4 PLN03013 cysteine synthase 100.0 2.9E-59 6.3E-64 444.4 29.8 253 54-306 113-365 (429)
5 PLN02556 cysteine synthase/L-3 100.0 1.9E-58 4.1E-63 435.8 31.6 261 46-306 41-301 (368)
6 PLN02565 cysteine synthase 100.0 1.6E-58 3.5E-63 430.0 30.2 251 56-306 7-257 (322)
7 PLN02569 threonine synthase 100.0 1.5E-58 3.2E-63 448.7 26.7 295 6-306 50-396 (484)
8 PRK08329 threonine synthase; V 100.0 3.5E-58 7.6E-63 432.3 26.2 276 6-306 2-301 (347)
9 PRK06450 threonine synthase; V 100.0 3E-58 6.6E-63 430.4 25.3 263 6-306 4-299 (338)
10 PRK06260 threonine synthase; V 100.0 2.1E-58 4.6E-63 441.2 22.8 281 6-306 4-324 (397)
11 PRK05638 threonine synthase; V 100.0 3.3E-57 7.2E-62 438.3 26.2 283 6-306 2-313 (442)
12 PLN00011 cysteine synthase 100.0 4.1E-56 8.8E-61 414.7 29.6 250 57-306 10-259 (323)
13 TIGR01136 cysKM cysteine synth 100.0 2E-55 4.3E-60 406.3 29.6 247 59-306 2-248 (299)
14 TIGR01139 cysK cysteine syntha 100.0 4.9E-55 1.1E-59 403.5 28.9 246 59-306 2-248 (298)
15 PRK11761 cysM cysteine synthas 100.0 4.6E-55 1E-59 402.9 27.9 242 56-306 4-245 (296)
16 COG1171 IlvA Threonine dehydra 100.0 1.3E-55 2.7E-60 405.6 20.8 248 52-306 13-273 (347)
17 TIGR01138 cysM cysteine syntha 100.0 6.2E-54 1.4E-58 394.4 28.2 240 58-306 2-241 (290)
18 cd01561 CBS_like CBS_like: Thi 100.0 1.4E-53 3E-58 392.6 29.8 243 63-306 1-245 (291)
19 PRK10717 cysteine synthase A; 100.0 1.5E-53 3.2E-58 398.9 29.2 251 55-306 4-267 (330)
20 PLN02356 phosphateglycerate ki 100.0 1.7E-53 3.7E-58 404.8 28.6 250 56-306 45-352 (423)
21 PRK08526 threonine dehydratase 100.0 1E-53 2.2E-58 408.3 22.6 246 52-306 8-265 (403)
22 PRK06382 threonine dehydratase 100.0 2.3E-53 4.9E-58 407.5 24.9 245 52-305 13-269 (406)
23 PLN02970 serine racemase 100.0 3.5E-53 7.6E-58 395.7 23.6 246 52-306 15-271 (328)
24 PRK12483 threonine dehydratase 100.0 5.8E-53 1.3E-57 412.1 25.8 242 57-306 30-283 (521)
25 PRK06352 threonine synthase; V 100.0 1.9E-53 4.2E-58 400.6 20.9 251 46-306 10-274 (351)
26 PRK07476 eutB threonine dehydr 100.0 5.9E-53 1.3E-57 393.4 23.1 246 52-306 7-266 (322)
27 TIGR02991 ectoine_eutB ectoine 100.0 1.2E-52 2.5E-57 390.4 24.8 246 52-306 7-266 (317)
28 PRK08198 threonine dehydratase 100.0 8.4E-53 1.8E-57 403.8 24.2 245 53-306 11-267 (404)
29 KOG1252 Cystathionine beta-syn 100.0 7.4E-54 1.6E-58 385.9 15.5 251 55-305 43-298 (362)
30 PRK08638 threonine dehydratase 100.0 1.7E-52 3.8E-57 391.2 24.5 245 52-306 15-272 (333)
31 TIGR03844 cysteate_syn cysteat 100.0 9.1E-53 2E-57 400.6 23.0 280 6-306 3-336 (398)
32 cd06447 D-Ser-dehyd D-Serine d 100.0 4.1E-52 8.9E-57 395.2 25.3 243 61-306 49-348 (404)
33 PLN02550 threonine dehydratase 100.0 3.3E-52 7E-57 409.3 25.3 242 57-306 102-355 (591)
34 TIGR02079 THD1 threonine dehyd 100.0 2.3E-52 5E-57 400.4 23.6 246 53-306 5-265 (409)
35 PRK06110 hypothetical protein; 100.0 3.5E-52 7.6E-57 388.3 23.4 246 52-306 9-266 (322)
36 PRK07334 threonine dehydratase 100.0 2E-52 4.3E-57 400.7 21.7 246 52-306 11-266 (403)
37 cd06448 L-Ser-dehyd Serine deh 100.0 6.8E-52 1.5E-56 385.1 24.2 239 64-306 1-254 (316)
38 TIGR01137 cysta_beta cystathio 100.0 1.6E-51 3.4E-56 400.7 27.8 248 57-306 4-260 (454)
39 PRK08639 threonine dehydratase 100.0 4.8E-52 1E-56 399.7 23.4 249 52-306 13-276 (420)
40 PRK02991 D-serine dehydratase; 100.0 9.4E-52 2E-56 397.1 25.1 247 57-306 68-371 (441)
41 TIGR01127 ilvA_1Cterm threonin 100.0 5.5E-52 1.2E-56 395.3 23.0 233 65-306 1-245 (380)
42 PRK08813 threonine dehydratase 100.0 1E-51 2.2E-56 386.1 24.3 237 51-306 26-273 (349)
43 TIGR01124 ilvA_2Cterm threonin 100.0 1.3E-51 2.9E-56 402.5 25.5 242 57-306 10-263 (499)
44 PRK06721 threonine synthase; R 100.0 1.7E-51 3.6E-56 387.8 24.8 249 47-306 11-274 (352)
45 PRK07048 serine/threonine dehy 100.0 1.2E-51 2.7E-56 384.5 23.2 246 52-306 12-269 (321)
46 PRK07409 threonine synthase; V 100.0 1.9E-51 4.1E-56 387.8 24.2 249 47-306 14-278 (353)
47 PRK06608 threonine dehydratase 100.0 3.5E-51 7.7E-56 383.1 24.7 246 52-306 11-268 (338)
48 PRK06815 hypothetical protein; 100.0 4.1E-51 9E-56 380.3 23.3 246 52-306 8-266 (317)
49 PRK09224 threonine dehydratase 100.0 7.3E-51 1.6E-55 398.6 25.8 242 57-306 13-266 (504)
50 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.1E-50 2.3E-55 388.4 26.0 245 59-306 65-366 (431)
51 PRK08246 threonine dehydratase 100.0 1.4E-50 3.1E-55 375.4 24.6 241 51-306 10-262 (310)
52 cd01563 Thr-synth_1 Threonine 100.0 1.5E-50 3.3E-55 377.7 23.8 249 47-306 6-278 (324)
53 cd01562 Thr-dehyd Threonine de 100.0 1.5E-50 3.2E-55 374.4 22.2 246 52-306 5-262 (304)
54 KOG1250 Threonine/serine dehyd 100.0 2.6E-50 5.7E-55 368.3 21.0 244 54-305 56-311 (457)
55 PRK06381 threonine synthase; V 100.0 3.6E-49 7.9E-54 367.7 24.3 238 60-306 11-277 (319)
56 KOG1251 Serine racemase [Signa 100.0 3.4E-50 7.4E-55 347.0 15.4 249 49-306 10-270 (323)
57 PRK08206 diaminopropionate amm 100.0 1.7E-48 3.8E-53 372.3 24.2 251 52-306 30-327 (399)
58 TIGR00260 thrC threonine synth 100.0 2.7E-48 5.8E-53 363.1 21.3 249 47-306 6-280 (328)
59 TIGR01747 diampropi_NH3ly diam 100.0 5.2E-47 1.1E-51 358.9 23.6 246 56-306 15-308 (376)
60 cd00640 Trp-synth-beta_II Tryp 100.0 1.2E-45 2.7E-50 331.4 26.8 203 65-306 1-204 (244)
61 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.2E-46 1.4E-50 353.7 23.4 243 60-306 37-327 (396)
62 TIGR01415 trpB_rel pyridoxal-p 100.0 2E-45 4.4E-50 351.8 26.2 262 36-306 39-361 (419)
63 COG0498 ThrC Threonine synthas 100.0 2.2E-46 4.7E-51 354.2 18.0 289 6-306 6-330 (411)
64 PRK12391 tryptophan synthase s 100.0 9.5E-45 2.1E-49 347.7 27.7 265 36-306 49-370 (427)
65 KOG1481 Cysteine synthase [Ami 100.0 7.5E-45 1.6E-49 319.1 17.1 249 57-306 42-318 (391)
66 PRK13028 tryptophan synthase s 100.0 1.6E-43 3.4E-48 336.3 26.9 244 58-306 55-345 (402)
67 TIGR00263 trpB tryptophan synt 100.0 1.2E-43 2.7E-48 337.6 25.1 244 58-306 43-333 (385)
68 PRK04346 tryptophan synthase s 100.0 1.3E-43 2.8E-48 336.4 24.9 244 58-306 51-341 (397)
69 cd06446 Trp-synth_B Tryptophan 100.0 1.8E-43 3.8E-48 334.8 24.7 243 58-306 27-317 (365)
70 PRK03910 D-cysteine desulfhydr 100.0 2.5E-44 5.4E-49 336.7 18.3 245 56-306 7-275 (331)
71 TIGR01275 ACC_deam_rel pyridox 100.0 3.8E-44 8.2E-49 332.8 19.3 239 61-306 4-258 (311)
72 PLN02618 tryptophan synthase, 100.0 6.6E-43 1.4E-47 332.2 25.9 246 56-306 57-354 (410)
73 PF00291 PALP: Pyridoxal-phosp 100.0 1.4E-43 3.1E-48 327.3 18.4 237 58-306 1-263 (306)
74 PRK12390 1-aminocyclopropane-1 100.0 2E-43 4.3E-48 331.4 18.3 245 56-306 7-281 (337)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 3.6E-43 7.8E-48 329.6 19.2 245 56-306 6-280 (337)
76 cd06449 ACCD Aminocyclopropane 100.0 3.7E-43 8E-48 325.6 18.5 236 65-306 1-264 (307)
77 PRK13802 bifunctional indole-3 100.0 5.8E-42 1.3E-46 342.2 26.8 244 58-306 319-617 (695)
78 PRK13803 bifunctional phosphor 100.0 4.2E-40 9E-45 328.9 25.0 244 58-306 264-553 (610)
79 PRK14045 1-aminocyclopropane-1 100.0 1.1E-40 2.3E-45 311.8 18.7 244 55-306 12-273 (329)
80 COG0133 TrpB Tryptophan syntha 100.0 2.2E-28 4.7E-33 219.1 19.4 244 58-306 49-338 (396)
81 PRK09225 threonine synthase; V 100.0 3.1E-28 6.6E-33 235.3 21.8 223 64-306 88-373 (462)
82 cd01560 Thr-synth_2 Threonine 100.0 5.3E-27 1.2E-31 226.8 22.2 224 65-305 88-375 (460)
83 COG2515 Acd 1-aminocyclopropan 100.0 1.7E-27 3.6E-32 212.9 14.4 247 54-306 5-269 (323)
84 COG1350 Predicted alternative 99.9 3.6E-26 7.9E-31 205.2 18.5 262 38-306 51-371 (432)
85 KOG1395 Tryptophan synthase be 99.9 1.1E-23 2.4E-28 190.7 16.4 243 58-305 115-405 (477)
86 COG3048 DsdA D-serine dehydrat 99.8 6.2E-19 1.4E-23 157.5 15.1 244 58-304 72-372 (443)
87 PF03808 Glyco_tran_WecB: Glyc 90.9 1.5 3.3E-05 37.0 8.3 120 127-254 12-133 (172)
88 PF05368 NmrA: NmrA-like famil 89.7 7.1 0.00015 34.0 11.9 98 119-226 2-99 (233)
89 cd06533 Glyco_transf_WecG_TagA 88.8 2.5 5.4E-05 35.7 8.0 119 128-254 11-131 (171)
90 TIGR03201 dearomat_had 6-hydro 87.8 16 0.00034 34.1 13.5 58 107-168 159-216 (349)
91 cd08230 glucose_DH Glucose deh 87.3 4.4 9.5E-05 37.9 9.4 53 113-166 171-223 (355)
92 PF00107 ADH_zinc_N: Zinc-bind 87.2 6 0.00013 30.9 8.9 89 128-258 3-92 (130)
93 COG0604 Qor NADPH:quinone redu 87.0 7.2 0.00016 36.5 10.6 58 108-168 136-193 (326)
94 PF01041 DegT_DnrJ_EryC1: DegT 86.1 1.8 4E-05 40.9 6.2 89 116-204 40-130 (363)
95 cd08294 leukotriene_B4_DH_like 85.8 13 0.00027 34.0 11.5 59 108-169 137-195 (329)
96 TIGR03366 HpnZ_proposed putati 85.3 6.5 0.00014 35.5 9.2 53 112-167 118-170 (280)
97 KOG0022 Alcohol dehydrogenase, 84.2 26 0.00056 32.9 12.3 114 110-260 188-301 (375)
98 cd01075 NAD_bind_Leu_Phe_Val_D 84.0 13 0.00027 32.3 10.0 68 96-166 6-76 (200)
99 PRK12743 oxidoreductase; Provi 83.8 13 0.00028 32.8 10.4 54 116-169 3-58 (256)
100 TIGR00670 asp_carb_tr aspartat 83.3 6.8 0.00015 36.3 8.4 62 107-170 143-209 (301)
101 TIGR02819 fdhA_non_GSH formald 83.2 16 0.00035 34.9 11.4 55 108-165 179-233 (393)
102 PRK03562 glutathione-regulated 81.9 28 0.0006 35.7 13.0 51 117-170 401-451 (621)
103 PF01210 NAD_Gly3P_dh_N: NAD-d 81.7 2.9 6.3E-05 34.6 5.0 41 119-162 2-42 (157)
104 PRK09424 pntA NAD(P) transhydr 81.7 39 0.00084 33.8 13.5 53 113-169 163-215 (509)
105 PRK13656 trans-2-enoyl-CoA red 81.5 47 0.001 32.1 13.5 57 87-146 14-73 (398)
106 TIGR01064 pyruv_kin pyruvate k 81.4 35 0.00075 33.8 13.1 123 130-259 261-407 (473)
107 COG1063 Tdh Threonine dehydrog 80.7 51 0.0011 31.0 14.5 50 118-169 171-221 (350)
108 COG1064 AdhP Zn-dependent alco 80.6 11 0.00023 35.6 8.7 60 106-169 158-217 (339)
109 cd08281 liver_ADH_like1 Zinc-d 79.9 21 0.00045 33.6 10.7 57 108-167 185-241 (371)
110 TIGR02825 B4_12hDH leukotriene 79.8 24 0.00052 32.3 10.9 58 108-168 132-189 (325)
111 cd08295 double_bond_reductase_ 79.8 27 0.00058 32.3 11.3 57 108-167 145-202 (338)
112 TIGR00696 wecB_tagA_cpsF bacte 79.4 16 0.00035 31.0 8.8 118 128-254 13-132 (177)
113 PRK10669 putative cation:proto 79.3 43 0.00093 33.7 13.3 50 117-169 418-467 (558)
114 PRK03659 glutathione-regulated 79.1 46 0.001 33.9 13.5 96 117-254 401-497 (601)
115 TIGR03451 mycoS_dep_FDH mycoth 78.7 23 0.00049 33.1 10.5 58 107-167 169-226 (358)
116 PRK14030 glutamate dehydrogena 78.6 14 0.0003 36.3 9.0 52 95-147 207-259 (445)
117 cd08285 NADP_ADH NADP(H)-depen 78.1 57 0.0012 30.1 14.0 57 107-166 159-215 (351)
118 KOG0024 Sorbitol dehydrogenase 78.1 22 0.00048 33.4 9.7 62 105-169 160-221 (354)
119 PRK09880 L-idonate 5-dehydroge 78.0 22 0.00048 33.0 10.2 53 112-167 167-219 (343)
120 PF02826 2-Hacid_dh_C: D-isome 78.0 5.4 0.00012 33.7 5.5 115 117-256 37-153 (178)
121 TIGR02822 adh_fam_2 zinc-bindi 78.0 13 0.00027 34.6 8.5 57 107-167 158-214 (329)
122 COG2260 Predicted Zn-ribbon RN 77.9 1 2.2E-05 31.0 0.7 25 1-25 1-32 (59)
123 cd08256 Zn_ADH2 Alcohol dehydr 77.7 33 0.00072 31.7 11.3 57 108-167 168-224 (350)
124 PRK08643 acetoin reductase; Va 77.5 38 0.00083 29.6 11.2 32 116-147 3-34 (256)
125 PF00070 Pyr_redox: Pyridine n 77.2 22 0.00048 25.4 7.9 49 119-167 2-59 (80)
126 PRK07478 short chain dehydroge 77.2 34 0.00075 29.9 10.8 53 116-168 7-60 (254)
127 cd08233 butanediol_DH_like (2R 77.1 35 0.00076 31.6 11.3 57 108-167 166-222 (351)
128 PLN03154 putative allyl alcoho 76.8 36 0.00079 31.8 11.3 58 108-168 152-210 (348)
129 cd08293 PTGR2 Prostaglandin re 75.5 41 0.0009 30.9 11.3 59 108-169 146-208 (345)
130 cd08274 MDR9 Medium chain dehy 75.4 28 0.00061 32.0 10.1 57 107-167 170-226 (350)
131 PRK08862 short chain dehydroge 75.2 35 0.00075 29.8 10.1 72 116-187 6-79 (227)
132 PF00764 Arginosuc_synth: Argi 75.2 43 0.00094 32.2 11.2 126 120-253 2-138 (388)
133 PF09837 DUF2064: Uncharacteri 75.2 33 0.00072 27.2 9.0 98 131-234 2-100 (122)
134 PRK05866 short chain dehydroge 75.0 37 0.0008 30.9 10.6 33 116-148 41-73 (293)
135 TIGR00561 pntA NAD(P) transhyd 74.7 42 0.00091 33.6 11.4 51 117-170 165-215 (511)
136 PTZ00079 NADP-specific glutama 74.6 21 0.00045 35.1 9.1 52 96-147 217-268 (454)
137 cd00401 AdoHcyase S-adenosyl-L 74.5 13 0.00028 36.2 7.6 53 110-166 197-249 (413)
138 COG2130 Putative NADP-dependen 73.6 27 0.0006 32.5 9.0 60 106-168 142-202 (340)
139 PRK12771 putative glutamate sy 73.1 8.5 0.00018 38.8 6.3 55 113-168 135-207 (564)
140 PRK15408 autoinducer 2-binding 72.9 82 0.0018 29.4 16.7 168 74-256 49-243 (336)
141 PF00185 OTCace: Aspartate/orn 72.7 16 0.00034 30.4 6.9 51 119-169 5-65 (158)
142 COG0399 WecE Predicted pyridox 72.4 22 0.00048 34.1 8.5 89 116-204 49-139 (374)
143 COG1751 Uncharacterized conser 72.2 33 0.00072 28.6 8.3 74 90-169 7-90 (186)
144 KOG0025 Zn2+-binding dehydroge 72.2 23 0.00049 32.9 8.1 87 80-170 124-217 (354)
145 PRK12823 benD 1,6-dihydroxycyc 72.0 39 0.00084 29.7 9.7 72 116-187 9-81 (260)
146 PLN02740 Alcohol dehydrogenase 71.7 22 0.00049 33.6 8.6 57 108-167 192-248 (381)
147 TIGR02818 adh_III_F_hyde S-(hy 71.6 30 0.00064 32.6 9.4 57 108-167 179-235 (368)
148 cd06324 PBP1_ABC_sugar_binding 71.4 79 0.0017 28.6 18.2 46 210-258 192-241 (305)
149 cd08301 alcohol_DH_plants Plan 71.2 30 0.00064 32.4 9.3 57 108-167 181-237 (369)
150 cd05313 NAD_bind_2_Glu_DH NAD( 71.0 35 0.00076 30.9 9.1 52 96-147 18-69 (254)
151 cd08300 alcohol_DH_class_III c 70.8 27 0.00059 32.8 8.9 57 108-167 180-236 (368)
152 cd08239 THR_DH_like L-threonin 70.7 52 0.0011 30.2 10.7 58 107-167 156-213 (339)
153 PRK10309 galactitol-1-phosphat 70.5 26 0.00056 32.5 8.6 58 107-167 153-210 (347)
154 cd08277 liver_alcohol_DH_like 69.8 31 0.00068 32.3 9.1 56 108-166 178-233 (365)
155 cd08289 MDR_yhfp_like Yhfp put 69.5 43 0.00094 30.3 9.8 49 115-166 147-195 (326)
156 PF00106 adh_short: short chai 69.5 41 0.00089 27.1 8.7 54 117-170 2-59 (167)
157 cd08292 ETR_like_2 2-enoyl thi 69.4 56 0.0012 29.5 10.5 55 108-165 133-187 (324)
158 PTZ00354 alcohol dehydrogenase 69.4 71 0.0015 28.9 11.2 56 110-168 136-191 (334)
159 cd08242 MDR_like Medium chain 69.4 39 0.00085 30.6 9.5 57 107-167 148-204 (319)
160 cd08287 FDH_like_ADH3 formalde 69.3 66 0.0014 29.5 11.1 53 109-164 163-215 (345)
161 TIGR02853 spore_dpaA dipicolin 68.7 45 0.00097 30.6 9.6 88 73-165 108-197 (287)
162 PF04127 DFP: DNA / pantothena 68.7 30 0.00064 29.7 7.8 67 117-193 21-87 (185)
163 TIGR03538 DapC_gpp succinyldia 68.7 45 0.00097 31.6 10.0 82 87-170 60-145 (393)
164 PRK10754 quinone oxidoreductas 68.3 91 0.002 28.3 11.7 56 108-166 134-189 (327)
165 PRK05993 short chain dehydroge 67.9 70 0.0015 28.5 10.6 52 116-170 5-56 (277)
166 PF13561 adh_short_C2: Enoyl-( 67.8 31 0.00067 30.1 8.1 64 123-187 4-69 (241)
167 cd08296 CAD_like Cinnamyl alco 67.8 61 0.0013 29.7 10.5 52 111-166 160-211 (333)
168 PRK13243 glyoxylate reductase; 67.2 42 0.00091 31.5 9.2 104 117-244 151-256 (333)
169 TIGR01316 gltA glutamate synth 67.1 23 0.00051 34.5 7.8 51 118-168 274-329 (449)
170 PRK06182 short chain dehydroge 67.0 77 0.0017 28.1 10.7 68 116-187 4-71 (273)
171 COG2242 CobL Precorrin-6B meth 66.8 38 0.00083 29.2 8.0 132 114-262 34-167 (187)
172 PLN02827 Alcohol dehydrogenase 66.7 44 0.00096 31.6 9.5 56 108-166 187-242 (378)
173 TIGR01751 crot-CoA-red crotony 66.7 40 0.00087 32.0 9.2 56 110-168 185-240 (398)
174 cd08291 ETR_like_1 2-enoyl thi 66.2 50 0.0011 30.1 9.5 51 116-169 144-195 (324)
175 PRK05396 tdh L-threonine 3-deh 66.2 41 0.00089 30.9 9.0 52 113-167 162-213 (341)
176 KOG1201 Hydroxysteroid 17-beta 65.7 71 0.0015 29.6 10.0 75 114-189 37-113 (300)
177 cd08243 quinone_oxidoreductase 65.1 1E+02 0.0022 27.5 11.2 55 110-167 138-192 (320)
178 PRK09147 succinyldiaminopimela 65.1 46 0.00099 31.6 9.2 79 90-170 64-146 (396)
179 PRK08628 short chain dehydroge 64.9 55 0.0012 28.6 9.2 55 116-170 8-62 (258)
180 cd08288 MDR_yhdh Yhdh putative 64.8 51 0.0011 29.8 9.2 51 114-167 146-196 (324)
181 PRK08993 2-deoxy-D-gluconate 3 64.6 74 0.0016 27.9 10.0 70 116-186 11-81 (253)
182 COG0078 ArgF Ornithine carbamo 64.5 39 0.00084 31.4 8.0 96 69-170 112-214 (310)
183 PRK06702 O-acetylhomoserine am 64.3 37 0.00081 33.1 8.5 79 118-201 78-160 (432)
184 PRK07832 short chain dehydroge 64.3 73 0.0016 28.2 10.0 30 118-147 3-32 (272)
185 PRK06935 2-deoxy-D-gluconate 3 64.2 61 0.0013 28.4 9.4 72 116-187 16-88 (258)
186 PF02558 ApbA: Ketopantoate re 64.1 36 0.00079 27.3 7.3 47 119-169 1-47 (151)
187 cd08297 CAD3 Cinnamyl alcohol 64.1 56 0.0012 29.9 9.4 53 111-166 162-214 (341)
188 cd05211 NAD_bind_Glu_Leu_Phe_V 63.9 38 0.00083 29.8 7.8 52 97-148 4-55 (217)
189 PRK12481 2-deoxy-D-gluconate 3 63.8 61 0.0013 28.4 9.3 71 116-187 9-80 (251)
190 PRK08340 glucose-1-dehydrogena 63.7 1E+02 0.0022 27.0 11.5 30 118-147 3-32 (259)
191 PRK06348 aspartate aminotransf 63.3 88 0.0019 29.5 10.8 111 87-201 62-175 (384)
192 cd08246 crotonyl_coA_red croto 63.2 31 0.00067 32.6 7.7 55 110-167 189-243 (393)
193 PRK12831 putative oxidoreducta 63.2 33 0.0007 33.7 8.0 51 118-168 283-338 (464)
194 PRK07550 hypothetical protein; 63.0 98 0.0021 29.1 11.1 76 91-170 67-143 (386)
195 cd08278 benzyl_alcohol_DH Benz 63.0 95 0.0021 29.0 10.9 57 108-167 180-236 (365)
196 cd08258 Zn_ADH4 Alcohol dehydr 62.7 1E+02 0.0022 28.0 10.8 55 108-164 158-212 (306)
197 PRK13394 3-hydroxybutyrate deh 62.7 61 0.0013 28.2 9.1 55 116-170 8-63 (262)
198 cd08269 Zn_ADH9 Alcohol dehydr 62.7 1.1E+02 0.0025 27.2 11.3 54 108-164 123-176 (312)
199 PLN02527 aspartate carbamoyltr 62.6 96 0.0021 28.8 10.5 60 108-169 145-210 (306)
200 PRK14031 glutamate dehydrogena 62.4 61 0.0013 31.8 9.5 51 96-147 208-259 (444)
201 PRK08226 short chain dehydroge 62.3 57 0.0012 28.6 8.9 54 116-169 7-60 (263)
202 PRK12828 short chain dehydroge 62.2 77 0.0017 27.0 9.5 55 116-170 8-63 (239)
203 cd08231 MDR_TM0436_like Hypoth 61.9 1.3E+02 0.0029 27.7 13.6 53 109-165 172-225 (361)
204 PRK11706 TDP-4-oxo-6-deoxy-D-g 61.9 57 0.0012 30.8 9.2 55 117-171 47-101 (375)
205 PRK08306 dipicolinate synthase 61.9 78 0.0017 29.1 9.8 46 118-166 154-199 (296)
206 PRK02610 histidinol-phosphate 61.8 47 0.001 31.3 8.6 53 118-170 93-145 (374)
207 TIGR01832 kduD 2-deoxy-D-gluco 61.8 74 0.0016 27.5 9.4 70 116-186 6-76 (248)
208 PRK13376 pyrB bifunctional asp 61.6 69 0.0015 32.2 9.9 52 118-169 176-233 (525)
209 PRK07109 short chain dehydroge 61.4 52 0.0011 30.6 8.7 72 116-187 9-82 (334)
210 KOG0023 Alcohol dehydrogenase, 61.2 40 0.00088 31.7 7.5 60 107-170 175-234 (360)
211 TIGR00692 tdh L-threonine 3-de 61.1 69 0.0015 29.5 9.5 52 112-166 159-210 (340)
212 PRK08589 short chain dehydroge 61.1 56 0.0012 29.1 8.6 72 116-187 7-79 (272)
213 cd00288 Pyruvate_Kinase Pyruva 60.9 74 0.0016 31.6 9.9 69 93-170 358-427 (480)
214 PRK13130 H/ACA RNA-protein com 60.6 2.5 5.3E-05 29.0 -0.3 24 1-24 1-31 (56)
215 PLN02586 probable cinnamyl alc 60.4 53 0.0012 30.8 8.7 55 110-167 179-233 (360)
216 cd08284 FDH_like_2 Glutathione 60.2 1.4E+02 0.003 27.3 12.3 53 110-165 163-215 (344)
217 cd08261 Zn_ADH7 Alcohol dehydr 60.2 1.3E+02 0.0027 27.6 11.0 54 108-165 153-206 (337)
218 PLN02178 cinnamyl-alcohol dehy 59.8 36 0.00078 32.3 7.4 52 113-167 177-228 (375)
219 PRK05854 short chain dehydroge 59.8 1.4E+02 0.0031 27.3 11.5 32 116-147 15-46 (313)
220 cd08298 CAD2 Cinnamyl alcohol 59.7 59 0.0013 29.6 8.7 54 108-165 161-214 (329)
221 PF01262 AlaDh_PNT_C: Alanine 59.6 39 0.00085 28.1 6.8 50 118-170 22-71 (168)
222 PRK08261 fabG 3-ketoacyl-(acyl 59.5 1E+02 0.0022 29.9 10.6 72 115-187 210-281 (450)
223 PF07279 DUF1442: Protein of u 59.5 27 0.00059 30.7 5.9 56 105-163 34-94 (218)
224 PF08659 KR: KR domain; Inter 59.4 58 0.0013 27.3 8.0 71 117-187 2-78 (181)
225 PRK08192 aspartate carbamoyltr 59.3 43 0.00094 31.6 7.7 55 115-170 159-219 (338)
226 cd05288 PGDH Prostaglandin deh 59.0 1.4E+02 0.003 27.0 11.1 55 108-165 139-194 (329)
227 PRK05650 short chain dehydroge 58.9 1.3E+02 0.0028 26.6 10.7 30 118-147 3-32 (270)
228 PRK06720 hypothetical protein; 58.9 1.1E+02 0.0023 25.6 10.4 31 116-146 17-47 (169)
229 PRK11891 aspartate carbamoyltr 58.9 51 0.0011 32.2 8.2 53 118-170 243-301 (429)
230 PRK12809 putative oxidoreducta 58.7 32 0.0007 35.3 7.3 52 117-168 311-380 (639)
231 PRK05826 pyruvate kinase; Prov 58.7 1.7E+02 0.0037 28.9 12.0 124 130-259 263-407 (465)
232 cd08250 Mgc45594_like Mgc45594 58.6 1.4E+02 0.0031 27.0 11.4 54 109-165 134-187 (329)
233 cd05188 MDR Medium chain reduc 58.4 1.1E+02 0.0023 26.5 9.9 53 109-165 129-181 (271)
234 PLN00175 aminotransferase fami 58.4 1.3E+02 0.0029 28.8 11.2 108 91-201 91-200 (413)
235 PRK06114 short chain dehydroge 58.1 1.1E+02 0.0024 26.7 9.9 54 116-169 9-64 (254)
236 COG2085 Predicted dinucleotide 57.9 72 0.0016 28.0 8.2 80 118-200 3-95 (211)
237 PRK07062 short chain dehydroge 57.6 1.2E+02 0.0027 26.5 10.2 33 116-148 9-41 (265)
238 PLN02702 L-idonate 5-dehydroge 57.6 90 0.0019 29.1 9.7 57 108-167 175-231 (364)
239 cd08245 CAD Cinnamyl alcohol d 57.5 85 0.0018 28.5 9.4 55 110-168 158-212 (330)
240 cd08267 MDR1 Medium chain dehy 57.5 77 0.0017 28.3 9.0 53 109-165 138-190 (319)
241 PRK08063 enoyl-(acyl carrier p 57.4 1E+02 0.0022 26.6 9.5 55 116-170 5-61 (250)
242 PRK06139 short chain dehydroge 57.4 59 0.0013 30.3 8.3 54 116-169 8-62 (330)
243 PF02887 PK_C: Pyruvate kinase 57.2 72 0.0016 24.7 7.6 65 119-187 21-86 (117)
244 PRK10083 putative oxidoreducta 57.0 1.1E+02 0.0025 27.8 10.2 59 106-167 152-211 (339)
245 PF02737 3HCDH_N: 3-hydroxyacy 57.0 20 0.00044 30.4 4.7 30 119-148 2-31 (180)
246 PRK05557 fabG 3-ketoacyl-(acyl 57.0 1E+02 0.0022 26.3 9.4 55 116-170 6-62 (248)
247 PRK03692 putative UDP-N-acetyl 56.9 72 0.0016 28.6 8.4 94 128-233 69-169 (243)
248 PRK02102 ornithine carbamoyltr 56.9 1.3E+02 0.0029 28.2 10.5 61 107-169 148-216 (331)
249 cd05282 ETR_like 2-enoyl thioe 56.6 1.1E+02 0.0024 27.4 10.0 54 108-164 132-185 (323)
250 cd05279 Zn_ADH1 Liver alcohol 56.5 1.2E+02 0.0026 28.3 10.4 54 108-164 177-230 (365)
251 PRK12937 short chain dehydroge 56.4 1.1E+02 0.0023 26.4 9.4 55 116-170 6-62 (245)
252 cd08251 polyketide_synthase po 56.3 1.4E+02 0.0031 26.2 11.0 56 107-165 113-168 (303)
253 TIGR02824 quinone_pig3 putativ 56.3 1.5E+02 0.0032 26.4 11.1 57 107-166 132-188 (325)
254 PRK12810 gltD glutamate syntha 56.0 53 0.0011 32.3 8.1 50 118-167 145-212 (471)
255 PRK05786 fabG 3-ketoacyl-(acyl 55.9 84 0.0018 26.9 8.6 33 116-148 6-38 (238)
256 PLN02342 ornithine carbamoyltr 55.8 60 0.0013 30.8 8.0 61 107-169 187-251 (348)
257 TIGR00877 purD phosphoribosyla 55.8 1.9E+02 0.0042 27.6 12.0 29 119-147 3-31 (423)
258 PRK07792 fabG 3-ketoacyl-(acyl 55.7 88 0.0019 28.5 9.1 55 116-170 13-69 (306)
259 cd08262 Zn_ADH8 Alcohol dehydr 55.6 1E+02 0.0022 28.2 9.6 55 107-164 154-208 (341)
260 cd08299 alcohol_DH_class_I_II_ 55.4 87 0.0019 29.5 9.2 54 108-164 184-237 (373)
261 PRK06836 aspartate aminotransf 55.3 1.4E+02 0.0031 28.3 10.7 83 118-201 98-181 (394)
262 cd08244 MDR_enoyl_red Possible 55.2 1.2E+02 0.0027 27.1 10.0 55 108-165 136-190 (324)
263 PRK07097 gluconate 5-dehydroge 55.1 87 0.0019 27.6 8.8 72 116-187 11-84 (265)
264 PRK08703 short chain dehydroge 55.1 1.4E+02 0.003 25.7 10.3 32 116-147 7-38 (239)
265 cd05286 QOR2 Quinone oxidoredu 55.1 1.5E+02 0.0032 26.1 10.9 55 109-166 131-185 (320)
266 PRK04284 ornithine carbamoyltr 54.9 1.5E+02 0.0032 28.0 10.4 59 109-169 150-216 (332)
267 cd05281 TDH Threonine dehydrog 54.9 81 0.0018 29.0 8.8 51 113-166 162-212 (341)
268 PRK07523 gluconate 5-dehydroge 54.7 86 0.0019 27.3 8.6 54 116-169 11-65 (255)
269 cd08279 Zn_ADH_class_III Class 54.7 1.6E+02 0.0035 27.3 11.0 54 108-164 176-229 (363)
270 PRK00779 ornithine carbamoyltr 54.7 66 0.0014 29.9 8.0 61 107-169 145-209 (304)
271 PRK08410 2-hydroxyacid dehydro 54.6 44 0.00095 31.0 6.9 112 117-258 146-259 (311)
272 cd08240 6_hydroxyhexanoate_dh_ 54.4 1.7E+02 0.0036 26.9 10.9 51 112-165 173-223 (350)
273 cd08235 iditol_2_DH_like L-idi 54.2 1.7E+02 0.0038 26.6 11.4 54 108-164 159-212 (343)
274 cd08282 PFDH_like Pseudomonas 54.1 86 0.0019 29.4 9.0 55 108-165 170-224 (375)
275 TIGR00658 orni_carb_tr ornithi 53.7 76 0.0017 29.4 8.3 61 107-169 141-208 (304)
276 PRK11658 UDP-4-amino-4-deoxy-L 53.7 84 0.0018 29.8 8.9 52 119-170 51-102 (379)
277 TIGR01318 gltD_gamma_fam gluta 53.5 56 0.0012 32.1 7.8 51 117-167 142-210 (467)
278 PRK08277 D-mannonate oxidoredu 53.5 1E+02 0.0022 27.3 9.0 54 116-169 11-65 (278)
279 PRK12769 putative oxidoreducta 53.4 25 0.00054 36.2 5.5 51 117-167 328-396 (654)
280 PRK06172 short chain dehydroge 53.2 1.1E+02 0.0023 26.7 8.9 54 116-169 8-62 (253)
281 PRK09422 ethanol-active dehydr 53.1 1.4E+02 0.003 27.2 10.1 57 108-168 156-213 (338)
282 COG1052 LdhA Lactate dehydroge 53.1 98 0.0021 29.0 8.9 106 117-246 147-254 (324)
283 cd08253 zeta_crystallin Zeta-c 53.1 1.6E+02 0.0036 26.0 10.9 54 110-166 140-193 (325)
284 PRK15407 lipopolysaccharide bi 53.0 1.1E+02 0.0024 29.8 9.7 54 118-171 80-141 (438)
285 PRK06483 dihydromonapterin red 53.0 1.5E+02 0.0032 25.5 10.2 68 116-186 3-70 (236)
286 cd08260 Zn_ADH6 Alcohol dehydr 52.7 1.6E+02 0.0035 26.9 10.5 51 109-163 160-210 (345)
287 PF13248 zf-ribbon_3: zinc-rib 52.6 4.1 8.9E-05 23.1 -0.2 7 14-20 19-26 (26)
288 TIGR02823 oxido_YhdH putative 52.4 1.2E+02 0.0026 27.4 9.4 53 112-167 142-195 (323)
289 PRK12938 acetyacetyl-CoA reduc 52.4 96 0.0021 26.8 8.5 54 116-169 4-59 (246)
290 PRK09257 aromatic amino acid a 52.3 1.2E+02 0.0027 28.6 9.8 82 86-169 64-148 (396)
291 cd08264 Zn_ADH_like2 Alcohol d 52.0 89 0.0019 28.3 8.5 49 108-163 156-204 (325)
292 PRK11749 dihydropyrimidine deh 51.8 99 0.0021 30.1 9.2 51 118-168 275-331 (457)
293 cd08259 Zn_ADH5 Alcohol dehydr 51.7 1.2E+02 0.0026 27.3 9.4 53 110-165 158-210 (332)
294 COG2185 Sbm Methylmalonyl-CoA 51.6 69 0.0015 26.4 6.7 83 155-247 33-116 (143)
295 PRK07791 short chain dehydroge 51.6 1.5E+02 0.0033 26.6 9.9 74 115-188 6-90 (286)
296 PRK15409 bifunctional glyoxyla 51.5 60 0.0013 30.4 7.3 104 117-244 146-252 (323)
297 PRK14807 histidinol-phosphate 51.4 83 0.0018 29.3 8.3 83 118-201 78-161 (351)
298 cd05285 sorbitol_DH Sorbitol d 51.4 1.3E+02 0.0027 27.7 9.5 58 107-167 155-212 (343)
299 PRK05166 histidinol-phosphate 51.4 84 0.0018 29.5 8.4 83 118-201 90-172 (371)
300 PLN02306 hydroxypyruvate reduc 51.2 78 0.0017 30.5 8.1 119 117-244 166-288 (386)
301 COG0623 FabI Enoyl-[acyl-carri 51.2 88 0.0019 28.1 7.7 68 154-230 24-93 (259)
302 PRK12935 acetoacetyl-CoA reduc 51.1 1.2E+02 0.0025 26.3 8.8 55 116-170 7-63 (247)
303 PF12000 Glyco_trans_4_3: Gkyc 51.0 40 0.00086 28.6 5.4 41 209-255 55-95 (171)
304 cd08254 hydroxyacyl_CoA_DH 6-h 51.0 1.9E+02 0.0041 26.1 10.8 57 108-168 159-215 (338)
305 PRK09414 glutamate dehydrogena 50.6 66 0.0014 31.6 7.6 52 96-147 212-263 (445)
306 PRK04523 N-acetylornithine car 50.6 1.3E+02 0.0028 28.4 9.4 45 125-169 185-236 (335)
307 KOG2862 Alanine-glyoxylate ami 50.6 98 0.0021 29.1 8.1 27 119-145 95-121 (385)
308 PRK08017 oxidoreductase; Provi 50.4 1.5E+02 0.0033 25.6 9.5 51 117-170 4-54 (256)
309 cd05280 MDR_yhdh_yhfp Yhdh and 50.4 1.4E+02 0.003 26.8 9.5 48 116-166 148-195 (325)
310 PRK05839 hypothetical protein; 50.1 1.9E+02 0.0042 27.1 10.7 81 87-170 56-138 (374)
311 PRK12779 putative bifunctional 50.0 28 0.0006 37.6 5.3 51 117-167 307-375 (944)
312 PRK08912 hypothetical protein; 50.0 2.2E+02 0.0049 26.7 12.6 79 89-170 61-140 (387)
313 PRK04870 histidinol-phosphate 50.0 96 0.0021 28.8 8.5 83 118-201 83-166 (356)
314 TIGR02817 adh_fam_1 zinc-bindi 49.9 1.3E+02 0.0028 27.3 9.3 50 115-167 149-199 (336)
315 PRK07066 3-hydroxybutyryl-CoA 49.7 1.7E+02 0.0037 27.4 10.0 32 117-148 8-39 (321)
316 COG2518 Pcm Protein-L-isoaspar 49.7 66 0.0014 28.2 6.7 108 102-231 60-171 (209)
317 TIGR01470 cysG_Nterm siroheme 49.6 79 0.0017 27.4 7.3 50 118-170 11-60 (205)
318 PLN02623 pyruvate kinase 49.6 2.6E+02 0.0056 28.5 11.7 123 129-259 366-510 (581)
319 PRK02255 putrescine carbamoylt 49.6 94 0.002 29.3 8.3 51 119-169 157-214 (338)
320 PRK09134 short chain dehydroge 49.6 1.7E+02 0.0037 25.5 9.7 54 116-169 10-65 (258)
321 PRK12562 ornithine carbamoyltr 49.5 89 0.0019 29.5 8.1 52 118-169 158-217 (334)
322 PRK13984 putative oxidoreducta 49.5 64 0.0014 32.7 7.7 51 117-167 284-352 (604)
323 PRK07666 fabG 3-ketoacyl-(acyl 49.5 1.4E+02 0.0031 25.6 9.1 55 116-170 8-63 (239)
324 PRK06079 enoyl-(acyl carrier p 49.5 1.1E+02 0.0024 26.8 8.5 32 116-147 8-41 (252)
325 PRK12480 D-lactate dehydrogena 49.4 80 0.0017 29.6 7.8 101 118-244 148-250 (330)
326 PRK12744 short chain dehydroge 49.4 1.2E+02 0.0026 26.5 8.7 71 116-186 9-85 (257)
327 PRK08068 transaminase; Reviewe 49.3 1.7E+02 0.0036 27.6 10.2 78 90-170 69-147 (389)
328 cd01078 NAD_bind_H4MPT_DH NADP 49.3 1.6E+02 0.0035 24.8 10.8 32 115-146 28-59 (194)
329 PRK06128 oxidoreductase; Provi 49.3 1.8E+02 0.0038 26.3 10.0 71 116-186 56-130 (300)
330 PRK08278 short chain dehydroge 49.2 1.7E+02 0.0036 26.0 9.7 54 116-169 7-68 (273)
331 PRK12826 3-ketoacyl-(acyl-carr 49.1 1.3E+02 0.0028 25.8 8.8 55 116-170 7-62 (251)
332 TIGR01206 lysW lysine biosynth 49.1 7.7 0.00017 26.4 0.7 18 6-23 3-35 (54)
333 PRK07366 succinyldiaminopimela 49.1 1.9E+02 0.0041 27.2 10.5 109 89-201 66-178 (388)
334 cd08248 RTN4I1 Human Reticulon 49.0 1E+02 0.0023 28.1 8.6 48 115-166 163-210 (350)
335 PRK06505 enoyl-(acyl carrier p 48.9 1.6E+02 0.0034 26.3 9.5 71 116-187 8-82 (271)
336 KOG1205 Predicted dehydrogenas 48.9 1.7E+02 0.0037 26.9 9.6 73 116-188 13-89 (282)
337 TIGR03537 DapC succinyldiamino 48.9 2.2E+02 0.0048 26.3 11.1 111 88-201 33-149 (350)
338 PRK12939 short chain dehydroge 48.7 1.3E+02 0.0029 25.7 8.8 54 116-169 8-62 (250)
339 PRK13581 D-3-phosphoglycerate 48.7 97 0.0021 31.1 8.7 104 117-244 141-246 (526)
340 PRK08217 fabG 3-ketoacyl-(acyl 48.6 1.3E+02 0.0028 25.9 8.7 54 116-169 6-60 (253)
341 PRK05876 short chain dehydroge 48.5 1.3E+02 0.0029 26.8 8.9 72 116-187 7-80 (275)
342 PLN02477 glutamate dehydrogena 48.5 1.3E+02 0.0028 29.2 9.2 51 96-147 186-237 (410)
343 PRK08303 short chain dehydroge 48.4 1.5E+02 0.0033 27.1 9.5 73 116-188 9-93 (305)
344 PRK07806 short chain dehydroge 48.4 1.8E+02 0.0039 25.1 9.6 54 116-169 7-62 (248)
345 PRK00257 erythronate-4-phospha 48.3 52 0.0011 31.6 6.4 56 91-147 88-147 (381)
346 PRK12429 3-hydroxybutyrate deh 48.2 1.5E+02 0.0033 25.6 9.1 54 116-169 5-59 (258)
347 PRK09853 putative selenate red 48.1 71 0.0015 34.8 7.9 50 118-167 541-608 (1019)
348 PRK12814 putative NADPH-depend 48.0 1.1E+02 0.0024 31.5 9.2 55 112-167 320-380 (652)
349 TIGR02379 ECA_wecE TDP-4-keto- 48.0 55 0.0012 31.2 6.6 55 117-171 47-101 (376)
350 PRK06197 short chain dehydroge 47.9 1.8E+02 0.0039 26.2 9.9 33 116-148 17-49 (306)
351 PRK07326 short chain dehydroge 47.7 1.8E+02 0.0038 24.8 9.4 32 116-147 7-38 (237)
352 PLN02514 cinnamyl-alcohol dehy 47.7 1.6E+02 0.0035 27.4 9.7 56 109-167 175-230 (357)
353 cd08276 MDR7 Medium chain dehy 47.4 2.1E+02 0.0046 25.6 11.4 55 109-167 155-209 (336)
354 cd08249 enoyl_reductase_like e 47.4 1.2E+02 0.0025 27.9 8.6 49 113-165 153-201 (339)
355 COG0026 PurK Phosphoribosylami 47.3 37 0.00081 32.4 5.1 33 118-150 3-35 (375)
356 TIGR00936 ahcY adenosylhomocys 47.3 91 0.002 30.3 7.9 94 113-234 193-286 (406)
357 PRK06138 short chain dehydroge 47.1 1.5E+02 0.0033 25.5 8.9 70 116-186 6-77 (252)
358 COG0169 AroE Shikimate 5-dehyd 47.1 74 0.0016 29.3 7.0 75 75-150 85-160 (283)
359 cd05278 FDH_like Formaldehyde 47.1 1.4E+02 0.003 27.3 9.0 55 108-165 161-215 (347)
360 PRK07890 short chain dehydroge 47.0 1.4E+02 0.0029 26.0 8.6 55 115-169 5-60 (258)
361 PRK07677 short chain dehydroge 46.9 1.4E+02 0.0031 25.8 8.8 54 116-169 2-56 (252)
362 PRK06124 gluconate 5-dehydroge 46.9 1.5E+02 0.0031 25.8 8.8 55 115-169 11-66 (256)
363 TIGR03206 benzo_BadH 2-hydroxy 46.5 1.5E+02 0.0032 25.6 8.7 55 116-170 4-59 (250)
364 cd08290 ETR 2-enoyl thioester 46.4 1.3E+02 0.0027 27.5 8.7 59 110-168 142-201 (341)
365 PRK01713 ornithine carbamoyltr 46.4 1.5E+02 0.0033 27.8 9.2 51 119-169 159-217 (334)
366 PLN03139 formate dehydrogenase 46.4 2.5E+02 0.0055 27.0 10.8 106 117-244 200-307 (386)
367 PRK14804 ornithine carbamoyltr 46.4 95 0.0021 28.9 7.7 36 115-151 153-189 (311)
368 PRK15438 erythronate-4-phospha 46.4 59 0.0013 31.2 6.4 57 90-147 87-147 (378)
369 PRK06194 hypothetical protein; 46.3 1.7E+02 0.0037 26.0 9.3 71 116-186 7-79 (287)
370 PRK09072 short chain dehydroge 46.3 1.3E+02 0.0029 26.3 8.5 33 116-148 6-38 (263)
371 COG1062 AdhC Zn-dependent alco 46.2 2.7E+02 0.0059 26.5 11.1 115 105-259 176-291 (366)
372 cd05284 arabinose_DH_like D-ar 46.2 1.3E+02 0.0029 27.3 8.8 51 111-165 164-215 (340)
373 PF00670 AdoHcyase_NAD: S-aden 46.1 1.1E+02 0.0023 25.8 7.2 92 113-232 21-112 (162)
374 PRK12778 putative bifunctional 46.1 78 0.0017 33.2 7.9 51 118-168 572-628 (752)
375 PF00208 ELFV_dehydrog: Glutam 46.1 79 0.0017 28.3 6.9 51 97-147 12-63 (244)
376 COG0800 Eda 2-keto-3-deoxy-6-p 46.0 2.1E+02 0.0045 25.2 12.0 75 120-202 44-118 (211)
377 PRK07035 short chain dehydroge 46.0 1.6E+02 0.0034 25.5 8.9 54 116-169 9-63 (252)
378 cd08234 threonine_DH_like L-th 45.9 2.3E+02 0.005 25.6 10.9 54 108-164 153-206 (334)
379 cd01714 ETF_beta The electron 45.9 2E+02 0.0042 24.8 11.0 52 206-259 95-150 (202)
380 PRK06949 short chain dehydroge 45.9 1.3E+02 0.0029 26.0 8.4 33 116-148 10-42 (258)
381 PRK08936 glucose-1-dehydrogena 45.9 2E+02 0.0043 25.1 9.5 54 116-169 8-63 (261)
382 PRK06463 fabG 3-ketoacyl-(acyl 45.8 2E+02 0.0044 25.0 10.6 69 116-187 8-76 (255)
383 PRK03515 ornithine carbamoyltr 45.8 79 0.0017 29.8 7.1 52 118-169 158-217 (336)
384 PRK09496 trkA potassium transp 45.7 2.8E+02 0.0061 26.6 13.1 48 119-169 3-51 (453)
385 PRK06436 glycerate dehydrogena 45.6 1.7E+02 0.0037 27.1 9.2 101 117-244 123-225 (303)
386 PRK07454 short chain dehydroge 45.6 1.4E+02 0.0031 25.6 8.5 72 116-187 7-80 (241)
387 PRK06701 short chain dehydroge 45.6 2.2E+02 0.0047 25.7 9.9 54 116-169 47-102 (290)
388 PRK06181 short chain dehydroge 45.5 1.4E+02 0.0031 26.0 8.6 53 117-169 3-56 (263)
389 PRK15469 ghrA bifunctional gly 45.5 1.9E+02 0.0042 26.8 9.6 105 117-245 137-243 (312)
390 KOG1197 Predicted quinone oxid 45.5 2.3E+02 0.0051 26.0 9.6 55 107-164 139-193 (336)
391 PF02310 B12-binding: B12 bind 45.4 89 0.0019 23.9 6.4 95 128-231 17-114 (121)
392 COG2894 MinD Septum formation 45.4 2.3E+02 0.005 25.5 9.3 117 128-260 20-149 (272)
393 TIGR03325 BphB_TodD cis-2,3-di 45.2 1.8E+02 0.0039 25.4 9.2 51 116-169 6-57 (262)
394 PRK06500 short chain dehydroge 45.1 1.9E+02 0.0042 24.8 9.3 50 116-168 7-57 (249)
395 PF13478 XdhC_C: XdhC Rossmann 45.1 29 0.00062 28.2 3.6 31 119-149 1-31 (136)
396 PRK08085 gluconate 5-dehydroge 45.1 1.6E+02 0.0035 25.5 8.8 71 116-186 10-82 (254)
397 COG0742 N6-adenine-specific me 45.0 1.6E+02 0.0034 25.4 8.2 78 84-170 18-100 (187)
398 PRK07231 fabG 3-ketoacyl-(acyl 45.0 2E+02 0.0042 24.7 9.3 33 116-148 6-38 (251)
399 PRK06841 short chain dehydroge 44.9 1.9E+02 0.0042 24.9 9.3 32 116-147 16-47 (255)
400 cd08270 MDR4 Medium chain dehy 44.8 1.8E+02 0.004 25.8 9.3 51 114-167 132-182 (305)
401 PRK07067 sorbitol dehydrogenas 44.8 1.8E+02 0.004 25.2 9.2 32 116-147 7-38 (257)
402 PF13460 NAD_binding_10: NADH( 44.7 58 0.0013 26.8 5.6 47 119-170 2-48 (183)
403 TIGR01064 pyruv_kin pyruvate k 44.7 1.6E+02 0.0035 29.1 9.4 84 94-186 357-442 (473)
404 PF03807 F420_oxidored: NADP o 44.7 1.2E+02 0.0026 22.1 7.0 47 119-167 2-52 (96)
405 PRK06077 fabG 3-ketoacyl-(acyl 44.6 1.4E+02 0.003 25.8 8.3 54 116-169 7-62 (252)
406 PRK12921 2-dehydropantoate 2-r 44.6 2.4E+02 0.0052 25.4 12.5 45 119-167 3-47 (305)
407 PRK05867 short chain dehydroge 44.5 1.6E+02 0.0034 25.6 8.7 72 116-187 10-83 (253)
408 cd08255 2-desacetyl-2-hydroxye 44.4 1.6E+02 0.0034 26.0 8.7 51 108-162 91-142 (277)
409 TIGR01317 GOGAT_sm_gam glutama 44.4 47 0.001 32.8 5.7 51 117-167 144-212 (485)
410 PRK06200 2,3-dihydroxy-2,3-dih 44.2 1.9E+02 0.0041 25.3 9.2 69 116-187 7-77 (263)
411 PRK07814 short chain dehydroge 44.1 1.6E+02 0.0034 25.9 8.6 53 116-168 11-64 (263)
412 PRK08265 short chain dehydroge 43.8 2E+02 0.0044 25.2 9.3 69 116-187 7-77 (261)
413 PRK12745 3-ketoacyl-(acyl-carr 43.8 2E+02 0.0044 24.8 9.2 53 117-169 4-58 (256)
414 PRK12749 quinate/shikimate deh 43.7 1.3E+02 0.0028 27.6 8.1 32 118-149 126-157 (288)
415 TIGR02095 glgA glycogen/starch 43.4 2E+02 0.0043 28.0 9.9 26 124-149 19-44 (473)
416 PRK08264 short chain dehydroge 43.4 1.1E+02 0.0024 26.2 7.4 32 116-147 7-39 (238)
417 PRK07774 short chain dehydroge 43.3 2.1E+02 0.0045 24.6 9.2 33 116-148 7-39 (250)
418 cd08272 MDR6 Medium chain dehy 43.3 2.4E+02 0.0051 25.0 10.6 56 108-167 138-193 (326)
419 PRK12414 putative aminotransfe 43.2 2.8E+02 0.0061 26.1 10.7 81 118-200 92-174 (384)
420 cd05289 MDR_like_2 alcohol deh 43.0 2E+02 0.0042 25.3 9.2 51 110-164 140-190 (309)
421 PRK06113 7-alpha-hydroxysteroi 42.9 1.9E+02 0.0041 25.1 8.9 54 116-169 12-66 (255)
422 COG0159 TrpA Tryptophan syntha 42.9 2.2E+02 0.0049 25.9 9.2 78 84-169 99-178 (265)
423 PRK08213 gluconate 5-dehydroge 42.9 1.8E+02 0.0039 25.3 8.8 55 116-170 13-68 (259)
424 COG1587 HemD Uroporphyrinogen- 42.8 1.8E+02 0.004 25.7 8.8 122 128-259 86-215 (248)
425 PLN02928 oxidoreductase family 42.7 1.1E+02 0.0023 29.0 7.6 114 117-244 160-278 (347)
426 PRK06198 short chain dehydroge 42.6 2.2E+02 0.0048 24.6 9.3 54 116-169 7-62 (260)
427 PF13240 zinc_ribbon_2: zinc-r 42.6 7.9 0.00017 21.4 -0.1 6 14-19 16-22 (23)
428 PRK05957 aspartate aminotransf 42.6 89 0.0019 29.6 7.1 53 118-171 91-143 (389)
429 cd05283 CAD1 Cinnamyl alcohol 42.5 1.9E+02 0.0042 26.4 9.3 52 112-167 167-218 (337)
430 PF01494 FAD_binding_3: FAD bi 42.3 37 0.00081 30.9 4.4 31 118-148 3-33 (356)
431 TIGR03801 asp_4_decarbox aspar 42.2 2E+02 0.0043 28.9 9.7 82 89-170 126-215 (521)
432 PRK07574 formate dehydrogenase 42.2 3.2E+02 0.0069 26.3 10.8 106 117-244 193-300 (385)
433 TIGR02415 23BDH acetoin reduct 42.2 2.1E+02 0.0045 24.7 9.0 52 118-169 3-55 (254)
434 PF00290 Trp_syntA: Tryptophan 42.1 2.2E+02 0.0048 25.8 9.2 69 95-168 100-170 (259)
435 PLN02918 pyridoxine (pyridoxam 42.1 1.8E+02 0.0038 29.5 9.2 50 116-165 136-192 (544)
436 PRK05717 oxidoreductase; Valid 42.0 2.3E+02 0.0049 24.7 9.3 53 115-169 10-62 (255)
437 PRK12770 putative glutamate sy 41.9 1.1E+02 0.0023 28.7 7.4 51 118-168 174-230 (352)
438 PRK14805 ornithine carbamoyltr 41.9 82 0.0018 29.2 6.5 61 107-169 140-207 (302)
439 cd01076 NAD_bind_1_Glu_DH NAD( 41.7 2.4E+02 0.0052 24.9 9.2 52 97-148 12-63 (227)
440 cd08286 FDH_like_ADH2 formalde 41.6 2.8E+02 0.006 25.4 10.2 52 109-164 161-213 (345)
441 cd08238 sorbose_phosphate_red 41.6 3.2E+02 0.0068 26.1 10.8 51 109-161 170-222 (410)
442 PRK06290 aspartate aminotransf 41.6 2.8E+02 0.0061 26.5 10.5 78 90-170 80-159 (410)
443 TIGR01963 PHB_DH 3-hydroxybuty 41.3 1.8E+02 0.0039 25.0 8.5 53 117-169 3-56 (255)
444 cd08187 BDH Butanol dehydrogen 41.2 3.2E+02 0.0069 25.9 11.2 94 141-242 7-105 (382)
445 PRK06947 glucose-1-dehydrogena 41.1 1.5E+02 0.0032 25.5 7.9 53 117-169 4-58 (248)
446 PRK10538 malonic semialdehyde 41.1 2.3E+02 0.005 24.5 9.2 49 118-169 3-52 (248)
447 PF04989 CmcI: Cephalosporin h 41.0 82 0.0018 27.6 6.0 47 210-258 23-70 (206)
448 PRK05693 short chain dehydroge 41.0 2.5E+02 0.0055 24.7 10.5 66 117-186 3-68 (274)
449 COG0300 DltE Short-chain dehyd 40.9 2E+02 0.0043 26.2 8.6 72 116-187 7-81 (265)
450 PRK12814 putative NADPH-depend 40.8 1.2E+02 0.0026 31.3 8.1 52 117-168 194-263 (652)
451 PF12831 FAD_oxidored: FAD dep 40.8 36 0.00079 33.0 4.2 31 119-149 2-32 (428)
452 PRK05872 short chain dehydroge 40.7 2.1E+02 0.0046 25.7 9.1 68 116-187 10-82 (296)
453 PRK07324 transaminase; Validat 40.7 1.1E+02 0.0023 28.9 7.3 82 118-201 82-166 (373)
454 cd08191 HHD 6-hydroxyhexanoate 40.6 3.3E+02 0.0072 25.9 11.0 26 213-242 73-98 (386)
455 PRK07392 threonine-phosphate d 40.5 1.1E+02 0.0025 28.4 7.5 51 118-170 76-126 (360)
456 KOG1431 GDP-L-fucose synthetas 40.5 24 0.00053 31.6 2.6 47 79-130 164-210 (315)
457 PRK08251 short chain dehydroge 40.5 2.1E+02 0.0047 24.5 8.8 33 116-148 3-35 (248)
458 PF02887 PK_C: Pyruvate kinase 40.4 84 0.0018 24.3 5.5 44 210-259 7-50 (117)
459 PRK07985 oxidoreductase; Provi 40.3 2.1E+02 0.0045 25.8 9.0 72 116-187 50-125 (294)
460 PRK15481 transcriptional regul 40.1 2.3E+02 0.0049 27.2 9.6 80 118-201 143-225 (431)
461 PF04122 CW_binding_2: Putativ 40.1 1.5E+02 0.0032 21.7 10.0 55 116-171 25-82 (92)
462 cd00288 Pyruvate_Kinase Pyruva 40.0 3.9E+02 0.0085 26.6 11.6 123 130-259 263-409 (480)
463 PF03446 NAD_binding_2: NAD bi 39.9 1.2E+02 0.0025 25.0 6.6 45 118-165 3-47 (163)
464 CHL00194 ycf39 Ycf39; Provisio 39.8 1.2E+02 0.0026 27.8 7.3 31 118-148 3-33 (317)
465 cd08241 QOR1 Quinone oxidoredu 39.8 2.6E+02 0.0057 24.6 11.2 54 109-165 134-187 (323)
466 PF00890 FAD_binding_2: FAD bi 39.8 41 0.00089 32.1 4.4 31 119-149 2-32 (417)
467 PRK06847 hypothetical protein; 39.7 48 0.001 31.0 4.7 30 118-147 6-35 (375)
468 PRK09754 phenylpropionate diox 39.6 1.3E+02 0.0028 28.6 7.8 50 118-167 146-205 (396)
469 TIGR01292 TRX_reduct thioredox 39.5 1.3E+02 0.0028 26.7 7.4 49 118-166 143-195 (300)
470 PF11760 CbiG_N: Cobalamin syn 39.5 91 0.002 23.2 5.2 50 213-262 3-52 (84)
471 TIGR03590 PseG pseudaminic aci 39.5 2.9E+02 0.0063 24.9 9.9 81 81-170 2-88 (279)
472 PRK13982 bifunctional SbtC-lik 39.5 41 0.00088 33.4 4.3 43 122-170 279-321 (475)
473 PRK07775 short chain dehydroge 39.3 2.4E+02 0.0053 24.9 9.2 54 116-169 11-65 (274)
474 TIGR01264 tyr_amTase_E tyrosin 39.3 3.4E+02 0.0073 25.7 10.6 76 90-169 72-147 (401)
475 COG1139 Uncharacterized conser 39.2 11 0.00024 36.5 0.3 12 6-17 308-321 (459)
476 PRK12779 putative bifunctional 38.8 1.1E+02 0.0025 33.1 7.8 50 118-167 449-503 (944)
477 PF02254 TrkA_N: TrkA-N domain 38.6 1.7E+02 0.0037 22.0 8.4 48 119-169 1-48 (116)
478 PRK09126 hypothetical protein; 38.5 42 0.0009 31.6 4.2 29 119-147 6-34 (392)
479 PTZ00376 aspartate aminotransf 38.5 2.5E+02 0.0055 26.6 9.6 81 86-170 67-153 (404)
480 PRK07576 short chain dehydroge 38.5 2.4E+02 0.0052 24.8 8.9 54 116-169 10-64 (264)
481 cd08265 Zn_ADH3 Alcohol dehydr 38.4 1.1E+02 0.0023 28.9 7.0 55 110-167 199-253 (384)
482 PF13377 Peripla_BP_3: Peripla 38.3 1.7E+02 0.0036 23.2 7.3 34 221-256 68-105 (160)
483 PLN03026 histidinol-phosphate 38.2 1.7E+02 0.0037 27.6 8.3 82 118-201 105-188 (380)
484 PRK02731 histidinol-phosphate 38.2 1.5E+02 0.0032 27.6 7.8 52 118-170 86-137 (367)
485 PRK07865 N-succinyldiaminopime 38.1 2.8E+02 0.0061 25.7 9.7 80 87-169 58-139 (364)
486 PRK06207 aspartate aminotransf 38.1 3.6E+02 0.0078 25.6 11.8 78 90-170 77-155 (405)
487 PF13450 NAD_binding_8: NAD(P) 38.0 62 0.0013 22.6 4.0 29 122-150 2-30 (68)
488 PRK01438 murD UDP-N-acetylmura 38.0 1.3E+02 0.0028 29.5 7.6 50 118-167 18-69 (480)
489 PRK04965 NADH:flavorubredoxin 38.0 2E+02 0.0043 27.0 8.7 50 118-167 143-202 (377)
490 PRK08642 fabG 3-ketoacyl-(acyl 37.9 2.6E+02 0.0057 24.0 9.3 33 116-148 6-38 (253)
491 cd08283 FDH_like_1 Glutathione 37.8 2.2E+02 0.0047 26.9 9.0 56 108-166 178-234 (386)
492 TIGR03540 DapC_direct LL-diami 37.7 3.5E+02 0.0075 25.3 10.5 52 118-170 93-144 (383)
493 TIGR00465 ilvC ketol-acid redu 37.6 1E+02 0.0023 28.7 6.5 117 118-261 5-121 (314)
494 TIGR03845 sulfopyru_alph sulfo 37.5 2.3E+02 0.0051 23.3 10.5 28 119-146 62-91 (157)
495 PRK07200 aspartate/ornithine c 37.5 1.2E+02 0.0026 29.3 7.1 45 125-169 204-254 (395)
496 PRK15454 ethanol dehydrogenase 37.5 1.5E+02 0.0032 28.6 7.8 95 139-242 25-125 (395)
497 PLN02253 xanthoxin dehydrogena 37.5 1.9E+02 0.0041 25.6 8.2 32 116-147 19-50 (280)
498 PRK07904 short chain dehydroge 37.4 2.8E+02 0.0062 24.2 9.2 53 116-168 9-65 (253)
499 PRK06753 hypothetical protein; 37.4 50 0.0011 30.9 4.5 30 119-148 3-32 (373)
500 cd08263 Zn_ADH10 Alcohol dehyd 37.3 2.5E+02 0.0054 26.1 9.2 52 110-164 183-234 (367)
No 1
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=8.5e-61 Score=460.14 Aligned_cols=292 Identities=19% Similarity=0.199 Sum_probs=250.6
Q ss_pred HHHhhccc---------C-CCCCceeeecccccCCCCCCchhHhhhcCCCC---CCCCccchhHhhhcccCCCccccccc
Q 021775 6 RSFLKKRA---------L-TCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP---KDLPATNIKRDVSQLIGRTPLVFLNK 72 (307)
Q Consensus 6 ~~~~~~~~---------c-~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~~~~v~~~~g~TPl~~~~~ 72 (307)
++|..|+. | +||++|++.||++.+++.+.++.+....+++| +|||+... .++++++|+|||+++++
T Consensus 19 l~C~~Cg~~~~~~~~~~C~~cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~wry~~~lp~~~~-~~v~l~eG~TPLv~~~~ 97 (421)
T PRK07591 19 LKCRECGAEYPLGPIHVCEECFGPLEVAYDYDAIRKRVSRESIEAGPKSIWRYRDLLPVPAD-NPVDLGPGFTPLVKADR 97 (421)
T ss_pred EEeCCCCCcCCCCCCccCCCCCCeEEEEechhhhccccChhhhhccccchhcchhhCccccC-CCCcCCCCCCcceEhHH
Confidence 78999984 9 99999999999876654444444444456888 45777543 25999999999999999
Q ss_pred ccccCCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC
Q 021775 73 VSEGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 151 (307)
Q Consensus 73 l~~~~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~ 151 (307)
|++.+|. +||+|+|++|||||||||++.+++.+|++.| .++|+++|+||||+|+|++|+++|++|+||||++++
T Consensus 98 l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g-----~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~ 172 (421)
T PRK07591 98 LARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELG-----FTTVACASTGNLANSVAAHAARAGLDSCVFIPADLE 172 (421)
T ss_pred HHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 9999995 9999999999999999999999999999998 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCC-CCEEEEecC
Q 021775 152 LERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQ-VDIFVMGIG 230 (307)
Q Consensus 152 ~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~-~d~vv~pvG 230 (307)
..|+.+++.|||+|+.++++ ++++.+.+++++++.++++++|++.||+.++ |++|+++||++|+++. ||+||+|+|
T Consensus 173 ~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~eQl~~~~pD~iv~pvG 249 (421)
T PRK07591 173 AGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVAEQLGWRLPDQVVAPLA 249 (421)
T ss_pred HHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHHHHcCCCCCCEEEEeCC
Confidence 99999999999999999974 8899999999998866899999988999997 9999999999999765 999999999
Q ss_pred chhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CCC------cCcccCccCCCCCc-----ccccccc
Q 021775 231 SGGTVSGVGQYLKSQ-------NPNVKIYGVEPAESNILNG----GKP------GPHLITGNGVGFKP-----DILDMDV 288 (307)
Q Consensus 231 ~Gg~~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~~----~~~------~~~~~~gi~~~~~p-----~~~~~~~ 288 (307)
+||+++|++++|+++ .+.+|||+|||++++++.. +.. ..+++++|.++... ..+.+++
T Consensus 250 ~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~ 329 (421)
T PRK07591 250 SGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRT 329 (421)
T ss_pred chHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHh
Confidence 999999999999998 5889999999999877642 221 35677777654321 1233567
Q ss_pred cCcEEEECHHHHHHhccC
Q 021775 289 MEKVLEVSSIANAQTITL 306 (307)
Q Consensus 289 ~d~~v~Vsd~e~~~a~~l 306 (307)
.+.++.|+|+|+++|+++
T Consensus 330 ~g~~v~Vsd~ei~~a~~~ 347 (421)
T PRK07591 330 GGAIEDVTDEEIIEGIKL 347 (421)
T ss_pred CCEEEEECHHHHHHHHHH
Confidence 889999999999999874
No 2
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.4e-60 Score=455.85 Aligned_cols=292 Identities=23% Similarity=0.237 Sum_probs=248.2
Q ss_pred HHHhhccc----------CCCCCceeeecccccCCCCCCchhHhhhcCCCCC---CCCccchhHhhhcccCCCccccccc
Q 021775 6 RSFLKKRA----------LTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPK---DLPATNIKRDVSQLIGRTPLVFLNK 72 (307)
Q Consensus 6 ~~~~~~~~----------c~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~---~lp~~~~~~~v~~~~g~TPl~~~~~ 72 (307)
++|++||. |+||++|++.||++.+++.+....+..+.+++|+ |||+......+++++|+|||+++++
T Consensus 8 ~~C~~Cg~~~~~~~~~~~C~cg~~l~~~~d~~~~~~~~~~~~~~~~~~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~~~ 87 (394)
T PRK08197 8 LECSKCGETYDADQVHNLCKCGKPLLVRYDLEAVKQAVTREALAGRPANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPR 87 (394)
T ss_pred EEECCCCCCCCCCCcceecCCCCeeEEEechhhhhhccchhhhccCCcchhcchhhCCCCCCCCCCccCcCCCCceEhHH
Confidence 78999995 8999999999998765544433333334468885 5776544446999999999999999
Q ss_pred ccccCCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC
Q 021775 73 VSEGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 151 (307)
Q Consensus 73 l~~~~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~ 151 (307)
|++.+|. +||+|+|++|||||||||++.+++.+|+++| .++|+++|+||||+|+|++|+++|++|+||||++++
T Consensus 88 l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~ 162 (394)
T PRK08197 88 LGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELG-----VKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAP 162 (394)
T ss_pred HHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 9988885 9999999999999999999999999999988 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCC-CCEEEEecC
Q 021775 152 LERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQ-VDIFVMGIG 230 (307)
Q Consensus 152 ~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~-~d~vv~pvG 230 (307)
..|+.+++.|||+|+.++++ ++++.+.+++++++. ++|+++++.||++++ |++|+++||++|+++. ||+||+|+|
T Consensus 163 ~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~eQl~~~~pD~vvvpvG 238 (394)
T PRK08197 163 EITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELAEQLGWRLPDVILYPTG 238 (394)
T ss_pred HHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHHHHcCCCCCCEEEEeCC
Confidence 99999999999999999874 888899999988886 899999999999998 9999999999999765 999999999
Q ss_pred chhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CC-------CcCcccCccCCCCCcc--c-c--ccc
Q 021775 231 SGGTVSGVGQYLKSQ-------NPNVKIYGVEPAESNILNG----GK-------PGPHLITGNGVGFKPD--I-L--DMD 287 (307)
Q Consensus 231 ~Gg~~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~~----~~-------~~~~~~~gi~~~~~p~--~-~--~~~ 287 (307)
+||+++|++++|+++ .+.+||++|||++++++.. +. ...++++|+.++.... . + .++
T Consensus 239 ~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~ 318 (394)
T PRK08197 239 GGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRE 318 (394)
T ss_pred ChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHH
Confidence 999999999999997 3889999999999987632 22 1346667776543211 1 1 246
Q ss_pred ccCcEEEECHHHHHHhccC
Q 021775 288 VMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 288 ~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+.++.|+|+|+++++++
T Consensus 319 ~~g~~v~V~d~e~~~a~~~ 337 (394)
T PRK08197 319 TGGCAIAVSDDAILAAQRE 337 (394)
T ss_pred hCCEEEEeCHHHHHHHHHH
Confidence 7788999999999999874
No 3
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-59 Score=423.90 Aligned_cols=247 Identities=51% Similarity=0.874 Sum_probs=235.0
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
.+...+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++||.+ ||++||||+|++||+.|+
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~vaa 82 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVAA 82 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHHH
Confidence 4678889999999999998888999999999999999999999999999999999999985 999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCC-hHHHHHHHHHHHHhCCC-cEEcCCCCChhHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG-MGGTVKKAQELLESTPN-AFMLQQFSNPANTRVHFETTGPEI 214 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~np~~~~~G~~t~~~Ei 214 (307)
.+|+++++|||++++.+|+++|++|||+|++++...+ +..+.+++++++++.++ .++.+||+||.|+++||.|+|.||
T Consensus 83 ~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 83 AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999998445 88999999999999888 777889999999999999999999
Q ss_pred HHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEE
Q 021775 215 WEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLE 294 (307)
Q Consensus 215 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~ 294 (307)
++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+..|. +++.++|||.+++|.+++.+.+|+++.
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~ 241 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIR 241 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEE
Confidence 9999888999999999999999999999999999999999999998877666 899999999999998899999999999
Q ss_pred ECHHHHHHhcc
Q 021775 295 VSSIANAQTIT 305 (307)
Q Consensus 295 Vsd~e~~~a~~ 305 (307)
|+|+|+++++|
T Consensus 242 V~d~~A~~~~r 252 (300)
T COG0031 242 VSDEEAIATAR 252 (300)
T ss_pred ECHHHHHHHHH
Confidence 99999999887
No 4
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.9e-59 Score=444.39 Aligned_cols=253 Identities=57% Similarity=1.029 Sum_probs=237.7
Q ss_pred hhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 021775 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAF 133 (307)
Q Consensus 54 ~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 133 (307)
...++...+|+|||++++.+++..+.+||+|+|++|||||||||++.++|.+++++|.+.||.++||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 45678999999999999999888888999999999999999999999999999999999999778999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHH
Q 021775 134 MAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPE 213 (307)
Q Consensus 134 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~E 213 (307)
+|+.+|++++||||++++..|+++++.|||+|+.+++..++.++++.+++++++.+++||++||+||+|+++||+|+|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876567788999999988866899999999999997899999999
Q ss_pred HHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEE
Q 021775 214 IWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVL 293 (307)
Q Consensus 214 i~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v 293 (307)
|++|++++||+||+|+||||+++|++++||+.+|++|||||||++++.+..+++.++.++|++.+++|++++.+++|+++
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv 352 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEE
Confidence 99999778999999999999999999999999999999999999998887777888889999999889988888999999
Q ss_pred EECHHHHHHhccC
Q 021775 294 EVSSIANAQTITL 306 (307)
Q Consensus 294 ~Vsd~e~~~a~~l 306 (307)
.|+|+|++++++.
T Consensus 353 ~VsD~ea~~a~r~ 365 (429)
T PLN03013 353 AISSEEAIETAKQ 365 (429)
T ss_pred EECHHHHHHHHHH
Confidence 9999999999863
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.9e-58 Score=435.78 Aligned_cols=261 Identities=86% Similarity=1.314 Sum_probs=238.8
Q ss_pred CCCCCccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCC
Q 021775 46 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSG 125 (307)
Q Consensus 46 ~~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsG 125 (307)
...+|..+..+++++.+|+|||+++++++...|++||+|+|++|||||||||++.++|.+++++|.+.||.++||++|+|
T Consensus 41 ~~~~~~~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsG 120 (368)
T PLN02556 41 PKDLPGTKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSG 120 (368)
T ss_pred hhhCCcchhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCc
Confidence 34566544557899999999999999998888899999999999999999999999999999999999998889999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 126 NMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 126 N~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
|||+|+|++|+.+|++|+||||+.++..|+.+++.|||+|+.++...++.+.++.+++++++.+++++++||+||.++++
T Consensus 121 N~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~ 200 (368)
T PLN02556 121 NMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQV 200 (368)
T ss_pred hHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999998654456788889889888778999999999999978
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCccccc
Q 021775 206 HFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILD 285 (307)
Q Consensus 206 G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~ 285 (307)
||+|+|+||++|+.+.+|+||+|+|||||++|++++||+.+|++|||||||++++.+..+.+..+.++|++.+..|+.++
T Consensus 201 g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~ 280 (368)
T PLN02556 201 HFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILD 280 (368)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccc
Confidence 99999999999986689999999999999999999999999999999999999988877777777788898887777788
Q ss_pred ccccCcEEEECHHHHHHhccC
Q 021775 286 MDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 286 ~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+++|+++.|+|+|++++++.
T Consensus 281 ~~~~d~~v~Vsd~ea~~a~r~ 301 (368)
T PLN02556 281 MDVMEKVLEVSSEDAVNMARE 301 (368)
T ss_pred hhhCCeEEEECHHHHHHHHHH
Confidence 889999999999999999863
No 6
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.6e-58 Score=430.04 Aligned_cols=251 Identities=60% Similarity=1.054 Sum_probs=232.4
Q ss_pred HhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
..++..+|+|||+++++++...+.+||+|+|++|||||||||++.+++..+.+.|.+.+|.++||++|+||||+|+|++|
T Consensus 7 ~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a 86 (322)
T PLN02565 7 KDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMA 86 (322)
T ss_pred hhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHH
Confidence 35788999999999998876667799999999999999999999999999999998888877899999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHH
Q 021775 136 AMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIW 215 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~ 215 (307)
+.+|++|+||||++++..|+.+++.|||+|+.+++..+++++.+.+++++++.+++|+++||+||.|+++||+|+|+||+
T Consensus 87 ~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~ 166 (322)
T PLN02565 87 AAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIW 166 (322)
T ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987655688899999998876688999999999998889999999999
Q ss_pred HhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEE
Q 021775 216 EDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295 (307)
Q Consensus 216 ~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~V 295 (307)
+|+++.||+||+|+|+||+++|++++||+++|++|||+|||++++++..+++.++.++|++.+..|..+..+.+|+++.|
T Consensus 167 ~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V 246 (322)
T PLN02565 167 KGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQV 246 (322)
T ss_pred HhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEE
Confidence 99976799999999999999999999999999999999999999988877777888899999877777777889999999
Q ss_pred CHHHHHHhccC
Q 021775 296 SSIANAQTITL 306 (307)
Q Consensus 296 sd~e~~~a~~l 306 (307)
+|+|++++++.
T Consensus 247 ~d~ea~~a~~~ 257 (322)
T PLN02565 247 SSDEAIETAKL 257 (322)
T ss_pred CHHHHHHHHHH
Confidence 99999999863
No 7
>PLN02569 threonine synthase
Probab=100.00 E-value=1.5e-58 Score=448.72 Aligned_cols=295 Identities=15% Similarity=0.133 Sum_probs=244.8
Q ss_pred HHHhhccc----------CCCCCceeeecccccCCC---CCCchhHhh--------hcCCCCC----CCCccchhHhhhc
Q 021775 6 RSFLKKRA----------LTCSEPMLMRRLVSSQPA---PVDSSSFAQ--------RLRDLPK----DLPATNIKRDVSQ 60 (307)
Q Consensus 6 ~~~~~~~~----------c~Cg~~l~~~y~~~~~~~---~~~~~~~~~--------~~~~~~~----~lp~~~~~~~v~~ 60 (307)
+.|..|+. |.||++|++.||++.++. .+.++.+.. ..+++|+ +||+......+++
T Consensus 50 l~C~~Cg~~y~~~~~~~~C~cgg~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~wry~~~~lP~~~~~~~vsl 129 (484)
T PLN02569 50 LECPLTGEKYSLDEVVYRSKSGGLLDVRHDMEALKRYDGKYWRALFDSRVGKTTWPYGSGVWSKKEWVLPEIDDDDIVSL 129 (484)
T ss_pred cEeCCCCCcCCCccccccCCCCCeEEEecchhhhccccchhhhhhHhcccccccCCCCCCccccccccCCCCCcccceec
Confidence 67888874 899999999999875522 112222222 2257885 4676554456999
Q ss_pred ccCCCccccccccccc-CCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 021775 61 LIGRTPLVFLNKVSEG-CGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMK 138 (307)
Q Consensus 61 ~~g~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 138 (307)
++|+|||+++++|++. +|. +||+|+|++|||||||||++.++++.+++.|........|+++||||||+|+|++|+++
T Consensus 130 ~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~ 209 (484)
T PLN02569 130 FEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAA 209 (484)
T ss_pred CCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhc
Confidence 9999999999999988 885 89999999999999999999999999998775322124699999999999999999999
Q ss_pred CCeEEEEECCC-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHh
Q 021775 139 GYKMVLTMPSY-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWED 217 (307)
Q Consensus 139 G~~~~ivvp~~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q 217 (307)
|++++||||++ .+..|+.+++.|||+|+.+++ +++++++.+++++++. ++|+++++ ||++++ ||+|+++||++|
T Consensus 210 Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~EI~eQ 284 (484)
T PLN02569 210 GIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIEILQQ 284 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHHHHHH
Confidence 99999999996 788999999999999999997 4999999999998886 78999998 999998 999999999999
Q ss_pred hCCC-CCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc----CCC-------CcCcccCccCCCC
Q 021775 218 TMGQ-VDIFVMGIGSGGTVSGVGQYLKSQN------PNVKIYGVEPAESNILN----GGK-------PGPHLITGNGVGF 279 (307)
Q Consensus 218 ~~~~-~d~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~-------~~~~~~~gi~~~~ 279 (307)
++++ ||+||+|+|+||+++|++++||++. +.+|||+||+++++++. .|. ..+|++++|+.+.
T Consensus 285 l~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~ 364 (484)
T PLN02569 285 FDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD 364 (484)
T ss_pred cCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC
Confidence 9875 9999999999999999999999974 46899999999998764 232 2568889988773
Q ss_pred Cccccc------ccccCcEEEECHHHHHHhccC
Q 021775 280 KPDILD------MDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 ~p~~~~------~~~~d~~v~Vsd~e~~~a~~l 306 (307)
|..+. ++..+.++.|+|+|+++|+++
T Consensus 365 -P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~ 396 (484)
T PLN02569 365 -PVSIDRAVYALKESNGIVEEATEEELMDAQAE 396 (484)
T ss_pred -CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 44332 233455799999999999863
No 8
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.5e-58 Score=432.33 Aligned_cols=276 Identities=20% Similarity=0.199 Sum_probs=238.4
Q ss_pred HHHhhccc---------CCCCCceeeecccccCCCCCCchhHhhhcCCCC---CCCCccchhHhhhcccCCCcccccccc
Q 021775 6 RSFLKKRA---------LTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP---KDLPATNIKRDVSQLIGRTPLVFLNKV 73 (307)
Q Consensus 6 ~~~~~~~~---------c~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~~~~v~~~~g~TPl~~~~~l 73 (307)
++|++|+. |.||++|++.||++..... +..+++| +|||+.+. ..+++++|.|||+++.
T Consensus 2 l~C~~Cg~~~~~~~~~~C~c~~~l~~~~~~~~~~~~-------~~~~~~wry~~~lP~~~~-~~~sl~eg~Tpl~~~~-- 71 (347)
T PRK08329 2 LRCTKCGRTYEEKFKLRCDCGGTLLVEREYGSFDSP-------REYLDMRRYIDYLPVDEE-FLPHLTPPITPTVKRS-- 71 (347)
T ss_pred cCcCCCCCCcCCCCceecCCCCcEEEEecccccccc-------ccccchhhhHHhCCCCCC-CCCcCCCCCCccccCC--
Confidence 57899985 8999999999998753211 1135788 57888653 3589999999999973
Q ss_pred cccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHH
Q 021775 74 SEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLE 153 (307)
Q Consensus 74 ~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~ 153 (307)
.+||+|+|++|||||||||++.+++.++++.| .++|+++|+||||+|+|++|+++|++|+||||++++..
T Consensus 72 -----~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~ 141 (347)
T PRK08329 72 -----IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEG-----INEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKE 141 (347)
T ss_pred -----CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcC-----CCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHH
Confidence 48999999999999999999999999999998 45799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchh
Q 021775 154 RRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGG 233 (307)
Q Consensus 154 k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg 233 (307)
|+.+++.|||+|+.++++ ++++.+.+++++++. +++|++++.||++++ ||+|+++||++|++ .||+||+|+|+||
T Consensus 142 k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eql~-~pD~vvvpvG~Gg 216 (347)
T PRK08329 142 KISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQIG-VPDYAFVPVGSGT 216 (347)
T ss_pred HHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHHcC-CCCEEEEeCCcHH
Confidence 999999999999999874 777888888888885 788899999999998 99999999999995 7999999999999
Q ss_pred HHHHHHHHHHhcC------CCcEEEEEeCCCCccccC-CCCcCcccCccCCCCCcc-----cccccccCcEEEECHHHHH
Q 021775 234 TVSGVGQYLKSQN------PNVKIYGVEPAESNILNG-GKPGPHLITGNGVGFKPD-----ILDMDVMEKVLEVSSIANA 301 (307)
Q Consensus 234 ~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~~-~~~~~~~~~gi~~~~~p~-----~~~~~~~d~~v~Vsd~e~~ 301 (307)
+++|++++||++. +.+|||+|||++++++.. .....++++|++++..+. .+.+++.+.++.|+|+|++
T Consensus 217 ~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~ 296 (347)
T PRK08329 217 LFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETR 296 (347)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHH
Confidence 9999999999974 568999999999887754 234678899998876432 2345677889999999999
Q ss_pred HhccC
Q 021775 302 QTITL 306 (307)
Q Consensus 302 ~a~~l 306 (307)
+|+++
T Consensus 297 ~a~~~ 301 (347)
T PRK08329 297 AALHW 301 (347)
T ss_pred HHHHH
Confidence 99874
No 9
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=3e-58 Score=430.39 Aligned_cols=263 Identities=21% Similarity=0.225 Sum_probs=222.7
Q ss_pred HHHhhccc---------C-CCCCceeeecccccCCCCCCchhHhhhcCCCC-CCCCccchhHhhhcccCCCccccccccc
Q 021775 6 RSFLKKRA---------L-TCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP-KDLPATNIKRDVSQLIGRTPLVFLNKVS 74 (307)
Q Consensus 6 ~~~~~~~~---------c-~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~v~~~~g~TPl~~~~~l~ 74 (307)
++|.+|+. | +||++|++.||++.. .++| ++||+.. ..+++++|+|||++.+
T Consensus 4 ~~C~~Cg~~~~~~~~~~C~~cg~~l~~~~d~~~~-------------~~~~~~~lp~~~--~~vslgeG~TPLv~~~--- 65 (338)
T PRK06450 4 EVCMKCGKERESIYEIRCKKCGGPFEILIDFEFD-------------KNLERKNFPYIK--HFISLGEGRTPLIKKG--- 65 (338)
T ss_pred eEECCcCCcCCCcccccCCcCCCEeEEeeccccc-------------chhhHhhCCCCc--CCCCCCCCCCCceecC---
Confidence 57889984 9 899999999996531 1355 7888865 2699999999999975
Q ss_pred ccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHH
Q 021775 75 EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLER 154 (307)
Q Consensus 75 ~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k 154 (307)
+||+|+|++|||||||||++.+++++++++| .++|+++||||+|.|+|++|+++|++++||||++++..|
T Consensus 66 -----~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g-----~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k 135 (338)
T PRK06450 66 -----NIWFKLDFLNPTGSYKDRGSVTLISYLAEKG-----IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGK 135 (338)
T ss_pred -----CEEEEecCCCCcCCCHHHHHHHHHHHHHHcC-----CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 6999999999999999999999999999987 457999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC-CCCEEEEecCchh
Q 021775 155 RVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG-QVDIFVMGIGSGG 233 (307)
Q Consensus 155 ~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg 233 (307)
+.+++.|||+|+.++++ ++++.+. +++. +.+|++++.||++++ ||+|+++||++|+++ .||+||+|+|+||
T Consensus 136 ~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~eql~~~~pD~vvvpvG~Gg 207 (338)
T PRK06450 136 LKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAKDLDWKIPNYVFIPVSAGT 207 (338)
T ss_pred HHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHHHcCCCCCCEEEEECCchH
Confidence 99999999999999874 6665443 4444 778999999999998 999999999999975 4999999999999
Q ss_pred HHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCC-----CcCcccCccCCCCCcccc------cccccCcE
Q 021775 234 TVSGVGQYLKSQNP------NVKIYGVEPAESNILN----GGK-----PGPHLITGNGVGFKPDIL------DMDVMEKV 292 (307)
Q Consensus 234 ~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~----~~~-----~~~~~~~gi~~~~~p~~~------~~~~~d~~ 292 (307)
+++|++++|+++++ .+|||+|||++++++. .+. ...+++++|.++. |... .++. +++
T Consensus 208 ll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~ 285 (338)
T PRK06450 208 LLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GEC 285 (338)
T ss_pred HHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcE
Confidence 99999999999874 4899999999988764 211 1356777776653 3222 2344 789
Q ss_pred EEECHHHHHHhccC
Q 021775 293 LEVSSIANAQTITL 306 (307)
Q Consensus 293 v~Vsd~e~~~a~~l 306 (307)
+.|+|+|+++|+++
T Consensus 286 v~V~d~ei~~a~~~ 299 (338)
T PRK06450 286 IVVSDNEIVEAWKE 299 (338)
T ss_pred EEECHHHHHHHHHH
Confidence 99999999999874
No 10
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.1e-58 Score=441.19 Aligned_cols=281 Identities=22% Similarity=0.208 Sum_probs=240.1
Q ss_pred HHHhhccc----------C-CCCCceeeecccccCCCCCCchhHhhhcCCCC---CCCCccchhHhhhcccCCCcccccc
Q 021775 6 RSFLKKRA----------L-TCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP---KDLPATNIKRDVSQLIGRTPLVFLN 71 (307)
Q Consensus 6 ~~~~~~~~----------c-~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~~~~v~~~~g~TPl~~~~ 71 (307)
++|+.|+. | +||++|++.||++.+.. ..+.+++| +|||+. ...+++++|+|||++++
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~l~~~y~~~~~~~-------~~~~~~~wry~~~lp~~--~~~v~l~~G~TPLv~~~ 74 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGLLEVIYDLDKIFD-------KLRGRGVWRYKELLPVK--KKIVSLNEGGTPLYRCP 74 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCeEEEEecchhhhh-------ccCCcceeeehhhcCCC--CCcccCCCCCCCeEEch
Confidence 67899985 9 99999999999764321 12346788 567774 23799999999999999
Q ss_pred cccccCCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-
Q 021775 72 KVSEGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY- 149 (307)
Q Consensus 72 ~l~~~~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~- 149 (307)
+|++.+|. +||+|+|++|||||||||++.+++++++++| .++|+++|+||||+|+|++|+++|++++||||++
T Consensus 75 ~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~ 149 (397)
T PRK06260 75 NLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELG-----VKTVACASTGNTSASLAAYAARAGLKCYVLLPAGK 149 (397)
T ss_pred hhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 99988888 9999999999999999999999999999998 3569999999999999999999999999999987
Q ss_pred CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC-CCCEEEEe
Q 021775 150 TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG-QVDIFVMG 228 (307)
Q Consensus 150 ~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~-~~d~vv~p 228 (307)
++..|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||++++ ||+|+++||++|+++ .||+||+|
T Consensus 150 ~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~Ei~eQl~~~~pd~vvvp 224 (397)
T PRK06260 150 VALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFEIADQLGWEVPDRVVLP 224 (397)
T ss_pred ccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHHHHHHhCCCCCCEEEEe
Confidence 789999999999999999987 4889999999999886 79999887 999997 999999999999977 69999999
Q ss_pred cCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc----CCCC-------cCcccCccCCCCCccc------cc
Q 021775 229 IGSGGTVSGVGQYLKSQN------PNVKIYGVEPAESNILN----GGKP-------GPHLITGNGVGFKPDI------LD 285 (307)
Q Consensus 229 vG~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gi~~~~~p~~------~~ 285 (307)
+|+||+++|++++|++++ +.+|||||||++++++. .+.. ..++++++.++. |.. +.
T Consensus 225 vG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l 303 (397)
T PRK06260 225 VGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAI 303 (397)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHH
Confidence 999999999999999986 34899999999998763 2221 345667766543 221 23
Q ss_pred ccccCcEEEECHHHHHHhccC
Q 021775 286 MDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 286 ~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++..+.++.|+|+|+++++++
T Consensus 304 ~~~~g~~v~V~d~e~~~a~~~ 324 (397)
T PRK06260 304 RESGGTAEAVSDEEILDAQKL 324 (397)
T ss_pred HHHCCEEEEECHHHHHHHHHH
Confidence 456688999999999999874
No 11
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=3.3e-57 Score=438.33 Aligned_cols=283 Identities=21% Similarity=0.188 Sum_probs=238.1
Q ss_pred HHHhhccc---------CCCCCceeeecccccCCCCCCchhHhhhcCCCCC---CCCccchhHhhhcccCCCcccccccc
Q 021775 6 RSFLKKRA---------LTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPK---DLPATNIKRDVSQLIGRTPLVFLNKV 73 (307)
Q Consensus 6 ~~~~~~~~---------c~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~---~lp~~~~~~~v~~~~g~TPl~~~~~l 73 (307)
++|.+||. |+||++|++.||++.+... .+..+.+++|+ |||+.. ..+++++|+|||+++ ++
T Consensus 2 l~C~~Cg~~~~~~~~~~C~c~~~l~~~y~~~~~~~~----~~~~~~~~~wry~~~lp~~~--~~v~l~~G~TPLv~~-~~ 74 (442)
T PRK05638 2 MKCPKCGREYNSYIPPFCICGELLEIIYDYSSVDVR----KWKNRDPGVWRYKELLPQVK--KIISLGEGGTPLIRA-RI 74 (442)
T ss_pred eEeCCCCCCCCCCCceecCCCCcEEEEecccccchh----hhccCCCChhhhhhhCCCcC--CccccCCCCCcEEcc-cc
Confidence 46888884 8999999999997654311 22333468995 567654 458999999999999 47
Q ss_pred cccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHH
Q 021775 74 SEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLE 153 (307)
Q Consensus 74 ~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~ 153 (307)
++.+|.+||+|+|++|||||||||++.+++++|++.| .++|+++|+||||+|+|++|+++|++|+||||++++..
T Consensus 75 ~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~ 149 (442)
T PRK05638 75 SEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYA-----ANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKG 149 (442)
T ss_pred hHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcC-----CCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHH
Confidence 7778889999999999999999999999999999887 46799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchh
Q 021775 154 RRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGG 233 (307)
Q Consensus 154 k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg 233 (307)
|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++.||++++ ||+|+|+||++|++ ||+||+|+|+||
T Consensus 150 k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~eq~~--pD~vv~pvG~Gg 223 (442)
T PRK05638 150 KLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWEEIN--PTHVIVPTGSGS 223 (442)
T ss_pred HHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHHHHC--cCEEEEeCCchH
Confidence 99999999999999986 4899999999998875 899999999999998 99999999999995 999999999999
Q ss_pred HHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCC--CcCcccCccCCCCCcc-----cccccccCcEEEEC
Q 021775 234 TVSGVGQYLKSQNP------NVKIYGVEPAESNILN----GGK--PGPHLITGNGVGFKPD-----ILDMDVMEKVLEVS 296 (307)
Q Consensus 234 ~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~----~~~--~~~~~~~gi~~~~~p~-----~~~~~~~d~~v~Vs 296 (307)
+++|++++|+++++ .+|||||||++++++. .+. ...+.++|+.++..+. .+.+++.+.++.|+
T Consensus 224 ~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~ 303 (442)
T PRK05638 224 YLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVN 303 (442)
T ss_pred HHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEEC
Confidence 99999999999875 3799999999998764 222 2345667765542111 12345567789999
Q ss_pred HHHHHHhccC
Q 021775 297 SIANAQTITL 306 (307)
Q Consensus 297 d~e~~~a~~l 306 (307)
|+++.+++++
T Consensus 304 d~~i~~a~~~ 313 (442)
T PRK05638 304 EEEIMAGEKL 313 (442)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 12
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.1e-56 Score=414.68 Aligned_cols=250 Identities=51% Similarity=0.925 Sum_probs=229.9
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
.+...+|+|||++++++++..|.+||+|+|++|||||||||++.+++..++++|.+.||.++||++|+||||+|+|++|+
T Consensus 10 ~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~ 89 (323)
T PLN00011 10 DVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGA 89 (323)
T ss_pred hHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Confidence 46778999999999999877778999999999999999999999999999999999998777999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~ 216 (307)
.+|++|+||||+++++.|+++++.|||+|+.++...+.++.++.+++++++.+++|+++||+||.++..||+|+|+||++
T Consensus 90 ~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~ 169 (323)
T PLN00011 90 ARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169 (323)
T ss_pred HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875445567888888888766789999999998887799999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEEC
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vs 296 (307)
|+.++||+||+|+||||+++|++++||+++|++|||||||++++++..+++..+.++|++.+..|..+....+|+++.|+
T Consensus 170 q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~ 249 (323)
T PLN00011 170 DSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVT 249 (323)
T ss_pred hcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEEC
Confidence 99667999999999999999999999999999999999999998888777778889999988777777778899999999
Q ss_pred HHHHHHhccC
Q 021775 297 SIANAQTITL 306 (307)
Q Consensus 297 d~e~~~a~~l 306 (307)
|+|+++++++
T Consensus 250 d~e~~~a~~~ 259 (323)
T PLN00011 250 GEEAIETAKL 259 (323)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 13
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2e-55 Score=406.28 Aligned_cols=247 Identities=55% Similarity=0.924 Sum_probs=226.3
Q ss_pred hcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 021775 59 SQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMK 138 (307)
Q Consensus 59 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 138 (307)
...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..++++|.+.+|. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 4568999999999999988899999999999999999999999999999999877765 499999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhh
Q 021775 139 GYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDT 218 (307)
Q Consensus 139 G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~ 218 (307)
|++|+||||++++..|+.+++.+||+|+.++++.+++++.+.+++++++.+++++++||+||.++.+||+|+++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999999886568899999999986679999999999999
Q ss_pred CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEECHH
Q 021775 219 MGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSI 298 (307)
Q Consensus 219 ~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd~ 298 (307)
++.||+||+|+|+||+++|++++||+++|.+|||||||++++++..+.+..+.+.+++.+..|+.+..+++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999888776666666778888777887888889999999999
Q ss_pred HHHHhccC
Q 021775 299 ANAQTITL 306 (307)
Q Consensus 299 e~~~a~~l 306 (307)
|+++++++
T Consensus 241 e~~~a~~~ 248 (299)
T TIGR01136 241 DAIETARR 248 (299)
T ss_pred HHHHHHHH
Confidence 99999874
No 14
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=4.9e-55 Score=403.53 Aligned_cols=246 Identities=56% Similarity=0.919 Sum_probs=223.0
Q ss_pred hcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 021775 59 SQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMK 138 (307)
Q Consensus 59 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 138 (307)
...+|+|||+++++ ....|.+||+|+|++|||||||||++.+++.+++++|.+.+|. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 5567889999999999999999999999999999999877765 499999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCC-cEEcCCCCChhHHHHHHHHHHHHHHHh
Q 021775 139 GYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPN-AFMLQQFSNPANTRVHFETTGPEIWED 217 (307)
Q Consensus 139 G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~np~~~~~G~~t~~~Ei~~q 217 (307)
|++|+||||+++++.|+++++.|||+|+.++++.++.++.+.+++++++.++ +++++||+||.++.+||+|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999764456888899999888743 558999999998778999999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEECH
Q 021775 218 TMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297 (307)
Q Consensus 218 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd 297 (307)
+++.||+||+|+|+||+++|++++|++++|++|||+|||++++.+...++..+.++|++.+.+|..+....+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999988776666777888998877777777788999999999
Q ss_pred HHHHHhccC
Q 021775 298 IANAQTITL 306 (307)
Q Consensus 298 ~e~~~a~~l 306 (307)
+|+++++++
T Consensus 240 ~e~~~a~~~ 248 (298)
T TIGR01139 240 EEAIETARR 248 (298)
T ss_pred HHHHHHHHH
Confidence 999999874
No 15
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=4.6e-55 Score=402.87 Aligned_cols=242 Identities=43% Similarity=0.710 Sum_probs=216.2
Q ss_pred HhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
+++...+|+|||+++++|+...|.+||+|+|++|||||||||++.+++.+++++|.+.+|. +|+++|+||||+|+|++|
T Consensus 4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a 82 (296)
T PRK11761 4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIA 82 (296)
T ss_pred ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHH
Confidence 4677889999999999999888899999999999999999999999999999999887775 499999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHH
Q 021775 136 AMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIW 215 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~ 215 (307)
+.+|++|+||||+++++.|+++++.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||+|+|+||+
T Consensus 83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~ 161 (296)
T PRK11761 83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIW 161 (296)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHH
Confidence 99999999999999999999999999999999997556888889999998886 78999999999998878999999999
Q ss_pred HhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEE
Q 021775 216 EDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295 (307)
Q Consensus 216 ~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~V 295 (307)
+|+++.+|+||+|+|+||+++|++++||+++|++|||||||++++.+.+ +.++.....+..++...+|+++.|
T Consensus 162 eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V 234 (296)
T PRK11761 162 RQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDV 234 (296)
T ss_pred HhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEE
Confidence 9997679999999999999999999999999999999999999876532 112222223445567789999999
Q ss_pred CHHHHHHhccC
Q 021775 296 SSIANAQTITL 306 (307)
Q Consensus 296 sd~e~~~a~~l 306 (307)
+|+|+++++++
T Consensus 235 ~d~e~~~a~~~ 245 (296)
T PRK11761 235 SQQEAENTMRR 245 (296)
T ss_pred CHHHHHHHHHH
Confidence 99999999874
No 16
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=405.59 Aligned_cols=248 Identities=25% Similarity=0.320 Sum_probs=225.2
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+.+|||++++.|++.+|.+||+|+|++||+||||.||+++.++++.+++.. ..+||++|+||||+++
T Consensus 13 ~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGv 89 (347)
T COG1171 13 LAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGV 89 (347)
T ss_pred HHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHH
Confidence 4456789999999999999999999999999999999999999999999999987633221 3459999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++++||||.++|..|+..++.|||+|++++.. |+++.+.++++++++ |+.|+++|++|+.+ +||+|++
T Consensus 90 A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~ 165 (347)
T COG1171 90 AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIA 165 (347)
T ss_pred HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHH
Confidence 9999999999999999999999999999999999999974 999999999999998 99999999999988 5999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC------cCcccCccCCCC--
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP------GPHLITGNGVGF-- 279 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~------~~~~~~gi~~~~-- 279 (307)
+||++|++..||+||||+|+||+++|++.++|.+.|++|||||||++++++. .|+. ..++++|+++..
T Consensus 166 lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g 245 (347)
T COG1171 166 LEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPG 245 (347)
T ss_pred HHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCC
Confidence 9999999655799999999999999999999999999999999999999764 3422 568899999754
Q ss_pred -CcccccccccCcEEEECHHHHHHhccC
Q 021775 280 -KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 -~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+|.+.++++|+++.|+|+|+.++|++
T Consensus 246 ~~tf~i~~~~vd~~v~V~e~ei~~am~~ 273 (347)
T COG1171 246 DLTFEILRELVDDIVLVDEDEICAAMRD 273 (347)
T ss_pred HHHHHHHHHcCCcEEEECHHHHHHHHHH
Confidence 467788999999999999999999974
No 17
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=6.2e-54 Score=394.38 Aligned_cols=240 Identities=41% Similarity=0.713 Sum_probs=214.0
Q ss_pred hhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHH
Q 021775 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAM 137 (307)
Q Consensus 58 v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~ 137 (307)
+...+|+|||++++++++..|.+||+|+|++|||||||||++.+++.++.++|.+.+|. +|+++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 45678999999999999888899999999999999999999999999999999887775 49999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHh
Q 021775 138 KGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWED 217 (307)
Q Consensus 138 ~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q 217 (307)
+|++|+||||++++..|+.+++.|||+|+.++++.+++++.+.+++++++. +.+|++||+|+.++..||+|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987555788889999999887 5568999999999887889999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEECH
Q 021775 218 TMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297 (307)
Q Consensus 218 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd 297 (307)
+++++|+||+|+||||+++|++++||+++|++|||+|||++++.+.+ ..+++.+..|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97679999999999999999999999999999999999999876532 12333333444556677999999999
Q ss_pred HHHHHhccC
Q 021775 298 IANAQTITL 306 (307)
Q Consensus 298 ~e~~~a~~l 306 (307)
+|++++++.
T Consensus 233 ~e~~~a~~~ 241 (290)
T TIGR01138 233 RDAENTMRE 241 (290)
T ss_pred HHHHHHHHH
Confidence 999999863
No 18
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.4e-53 Score=392.61 Aligned_cols=243 Identities=53% Similarity=0.887 Sum_probs=221.1
Q ss_pred CCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeE
Q 021775 63 GRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKM 142 (307)
Q Consensus 63 g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~ 142 (307)
|+|||+++++|++..|.+||+|+|++|||||||+|++.+++.+++++|.+.+|. +|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeE
Confidence 689999999999988999999999999999999999999999999999765554 5999999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHHcCCeEEEeCCCC--ChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC
Q 021775 143 VLTMPSYTSLERRVTMRAFGADLILTDPAK--GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG 220 (307)
Q Consensus 143 ~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~ 220 (307)
+||||.++++.|+++++.+||+|+.++... +.+++.+.+++++++.++++|+++|+||.+++.|++|+++||++|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998752 347888899999887668999999999999984445999999999976
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEECHHHH
Q 021775 221 QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSIAN 300 (307)
Q Consensus 221 ~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd~e~ 300 (307)
.||+||+|+|+||+++|++++|++++|.++||||||++++.+.......+.++||+.+..++.+...++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 79999999999999999999999999999999999999988755555678899999887777777788999999999999
Q ss_pred HHhccC
Q 021775 301 AQTITL 306 (307)
Q Consensus 301 ~~a~~l 306 (307)
++++++
T Consensus 240 ~~a~~~ 245 (291)
T cd01561 240 FAMARR 245 (291)
T ss_pred HHHHHH
Confidence 999864
No 19
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.5e-53 Score=398.87 Aligned_cols=251 Identities=42% Similarity=0.673 Sum_probs=218.5
Q ss_pred hHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 021775 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFM 134 (307)
Q Consensus 55 ~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 134 (307)
+..++..+|+|||++++++++.+|.+||+|+|++|||||||||++.+++.+++++|.+.+|. +|+++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG-TIVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999877765 49999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-----C-hHHHHHHHHHHHHhC-CCcEEcCCCCChhHHHHHH
Q 021775 135 AAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-----G-MGGTVKKAQELLEST-PNAFMLQQFSNPANTRVHF 207 (307)
Q Consensus 135 a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-----~-~~~~~~~a~~~~~~~-~~~~~~~~~~np~~~~~G~ 207 (307)
|+++|++|+||||+.+++.|+.+++.|||+|+.+++.. + .+.+.+.++++.++. .+++|++||+||.+++.||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 99999999999999999999999999999999998631 1 223344455554443 2789999999999876799
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc---CCC---CcCcccCccCCCCCc
Q 021775 208 ETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN---GGK---PGPHLITGNGVGFKP 281 (307)
Q Consensus 208 ~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~---~~~---~~~~~~~gi~~~~~p 281 (307)
+|+++||++|+++.+|+||+|+|+||+++|++++||+++|++|||+|||++++.+. .+. ..++.++||+++..+
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 99999999999767999999999999999999999999999999999999985432 122 356889999988777
Q ss_pred ccccccccCcEEEECHHHHHHhccC
Q 021775 282 DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 ~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+....+|+++.|+|+|+++++++
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~ 267 (330)
T PRK10717 243 ANLEGAPIDDAIRIPDEEALSTAYR 267 (330)
T ss_pred cccChhhCCEEEEECHHHHHHHHHH
Confidence 7766777899999999999999864
No 20
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.7e-53 Score=404.78 Aligned_cols=250 Identities=32% Similarity=0.534 Sum_probs=214.9
Q ss_pred HhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
..+...+|+|||+++++|+...|.+||+|+|++|||||||||++.++|.+|.++|.++++.. |+++||||||+|+|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHHHHH
Confidence 45777889999999999998889999999999999999999999999999999998877754 88899999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-----CChH-HHH---HHHHHHHHh-------------------
Q 021775 136 AMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-----KGMG-GTV---KKAQELLES------------------- 187 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-----~~~~-~~~---~~a~~~~~~------------------- 187 (307)
+.+|++|+||||+++++.|+++++.|||+|+.+++. .++. .+. ..+.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 1221 111 224444433
Q ss_pred -------------CCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 021775 188 -------------TPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254 (307)
Q Consensus 188 -------------~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 254 (307)
.++.||++||+||.++.+|+..+|+||++|+++++|+||+|+||||+++|++++||+++|++||++|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1478999999999997766555699999999768999999999999999999999999999999999
Q ss_pred eCCCCcccc-------------CCC----CcCcccCccCCCCCcccccccccCcEEEECHHHHHHhccC
Q 021775 255 EPAESNILN-------------GGK----PGPHLITGNGVGFKPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 255 e~~~~~~~~-------------~~~----~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
||+++..+. .|. +.+++++||+.+.+|+.+..+.+|+++.|+|+|+++++|.
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~ 352 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRY 352 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHH
Confidence 999986332 122 2368899999998888888889999999999999999874
No 21
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-53 Score=408.33 Aligned_cols=246 Identities=24% Similarity=0.344 Sum_probs=219.3
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+.+. .++||++|+||||+++
T Consensus 8 ~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~av 83 (403)
T PRK08526 8 YQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGV 83 (403)
T ss_pred HHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHH
Confidence 345567889999999999999999899999999999999999999999999998876543 3469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||++++..|++.++.|||+|+++++ +++++.+.+++++++. +++|++||+||.++. ||+|+|
T Consensus 84 A~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i~-G~gtia 159 (403)
T PRK08526 84 AISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVMA-GQGTIA 159 (403)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHHh-hhHHHH
Confidence 999999999999999999999999999999999999986 5999999999999886 899999999999885 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC-----CcCcccCccCCCCC-c
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGK-----PGPHLITGNGVGFK-P 281 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~-----~~~~~~~gi~~~~~-p 281 (307)
+||++|++ .||+||+|+|+||+++|++.+||+++|++|||||||++++++. .++ ...++++|+++... |
T Consensus 160 ~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~ 238 (403)
T PRK08526 160 LEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASP 238 (403)
T ss_pred HHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCH
Confidence 99999994 7999999999999999999999999999999999999998763 233 24678899887532 2
Q ss_pred --ccccccccCcEEEECHHHHHHhccC
Q 021775 282 --DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 --~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+.++++|+++.|+|+|+.+|+++
T Consensus 239 ~~~~~~~~~vd~~v~V~d~ei~~A~~~ 265 (403)
T PRK08526 239 INLAIILECVDDFVQVDDEEIANAILF 265 (403)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 2334578999999999999999874
No 22
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-53 Score=407.48 Aligned_cols=245 Identities=27% Similarity=0.407 Sum_probs=220.5
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
.....++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+.+. .++||++|+||||+|+
T Consensus 13 ~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~ 88 (406)
T PRK06382 13 LYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGV 88 (406)
T ss_pred HHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHH
Confidence 456678999999999999999999999999999999999999999999999998876553 2359999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||++++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||+||++++ ||+|+|
T Consensus 89 A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t~~ 164 (406)
T PRK06382 89 AYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGTIG 164 (406)
T ss_pred HHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHHHH
Confidence 999999999999999999999999999999999999986 4899999999999986 899999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc----cCCCC-----cCcccCccCCCC---
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNIL----NGGKP-----GPHLITGNGVGF--- 279 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~gi~~~~--- 279 (307)
+||++|++ .||+||+|+|+||+++|+++++|+++|++|||||||++++++ ..+++ .+++++|++++.
T Consensus 165 ~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~ 243 (406)
T PRK06382 165 LEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGD 243 (406)
T ss_pred HHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccH
Confidence 99999994 799999999999999999999999999999999999999875 23332 467889998864
Q ss_pred CcccccccccCcEEEECHHHHHHhcc
Q 021775 280 KPDILDMDVMEKVLEVSSIANAQTIT 305 (307)
Q Consensus 280 ~p~~~~~~~~d~~v~Vsd~e~~~a~~ 305 (307)
.++.+.++++|+++.|+|+|+++|++
T Consensus 244 ~~~~~~~~~~d~~v~V~d~ei~~a~~ 269 (406)
T PRK06382 244 LTFDIAKNYVDDIVTVTEESVSKAIY 269 (406)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 23445678999999999999999986
No 23
>PLN02970 serine racemase
Probab=100.00 E-value=3.5e-53 Score=395.72 Aligned_cols=246 Identities=18% Similarity=0.304 Sum_probs=217.0
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
......+...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+
T Consensus 15 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~al 90 (328)
T PLN02970 15 REARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAAL 90 (328)
T ss_pred HHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHH
Confidence 345567888999999999999998889999999999999999999999999999875543 3469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++. +++|++||+||.+++ ||+|+|
T Consensus 91 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~-g~~t~g 166 (328)
T PLN02970 91 ALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVIS-GQGTIA 166 (328)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhh-ehHHHH
Confidence 999999999999999999999999999999999999996 4888888999998874 899999999999997 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC-----CcCcccCccCCCC--C
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGK-----PGPHLITGNGVGF--K 280 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~-----~~~~~~~gi~~~~--~ 280 (307)
+||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||++++++. .++ ..+++++|++.+. .
T Consensus 167 ~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~ 245 (328)
T PLN02970 167 LEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDL 245 (328)
T ss_pred HHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHH
Confidence 99999995 6999999999999999999999999999999999999998653 232 2356778877642 1
Q ss_pred cccccccccCcEEEECHHHHHHhccC
Q 021775 281 PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++...++.+|+++.|+|+|++++++.
T Consensus 246 ~~~~~~~~~d~~v~V~d~e~~~a~~~ 271 (328)
T PLN02970 246 TWPVVRDLVDDVITVDDKEIIEAMKL 271 (328)
T ss_pred HHHHHHhhCCEEEEECHHHHHHHHHH
Confidence 23345678999999999999999874
No 24
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=5.8e-53 Score=412.11 Aligned_cols=242 Identities=26% Similarity=0.364 Sum_probs=217.3
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999987663322 235999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~ 216 (307)
++|++|+||||+++|..|+..++.|||+|+.+++ +++++.+.+.+++++. |++|++||+||++++ ||+|+|+||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 5999999999999986 899999999999996 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCC---Ccccc
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGF---KPDIL 284 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~p~~~ 284 (307)
|+++.||+||+|+|+||+++|++.++|+++|++|||||||++++++. .+++ ..++++|+++.. .++.+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998764 2332 357888988654 23455
Q ss_pred cccccCcEEEECHHHHHHhccC
Q 021775 285 DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 285 ~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++++|+++.|+|+|+.+|+++
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~ 283 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKD 283 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHH
Confidence 6789999999999999999864
No 25
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.9e-53 Score=400.62 Aligned_cols=251 Identities=24% Similarity=0.293 Sum_probs=216.8
Q ss_pred CCCCCccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCC
Q 021775 46 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSG 125 (307)
Q Consensus 46 ~~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsG 125 (307)
++|||+....+++++++|+|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++| .++||++|+|
T Consensus 10 ~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV~aSsG 84 (351)
T PRK06352 10 KEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG-----AEAVICASTG 84 (351)
T ss_pred HHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCC-----CCEEEEECCc
Confidence 37899987766799999999999999999888899999999999999999999999999999988 3579999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHH
Q 021775 126 NMGISMAFMAAMKGYKMVLTMPSY-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTR 204 (307)
Q Consensus 126 N~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~ 204 (307)
|||+|+|++|+.+|++|+||||++ .+..|+.+++.|||+|+.++++ ++++.+.+++++++. ++++++ +.||++++
T Consensus 85 N~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~ 160 (351)
T PRK06352 85 NTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SVNPYRLE 160 (351)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CCCcccee
Confidence 999999999999999999999997 5899999999999999999864 889999999998875 677666 46999997
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCCC---cCcccCccC
Q 021775 205 VHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPN-----VKIYGVEPAESNILNGGKP---GPHLITGNG 276 (307)
Q Consensus 205 ~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~-----~~vigVe~~~~~~~~~~~~---~~~~~~gi~ 276 (307)
||+|+++||++|++..||+||+|+|+||+++|++++||+++|+ +|||+|||++++++..+++ ..+++++++
T Consensus 161 -G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~ 239 (351)
T PRK06352 161 -GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIR 239 (351)
T ss_pred -eHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEE
Confidence 9999999999999767999999999999999999999999877 8999999999987765544 235556665
Q ss_pred CCCC-cccccccccC----cEEEECHHHHHHhccC
Q 021775 277 VGFK-PDILDMDVME----KVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~~~-p~~~~~~~~d----~~v~Vsd~e~~~a~~l 306 (307)
++.. .+......+| .++.|+|+|+++++++
T Consensus 240 ~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~ 274 (351)
T PRK06352 240 IGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKK 274 (351)
T ss_pred eCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 5431 1222223333 4899999999999874
No 26
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=5.9e-53 Score=393.44 Aligned_cols=246 Identities=23% Similarity=0.353 Sum_probs=217.6
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++|. .++||++|+||||+|+
T Consensus 7 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~al 82 (322)
T PRK07476 7 YRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRAL 82 (322)
T ss_pred HHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHH
Confidence 455678999999999999999999899999999999999999999999999999998885 2349999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+.+++.|+.+++.|||+|+.++++ ++++.+.+.+++++. +++|++||+||.+++ ||+|++
T Consensus 83 A~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t~~ 158 (322)
T PRK07476 83 AYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGTIG 158 (322)
T ss_pred HHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhHHH
Confidence 9999999999999999999999999999999999999864 788999999998886 789999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCC---
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGF--- 279 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~--- 279 (307)
+||++|++ ++|+||+|+|+||+++|++++||+++|++|||||||++++++. .+.+ ..+++++++.+.
T Consensus 159 ~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~ 237 (322)
T PRK07476 159 LEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLD 237 (322)
T ss_pred HHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCC
Confidence 99999995 6999999999999999999999999999999999999987543 2322 356677664321
Q ss_pred --CcccccccccCcEEEECHHHHHHhccC
Q 021775 280 --KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 --~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++.+.+..+|+++.|+|+|+++++++
T Consensus 238 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~ 266 (322)
T PRK07476 238 NRYTFAMCRALLDDVVLLDEAEIAAGIRH 266 (322)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHH
Confidence 234455678999999999999999874
No 27
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.2e-52 Score=390.37 Aligned_cols=246 Identities=23% Similarity=0.346 Sum_probs=216.4
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||+|+
T Consensus 7 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 82 (317)
T TIGR02991 7 ERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRAL 82 (317)
T ss_pred HHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHH
Confidence 345678899999999999999998889999999999999999999999999998764321 3459999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+.+++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+||++++ ||+|++
T Consensus 83 A~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t~a 158 (317)
T TIGR02991 83 AYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIVA-GQGTLG 158 (317)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-hHHHHH
Confidence 999999999999999999999999999999999999997 4888989999998886 899999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccC--CC--
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNG--VG-- 278 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~--~~-- 278 (307)
+||++|++ .+|+||+|+|+||+++|++++||+++|++|||||||++++++. .+++ .++++++++ .+
T Consensus 159 ~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~ 237 (317)
T TIGR02991 159 LEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLD 237 (317)
T ss_pred HHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCC
Confidence 99999994 6899999999999999999999999999999999999887654 2322 456777663 22
Q ss_pred -CCcccccccccCcEEEECHHHHHHhccC
Q 021775 279 -FKPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 279 -~~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..++.+.++++|+++.|+|+|++++++.
T Consensus 238 ~~~~~~~~~~~vd~~v~V~d~e~~~a~~~ 266 (317)
T TIGR02991 238 NRVTFAMCKALLDEIVLVSEAEIAAGIRH 266 (317)
T ss_pred CHHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 2345567788999999999999999863
No 28
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=8.4e-53 Score=403.84 Aligned_cols=245 Identities=29% Similarity=0.419 Sum_probs=219.3
Q ss_pred chhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 021775 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMA 132 (307)
Q Consensus 53 ~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA 132 (307)
..+.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+++|
T Consensus 11 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 86 (404)
T PRK08198 11 EARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVA 86 (404)
T ss_pred HHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHH
Confidence 45677889999999999999999899999999999999999999999999999875543 45699999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHH
Q 021775 133 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGP 212 (307)
Q Consensus 133 ~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~ 212 (307)
++|+++|++|+||||++++..|+++++.|||+|+.++. +++++++.+++++++. +++|++||+||.+++ ||+|+|+
T Consensus 87 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~t~a~ 162 (404)
T PRK08198 87 YAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVIA-GQGTIGL 162 (404)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHHH-HHHHHHH
Confidence 99999999999999999999999999999999999975 5899999999999886 899999999999986 9999999
Q ss_pred HHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCC---C
Q 021775 213 EIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGF---K 280 (307)
Q Consensus 213 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~ 280 (307)
||++|++ ++|+||+|+||||+++|++++||+++|++|||||||++++++. .|++ ..++++|++++. .
T Consensus 163 EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 163 EILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred HHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHH
Confidence 9999994 7999999999999999999999999999999999999998763 2333 356778887543 2
Q ss_pred cccccccccCcEEEECHHHHHHhccC
Q 021775 281 PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++.+.++++|+++.|+|+|+++|+++
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~ 267 (404)
T PRK08198 242 TFEIIRELVDDVVTVSDEEIARAILL 267 (404)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 34456789999999999999999864
No 29
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-54 Score=385.88 Aligned_cols=251 Identities=57% Similarity=0.954 Sum_probs=237.7
Q ss_pred hHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 021775 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFM 134 (307)
Q Consensus 55 ~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 134 (307)
...+...+|+|||+.++++...+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||+++|++++|||+|.+||++
T Consensus 43 ~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~ 122 (362)
T KOG1252|consen 43 LWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYM 122 (362)
T ss_pred hhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHH
Confidence 34688999999999999998778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHH---HHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 135 AAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG---TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 135 a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|+..|++|+++||++.+.+|+..+++|||+|+.++....+.. +...+.++..+.++.|.++||.||.|+.+||.|+|
T Consensus 123 ~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg 202 (362)
T KOG1252|consen 123 AALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTG 202 (362)
T ss_pred HHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccccc
Confidence 999999999999999999999999999999999997655555 89999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcC--cccCccCCCCCccccccccc
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGP--HLITGNGVGFKPDILDMDVM 289 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~--~~~~gi~~~~~p~~~~~~~~ 289 (307)
+||++|+.+++|.||.++|||||++|+++++|+.+|+++|++|||.++..+..+.+++ +.++|||.+++|..++...+
T Consensus 203 ~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~v 282 (362)
T KOG1252|consen 203 PEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLV 282 (362)
T ss_pred HHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHH
Confidence 9999999888999999999999999999999999999999999999998777777766 89999999999999999999
Q ss_pred CcEEEECHHHHHHhcc
Q 021775 290 EKVLEVSSIANAQTIT 305 (307)
Q Consensus 290 d~~v~Vsd~e~~~a~~ 305 (307)
|+++.++++|++.+.|
T Consensus 283 d~~~~~~~d~A~~~Ar 298 (362)
T KOG1252|consen 283 DEVLKVSSDEAIEMAR 298 (362)
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999988765
No 30
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.7e-52 Score=391.21 Aligned_cols=245 Identities=26% Similarity=0.375 Sum_probs=215.5
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+... .++|+++|+||||+|+
T Consensus 15 ~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~al 90 (333)
T PRK08638 15 IEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGV 90 (333)
T ss_pred HHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHH
Confidence 456678999999999999999998888999999999999999999999999998765322 3469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++. +++|++||+||.+++ ||+|+|
T Consensus 91 A~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~~t~a 166 (333)
T PRK08638 91 ALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQGTIG 166 (333)
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-cccHHH
Confidence 999999999999999999999999999999999999975 4889999999999986 889999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCCcc
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFKPD 282 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~p~ 282 (307)
+||++|+ +++|+||+|+|+||+++|++++||+++|++|||||||++++++. .+.+ ..++.+|++... |.
T Consensus 167 ~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~-p~ 244 (333)
T PRK08638 167 LEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSR-PG 244 (333)
T ss_pred HHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCC-cc
Confidence 9999999 57999999999999999999999999999999999999997543 3433 234566765543 33
Q ss_pred ccc----ccccCcEEEECHHHHHHhccC
Q 021775 283 ILD----MDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 283 ~~~----~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+. ++++|+++.|+|+|++++++.
T Consensus 245 ~~~~~~~~~~~d~~v~Vsd~ea~~a~~~ 272 (333)
T PRK08638 245 NLTYEIVRELVDDIVLVSEDEIRNAMKD 272 (333)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 333 578999999999999999873
No 31
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=9.1e-53 Score=400.61 Aligned_cols=280 Identities=13% Similarity=0.027 Sum_probs=229.0
Q ss_pred HHHhhccc---------C-CCCCceeeecccccCCCCCCchhHhhhcCCCC---CCCCccchhHhhhcccCCCccccccc
Q 021775 6 RSFLKKRA---------L-TCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP---KDLPATNIKRDVSQLIGRTPLVFLNK 72 (307)
Q Consensus 6 ~~~~~~~~---------c-~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~~~~v~~~~g~TPl~~~~~ 72 (307)
++|.+||. | +|+++|++.||++... . . ..+++| +|||+.+. +..+|.|||+++++
T Consensus 3 l~C~~Cg~~~~~~~~~~C~~c~g~l~~~y~~~~~~--~-----~-~~~~~wry~~~lP~~~~----~~~~g~tpl~~~~~ 70 (398)
T TIGR03844 3 LRCPGCGEVLPDHYTLSCPLDCGLLRAEYAERQLT--L-----R-DLPGIFRYYDWLPVTGH----LRTRGGPVTYKSEG 70 (398)
T ss_pred EEeCCCCCccCCccccCCCCCCCceEEeecccccc--c-----c-cCCchhhhHhhCCCCCC----CCCCCCCceeehHH
Confidence 46888884 9 8999999999976321 1 1 135788 56777543 56788899999999
Q ss_pred ccccCCC-eEEEEeCC-------CCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 021775 73 VSEGCGA-YIAVKQEM-------FQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVL 144 (307)
Q Consensus 73 l~~~~g~-~l~~K~E~-------~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 144 (307)
|++.+|. +||+|+|+ +|||||||||++.++|+++.+.| .+.|+++|+||||+|+|++|+++|++|+|
T Consensus 71 L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g-----~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I 145 (398)
T TIGR03844 71 LARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG-----GKTLVVASAGNTGRAFAEVSAITGQPVIL 145 (398)
T ss_pred HHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC-----CCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 9999999 99995555 89999999999999999999988 45699999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCE
Q 021775 145 TMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224 (307)
Q Consensus 145 vvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~ 224 (307)
|||++++..+...++.+||+|+.+++ +|+++.+.+++++++. ++|..++++||+.++ |++|+++||+||+++.||+
T Consensus 146 ~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~ie-G~~Ti~~Ei~eql~~~PD~ 221 (398)
T TIGR03844 146 VVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARRD-GMGTVMLDAAVTIGSLPDH 221 (398)
T ss_pred EECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHHh-hHHHHHHHHHHHcCCCCCE
Confidence 99997654444435789999999987 4999999999999886 776567778999997 9999999999999644999
Q ss_pred EEEecCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCcccc----CCCCc---------------CcccCccCCC
Q 021775 225 FVMGIGSGGTVSGVGQYLKSQN-------PNVKIYGVEPAESNILN----GGKPG---------------PHLITGNGVG 278 (307)
Q Consensus 225 vv~pvG~Gg~~~Gi~~~~k~~~-------~~~~vigVe~~~~~~~~----~~~~~---------------~~~~~gi~~~ 278 (307)
||+|+|+|+++.|++++++++. ..||+++||+++++++. .+... .+++++|.++
T Consensus 222 VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~ 301 (398)
T TIGR03844 222 YFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNR 301 (398)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeC
Confidence 9999999999999999998852 34799999999998764 23211 4567888655
Q ss_pred CCcc-------cccccccCcEEEECHHHHHHhccC
Q 021775 279 FKPD-------ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 279 ~~p~-------~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..+. ...++..++++.|||+||.+|+++
T Consensus 302 ~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~ 336 (398)
T TIGR03844 302 TPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKL 336 (398)
T ss_pred CCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 3332 224678899999999999999874
No 32
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=4.1e-52 Score=395.24 Aligned_cols=243 Identities=18% Similarity=0.260 Sum_probs=212.0
Q ss_pred ccCCCcccccccccccCC--------CeEEEEeCCCCC-CCcchhHHHHHHHHH-----HHHcCCCCCCC----------
Q 021775 61 LIGRTPLVFLNKVSEGCG--------AYIAVKQEMFQP-TASIKDRPAVAMLED-----AENKNLISPGK---------- 116 (307)
Q Consensus 61 ~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~np-tGS~KdR~a~~~l~~-----a~~~g~~~~g~---------- 116 (307)
++++|||+++++|++.+| .+||+|+|++|| |||||||++.++|.. +++.|.++||.
T Consensus 49 ~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~ 128 (404)
T cd06447 49 GIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKF 128 (404)
T ss_pred CccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhh
Confidence 399999999999988765 699999999999 999999999999864 78899988875
Q ss_pred ------cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCC
Q 021775 117 ------TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPN 190 (307)
Q Consensus 117 ------~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~ 190 (307)
++||++||||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+++++++.++
T Consensus 129 ~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~ 206 (404)
T cd06447 129 RKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPM 206 (404)
T ss_pred hhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999999999999999999999999999999986 589999999999988767
Q ss_pred cEEcCCCCChhHHHHHHHHHHHHHHHhhCC---C-----CCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 021775 191 AFMLQQFSNPANTRVHFETTGPEIWEDTMG---Q-----VDIFVMGIGSGGTVSGVGQYLKSQ-NPNVKIYGVEPAESNI 261 (307)
Q Consensus 191 ~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~---~-----~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVe~~~~~~ 261 (307)
+||++++++|..+ +||+|+|+||++|+++ . ||+||+|+|+||+++|++++||++ +|+++||+|||++++.
T Consensus 207 ~~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~ 285 (404)
T cd06447 207 CYFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPC 285 (404)
T ss_pred eEeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChH
Confidence 8899997777666 5999999999999952 3 558999999999999999999997 7899999999999875
Q ss_pred cc----CCC-----------CcCcccCccCCCCC---cccccccccCcEEEECHHHHHHhccC
Q 021775 262 LN----GGK-----------PGPHLITGNGVGFK---PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 262 ~~----~~~-----------~~~~~~~gi~~~~~---p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+. .+. ...++++||+++.. ++.+.++.+|+++.|+|+|+.++++.
T Consensus 286 ~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~ 348 (404)
T cd06447 286 MLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAM 348 (404)
T ss_pred HHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 42 221 13578899988753 23344688999999999999999874
No 33
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.3e-52 Score=409.32 Aligned_cols=242 Identities=25% Similarity=0.349 Sum_probs=216.3
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.++|.++.+.. . .++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~---~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-L---DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-C---CCCEEEECCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999875432 2 334999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~ 216 (307)
++|++|+||||++++..|++.++.|||+|++++. +++++.+.+.+++++. |++|++||+||.++. ||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 4899999999999886 789999999999996 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC---cccc
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK---PDIL 284 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~---p~~~ 284 (307)
|+++.+|+||+|+|+||+++|++.++|+++|++|||||||++++++. .|++ ..++++|+++... ++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998764 3433 3578889887542 3345
Q ss_pred cccccCcEEEECHHHHHHhccC
Q 021775 285 DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 285 ~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++++|++|.|+|+|+.+|+++
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~ 355 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKD 355 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHH
Confidence 6789999999999999999874
No 34
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.3e-52 Score=400.36 Aligned_cols=246 Identities=26% Similarity=0.378 Sum_probs=215.7
Q ss_pred chhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 021775 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMA 132 (307)
Q Consensus 53 ~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA 132 (307)
....++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... .++||++|+||||+++|
T Consensus 5 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A 80 (409)
T TIGR02079 5 AARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFA 80 (409)
T ss_pred HHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHH
Confidence 45567899999999999999999899999999999999999999999999987533221 34599999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE---EEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHH
Q 021775 133 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL---ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFET 209 (307)
Q Consensus 133 ~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V---~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t 209 (307)
++|+++|++|+||||++++..|+..++.|||+| +.++. +++++++.+.+++++. +++|++||+||.+++ ||+|
T Consensus 81 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~t 156 (409)
T TIGR02079 81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQGT 156 (409)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hhHH
Confidence 999999999999999999999999999999974 34443 5899999999999886 889999999999996 9999
Q ss_pred HHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC
Q 021775 210 TGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK 280 (307)
Q Consensus 210 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~ 280 (307)
+|+||++|+++.||+||+|+|+||+++|++++||+++|++|||||||++++++. .|++ .+++++|+++..+
T Consensus 157 i~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~ 236 (409)
T TIGR02079 157 VAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRV 236 (409)
T ss_pred HHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCC
Confidence 999999999656999999999999999999999999999999999999998764 2432 3578899988654
Q ss_pred cc---cccccccCcEEEECHHHHHHhccC
Q 021775 281 PD---ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 p~---~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+. .+.+.++|+++.|+|+|+.+|+++
T Consensus 237 g~~~~~~~~~~vd~vv~V~d~e~~~a~~~ 265 (409)
T TIGR02079 237 GDLNFKALKDVPDEVTLVPEGAVCTTILD 265 (409)
T ss_pred cHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 32 234678999999999999999864
No 35
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-52 Score=388.26 Aligned_cols=246 Identities=22% Similarity=0.307 Sum_probs=216.2
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++... +.|+++|+||||+|+
T Consensus 9 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~al 85 (322)
T PRK06110 9 EAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSV 85 (322)
T ss_pred HHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHH
Confidence 34556789999999999999999989999999999999999999999999999998876433 359999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+.+++++. ++||+++| ||.+++ ||+|++
T Consensus 86 A~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~-G~~t~~ 160 (322)
T PRK06110 86 AFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLVR-GVATYA 160 (322)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHHh-ccchHH
Confidence 999999999999999999999999999999999999975 5889999999998886 79999998 678886 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC-c
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK-P 281 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~-p 281 (307)
+||++|++ .+|+||+|+|+||+++|++++||+.+|++|||+|||++++++. .++. ..++++|++.... |
T Consensus 161 ~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 239 (322)
T PRK06110 161 LELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDP 239 (322)
T ss_pred HHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccH
Confidence 99999995 7999999999999999999999999999999999999998753 3332 3567778765432 2
Q ss_pred cc--ccccccCcEEEECHHHHHHhccC
Q 021775 282 DI--LDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 ~~--~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.. +.++++|+++.|||+|+++++++
T Consensus 240 ~~~~~~~~~~d~~~~Vsd~e~~~a~~~ 266 (322)
T PRK06110 240 EALEVIRAGADRIVRVTDDEVAAAMRA 266 (322)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 22 34688999999999999999874
No 36
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-52 Score=400.73 Aligned_cols=246 Identities=26% Similarity=0.345 Sum_probs=219.9
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
.....++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... .++|+++|+||||+|+
T Consensus 11 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 86 (403)
T PRK07334 11 RAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGV 86 (403)
T ss_pred HHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHH
Confidence 456678899999999999999998889999999999999999999999999998754332 2359999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||.++++.|+.+++.|||+|+.+++ +++++++.+++++++. +++|++||+||.+++ ||+|+|
T Consensus 87 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~-g~~t~~ 162 (403)
T PRK07334 87 AYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVIA-GQGTVA 162 (403)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHHH-hHHHHH
Confidence 999999999999999999999999999999999999975 4889999999999885 899999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---CC----CcCcccCccCCC---CCc
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNG---GK----PGPHLITGNGVG---FKP 281 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~---~~----~~~~~~~gi~~~---~~p 281 (307)
+||++|+ +.||+||+|+|+||+++|++++||+++|++||+||||++++++.. +. ..+++++||+++ ..|
T Consensus 163 ~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 241 (403)
T PRK07334 163 LEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLT 241 (403)
T ss_pred HHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHH
Confidence 9999999 479999999999999999999999999999999999999987642 21 145788999864 346
Q ss_pred ccccccccCcEEEECHHHHHHhccC
Q 021775 282 DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 ~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+.++++|+++.|+|+|++++++.
T Consensus 242 ~~~~~~~~d~~v~V~d~e~~~a~~~ 266 (403)
T PRK07334 242 LEIVRRLVDDILLVSEADIEQAVSL 266 (403)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHH
Confidence 6677889999999999999999874
No 37
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=6.8e-52 Score=385.07 Aligned_cols=239 Identities=22% Similarity=0.280 Sum_probs=210.8
Q ss_pred CCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEE
Q 021775 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMV 143 (307)
Q Consensus 64 ~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ 143 (307)
+|||++++++++.+|.+||+|+|++|||||||||++.+++.+++++|. .+ .++|+++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999885 23 3469999999999999999999999999
Q ss_pred EEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC--C
Q 021775 144 LTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG--Q 221 (307)
Q Consensus 144 ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~--~ 221 (307)
||||+.+++.|++.++.|||+|+.+++. .++++.+.+++++++.+++||++||+||.+++ ||+|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999864 26677777888887755799999999999997 999999999999976 5
Q ss_pred CCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CCC-----cCcccCccCCCCCcc---cccccc
Q 021775 222 VDIFVMGIGSGGTVSGVGQYLKSQN-PNVKIYGVEPAESNILNG----GKP-----GPHLITGNGVGFKPD---ILDMDV 288 (307)
Q Consensus 222 ~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVe~~~~~~~~~----~~~-----~~~~~~gi~~~~~p~---~~~~~~ 288 (307)
||+||+|+|+||+++|++++||+++ |+++||||||++++++.. +.+ ..++++||+.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 999999999999987642 322 357888998876543 233567
Q ss_pred cCcEEEECHHHHHHhccC
Q 021775 289 MEKVLEVSSIANAQTITL 306 (307)
Q Consensus 289 ~d~~v~Vsd~e~~~a~~l 306 (307)
.|+++.|+|+|+++++++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~ 254 (316)
T cd06448 237 NIKSEVVSDRDAVQACLR 254 (316)
T ss_pred CCeEEEECHHHHHHHHHH
Confidence 899999999999999864
No 38
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.6e-51 Score=400.68 Aligned_cols=248 Identities=40% Similarity=0.694 Sum_probs=219.1
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
.+...+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.+.+|. +|+++|+||||+|+|++|+
T Consensus 4 ~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~~ssGN~g~alA~~a~ 82 (454)
T TIGR01137 4 NIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD-TIIEPTSGNTGIGLALVAA 82 (454)
T ss_pred chHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHHH
Confidence 456678999999999999988889999999999999999999999999999999888874 5999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChH---HHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG---GTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPE 213 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~E 213 (307)
++|++|+||||+++++.|+.+++.|||+|+.+++...++ ...+.+.+++++.++.+|++||+||.++.+||+|+|+|
T Consensus 83 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~E 162 (454)
T TIGR01137 83 IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162 (454)
T ss_pred HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHH
Confidence 999999999999999999999999999999998642233 33567778877755778899999999987799999999
Q ss_pred HHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC------CcCcccCccCCCCCccccccc
Q 021775 214 IWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGK------PGPHLITGNGVGFKPDILDMD 287 (307)
Q Consensus 214 i~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~------~~~~~~~gi~~~~~p~~~~~~ 287 (307)
|++|+++.||+||+|+||||+++|++++||+.+|.+||+||||++++ +..+. ...+.++|++.+..|+.+..+
T Consensus 163 i~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (454)
T TIGR01137 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQPENLNKTGRTPYKVEGIGYDFIPTVLDRK 241 (454)
T ss_pred HHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccCCCcccCCCCCCccCCCCCCCCCCCcCCch
Confidence 99999767999999999999999999999999999999999999986 33321 124678899887667777888
Q ss_pred ccCcEEEECHHHHHHhccC
Q 021775 288 VMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 288 ~~d~~v~Vsd~e~~~a~~l 306 (307)
++|+++.|+|+|++++++.
T Consensus 242 ~~d~~~~V~~~e~~~a~~~ 260 (454)
T TIGR01137 242 VVDEWIKTDDKESFKMARR 260 (454)
T ss_pred hCCeEEEECHHHHHHHHHH
Confidence 8999999999999999874
No 39
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.8e-52 Score=399.73 Aligned_cols=249 Identities=28% Similarity=0.381 Sum_probs=216.1
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++..|.+||+|+|++|||||||||+|.+++.++.+... .++|+++|+||||+++
T Consensus 13 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~al 88 (420)
T PRK08639 13 DKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGV 88 (420)
T ss_pred HHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHH
Confidence 345678899999999999999998889999999999999999999999999988532211 3469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC-CCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD-PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETT 210 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~ 210 (307)
|++|+++|++|+||||++++..|+..++.|||+|+.+. ...+++++.+.+.+++++. |++|++||+||.+++ ||+|+
T Consensus 89 A~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~-G~~ti 166 (420)
T PRK08639 89 AYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVIA-GQGTV 166 (420)
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-chhHH
Confidence 99999999999999999999999999999999754321 1235899999999999886 899999999999996 99999
Q ss_pred HHHHHHhhCCC--CCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCC
Q 021775 211 GPEIWEDTMGQ--VDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGF 279 (307)
Q Consensus 211 ~~Ei~~q~~~~--~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~ 279 (307)
|+||++|+++. ||+||+|+|+||+++|+++++|+++|++|||||||++++++. .+.+ ..++++|+++..
T Consensus 167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~ 246 (420)
T PRK08639 167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVAR 246 (420)
T ss_pred HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCC
Confidence 99999999755 999999999999999999999999999999999999998764 2332 467889998765
Q ss_pred C---cccccccccCcEEEECHHHHHHhccC
Q 021775 280 K---PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 ~---p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+ ++.+.++++|+++.|+|+|+.+|+++
T Consensus 247 ~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~ 276 (420)
T PRK08639 247 VGDLTFEILKDVVDDVVLVPEGAVCTTILE 276 (420)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 3 23345788999999999999999874
No 40
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=9.4e-52 Score=397.09 Aligned_cols=247 Identities=20% Similarity=0.278 Sum_probs=214.8
Q ss_pred hhhcccCCCcccccccccccCC--------CeEEEEeCCCCC-CCcchhHHHHHHHHH-----HHHcCCCCCCC------
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCG--------AYIAVKQEMFQP-TASIKDRPAVAMLED-----AENKNLISPGK------ 116 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~np-tGS~KdR~a~~~l~~-----a~~~g~~~~g~------ 116 (307)
.+++++++|||++++.+++.+| .+||+|+|++|| |||||||++.++|.. +++.|.+.|+.
T Consensus 68 ~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~ 147 (441)
T PRK02991 68 AATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLA 147 (441)
T ss_pred cccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhc
Confidence 3456699999999999988765 699999999999 999999999999875 56788777664
Q ss_pred ----------cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHH
Q 021775 117 ----------TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE 186 (307)
Q Consensus 117 ----------~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~ 186 (307)
++||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.++++++
T Consensus 148 ~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~ 225 (441)
T PRK02991 148 SPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAE 225 (441)
T ss_pred chhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999997 48999999999998
Q ss_pred hCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCC
Q 021775 187 STPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG--------QVDIFVMGIGSGGTVSGVGQYLKSQ-NPNVKIYGVEPA 257 (307)
Q Consensus 187 ~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~--------~~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVe~~ 257 (307)
+.+++||+++++||..++ ||+|+|+||++|+++ .||+||+|+|+||+++|++++||++ +|++|||+|||+
T Consensus 226 ~~~~~~~~~~~~~~~~ia-G~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ 304 (441)
T PRK02991 226 SDPNCYFIDDENSRTLFL-GYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPT 304 (441)
T ss_pred hcCCeEeCCCCCchhHHH-hHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 865789999998888875 999999999999963 2679999999999999999999997 688999999999
Q ss_pred CCcccc----CCCC-----------cCcccCccCCCCCc---ccccccccCcEEEECHHHHHHhccC
Q 021775 258 ESNILN----GGKP-----------GPHLITGNGVGFKP---DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 258 ~~~~~~----~~~~-----------~~~~~~gi~~~~~p---~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+++++. .|+. ..++++||+++..+ +.+.++++|+++.|+|+|+.++++.
T Consensus 305 ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~ 371 (441)
T PRK02991 305 HSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGL 371 (441)
T ss_pred CChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 987642 2321 34788999887532 3445688999999999999999873
No 41
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5.5e-52 Score=395.30 Aligned_cols=233 Identities=27% Similarity=0.366 Sum_probs=210.9
Q ss_pred CcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 021775 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVL 144 (307)
Q Consensus 65 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 144 (307)
|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999999999999999999999999999999999988875 24699999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCE
Q 021775 145 TMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224 (307)
Q Consensus 145 vvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~ 224 (307)
|||++++..|+++++.|||+|++++. +++++.+.+++++++. +++|++||+||++++ ||+|+|+||++|++ .||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999975 4899999999999886 899999999999985 99999999999994 7999
Q ss_pred EEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC---cccccccccCcE
Q 021775 225 FVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK---PDILDMDVMEKV 292 (307)
Q Consensus 225 vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~---p~~~~~~~~d~~ 292 (307)
||+|+|+||+++|++.+||+++|++|||||||++++++. .+++ ..++++|++++.. ++.+.++++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998764 3432 4577888886432 334567889999
Q ss_pred EEECHHHHHHhccC
Q 021775 293 LEVSSIANAQTITL 306 (307)
Q Consensus 293 v~Vsd~e~~~a~~l 306 (307)
+.|+|+|+.+|+++
T Consensus 232 v~V~d~e~~~a~~~ 245 (380)
T TIGR01127 232 VTVDEEEIANAIYL 245 (380)
T ss_pred EEECHHHHHHHHHH
Confidence 99999999999874
No 42
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-51 Score=386.08 Aligned_cols=237 Identities=22% Similarity=0.289 Sum_probs=210.8
Q ss_pred ccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHH
Q 021775 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGIS 130 (307)
Q Consensus 51 ~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 130 (307)
+...+.+++..+++|||++++.+ +||+|+|++|||||||||++.+++.++.+.|. .+.||++|+||||+|
T Consensus 26 i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~a 95 (349)
T PRK08813 26 VLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQG 95 (349)
T ss_pred HHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHH
Confidence 45666789999999999998765 49999999999999999999999999999885 235999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHH
Q 021775 131 MAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETT 210 (307)
Q Consensus 131 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~ 210 (307)
+|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +|+++.+.+++++++. +++|+++|+||++++ ||+|+
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~Ti 171 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGTV 171 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHHH
Confidence 9999999999999999999999999999999999999976 5999999999999986 899999999999997 99999
Q ss_pred HHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---CC-----CcCcccCccCCCC---
Q 021775 211 GPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNG---GK-----PGPHLITGNGVGF--- 279 (307)
Q Consensus 211 ~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~---~~-----~~~~~~~gi~~~~--- 279 (307)
|+||++|. ||+||+|+|+||+++|++++||+ +.+|||||||++++++.. +. ...++++|+++..
T Consensus 172 g~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~ 246 (349)
T PRK08813 172 GIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGF 246 (349)
T ss_pred HHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcch
Confidence 99999873 79999999999999999999996 568999999999986431 22 2458899998643
Q ss_pred CcccccccccCcEEEECHHHHHHhccC
Q 021775 280 KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 ~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++.+.++++|+++.|||+|+.+|+++
T Consensus 247 ~~~~i~~~~vd~vv~Vsd~ei~~a~~~ 273 (349)
T PRK08813 247 LTRRLCSSLLDDVVIVREAELRETLVR 273 (349)
T ss_pred hHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 445566788999999999999999863
No 43
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.3e-51 Score=402.54 Aligned_cols=242 Identities=26% Similarity=0.364 Sum_probs=217.0
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999988643321 346999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~ 216 (307)
++|++++||||+++|..|+..++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.++. ||+|+|+||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHHHH
Confidence 9999999999999999999999999999999975 4899999999999986 899999999999996 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC---cccc
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK---PDIL 284 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~---p~~~ 284 (307)
|+++.+|+||+|+||||+++|++.++|+++|++|||||||++++++. .|++ ..++++|+++..+ ++.+
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~ 241 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRL 241 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHH
Confidence 99657999999999999999999999999999999999999998764 2332 4577899887643 3445
Q ss_pred cccccCcEEEECHHHHHHhccC
Q 021775 285 DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 285 ~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++++|+++.|+|+|+.+|+++
T Consensus 242 ~~~~vd~vv~V~d~ei~~ai~~ 263 (499)
T TIGR01124 242 CQQYLDDIVTVDTDEVCAAIKD 263 (499)
T ss_pred HHHhCCEEEEECHHHHHHHHHH
Confidence 6789999999999999999874
No 44
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.7e-51 Score=387.76 Aligned_cols=249 Identities=23% Similarity=0.306 Sum_probs=216.7
Q ss_pred CCCCccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCCh
Q 021775 47 KDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGN 126 (307)
Q Consensus 47 ~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN 126 (307)
+|||+.+..+++++.+|+|||++++++++.+|.+||+|+|++|||||||||++.+++.+++++| .++||++|+||
T Consensus 11 ~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV~aSsGN 85 (352)
T PRK06721 11 SYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG-----SEAIICASTGN 85 (352)
T ss_pred HhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEEEECCcH
Confidence 7899987777899999999999999999888899999999999999999999999999999998 35799999999
Q ss_pred HHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 127 MGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 127 ~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
||+|+|++|+++|++|+||||++. +..|+++++.|||+|+.+++ +++++.+.+++++++. ++++++ +.||.+++
T Consensus 86 ~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~- 160 (352)
T PRK06721 86 TSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRIE- 160 (352)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhhh-
Confidence 999999999999999999999874 78899999999999999986 4888999999999886 677776 56999997
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHH----HHHhcC-CCcEEEEEeCCCCccccCCCC---cCcccCccCC
Q 021775 206 HFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQ----YLKSQN-PNVKIYGVEPAESNILNGGKP---GPHLITGNGV 277 (307)
Q Consensus 206 G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~----~~k~~~-~~~~vigVe~~~~~~~~~~~~---~~~~~~gi~~ 277 (307)
||+|+++||++|++..||+||+|+|+||+++|+++ ++|+.+ |.+|||||||++++++..+.. ..+++++++.
T Consensus 161 G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~ 240 (352)
T PRK06721 161 GQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRI 240 (352)
T ss_pred hhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeecccc
Confidence 99999999999996679999999999999998554 455554 899999999999988766543 3466777776
Q ss_pred CCCcccc------cccccCcEEEECHHHHHHhccC
Q 021775 278 GFKPDIL------DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 278 ~~~p~~~------~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+. |..+ .+.++|+++.|+|+|+++++++
T Consensus 241 ~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 274 (352)
T PRK06721 241 GN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRL 274 (352)
T ss_pred CC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHH
Confidence 53 2211 2457899999999999999874
No 45
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.2e-51 Score=384.55 Aligned_cols=246 Identities=20% Similarity=0.308 Sum_probs=215.2
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+
T Consensus 12 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 87 (321)
T PRK07048 12 AAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAI 87 (321)
T ss_pred HHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHH
Confidence 455678999999999999999998888999999999999999999999999998875432 3469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+.+|++++||||+++++.|+.+++.|||+|+.+++. ++++.+.+++++++. +++|++||+||.+++ ||+|++
T Consensus 88 A~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~~-g~~t~~ 163 (321)
T PRK07048 88 ALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVIA-GQGTAA 163 (321)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchhh-ccchHH
Confidence 9999999999999999999999999999999999999964 778888899999886 899999999999986 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc----cCCCC-----cCcccCccCCCCC--
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNIL----NGGKP-----GPHLITGNGVGFK-- 280 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~gi~~~~~-- 280 (307)
+||++|++ .||+||+|+|+||+++|+++++|+++|+++||||||++++++ ..++. ..++++|+.+..+
T Consensus 164 ~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~ 242 (321)
T PRK07048 164 KELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGN 242 (321)
T ss_pred HHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccH
Confidence 99999995 799999999999999999999999999999999999998753 23332 3466777654321
Q ss_pred -cccccccccCcEEEECHHHHHHhccC
Q 021775 281 -PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 -p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+.+..+++|+++.|+|+|+++++++
T Consensus 243 ~~~~~~~~~~d~~~~V~d~e~~~a~~~ 269 (321)
T PRK07048 243 YTFPIIRRLVDDIVTVSDAELVDAMRF 269 (321)
T ss_pred HHHHHHHHhCCceEEECHHHHHHHHHH
Confidence 22334678999999999999999874
No 46
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.9e-51 Score=387.84 Aligned_cols=249 Identities=23% Similarity=0.278 Sum_probs=217.4
Q ss_pred CCCCccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCCh
Q 021775 47 KDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGN 126 (307)
Q Consensus 47 ~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN 126 (307)
++||+.+..+++++++|+|||+++++|++..|.+||+|+|++|||||||||++.+++.+++++| .++||++|+||
T Consensus 14 ~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~iv~aSsGN 88 (353)
T PRK07409 14 DRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEG-----AKAVICASTGN 88 (353)
T ss_pred HhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEEEECCcH
Confidence 6789877666799999999999999999888899999999999999999999999999999988 35799999999
Q ss_pred HHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 127 MGISMAFMAAMKGYKMVLTMPSY-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 127 ~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
||+++|++|+.+|++|+||||++ .+..|+++++.|||+|+.+++ +++++.+.+++++++. +++++++ .||.+++
T Consensus 89 ~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~- 163 (353)
T PRK07409 89 TSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRIE- 163 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhhh-
Confidence 99999999999999999999997 688999999999999999987 4889999999998886 5777776 5999997
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCCC---cCcccCccC
Q 021775 206 HFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNP------NVKIYGVEPAESNILNGGKP---GPHLITGNG 276 (307)
Q Consensus 206 G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~~~~~---~~~~~~gi~ 276 (307)
||+|+++||++|++..||+||+|+|+||+++|++++|+++.+ .+|||||||++++++..+.+ ..+++++++
T Consensus 164 g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~ 243 (353)
T PRK07409 164 GQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIR 243 (353)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeee
Confidence 999999999999965799999999999999999999998743 48999999999987765543 345677776
Q ss_pred CCCCcccc------cccccCcEEEECHHHHHHhccC
Q 021775 277 VGFKPDIL------DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~~~p~~~------~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++. |..+ .+++.++++.|+|+|+++++++
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~ 278 (353)
T PRK07409 244 IGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRL 278 (353)
T ss_pred cCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 653 3322 2345678999999999999874
No 47
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=3.5e-51 Score=383.11 Aligned_cols=246 Identities=20% Similarity=0.224 Sum_probs=214.5
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.+++++|.+. ++|+++|+||||+|+
T Consensus 11 ~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~al 87 (338)
T PRK06608 11 AAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAV 87 (338)
T ss_pred HHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHH
Confidence 45666788999999999999999999999999999999999999999999999999998542 469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+++++.|+++++.|||+|+.++. .+++.+.+++ +++ +++||++||+||.+++ ||+|++
T Consensus 88 A~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~t~a 161 (338)
T PRK06608 88 AYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAGTLC 161 (338)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHHHHH
Confidence 999999999999999999999999999999999999974 4677777777 554 4899999999999996 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------CcCcccCccCCCCCc
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGK------PGPHLITGNGVGFKP 281 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~------~~~~~~~gi~~~~~p 281 (307)
+||++|+++.||+||+|+|+||+++|+++++|+.++.++||||||++++++. .+. ...++++|++++...
T Consensus 162 ~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~ 241 (338)
T PRK06608 162 YEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVS 241 (338)
T ss_pred HHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCC
Confidence 9999999767999999999999999999999999999999999999997542 332 235778888875432
Q ss_pred c-ccc-ccccCcEEEECHHHHHHhccC
Q 021775 282 D-ILD-MDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 ~-~~~-~~~~d~~v~Vsd~e~~~a~~l 306 (307)
. .+. .+.+|+++.|+|+|++++++.
T Consensus 242 ~~~~~~~~~~d~~v~Vsd~e~~~a~~~ 268 (338)
T PRK06608 242 ARTFEYLKKLDDFYLVEEYEIYYWTAW 268 (338)
T ss_pred HHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 2 122 134799999999999999863
No 48
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-51 Score=380.27 Aligned_cols=246 Identities=25% Similarity=0.339 Sum_probs=215.2
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+.++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+... .++||++|+||||+|+
T Consensus 8 ~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~al 83 (317)
T PRK06815 8 LEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGV 83 (317)
T ss_pred HHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHH
Confidence 345667888999999999999998889999999999999999999999999987543321 3459999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|+||||+++++.|+..++.|||+|+.++++ ++++...+++++++. +++|++||+||.+++ ||+|++
T Consensus 84 A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~a 159 (317)
T PRK06815 84 ALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQGTIG 159 (317)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhhc-chhHHH
Confidence 9999999999999999999999999999999999999974 788888999998886 889999999999886 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCC-----cCcccCccCCCCCc-
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNG----GKP-----GPHLITGNGVGFKP- 281 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~----~~~-----~~~~~~gi~~~~~p- 281 (307)
+||++|++ .||+||+|+|+||+++|++++||+++|++|||||||++++++.. +++ .+++++|++.+..|
T Consensus 160 ~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~ 238 (317)
T PRK06815 160 MELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPG 238 (317)
T ss_pred HHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCccc
Confidence 99999995 69999999999999999999999999999999999999987642 332 34677887654322
Q ss_pred ---ccccccccCcEEEECHHHHHHhccC
Q 021775 282 ---DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 282 ---~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+.++++|+++.|+|+|+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 266 (317)
T PRK06815 239 AITFPLCQQLIDQKVLVSEEEIKEAMRL 266 (317)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 2345688999999999999999874
No 49
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=7.3e-51 Score=398.63 Aligned_cols=242 Identities=27% Similarity=0.365 Sum_probs=216.4
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|+
T Consensus 13 ~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa~ 88 (504)
T PRK09224 13 RVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSAA 88 (504)
T ss_pred HhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999988763321 356999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~ 216 (307)
++|++|+||||+++|..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+++ ||+|+|+||++
T Consensus 89 ~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i~-G~gTi~~EI~~ 164 (504)
T PRK09224 89 RLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVIA-GQGTIAMEILQ 164 (504)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHHH-hHHHHHHHHHH
Confidence 9999999999999999999999999999999985 5999999999999885 899999999999996 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC---cccc
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK---PDIL 284 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~---p~~~ 284 (307)
|+++.||+||+|+||||+++|++.++|+++|++|||||||++++++. .+++ ..++++|+++..+ ++.+
T Consensus 165 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~ 244 (504)
T PRK09224 165 QHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRL 244 (504)
T ss_pred hccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHH
Confidence 99655999999999999999999999999999999999999998764 2332 3467788876542 3445
Q ss_pred cccccCcEEEECHHHHHHhccC
Q 021775 285 DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 285 ~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.++++|+++.|+|+|+.+|+++
T Consensus 245 ~~~~vd~~v~Vsd~ei~~a~~~ 266 (504)
T PRK09224 245 CQEYVDDVITVDTDEICAAIKD 266 (504)
T ss_pred HHhcCCeEEEECHHHHHHHHHH
Confidence 6789999999999999999873
No 50
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.1e-50 Score=388.43 Aligned_cols=245 Identities=18% Similarity=0.265 Sum_probs=213.0
Q ss_pred hcccCCCcccccccccccC--------CCeEEEEeCCCCC-CCcchhHHHHHHHHH-----HHHcCCCCCCC--------
Q 021775 59 SQLIGRTPLVFLNKVSEGC--------GAYIAVKQEMFQP-TASIKDRPAVAMLED-----AENKNLISPGK-------- 116 (307)
Q Consensus 59 ~~~~g~TPl~~~~~l~~~~--------g~~l~~K~E~~np-tGS~KdR~a~~~l~~-----a~~~g~~~~g~-------- 116 (307)
+.++++|||++++++++.+ +.+||+|+|++|| |||||||++.++|.+ +++.|.++++.
T Consensus 65 ~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~ 144 (431)
T TIGR02035 65 TGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEK 144 (431)
T ss_pred cCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcch
Confidence 4599999999999998754 4699999999999 999999999999864 77889887764
Q ss_pred --------cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhC
Q 021775 117 --------TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLEST 188 (307)
Q Consensus 117 --------~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~ 188 (307)
++||++|+||||+|+|++|+.+|++|+||||++++..|++.++.|||+|+.+++ +|+++.+.+++++++.
T Consensus 145 ~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~ 222 (431)
T TIGR02035 145 KFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADAD 222 (431)
T ss_pred hhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999999999999999997 4999999999999887
Q ss_pred CCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCC
Q 021775 189 PNAFMLQQFSNPANTRVHFETTGPEIWEDTMG--------QVDIFVMGIGSGGTVSGVGQYLKSQ-NPNVKIYGVEPAES 259 (307)
Q Consensus 189 ~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~--------~~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVe~~~~ 259 (307)
+++|++++ .|+.++.+||+|+|+||++|+++ .||+|++|+|+||+++|++++||++ +|++|||+|||+++
T Consensus 223 ~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s 301 (431)
T TIGR02035 223 PMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHS 301 (431)
T ss_pred CCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCC
Confidence 66788887 45555557999999999999953 4779999999999999999999997 89999999999999
Q ss_pred cccc----CCC-----------CcCcccCccCCCCCcc---cccccccCcEEEECHHHHHHhccC
Q 021775 260 NILN----GGK-----------PGPHLITGNGVGFKPD---ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 260 ~~~~----~~~-----------~~~~~~~gi~~~~~p~---~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+++. .+. ...|+++||+++..+. .+.++++|+++.|||+|++++++.
T Consensus 302 ~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~ 366 (431)
T TIGR02035 302 PCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRI 366 (431)
T ss_pred HHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 7542 222 1368899999876432 233568999999999999999873
No 51
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=375.35 Aligned_cols=241 Identities=23% Similarity=0.322 Sum_probs=210.2
Q ss_pred ccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHH
Q 021775 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGIS 130 (307)
Q Consensus 51 ~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 130 (307)
+...++++...+++|||+++++++.. |.+||+|+|++|||||||||++.+++.++.+. .++|+++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~~------~~~vv~aSsGN~g~a 82 (310)
T PRK08246 10 VRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPVP------AAGVVAASGGNAGLA 82 (310)
T ss_pred HHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhccc------CCeEEEeCCCHHHHH
Confidence 34566789999999999999999876 78999999999999999999999999887662 346999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHH
Q 021775 131 MAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETT 210 (307)
Q Consensus 131 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~ 210 (307)
+|++|+++|++|+||||+.+++.|+.+++.|||+|+.+++ +++++++.+++++++. ++||++||+||++++ ||+|+
T Consensus 83 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~t~ 158 (310)
T PRK08246 83 VAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA-GAGTL 158 (310)
T ss_pred HHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chHHH
Confidence 9999999999999999999999999999999999999986 4888999999998886 899999999999996 99999
Q ss_pred HHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCCc-----CcccCccCCCCC-
Q 021775 211 GPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKPG-----PHLITGNGVGFK- 280 (307)
Q Consensus 211 ~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gi~~~~~- 280 (307)
|+||++|+ +.||+||+|+|+||+++|++++|+. .+||+||||++++++. .+++. ...+++++.+..
T Consensus 159 ~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~ 234 (310)
T PRK08246 159 GLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVG 234 (310)
T ss_pred HHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCcc
Confidence 99999999 4799999999999999999999964 4899999999998764 34432 223455665543
Q ss_pred --cccccccccCcEEEECHHHHHHhccC
Q 021775 281 --PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 --p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++.+.++++|+++.|+|+|+++++++
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~ 262 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRA 262 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHH
Confidence 34466788999999999999999874
No 52
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.5e-50 Score=377.73 Aligned_cols=249 Identities=24% Similarity=0.273 Sum_probs=217.0
Q ss_pred CCCCccchhHhhhcccCCCcccccccccccCC-CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCC
Q 021775 47 KDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSG 125 (307)
Q Consensus 47 ~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsG 125 (307)
+|||+. ..+++++++|+|||+++++|++..| .+||+|+|++|||||||||++.+++.++.++| .++|+++|+|
T Consensus 6 ~~~~~~-~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~vv~~SsG 79 (324)
T cd01563 6 ELLPVT-EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVACASTG 79 (324)
T ss_pred hhCCCC-CCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC-----CCEEEEeCCC
Confidence 567766 3356999999999999999998776 69999999999999999999999999999987 4579999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 126 NMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 126 N~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
|||+|+|++|+.+|++|++|||+++++.|+.+++.+||+|+.++. +++++.+.+++++++. ++|++||+||.+++
T Consensus 80 N~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~- 154 (324)
T cd01563 80 NTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE- 154 (324)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-
Confidence 999999999999999999999999999999999999999999987 4888999999998875 78999999999997
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc----CCC-------C
Q 021775 206 HFETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQN------PNVKIYGVEPAESNILN----GGK-------P 267 (307)
Q Consensus 206 G~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~-------~ 267 (307)
||.|+++||++|+++ .||+||+|+||||+++|++.+||+++ ++++||||||++++.+. .+. .
T Consensus 155 g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~ 234 (324)
T cd01563 155 GQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVEN 234 (324)
T ss_pred chhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCC
Confidence 999999999999964 69999999999999999999999875 58999999999987553 221 1
Q ss_pred cCcccCccCCCCCc---c--cccccccCcEEEECHHHHHHhccC
Q 021775 268 GPHLITGNGVGFKP---D--ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 ~~~~~~gi~~~~~p---~--~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..++++|++++..+ . .+.+++.|+++.|+|+|++++++.
T Consensus 235 ~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 278 (324)
T cd01563 235 PETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKL 278 (324)
T ss_pred CCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 35677888775421 1 123467789999999999999874
No 53
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.5e-50 Score=374.39 Aligned_cols=246 Identities=26% Similarity=0.373 Sum_probs=218.1
Q ss_pred cchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 021775 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131 (307)
Q Consensus 52 ~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 131 (307)
...+..|...+|+|||+++++|++.+|.+||+|+|++|||||||||++.+++.++++.|. .++|+++|+||||+|+
T Consensus 5 ~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~al 80 (304)
T cd01562 5 LAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGV 80 (304)
T ss_pred HHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHH
Confidence 345667889999999999999999889999999999999999999999999999987762 2359999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHH
Q 021775 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
|++|+++|++|++|||++.+..|+++++.+||+|+.++++ ++++.+.+++++++. +++|++||+||.+++ ||++++
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~~~~ 156 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQGTIG 156 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHHHHH
Confidence 9999999999999999999999999999999999999974 889999999999986 899999999999986 999999
Q ss_pred HHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCC--
Q 021775 212 PEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFK-- 280 (307)
Q Consensus 212 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~-- 280 (307)
+||++|++ .||+||+|+||||+++|++++||++++++|||+|||.+++++. .+.. ..+.++|++.+..
T Consensus 157 ~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 235 (304)
T cd01562 157 LEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGE 235 (304)
T ss_pred HHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchH
Confidence 99999996 4999999999999999999999999999999999999987653 2322 2556677776532
Q ss_pred -cccccccccCcEEEECHHHHHHhccC
Q 021775 281 -PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 281 -p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
++.+.+++.|+++.|+|+|+++++++
T Consensus 236 ~~~~~~~~~~~~~~~v~d~e~~~a~~~ 262 (304)
T cd01562 236 LTFEIIRKLVDDVVTVSEDEIAAAMLL 262 (304)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 23456788999999999999999874
No 54
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-50 Score=368.34 Aligned_cols=244 Identities=27% Similarity=0.333 Sum_probs=220.9
Q ss_pred hhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 021775 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAF 133 (307)
Q Consensus 54 ~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 133 (307)
.+..+...+-.|||.+.-.|++..|.++|+|+|++||+||||.||+.+++.+.-++++ +.+|+++|+||||.++|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999988766654 456999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHH
Q 021775 134 MAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPE 213 (307)
Q Consensus 134 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~E 213 (307)
+|+++|+|++||||..+|..|.+.++.+||+|++.+. +++++...|.+++++. |+.|+++|++|+.++ |++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-GqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhhc-CcchHHHH
Confidence 9999999999999999999999999999999999987 4999999999999997 999999999999885 99999999
Q ss_pred HHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----cCcccCccCCCCCc---
Q 021775 214 IWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN----GGKP-----GPHLITGNGVGFKP--- 281 (307)
Q Consensus 214 i~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~p--- 281 (307)
|++|+...+++|++|||+||+++||+.++|+..|+++|||||+++|.++. .|++ ..++++|+++..+.
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999655669999999999999999999999999999999999999764 3543 56889999986543
Q ss_pred ccccccccCcEEEECHHHHHHhcc
Q 021775 282 DILDMDVMEKVLEVSSIANAQTIT 305 (307)
Q Consensus 282 ~~~~~~~~d~~v~Vsd~e~~~a~~ 305 (307)
+.+.+.++|+++.|+|+||..|+.
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~ 311 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAIL 311 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHH
Confidence 445678999999999999999874
No 55
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.6e-49 Score=367.66 Aligned_cols=238 Identities=23% Similarity=0.272 Sum_probs=202.6
Q ss_pred cccCCCcccccccccccCC-CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 021775 60 QLIGRTPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMK 138 (307)
Q Consensus 60 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 138 (307)
..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++| .++|+++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLG-----YSGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHc
Confidence 4589999999999998888 49999999999999999999999999999998 46799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCC-Ch-hHHHHHHHHHHHHHHH
Q 021775 139 GYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFS-NP-ANTRVHFETTGPEIWE 216 (307)
Q Consensus 139 G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-np-~~~~~G~~t~~~Ei~~ 216 (307)
|++|+||||..++..|+++++.|||+|+.++++ ++++.+.+++++++. ++|+++++. || .+++ ||+|+++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHHH
Confidence 999999999999999999999999999999874 888999999998875 899999885 77 6786 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCcccc----CCCCc------CcccC-ccCCCC
Q 021775 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQ------NPNVKIYGVEPAESNILN----GGKPG------PHLIT-GNGVGF 279 (307)
Q Consensus 217 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVe~~~~~~~~----~~~~~------~~~~~-gi~~~~ 279 (307)
|++..||+||+|+|+||+++|++++||++ .|.+||++|||.+++++. .+... .++.+ .++.+.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99756999999999999999999999998 799999999999986543 22111 12222 111111
Q ss_pred C-----c----ccccccccCcEEEECHHHHHHhccC
Q 021775 280 K-----P----DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 280 ~-----p----~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
. . ..+..++.++++.|+|+|+++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~ 277 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAEL 277 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHH
Confidence 1 0 1123567779999999999999874
No 56
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-50 Score=347.04 Aligned_cols=249 Identities=23% Similarity=0.384 Sum_probs=223.6
Q ss_pred CCccchhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 021775 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMG 128 (307)
Q Consensus 49 lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g 128 (307)
..+...+.|+...+..||++.++.|.+..|.+||||+|++|.|||||.|||.+.++.+.++.. .+.|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 345667889999999999999999999999999999999999999999999999998873322 4569999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHH
Q 021775 129 ISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFE 208 (307)
Q Consensus 129 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~ 208 (307)
+|+|++|+..|+|++||||.++|..|+..++.|||+|+++++. .+++.+.++++.++. +.+.++||++|..+ +||+
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccc
Confidence 9999999999999999999999999999999999999999974 568888999999998 89999999999988 5999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc----ccCCCC-----cCcccCccCCC-
Q 021775 209 TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNI----LNGGKP-----GPHLITGNGVG- 278 (307)
Q Consensus 209 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~----~~~~~~-----~~~~~~gi~~~- 278 (307)
|+++|++||+ +.+|++|+|+|+||+++|++.+.+.+.|+++|++|||++++. +..|.. ..|+++|....
T Consensus 162 TiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 9999999999 489999999999999999999999999999999999998874 233432 56888998654
Q ss_pred --CCcccccccccCcEEEECHHHHHHhccC
Q 021775 279 --FKPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 279 --~~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
...|.+.++++|++++|+|+|+.+++++
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~ 270 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKL 270 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHH
Confidence 4577888999999999999999999864
No 57
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.7e-48 Score=372.27 Aligned_cols=251 Identities=22% Similarity=0.245 Sum_probs=211.3
Q ss_pred cchhHhh--hcccCCCcccccccccccCC-CeEEEEeCCC-CCCCcchhHHHHHHHHHHHH--cCC--------------
Q 021775 52 TNIKRDV--SQLIGRTPLVFLNKVSEGCG-AYIAVKQEMF-QPTASIKDRPAVAMLEDAEN--KNL-------------- 111 (307)
Q Consensus 52 ~~~~~~v--~~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~-nptGS~KdR~a~~~l~~a~~--~g~-------------- 111 (307)
.....++ ....++|||+++++|++.+| .+||+|+|++ ||||||||||+.+.+.++.. .+.
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 4455667 55889999999999999999 4999999997 59999999999999887752 221
Q ss_pred CC---CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhC
Q 021775 112 IS---PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLEST 188 (307)
Q Consensus 112 ~~---~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~ 188 (307)
+. ++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +++++++.+.+++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 00 11 249999999999999999999999999999999999999999999999999996 4889999999998886
Q ss_pred CCcEEcC-----CCCC-hhHHHHHHHHHHHHHHHhhCC---CCCEEEEecCchhHHHHHHHHHHhcC--CCcEEEEEeCC
Q 021775 189 PNAFMLQ-----QFSN-PANTRVHFETTGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQN--PNVKIYGVEPA 257 (307)
Q Consensus 189 ~~~~~~~-----~~~n-p~~~~~G~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~--~~~~vigVe~~ 257 (307)
+++|++ +|+| |.++.+||+|+++||++|+++ .||+||+|+|+||+++|++++||+++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 888886 6765 445446999999999999975 59999999999999999999999984 57999999999
Q ss_pred CCcccc----CCCC------cCcccCccCCCC---CcccccccccCcEEEECHHHHHHhccC
Q 021775 258 ESNILN----GGKP------GPHLITGNGVGF---KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 258 ~~~~~~----~~~~------~~~~~~gi~~~~---~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+++++. .+.+ ..++++|++++. .++.+.++.+|+++.|+|+|++++++.
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~ 327 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRI 327 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 998763 3332 246788887654 234456788999999999999999874
No 58
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.7e-48 Score=363.12 Aligned_cols=249 Identities=22% Similarity=0.223 Sum_probs=213.0
Q ss_pred CCCCccchhHhhhcccCCCcccccccccccCCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCC
Q 021775 47 KDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSG 125 (307)
Q Consensus 47 ~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsG 125 (307)
+|||+.+..+.+++.+|+|||++++++++.+|. +||+|+|++|||||||||++.+++.++.++| ..+|+++|+|
T Consensus 6 ~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~vv~aSsG 80 (328)
T TIGR00260 6 EFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELG-----NDTVLCASTG 80 (328)
T ss_pred hhcCCCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcC-----CCEEEEeCCc
Confidence 678887666679999999999999999988887 9999999999999999999999999999888 3569999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCC--hhH
Q 021775 126 NMGISMAFMAAMKGYKMVLTMPSY-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSN--PAN 202 (307)
Q Consensus 126 N~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n--p~~ 202 (307)
|||+|+|++|+.+|++|+||||++ +++.|+..++.|||+|+.+++ +++++.+.+++++++. +++++++ .| |.+
T Consensus 81 N~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~ 156 (328)
T TIGR00260 81 NTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYR 156 (328)
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeE
Confidence 999999999999999999999998 899999999999999999987 4889999999998875 5566655 45 888
Q ss_pred HHHHHHHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcCC-----CcEEEEEeCCCCcccc-----CCCC----
Q 021775 203 TRVHFETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQNP-----NVKIYGVEPAESNILN-----GGKP---- 267 (307)
Q Consensus 203 ~~~G~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~-----~~~vigVe~~~~~~~~-----~~~~---- 267 (307)
++ ||+|+++||++|+++ .||+||+|+|+||+++|++.+|+++.. .++|++|||++++++. .++.
T Consensus 157 ~~-g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~ 235 (328)
T TIGR00260 157 LE-GQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIE 235 (328)
T ss_pred ee-eehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCC
Confidence 86 999999999999975 699999999999999999999998521 2499999999996542 2322
Q ss_pred -cCcccCccCCCCCccc------ccccccCcEEEECHHHHHHhccC
Q 021775 268 -GPHLITGNGVGFKPDI------LDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 -~~~~~~gi~~~~~p~~------~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..+.+++++++. |.+ +.++++|+++.|+|+|+++++++
T Consensus 236 ~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~ 280 (328)
T TIGR00260 236 DPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKL 280 (328)
T ss_pred CCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHH
Confidence 245667776553 322 23467899999999999999874
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=5.2e-47 Score=358.91 Aligned_cols=246 Identities=21% Similarity=0.239 Sum_probs=207.9
Q ss_pred HhhhcccCCCcccccccccccCCC-eEEEEeCCCCC-CCcchhHHHHHHHHHHHHc----------------CCCC--CC
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGA-YIAVKQEMFQP-TASIKDRPAVAMLEDAENK----------------NLIS--PG 115 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~np-tGS~KdR~a~~~l~~a~~~----------------g~~~--~g 115 (307)
.++. +..+|||+++++|++.+|. +||+|+|++|+ |||||+||+.+.+.++.++ +.+. .+
T Consensus 15 ~~~~-~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (376)
T TIGR01747 15 KKIP-GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMG 93 (376)
T ss_pred HhCC-CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcC
Confidence 3443 3488999999999999995 99999999985 8999999999999887552 1111 12
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQ 195 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (307)
.++|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++
T Consensus 94 ~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~ 170 (376)
T TIGR01747 94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQ 170 (376)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEec
Confidence 4579999999999999999999999999999999999999999999999999986 4899999999998886 788886
Q ss_pred -----CCCC--hhHHHHHHHHHHHHHHHhhCC----CCCEEEEecCchhHHHHHHHHHHhcCC--CcEEEEEeCCCCccc
Q 021775 196 -----QFSN--PANTRVHFETTGPEIWEDTMG----QVDIFVMGIGSGGTVSGVGQYLKSQNP--NVKIYGVEPAESNIL 262 (307)
Q Consensus 196 -----~~~n--p~~~~~G~~t~~~Ei~~q~~~----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~--~~~vigVe~~~~~~~ 262 (307)
+|+| |+.++ ||+|+++||++|++. .||+||+|+|+||+++|++++|++..+ .++||+|||++++++
T Consensus 171 ~~~~~~~~~~~~~ii~-G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~ 249 (376)
T TIGR01747 171 DTAWEGYEKIPTWIMQ-GYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCL 249 (376)
T ss_pred cccccccccCCchHHH-HHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHH
Confidence 4655 76665 999999999999962 699999999999999999999987754 379999999999976
Q ss_pred c----C--CCC------cCcccCccCCCCC---cccccccccCcEEEECHHHHHHhccC
Q 021775 263 N----G--GKP------GPHLITGNGVGFK---PDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 263 ~----~--~~~------~~~~~~gi~~~~~---p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
. . +++ ..++++||+++.. ++.+.++..+.++.|+|+|+.+|+++
T Consensus 250 ~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~ 308 (376)
T TIGR01747 250 YQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRV 308 (376)
T ss_pred HHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHH
Confidence 3 2 332 2478899987643 45567888999999999999999874
No 60
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.2e-45 Score=331.40 Aligned_cols=203 Identities=41% Similarity=0.596 Sum_probs=190.0
Q ss_pred CcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 021775 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVL 144 (307)
Q Consensus 65 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 144 (307)
|||++++++++..+.+||+|+|++|||||||||++.+++..++++|.+ ++ .+|+++|+||+|.|+|++|+++|+++++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987788999999999999999999999999999999865 43 4599999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC-CCC
Q 021775 145 TMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG-QVD 223 (307)
Q Consensus 145 vvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~-~~d 223 (307)
|+|...+..|+++++.+||+|+.++++ ++++.+.+++++++.++++|+++|.||.+++ ||.|+++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999975 8899999999999855899999999999998 899999999999976 599
Q ss_pred EEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCcCcccCccCCCCCcccccccccCcEEEECHHHHHHh
Q 021775 224 IFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSIANAQT 303 (307)
Q Consensus 224 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~v~Vsd~e~~~a 303 (307)
+||+|+|+||+++|++++|++.+|.+|||+||| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999999 7889999999998
Q ss_pred ccC
Q 021775 304 ITL 306 (307)
Q Consensus 304 ~~l 306 (307)
++.
T Consensus 202 ~~~ 204 (244)
T cd00640 202 IRL 204 (244)
T ss_pred HHH
Confidence 863
No 61
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6.2e-46 Score=353.73 Aligned_cols=243 Identities=22% Similarity=0.229 Sum_probs=202.3
Q ss_pred cccCCCcccccccccccCC-CeEEEEeCCCCC-CCcchhHHHHHHHHHHH--HcCCC--------------C--CCCcEE
Q 021775 60 QLIGRTPLVFLNKVSEGCG-AYIAVKQEMFQP-TASIKDRPAVAMLEDAE--NKNLI--------------S--PGKTTI 119 (307)
Q Consensus 60 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~np-tGS~KdR~a~~~l~~a~--~~g~~--------------~--~g~~~v 119 (307)
....+|||+++++|++.+| .+||+|+|++|+ |||||+||+.+.+.++. +.|.. . .+..+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 3558899999999999999 599999999885 99999999999998753 33310 0 012369
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcC----
Q 021775 120 IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQ---- 195 (307)
Q Consensus 120 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 195 (307)
|++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++. ++++++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999999986 4889999999999886 788886
Q ss_pred -CCCC--hhHHHHHHHHHHHHHHHhhC----CCCCEEEEecCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCccccC--
Q 021775 196 -QFSN--PANTRVHFETTGPEIWEDTM----GQVDIFVMGIGSGGTVSGVGQYLKSQ-NPN-VKIYGVEPAESNILNG-- 264 (307)
Q Consensus 196 -~~~n--p~~~~~G~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~-~~vigVe~~~~~~~~~-- 264 (307)
+|+| |..+ +||+|+++||++|++ ..||+||+|+|+||+++|++.+|++. .+. ++||+|||++++++..
T Consensus 194 ~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~ 272 (396)
T TIGR03528 194 EGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSA 272 (396)
T ss_pred cccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHH
Confidence 5765 5555 499999999999996 26999999999999999999999654 443 6999999999987642
Q ss_pred ----CCC------cCcccCccCCCC---CcccccccccCcEEEECHHHHHHhccC
Q 021775 265 ----GKP------GPHLITGNGVGF---KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 265 ----~~~------~~~~~~gi~~~~---~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+ ..++++|++++. .++.+.++++|+++.|+|+|+.+++|+
T Consensus 273 ~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~ 327 (396)
T TIGR03528 273 IADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRI 327 (396)
T ss_pred HhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 321 246888887653 234455788999999999999999874
No 62
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=2e-45 Score=351.79 Aligned_cols=262 Identities=18% Similarity=0.195 Sum_probs=205.6
Q ss_pred hhHhhhcCCCCCCCCccc-hhHhhhcccCCCcccccccccccCC--CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCC
Q 021775 36 SSFAQRLRDLPKDLPATN-IKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112 (307)
Q Consensus 36 ~~~~~~~~~~~~~lp~~~-~~~~v~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~ 112 (307)
..+.++..+.|+|.++.+ ....+.+..++|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++|.
T Consensus 39 ~~~~~~e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~- 117 (419)
T TIGR01415 39 EKLLEQEVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA- 117 (419)
T ss_pred HHHHhccccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-
Confidence 345566778899998874 4445555556899999999998887 689999999999999999999999999999994
Q ss_pred CCCCcEEEe-eCCChHHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCeEEEeCCCCChHH------------
Q 021775 113 SPGKTTIIE-PTSGNMGISMAFMAAMKGYKMVLTMPSYT---SLERRVTMRAFGADLILTDPAKGMGG------------ 176 (307)
Q Consensus 113 ~~g~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~V~~v~~~~~~~~------------ 176 (307)
+++++ +|+||||+|+|++|+.+|++|+||||+.. ++.|+.+++.|||+|+.++++ +++
T Consensus 118 ----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~ 191 (419)
T TIGR01415 118 ----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDH 191 (419)
T ss_pred ----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhccccc
Confidence 34665 68899999999999999999999999843 568999999999999999864 222
Q ss_pred ------HHHHHHHHHHhCC-CcEEcCCCCChhHHHHHHHHHHHHHHHhhCC---CCCEEEEecCchhHHHHHHHHHHhc-
Q 021775 177 ------TVKKAQELLESTP-NAFMLQQFSNPANTRVHFETTGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQ- 245 (307)
Q Consensus 177 ------~~~~a~~~~~~~~-~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~- 245 (307)
++..+.+.+++.+ ..|+.+++.|+. . .||+++|+||++|+++ .||+||+|+|+||+++|++.+|.+.
T Consensus 192 ~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~~-~-~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~ 269 (419)
T TIGR01415 192 PGSLGIAISEAIEYALSDEDTKYSLGSVLNHV-L-LHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADK 269 (419)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEeCCCCcHH-H-HHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHH
Confidence 3556667766543 457777776743 3 4999999999999964 4999999999999999999988432
Q ss_pred ---CCCcEEEEEeCCCCccccCCCC-----------cCcccCccCCCCCcccc-----------------cccccCcEEE
Q 021775 246 ---NPNVKIYGVEPAESNILNGGKP-----------GPHLITGNGVGFKPDIL-----------------DMDVMEKVLE 294 (307)
Q Consensus 246 ---~~~~~vigVe~~~~~~~~~~~~-----------~~~~~~gi~~~~~p~~~-----------------~~~~~d~~v~ 294 (307)
.+++|||+|||++++.+..+.. ....+.++|.+++|... .++.+++++.
T Consensus 270 l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~ 349 (419)
T TIGR01415 270 LSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARA 349 (419)
T ss_pred hcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEE
Confidence 2589999999999988765431 01223455555443321 1344557899
Q ss_pred ECHHHHHHhccC
Q 021775 295 VSSIANAQTITL 306 (307)
Q Consensus 295 Vsd~e~~~a~~l 306 (307)
|+|+|+++|+++
T Consensus 350 V~d~e~~~a~r~ 361 (419)
T TIGR01415 350 YDQEEAFEAAVI 361 (419)
T ss_pred ECHHHHHHHHHH
Confidence 999999999874
No 63
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=354.20 Aligned_cols=289 Identities=22% Similarity=0.159 Sum_probs=243.8
Q ss_pred HHHhhccc----------C-CCCCceeeecccccCCCCCCchhHhhhcCCCC---CCCCccchhHhhhcccCCCcccccc
Q 021775 6 RSFLKKRA----------L-TCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP---KDLPATNIKRDVSQLIGRTPLVFLN 71 (307)
Q Consensus 6 ~~~~~~~~----------c-~Cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~~~~v~~~~g~TPl~~~~ 71 (307)
++|.+|+. | +||+.|.+.|++.... .+.+..........| ++||.. ..+.+++.+|.||+++.+
T Consensus 6 ~rc~~cg~~f~~a~~~~~c~~cGl~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~l~eg~tp~~~~~ 83 (411)
T COG0498 6 LRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLE-EIDKLLGLSYPELAWRYLELLPVG-EIPAVSLGEGGTPLYKAP 83 (411)
T ss_pred eecCCCCcchhhHHhhCcCCcCCcccccccCccchh-hhhhhhcccccchHHHHHHHCCCC-CcchhhhhhccCccccCc
Confidence 67888885 9 9999999999976532 122223333444667 567765 345689999999999999
Q ss_pred cccccCCC---eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 72 KVSEGCGA---YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 72 ~l~~~~g~---~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++...+|. ++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|+++++.|++|+|++|.
T Consensus 84 ~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~ 158 (411)
T COG0498 84 ALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPK 158 (411)
T ss_pred ccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecC
Confidence 88888874 49999999999999999999999999999983 36999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC-CCCEEE
Q 021775 149 Y-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG-QVDIFV 226 (307)
Q Consensus 149 ~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~-~~d~vv 226 (307)
+ ++..|+.|+..+||+++.+++. ||++.+.+++++++. ++++.....||++++ ||+|+++||++|+++ .||+|+
T Consensus 159 g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~fe~~~ql~~~~p~~v~ 234 (411)
T COG0498 159 GKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAFEIAEQLGWKAPDHVV 234 (411)
T ss_pred CCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHhHHHHHhCCCCCCeEE
Confidence 8 9999999999999999999985 999999999999976 667777778999998 999999999999985 599999
Q ss_pred EecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC-----CcCcccCccCCCCCccccc------cccc
Q 021775 227 MGIGSGGTVSGVGQYLKSQNP------NVKIYGVEPAESNILNGGK-----PGPHLITGNGVGFKPDILD------MDVM 289 (307)
Q Consensus 227 ~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~~~~-----~~~~~~~gi~~~~~p~~~~------~~~~ 289 (307)
+|+|+||++.|+|++|++..| .+++.+||++++.++.... ...|++++|.++. |.++. ++..
T Consensus 235 vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~-p~n~~r~l~a~~es~ 313 (411)
T COG0498 235 VPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN-PSNWERALFALRESG 313 (411)
T ss_pred EeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-CCCHHHHHHHHHhcC
Confidence 999999999999999999875 4789999999988765421 3567788887764 54442 2345
Q ss_pred CcEEEECHHHHHHhccC
Q 021775 290 EKVLEVSSIANAQTITL 306 (307)
Q Consensus 290 d~~v~Vsd~e~~~a~~l 306 (307)
+..+.|||+|+++++++
T Consensus 314 g~~~~vsdeEi~~a~~~ 330 (411)
T COG0498 314 GLAVAVSDEEILEAIKL 330 (411)
T ss_pred CceEEeCHHHHHHHHHH
Confidence 66999999999999874
No 64
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=9.5e-45 Score=347.66 Aligned_cols=265 Identities=20% Similarity=0.243 Sum_probs=207.5
Q ss_pred hhHhhhcCCCCCCCCccchhHhhhcccCCCcccccccccccCC--CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCC
Q 021775 36 SSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113 (307)
Q Consensus 36 ~~~~~~~~~~~~~lp~~~~~~~v~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~ 113 (307)
..+.++..+.|+|+|+.+....+....++|||+++++|++.+| .+||+|+|++|||||||||++..++..++++|.
T Consensus 49 ~~~~~~~~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-- 126 (427)
T PRK12391 49 MELIEQEVSTERYIDIPEEVREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-- 126 (427)
T ss_pred HHHhhccCCcccccCChHHHHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC--
Confidence 4556667788999999876666677778999999999998887 589999999999999999999999999999994
Q ss_pred CCCcEEEe-eCCChHHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHHcCCeEEEeCCCCC----------------
Q 021775 114 PGKTTIIE-PTSGNMGISMAFMAAMKGYKMVLTMPSY---TSLERRVTMRAFGADLILTDPAKG---------------- 173 (307)
Q Consensus 114 ~g~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~---~~~~k~~~~~~~GA~V~~v~~~~~---------------- 173 (307)
+++++ +|+||||+|+|++|+.+|++|+||||+. .++.|+.+++.|||+|+.++++.+
T Consensus 127 ---~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gs 203 (427)
T PRK12391 127 ---KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGS 203 (427)
T ss_pred ---CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCcccccc
Confidence 34665 5789999999999999999999999974 366899999999999999986411
Q ss_pred hHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhC---CCCCEEEEecCchhHHHHHHHHHHh---cC-
Q 021775 174 MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTM---GQVDIFVMGIGSGGTVSGVGQYLKS---QN- 246 (307)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~---~~~d~vv~pvG~Gg~~~Gi~~~~k~---~~- 246 (307)
...++..+.+.+++.++.+|..++.++... .||.++|+||++|++ ..||+||+|+|+||+++|++.+|.+ .+
T Consensus 204 l~~ai~~A~e~a~~~~~~~y~~~s~~~~~~-~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~ 282 (427)
T PRK12391 204 LGIAISEAVEDAAKRPDTKYALGSVLNHVL-LHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGK 282 (427)
T ss_pred HHHHHHHHHHHHHhCCCcEEEcCCCCcHHH-hhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCC
Confidence 112566777777665454444333322334 599999999999996 3599999999999999999997743 34
Q ss_pred CCcEEEEEeCCCCccccCCCC--------c--C-cccCccCCCCCccccc-----------------ccccCcEEEECHH
Q 021775 247 PNVKIYGVEPAESNILNGGKP--------G--P-HLITGNGVGFKPDILD-----------------MDVMEKVLEVSSI 298 (307)
Q Consensus 247 ~~~~vigVe~~~~~~~~~~~~--------~--~-~~~~gi~~~~~p~~~~-----------------~~~~d~~v~Vsd~ 298 (307)
+++|||+|||++|+++..+.. . + ..+.++|.+++|..+. ...+.+.+.|+|+
T Consensus 283 ~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~ 362 (427)
T PRK12391 283 KDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQT 362 (427)
T ss_pred CCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHH
Confidence 889999999999998865421 1 1 2345666665444321 2334588999999
Q ss_pred HHHHhccC
Q 021775 299 ANAQTITL 306 (307)
Q Consensus 299 e~~~a~~l 306 (307)
|+++|+++
T Consensus 363 e~~~a~~~ 370 (427)
T PRK12391 363 EVFEAAVL 370 (427)
T ss_pred HHHHHHHH
Confidence 99999874
No 65
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-45 Score=319.13 Aligned_cols=249 Identities=33% Similarity=0.554 Sum_probs=216.1
Q ss_pred hhhcccCCCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 57 ~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
-+...+|+|||++++.|++..|++|+.|.|.+||.||.|||.|.+++..|++.|++.||.. |++.++||+|+++|..|.
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhhh
Confidence 5677899999999999999999999999999999999999999999999999999999965 999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC--ChHHHHHHHHHHHHhCC------CcEEcCCCCChhHHHHHHH
Q 021775 137 MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK--GMGGTVKKAQELLESTP------NAFMLQQFSNPANTRVHFE 208 (307)
Q Consensus 137 ~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~np~~~~~G~~ 208 (307)
.+|++|+|+||+..+.+|.+.++.+||+|..|++.. +-..-...|++.+.+.+ ..+|.+||+|+.|+.+||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999987642 22233334444443332 2367899999999999999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCccc--------c-----CCC----CcCc
Q 021775 209 TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPN-VKIYGVEPAESNIL--------N-----GGK----PGPH 270 (307)
Q Consensus 209 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~-~~vigVe~~~~~~~--------~-----~~~----~~~~ 270 (307)
|+|+||+.|..+++|++++.+|||||++|+.++||+..+. ++++.++|-|+... + +|+ ...+
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999999876 89999999998421 1 122 2578
Q ss_pred ccCccCCCCCcccc--cccccCcEEEECHHHHHHhccC
Q 021775 271 LITGNGVGFKPDIL--DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 271 ~~~gi~~~~~p~~~--~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+|||.+.+..++ ..+++|+.+.|+|++++++.|.
T Consensus 281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~ 318 (391)
T KOG1481|consen 281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRY 318 (391)
T ss_pred hhhcccccccccccccchhhhhhheecChHHHHHHHHH
Confidence 88999998877665 4577999999999999998763
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-43 Score=336.30 Aligned_cols=244 Identities=23% Similarity=0.263 Sum_probs=193.9
Q ss_pred hhcccC-CCcccccccccccC-CCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEGC-GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
...++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..|++.|. .+.|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 79999999999988 5799999999999999999999999999999884 33455789999999999999
Q ss_pred HHcCCeEEEEECCCCCH---HHHHHHHHcCCeEEEeCC-CCChHHHHHHHHH-HHHhCCCcEEc-CCC----CChhHHHH
Q 021775 136 AMKGYKMVLTMPSYTSL---ERRVTMRAFGADLILTDP-AKGMGGTVKKAQE-LLESTPNAFML-QQF----SNPANTRV 205 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~~~---~k~~~~~~~GA~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~----~np~~~~~ 205 (307)
+++|++|+||||+..+. .|+.+|+.|||+|+.++. ..+++++.+.+.+ ++++.++.+|+ ++. .+|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999986433 567899999999999984 3468888888754 56553355555 232 22445556
Q ss_pred HHHHHHHHHHHhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCC------
Q 021775 206 HFETTGPEIWEDTM----GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAE--------SNILNGGKP------ 267 (307)
Q Consensus 206 G~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~--------~~~~~~~~~------ 267 (307)
||+|+++||.+|+. ..||+||+|+|+||+++|++.+|++ .++++||||||.+ ++++..+++
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~ 289 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGF 289 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccc
Confidence 99999999999973 3599999999999999999999987 4899999999999 666655433
Q ss_pred --------------cCcccCccCCCCC-ccc--ccccccCcEEEECHHHHHHhccC
Q 021775 268 --------------GPHLITGNGVGFK-PDI--LDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 --------------~~~~~~gi~~~~~-p~~--~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..+++.|++.+.+ |.. +.....++++.|+|+|+++|+++
T Consensus 290 ~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~ 345 (402)
T PRK13028 290 KSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFL 345 (402)
T ss_pred ceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHH
Confidence 1345567664322 332 33455688999999999999874
No 67
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.2e-43 Score=337.60 Aligned_cols=244 Identities=22% Similarity=0.275 Sum_probs=189.1
Q ss_pred hhcccC-CCcccccccccccCC-CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~~g-~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
+..+.+ +|||+++++|++.+| .+||+|+|++|||||||||++..++..+++.|. .+.|+++|+||||+|+|++|
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a 118 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAA 118 (385)
T ss_pred HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHH
Confidence 344454 899999999999888 699999999999999999999999999998883 33355689999999999999
Q ss_pred HHcCCeEEEEECCC-CCH--HHHHHHHHcCCeEEEeCCC-CChHHHH-HHHHHHHHhCCCcEEc-CCCCC----hhHHHH
Q 021775 136 AMKGYKMVLTMPSY-TSL--ERRVTMRAFGADLILTDPA-KGMGGTV-KKAQELLESTPNAFML-QQFSN----PANTRV 205 (307)
Q Consensus 136 ~~~G~~~~ivvp~~-~~~--~k~~~~~~~GA~V~~v~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~n----p~~~~~ 205 (307)
+++|++|+||||+. .+. .|+.+++.|||+|+.++.. ..++++. +.+++++++.++.+|+ +++.| |.+++.
T Consensus 119 ~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~ 198 (385)
T TIGR00263 119 ALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRD 198 (385)
T ss_pred HHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHH
Confidence 99999999999985 443 5788999999999999753 3466764 4445556654455555 45443 355656
Q ss_pred HHHHHHHHHHHhhC---C-CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC------
Q 021775 206 HFETTGPEIWEDTM---G-QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN--------ILNGGKP------ 267 (307)
Q Consensus 206 G~~t~~~Ei~~q~~---~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~------ 267 (307)
||+|+|+||++|+. + .||+||+|+|+||+++|++.+|.+ .|++|||||||+++. .+..+.+
T Consensus 199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~ 277 (385)
T TIGR00263 199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGM 277 (385)
T ss_pred HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCc
Confidence 99999999999983 2 489999999999999999998865 699999999999852 2333321
Q ss_pred --------------cCcccCccCCCCC-cc--cccccccCcEEEECHHHHHHhccC
Q 021775 268 --------------GPHLITGNGVGFK-PD--ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 --------------~~~~~~gi~~~~~-p~--~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..++++|++.... |. .+.....|+++.|+|+|++++++.
T Consensus 278 ~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~ 333 (385)
T TIGR00263 278 KTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKL 333 (385)
T ss_pred ccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 1244556554322 22 233456788999999999999874
No 68
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.3e-43 Score=336.43 Aligned_cols=244 Identities=21% Similarity=0.293 Sum_probs=189.7
Q ss_pred hhcccC-CCcccccccccccC-CCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEGC-GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
...++| +|||+++++|++.+ |.+||+|+|++|||||||+|++...+..|++.|+ .+.|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456677 59999999999998 5799999999999999999999999999999984 34455689999999999999
Q ss_pred HHcCCeEEEEECCCC-C--HHHHHHHHHcCCeEEEeCC-CCChHHHHHHHHH-HHHhCCCcEE-cCCCCC----hhHHHH
Q 021775 136 AMKGYKMVLTMPSYT-S--LERRVTMRAFGADLILTDP-AKGMGGTVKKAQE-LLESTPNAFM-LQQFSN----PANTRV 205 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~-~--~~k~~~~~~~GA~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~n----p~~~~~ 205 (307)
+++|++|+||||+.. + ..|+.+|+.+||+|+.++. ..++.++.+.+.+ +.++.++.+| ++++.+ |.++..
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999853 3 3577889999999999984 3457766665544 5655334444 443332 344556
Q ss_pred HHHHHHHHHHHhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC------
Q 021775 206 HFETTGPEIWEDTM----GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN--------ILNGGKP------ 267 (307)
Q Consensus 206 G~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~------ 267 (307)
||+|+|.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++. ++..+++
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~ 285 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGA 285 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccc
Confidence 99999999999984 2599999999999999999999976 789999999999862 2322322
Q ss_pred --------------cCcccCccCCCCC-cc--cccccccCcEEEECHHHHHHhccC
Q 021775 268 --------------GPHLITGNGVGFK-PD--ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 --------------~~~~~~gi~~~~~-p~--~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..+++.|+..+.+ |. .+.....++++.|+|+|+++|+++
T Consensus 286 ~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~ 341 (397)
T PRK04346 286 KTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQL 341 (397)
T ss_pred cceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 2345556654322 22 234455678999999999999874
No 69
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-43 Score=334.75 Aligned_cols=243 Identities=19% Similarity=0.255 Sum_probs=190.0
Q ss_pred hhccc-CCCcccccccccccC-CCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEe-eCCChHHHHHHHH
Q 021775 58 VSQLI-GRTPLVFLNKVSEGC-GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIE-PTSGNMGISMAFM 134 (307)
Q Consensus 58 v~~~~-g~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~alA~~ 134 (307)
...+. .+|||++++++++.+ +.+||+|+|++|||||||||.+..++..+.++|. +.+++ +|+||||+|+|++
T Consensus 27 ~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~ 101 (365)
T cd06446 27 YKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATA 101 (365)
T ss_pred hhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHH
Confidence 44444 489999999999888 5699999999999999999999999999999884 34565 6899999999999
Q ss_pred HHHcCCeEEEEECCCCC---HHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHH-HHhC-CCcEEcCCCC----ChhHHH
Q 021775 135 AAMKGYKMVLTMPSYTS---LERRVTMRAFGADLILTDPAK-GMGGTVKKAQEL-LEST-PNAFMLQQFS----NPANTR 204 (307)
Q Consensus 135 a~~~G~~~~ivvp~~~~---~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~-~~~~-~~~~~~~~~~----np~~~~ 204 (307)
|+++|++|+||||+..+ ..|+.+++.+||+|+.++... .+++++..+.+. .++. +.+|+++++. ++.+++
T Consensus 102 a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 181 (365)
T cd06446 102 CALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVR 181 (365)
T ss_pred HHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHH
Confidence 99999999999998643 367889999999999998642 356666555443 4432 2355554432 344566
Q ss_pred HHHHHHHHHHHHhhCC----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC--------C------
Q 021775 205 VHFETTGPEIWEDTMG----QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGG--------K------ 266 (307)
Q Consensus 205 ~G~~t~~~Ei~~q~~~----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~--------~------ 266 (307)
+||+|+|+||++|+++ .||+||+|+|+||+++|+++++++ .+++|||||||++++.+... .
T Consensus 182 ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~ 260 (365)
T cd06446 182 DFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHG 260 (365)
T ss_pred HhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecc
Confidence 7999999999999963 599999999999999999999987 46899999999998776421 1
Q ss_pred --------------CcCcccCccCCC-CCccc--ccccccCcEEEECHHHHHHhccC
Q 021775 267 --------------PGPHLITGNGVG-FKPDI--LDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 267 --------------~~~~~~~gi~~~-~~p~~--~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
...++++||+.+ ..|.. +..+++|+++.|+|+|+++++++
T Consensus 261 ~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~ 317 (365)
T cd06446 261 LKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKL 317 (365)
T ss_pred hhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHH
Confidence 123455666643 22222 44667899999999999999874
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.5e-44 Score=336.67 Aligned_cols=245 Identities=22% Similarity=0.192 Sum_probs=200.7
Q ss_pred HhhhcccCCCcccccccccccCCCeEEEEeCCCCCC--CcchhHHHHHHHHHHHHcCCCCCCCcEEEeeC--CChHHHHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPT--ASIKDRPAVAMLEDAENKNLISPGKTTIIEPT--SGNMGISM 131 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~S--sGN~g~al 131 (307)
+++++.+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.+++++| .++||++| +||||+|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g-----~~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQG-----ADTLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcC-----CCEEEEcCcchhHHHHHH
Confidence 457889999999999999988889999999999997 5999999999999999888 35688875 39999999
Q ss_pred HHHHHHcCCeEEEEECCCCCH--------HHHHHHHHcCCeEEEeCCCCChHH-HHHHHHHHHHhCCCcE-EcCCCCChh
Q 021775 132 AFMAAMKGYKMVLTMPSYTSL--------ERRVTMRAFGADLILTDPAKGMGG-TVKKAQELLESTPNAF-MLQQFSNPA 201 (307)
Q Consensus 132 A~~a~~~G~~~~ivvp~~~~~--------~k~~~~~~~GA~V~~v~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~np~ 201 (307)
|++|+.+|++|+||||+..+. .|+..++.|||+|+.++.+.+..+ +...++++.++.+..| +.+++.||.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998775 456899999999999986533333 4455666666643333 457889999
Q ss_pred HHHHHHHHHHHHHHHhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC---cCcccCcc
Q 021775 202 NTRVHFETTGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKP---GPHLITGN 275 (307)
Q Consensus 202 ~~~~G~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gi 275 (307)
+.+ ||.|+++||++|+++ .||+||+|+||||+++|++++||+++|+++||||||++++.+....+ ..+.++++
T Consensus 162 ~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~ 240 (331)
T PRK03910 162 GAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELL 240 (331)
T ss_pred hHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHc
Confidence 997 889999999999963 69999999999999999999999999999999999999865432211 23344555
Q ss_pred CCC--CCc--ccccccccCcEEEECHHHHHHhccC
Q 021775 276 GVG--FKP--DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 276 ~~~--~~p--~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+ ..+ +.+.++++|+++.|+|+|++++++.
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~ 275 (331)
T PRK03910 241 GLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKL 275 (331)
T ss_pred CCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 544 112 2456788999999999999999874
No 71
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.8e-44 Score=332.81 Aligned_cols=239 Identities=21% Similarity=0.148 Sum_probs=193.4
Q ss_pred ccCCCcccccccccccCCCeEEEEeCCCCCC--CcchhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHHHHHHHHHH
Q 021775 61 LIGRTPLVFLNKVSEGCGAYIAVKQEMFQPT--ASIKDRPAVAMLEDAENKNLISPGKTTIIEP--TSGNMGISMAFMAA 136 (307)
Q Consensus 61 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~alA~~a~ 136 (307)
.-.+|||+++++|++..|.+||+|+|++||| ||||||++.+++.+++++| .++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g-----~~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKG-----ADTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHH
Confidence 4478999999999988889999999999998 9999999999999999998 4569998 55999999999999
Q ss_pred HcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHH----hCC-CcEEcCCCCChhHHHHHHHHH
Q 021775 137 MKGYKMVLTMPSYT-SLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE----STP-NAFMLQQFSNPANTRVHFETT 210 (307)
Q Consensus 137 ~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~np~~~~~G~~t~ 210 (307)
++|++++||||+.. +..+..+++.|||+|+.++.. ++.+..+.++++++ +.+ .+++.+++.||.+.+ |++++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999853 24444444444433 321 345668899999998 78889
Q ss_pred HHHHHHhhCC--CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC---CcCcccCccCCC-CCcccc
Q 021775 211 GPEIWEDTMG--QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGK---PGPHLITGNGVG-FKPDIL 284 (307)
Q Consensus 211 ~~Ei~~q~~~--~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gi~~~-~~p~~~ 284 (307)
++||++|+++ .||+||+|+|||||++|++++||+++|+++||||||+.+....... ..++++++++.+ ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 6999999999999999999999999999999999987663211111 134566777664 223445
Q ss_pred cccccCcEEEECHHHHHHhccC
Q 021775 285 DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 285 ~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..++.++.+.|+|+|++++++.
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~ 258 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKK 258 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHH
Confidence 5677888999999999999873
No 72
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=6.6e-43 Score=332.18 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=189.8
Q ss_pred HhhhcccC-CCcccccccccccC------CCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 021775 56 RDVSQLIG-RTPLVFLNKVSEGC------GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMG 128 (307)
Q Consensus 56 ~~v~~~~g-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g 128 (307)
..+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|++.|. .+.|+++|+||||
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG 132 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHG 132 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHH
Confidence 45777887 89999999999877 4799999999999999999999999999998873 3334455689999
Q ss_pred HHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCeEEEeCC-CCChHHHHH-HHHHHHHhCCCcEEc-CCCC--C-
Q 021775 129 ISMAFMAAMKGYKMVLTMPSYT---SLERRVTMRAFGADLILTDP-AKGMGGTVK-KAQELLESTPNAFML-QQFS--N- 199 (307)
Q Consensus 129 ~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~V~~v~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--n- 199 (307)
+|+|++|+++|++|+||||+.. ...|+.+|+.|||+|+.++. ..+++++.. .+++++++.++.+|+ ++.. +
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P 212 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 212 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence 9999999999999999999853 34677799999999999954 346888874 445677753344444 3332 2
Q ss_pred -hhHHHHHHHHHHHHHHHhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC--------ccccCCC
Q 021775 200 -PANTRVHFETTGPEIWEDT----MGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES--------NILNGGK 266 (307)
Q Consensus 200 -p~~~~~G~~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~--------~~~~~~~ 266 (307)
|..+..|++|+|.||.+|+ +..||+||+|+|+||+++|++++|++ .|++|||||||+++ +++..++
T Consensus 213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~ 291 (410)
T PLN02618 213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGE 291 (410)
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCC
Confidence 2333359999999998776 33599999999999999999999975 68999999999997 2333332
Q ss_pred C--------------------cCcccCccCCCCC-cc--cccccccCcEEEECHHHHHHhccC
Q 021775 267 P--------------------GPHLITGNGVGFK-PD--ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 267 ~--------------------~~~~~~gi~~~~~-p~--~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+ ..++++||..+-+ |. .+.....++++.|+|+|+++|+++
T Consensus 292 ~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~ 354 (410)
T PLN02618 292 VGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQR 354 (410)
T ss_pred cceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHH
Confidence 2 2345566655322 22 133446889999999999999864
No 73
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.4e-43 Score=327.27 Aligned_cols=237 Identities=38% Similarity=0.518 Sum_probs=194.2
Q ss_pred hhcccCCCcccccc--cccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 021775 58 VSQLIGRTPLVFLN--KVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMA 135 (307)
Q Consensus 58 v~~~~g~TPl~~~~--~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 135 (307)
|++++++|||++++ .+.+..+.+||+|+|++|||||||||++.+++.+++++| .++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~-----~~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKG-----GRTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTT-----TSEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccc-----cceeeeeccCCceehhhhhh
Confidence 57899999999975 455566789999999999999999999999999999886 46799999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh-------CCCcEEcCCCCChhHHHHHHH
Q 021775 136 AMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES-------TPNAFMLQQFSNPANTRVHFE 208 (307)
Q Consensus 136 ~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~np~~~~~G~~ 208 (307)
+.+|++|++|+|++++..|+.+++.+||+|+.++.. ++++.+.+.+++++ .++. ++|++||... .||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVI-AGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHH-HHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchhhh-hhhh
Confidence 999999999999999999999999999999988763 44444444444332 2122 6777666666 4999
Q ss_pred HHHHHHHHhhCCCCCE--EEEecCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCcccc----CCCC----cCcccCccC
Q 021775 209 TTGPEIWEDTMGQVDI--FVMGIGSGGTVSGVGQYLKS--QNPNVKIYGVEPAESNILN----GGKP----GPHLITGNG 276 (307)
Q Consensus 209 t~~~Ei~~q~~~~~d~--vv~pvG~Gg~~~Gi~~~~k~--~~~~~~vigVe~~~~~~~~----~~~~----~~~~~~gi~ 276 (307)
++++||++|++ .||. ||+|+|+||+++|++++|++ . |.+||||||+.+++.+. .+.. ..+.++||+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999996 6666 99999999999999999999 7 89999999999997764 2332 224556888
Q ss_pred CCC-Cc----ccccccccCcEEEECHHHHHHhccC
Q 021775 277 VGF-KP----DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~~-~p----~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+. .+ +.+.++++++++.|+|+|++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~ 263 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRE 263 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 765 22 2245677788899999999999863
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2e-43 Score=331.35 Aligned_cols=245 Identities=18% Similarity=0.181 Sum_probs=198.6
Q ss_pred HhhhcccCCCcccccccccccCC--CeEEEEeCCCCCC---CcchhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPT---ASIKDRPAVAMLEDAENKNLISPGKTTIIEP--TSGNMG 128 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~npt---GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g 128 (307)
+++.+.+|+|||++++++++..| .+||+|+|++||+ ||||||.+.+++.+++++|. .+|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHH
Confidence 47889999999999999988887 6999999999998 77899999999999999994 568887 779999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHHcCCeEEEeCCCC--ChHHHHHHHHHHHHhCCCcEE-cCCC
Q 021775 129 ISMAFMAAMKGYKMVLTMPSYTS--------LERRVTMRAFGADLILTDPAK--GMGGTVKKAQELLESTPNAFM-LQQF 197 (307)
Q Consensus 129 ~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~~~~~GA~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~ 197 (307)
+|+|++|+++|++|+||||..++ ..|+.+++.|||+|+.++.+. .+.++++.+.+..++..+..| ++.+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999876544 237778999999999998641 234677777777666334344 4444
Q ss_pred C--ChhHHHHHHHHHHHHHHHh---hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC---CcC
Q 021775 198 S--NPANTRVHFETTGPEIWED---TMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGK---PGP 269 (307)
Q Consensus 198 ~--np~~~~~G~~t~~~Ei~~q---~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~ 269 (307)
. +|...+ |+.++++||++| ++++||+||+|+|||||++|++++||+..|++|||||||++++.+...+ ..+
T Consensus 162 ~~~~~~~~~-G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~ 240 (337)
T PRK12390 162 ASDHPLGGL-GFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIAR 240 (337)
T ss_pred CCCCCcccH-HHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHH
Confidence 2 355565 899999999998 4457999999999999999999999999999999999999987664332 134
Q ss_pred cccCccCCCC--Ccc--cccccccCcEEEECHHHHHHhccC
Q 021775 270 HLITGNGVGF--KPD--ILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 270 ~~~~gi~~~~--~p~--~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+++++.+. .+. .+..+++|+.+.|+|+|+++++++
T Consensus 241 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~ 281 (337)
T PRK12390 241 NTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRL 281 (337)
T ss_pred HHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHH
Confidence 5556666553 222 356788999999999999999874
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.6e-43 Score=329.56 Aligned_cols=245 Identities=18% Similarity=0.196 Sum_probs=200.2
Q ss_pred HhhhcccCCCcccccccccccCCC--eEEEEeCCCCCC---CcchhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHH
Q 021775 56 RDVSQLIGRTPLVFLNKVSEGCGA--YIAVKQEMFQPT---ASIKDRPAVAMLEDAENKNLISPGKTTIIEP--TSGNMG 128 (307)
Q Consensus 56 ~~v~~~~g~TPl~~~~~l~~~~g~--~l~~K~E~~npt---GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g 128 (307)
+++.+.+|+|||++++++++.+|. +||+|+|++||+ ||||||.+.+++.+|+++| .++|+++ |+||||
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G-----~~~vvs~ggs~gN~g 80 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQG-----CTTLVSIGGIQSNQT 80 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcC-----CCEEEECCCCcchHH
Confidence 478899999999999999988874 999999999987 7779999999999999999 4568877 669999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHHcCCeEEEeCCCC--ChHHHHHHHHHHHHhC-CCcEEcCCC
Q 021775 129 ISMAFMAAMKGYKMVLTMPSYTS--------LERRVTMRAFGADLILTDPAK--GMGGTVKKAQELLEST-PNAFMLQQF 197 (307)
Q Consensus 129 ~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~~~~~GA~V~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~ 197 (307)
+|+|++|+++|++|+||||+..+ ..|+.+++.|||+|+.++... +..+++..+.+.+++. +..|+++.+
T Consensus 81 ~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~ 160 (337)
T TIGR01274 81 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAG 160 (337)
T ss_pred HHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCC
Confidence 99999999999999999998542 579999999999999998642 1235666666665554 233665554
Q ss_pred --CChhHHHHHHHHHHHHHHHhh---CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC---CcC
Q 021775 198 --SNPANTRVHFETTGPEIWEDT---MGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGK---PGP 269 (307)
Q Consensus 198 --~np~~~~~G~~t~~~Ei~~q~---~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~ 269 (307)
.||...+ |+.++++||.+|+ ++.||+||+|+|||||++|++++|+++++++|||||||++++.+.... ...
T Consensus 161 ~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~ 239 (337)
T TIGR01274 161 CSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIAR 239 (337)
T ss_pred CCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHH
Confidence 3577776 8999999999995 346999999999999999999999999999999999999997663321 134
Q ss_pred cccCccCCCC--Cc--ccccccccCcEEEECHHHHHHhccC
Q 021775 270 HLITGNGVGF--KP--DILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 270 ~~~~gi~~~~--~p--~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+.+++++.+. .+ +.+...+.++.+.|+|+|++++++.
T Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~ 280 (337)
T TIGR01274 240 NTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRL 280 (337)
T ss_pred HHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHH
Confidence 5667776542 11 3566778899999999999999864
No 76
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.7e-43 Score=325.64 Aligned_cols=236 Identities=20% Similarity=0.220 Sum_probs=188.9
Q ss_pred CcccccccccccC--CCeEEEEeCCCCCC---CcchhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHHHHHHHHHHH
Q 021775 65 TPLVFLNKVSEGC--GAYIAVKQEMFQPT---ASIKDRPAVAMLEDAENKNLISPGKTTIIEP--TSGNMGISMAFMAAM 137 (307)
Q Consensus 65 TPl~~~~~l~~~~--g~~l~~K~E~~npt---GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~alA~~a~~ 137 (307)
|||+++++|++.+ +.+||+|+|++||| ||||||++.+++.+++++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 56999999999999 56699999999999999884 568988 579999999999999
Q ss_pred cCCeEEEEECCCCC--------HHHHHHHHHcCCeEEEeCCCC--ChHHHHHHHH-HHHHhCCCcEE-cCCC-CChhHHH
Q 021775 138 KGYKMVLTMPSYTS--------LERRVTMRAFGADLILTDPAK--GMGGTVKKAQ-ELLESTPNAFM-LQQF-SNPANTR 204 (307)
Q Consensus 138 ~G~~~~ivvp~~~~--------~~k~~~~~~~GA~V~~v~~~~--~~~~~~~~a~-~~~~~~~~~~~-~~~~-~np~~~~ 204 (307)
+|++|+||||++.+ ..|+.+++.|||+|+.++.+. ...++.+.+. ++.++.+..|+ .+++ +||.+++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999998776 468999999999999998642 1122333333 33343322344 5565 4999997
Q ss_pred HHHHHHHHHHHHhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC---cCcccCccC--
Q 021775 205 VHFETTGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKP---GPHLITGNG-- 276 (307)
Q Consensus 205 ~G~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gi~-- 276 (307)
||.|+++||++|+++ .||+||+|+||||+++|++++||+++|++|||+|||++++.+..... ....+.+++
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999964 69999999999999999999999999999999999999876532111 012222233
Q ss_pred CCCCcccccccccCcEEEECHHHHHHhccC
Q 021775 277 VGFKPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~~~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+..++.+..+++|+++.|+|+|++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~ 264 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKL 264 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHH
Confidence 333456677888999999999999999874
No 77
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.8e-42 Score=342.21 Aligned_cols=244 Identities=19% Similarity=0.249 Sum_probs=191.6
Q ss_pred hhcccC-CCccccccccccc----CC--CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEG----CG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGIS 130 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~----~g--~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 130 (307)
...++| +|||+++++|++. +| .+||+|+|++|||||||||++.+++..+++.|. .+.|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 456788 9999999998753 44 699999999999999999999999999999995 346889999999999
Q ss_pred HHHHHHHcCCeEEEEECCC---CCHHHHHHHHHcCCeEEEeCC-CCChHHHHHHH-HHHHHhCC-CcEEcCCCCCh----
Q 021775 131 MAFMAAMKGYKMVLTMPSY---TSLERRVTMRAFGADLILTDP-AKGMGGTVKKA-QELLESTP-NAFMLQQFSNP---- 200 (307)
Q Consensus 131 lA~~a~~~G~~~~ivvp~~---~~~~k~~~~~~~GA~V~~v~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~np---- 200 (307)
+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++. ..+++++.+.+ ++++++.+ .+|+++++.||
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 467899999999999999984 33677876555 55666533 45778888654
Q ss_pred hHHHHHHHHHHHHHHHhhCC-----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------C
Q 021775 201 ANTRVHFETTGPEIWEDTMG-----QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNG----------G 265 (307)
Q Consensus 201 ~~~~~G~~t~~~Ei~~q~~~-----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~----------~ 265 (307)
.++.+||+|+|+||++|+.. .||+||+|+|+||+++|++++|++ .|.+|||||||.++..... +
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g 553 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTG 553 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccC
Confidence 45656999999999999952 599999999999999999999976 6899999999999753211 1
Q ss_pred CC--------------------cCcccCccCCCCC-cccccccccCcE--EEECHHHHHHhccC
Q 021775 266 KP--------------------GPHLITGNGVGFK-PDILDMDVMEKV--LEVSSIANAQTITL 306 (307)
Q Consensus 266 ~~--------------------~~~~~~gi~~~~~-p~~~~~~~~d~~--v~Vsd~e~~~a~~l 306 (307)
.+ ..+++.||..+-+ |..-.....+++ +.|+|+|+++|.++
T Consensus 554 ~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~ 617 (695)
T PRK13802 554 ELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKD 617 (695)
T ss_pred CccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 10 0123334432212 222122345655 89999999999864
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.2e-40 Score=328.87 Aligned_cols=244 Identities=22% Similarity=0.230 Sum_probs=188.9
Q ss_pred hhcccC-CCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
...+.| +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..|++.|. .+.|+++|+||||+|+|++|+
T Consensus 264 ~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 264 LQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACA 339 (610)
T ss_pred HHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHH
Confidence 345555 799999999999889999999999999999999999999999998883 344556899999999999999
Q ss_pred HcCCeEEEEECCCC---CHHHHHHHHHcCCeEEEeCCC-CChHHHHHHH-HHHHHhCCCcEEcCCC-C--C--hhHHHHH
Q 021775 137 MKGYKMVLTMPSYT---SLERRVTMRAFGADLILTDPA-KGMGGTVKKA-QELLESTPNAFMLQQF-S--N--PANTRVH 206 (307)
Q Consensus 137 ~~G~~~~ivvp~~~---~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~-~--n--p~~~~~G 206 (307)
++|++|+||||+.. ...|+.+|+.|||+|+.++.. .++.++...+ +++..+.++.+|+.++ . + |.++..|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 99999999999764 356888999999999999852 3566775544 4443444466666433 1 2 4555459
Q ss_pred HHHHHHHHHHhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC-------
Q 021775 207 FETTGPEIWEDTM----GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN--------ILNGGKP------- 267 (307)
Q Consensus 207 ~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~------- 267 (307)
|+|+|.||++|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++. ++..+.+
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~ 498 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSM 498 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccce
Confidence 9999999999984 2599999999999999999999975 789999999999862 2333322
Q ss_pred -------------cCcccCccCCCCC-cccc--cccccCcEEEECHHHHHHhccC
Q 021775 268 -------------GPHLITGNGVGFK-PDIL--DMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 -------------~~~~~~gi~~~~~-p~~~--~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..+++.|+..+.+ |..+ .....++++.|+|+|+++|++.
T Consensus 499 ~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~ 553 (610)
T PRK13803 499 TYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKL 553 (610)
T ss_pred eeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 2345566654322 3222 2344567999999999999874
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.1e-40 Score=311.78 Aligned_cols=244 Identities=20% Similarity=0.229 Sum_probs=190.4
Q ss_pred hHhhhcccCCCcccccccccccCCCeEEEEeCCCCCC--CcchhHHHHHHHHHHHHcCCCCCCCcEEE--eeCCChHHHH
Q 021775 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPT--ASIKDRPAVAMLEDAENKNLISPGKTTII--EPTSGNMGIS 130 (307)
Q Consensus 55 ~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~KdR~a~~~l~~a~~~g~~~~g~~~vv--~~SsGN~g~a 130 (307)
++++++.+++|||++++++++..|.+||+|+|++||+ ||||||++.+++.+++++|. ++|+ ++|+||||+|
T Consensus 12 ~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 12 FPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFV 86 (329)
T ss_pred CCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHH
Confidence 3578999999999999999988889999999999997 89999999999999999984 4576 5888999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHH-HHHHHHHcCCeEEEeCCCCC---hHHHHHHHHHHHHhCCCcEE-cCCCCChhHHHH
Q 021775 131 MAFMAAMKGYKMVLTMPSYTSLE-RRVTMRAFGADLILTDPAKG---MGGTVKKAQELLESTPNAFM-LQQFSNPANTRV 205 (307)
Q Consensus 131 lA~~a~~~G~~~~ivvp~~~~~~-k~~~~~~~GA~V~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~np~~~~~ 205 (307)
+|++|+.+|+++++|||...+.. +...++.+||+++.++...+ .+.+.+.+.+++++.+..|+ .+++.||.+.+
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~- 165 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL- 165 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH-
Confidence 99999999999999999865443 66678999999998874322 33566667777766544555 57778999997
Q ss_pred HHHHHHHHHHHhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC-----CcCcccCccCC
Q 021775 206 HFETTGPEIWEDTM---GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGK-----PGPHLITGNGV 277 (307)
Q Consensus 206 G~~t~~~Ei~~q~~---~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~-----~~~~~~~gi~~ 277 (307)
|+.+...||++|++ ..+|+||+|+|||||++|+++++|+.+|++|||||+|.+......+. ...+...|++.
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 245 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKV 245 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66666669999996 36999999999999999999999999999999999997632211111 01223445554
Q ss_pred CC-CcccccccccCcEEEECHHHHHHhccC
Q 021775 278 GF-KPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 278 ~~-~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
+. .|..++. ..|++..++ +|++++++.
T Consensus 246 ~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~ 273 (329)
T PRK14045 246 KVQEPELYDY-SFGEYGKIT-KEVAKLIRS 273 (329)
T ss_pred CccceEeccc-ccCCCCCCC-HHHHHHHHH
Confidence 43 3333333 347877887 688888763
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-28 Score=219.05 Aligned_cols=244 Identities=21% Similarity=0.279 Sum_probs=184.4
Q ss_pred hhcccC-CCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 021775 58 VSQLIG-RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136 (307)
Q Consensus 58 v~~~~g-~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 136 (307)
+..+.| +|||+..++|++.+|.+||+|+|++|.||+||...+...+.-|++.|+ ++.|.+.++|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 444555 599999999999999999999999999999999999999999999996 566777788999999999999
Q ss_pred HcCCeEEEEECCC-C--CHHHHHHHHHcCCeEEEeCC-CCChHHHHHHH-HHHHHhCCCcEEc-----CCCCChhHHHHH
Q 021775 137 MKGYKMVLTMPSY-T--SLERRVTMRAFGADLILTDP-AKGMGGTVKKA-QELLESTPNAFML-----QQFSNPANTRVH 206 (307)
Q Consensus 137 ~~G~~~~ivvp~~-~--~~~k~~~~~~~GA~V~~v~~-~~~~~~~~~~a-~~~~~~~~~~~~~-----~~~~np~~~~~G 206 (307)
++|++|+|||... + ...++..|+.+||+|+.|.. +.+..++...| +.+....+..+|+ .|.--|..+.--
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999863 2 34567889999999999874 44677877776 5566655555663 222234444446
Q ss_pred HHHHHHHHHHhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC-------
Q 021775 207 FETTGPEIWEDT----MGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN--------ILNGGKP------- 267 (307)
Q Consensus 207 ~~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~------- 267 (307)
|+.||.|.-+|+ +.-||+||.++|+|++..|+...|-+- +++++||||+.|-. ++..|++
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 889999977775 345999999999999999998888653 68999999998743 3333332
Q ss_pred -------------cCcccCccCCCCC-ccc--ccccccCcEEEECHHHHHHhccC
Q 021775 268 -------------GPHLITGNGVGFK-PDI--LDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 268 -------------~~~~~~gi~~~~~-p~~--~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
..++..||..+-+ |.. +...--.+.+.|+|+|+++|.++
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~ 338 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQL 338 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHH
Confidence 1233345543222 332 12222345789999999999764
No 81
>PRK09225 threonine synthase; Validated
Probab=99.96 E-value=3.1e-28 Score=235.29 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=176.8
Q ss_pred CCcccccccccccCCCeEEEEeCCCCCCCcchhHHHHH---HHHHHHHcCCCCCCCcEEEeeCCChHHHHH-HHHHHHcC
Q 021775 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVA---MLEDAENKNLISPGKTTIIEPTSGNMGISM-AFMAAMKG 139 (307)
Q Consensus 64 ~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~---~l~~a~~~g~~~~g~~~vv~~SsGN~g~al-A~~a~~~G 139 (307)
.+||.+++. ++|+.--+++||||||||++.. +++++++ +. ..+|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 378877642 6899999999999999999988 8888887 42 4569999999999998 79999999
Q ss_pred CeEEEEECCC-CCHHHHHHHHHc-CCeE--EEeCCCCChHHHHHHHHHHHHh------CCCcEEcCCCCChhHHHHHHHH
Q 021775 140 YKMVLTMPSY-TSLERRVTMRAF-GADL--ILTDPAKGMGGTVKKAQELLES------TPNAFMLQQFSNPANTRVHFET 209 (307)
Q Consensus 140 ~~~~ivvp~~-~~~~k~~~~~~~-GA~V--~~v~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~np~~~~~G~~t 209 (307)
++++|++|++ ++..+..||..+ |++| +.|++ +|+++...++++.++ . +++..|+ .||.+++ ||++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNS-iN~~Ri~-gQ~~ 230 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANS-INIGRLL-AQIV 230 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEec-cCHHHHH-HHHH
Confidence 9999999986 999999999999 9987 56665 599999998887654 3 5677777 4999998 9999
Q ss_pred HHHHHHHhhCC---CCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccc----cCCC-----CcCcccCccC
Q 021775 210 TGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQN-PNVKIYGVEPAESNIL----NGGK-----PGPHLITGNG 276 (307)
Q Consensus 210 ~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVe~~~~~~~----~~~~-----~~~~~~~gi~ 276 (307)
.++|+++|+.+ .||+|+||+|+||++.|.+++ ++++ |-+|+|+++ ...+.+ ..|. ...|++++|.
T Consensus 231 yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amd 308 (462)
T PRK09225 231 YYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMD 308 (462)
T ss_pred HHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhh
Confidence 99999999975 389999999999999999999 5444 667999997 444333 2332 2356677776
Q ss_pred CCCCcccccc---------------------cccC---------------cEEEECHHHHHHhccC
Q 021775 277 VGFKPDILDM---------------------DVME---------------KVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~~~p~~~~~---------------------~~~d---------------~~v~Vsd~e~~~a~~l 306 (307)
++. |.++.+ +... ..+.|+|+|+.++++.
T Consensus 309 I~~-psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~ 373 (462)
T PRK09225 309 ISV-SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIRE 373 (462)
T ss_pred cCC-CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHH
Confidence 653 433322 0111 4689999999999863
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.95 E-value=5.3e-27 Score=226.77 Aligned_cols=224 Identities=17% Similarity=0.104 Sum_probs=174.9
Q ss_pred CcccccccccccCCCeEEEEeCCCCCCCcchhHHHHHH---HHHHHHcCCCCCCCcEEEeeCCChHHHH-HHHHHHHcCC
Q 021775 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAM---LEDAENKNLISPGKTTIIEPTSGNMGIS-MAFMAAMKGY 140 (307)
Q Consensus 65 TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~---l~~a~~~g~~~~g~~~vv~~SsGN~g~a-lA~~a~~~G~ 140 (307)
+||.++.. ++|++..+++||||||||++..+ +++++++. .+...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78777652 68999999999999999999876 67776541 12457999999999999 5899999999
Q ss_pred eEEEEECCC-CCHHHHHHHHHcCC---eEEEeCCCCChHHHHHHHHHHHHhC-----CCcEEcCCCCChhHHHHHHHHHH
Q 021775 141 KMVLTMPSY-TSLERRVTMRAFGA---DLILTDPAKGMGGTVKKAQELLEST-----PNAFMLQQFSNPANTRVHFETTG 211 (307)
Q Consensus 141 ~~~ivvp~~-~~~~k~~~~~~~GA---~V~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~np~~~~~G~~t~~ 211 (307)
+++|++|.+ +++.+..||..+|+ +++.|++ +|+++...++++.++. -+++-.|+ .||.+++ ||++.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHHH
Confidence 999999986 99999999999997 7888887 4999999988876541 15666776 5999997 999999
Q ss_pred HHHHHhhCC----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc-c----cCCC------CcCcccCccC
Q 021775 212 PEIWEDTMG----QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNI-L----NGGK------PGPHLITGNG 276 (307)
Q Consensus 212 ~Ei~~q~~~----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~-~----~~~~------~~~~~~~gi~ 276 (307)
+|+++|+.+ .||+|+||+|+||++.|.+++.+--.|-.|+|+++- ++. + ..|. ...|.+++|.
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n--~n~il~~~~~~G~y~~~~~~~~T~spamd 311 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATN--ENDVLRRFFKTGRYDRRESLKQTLSPAMD 311 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeC--CChHHHHHHHcCCCcCCCCCCCCcCchhh
Confidence 999999964 589999999999999999999664447789999654 443 2 2232 1346667766
Q ss_pred CCCCcccccc------cccC------------------------------cEEEECHHHHHHhcc
Q 021775 277 VGFKPDILDM------DVME------------------------------KVLEVSSIANAQTIT 305 (307)
Q Consensus 277 ~~~~p~~~~~------~~~d------------------------------~~v~Vsd~e~~~a~~ 305 (307)
++. |.++.+ ..-. ..+.|+|+|+.++++
T Consensus 312 I~~-psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~ 375 (460)
T cd01560 312 ILK-SSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIR 375 (460)
T ss_pred cCC-CCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHH
Confidence 653 433321 1111 458999999999986
No 83
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=212.89 Aligned_cols=247 Identities=20% Similarity=0.191 Sum_probs=193.3
Q ss_pred hhHhhhcccCCCcccccccccccCCCeEEEEeCCCCCC--CcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCC--ChHHH
Q 021775 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPT--ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS--GNMGI 129 (307)
Q Consensus 54 ~~~~v~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~Ss--GN~g~ 129 (307)
.++|+....++||+.+++++++.+|.+||+|+|++.+- |.+|.|...+++.+|.++| .+++|+.++ +||.+
T Consensus 5 rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g-----~dTlvT~GgiQSNh~r 79 (323)
T COG2515 5 RFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKG-----ADTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcC-----CcEEEEecccchhHHH
Confidence 34577888899999999999999999999999999654 9999999999999999998 678999998 99999
Q ss_pred HHHHHHHHcCCeEEEEECCCC----CHHHHHHHHHcCCeEEEeCCCCCh--HHHHHHHHHHHHhCCCcEE-c-CCCCChh
Q 021775 130 SMAFMAAMKGYKMVLTMPSYT----SLERRVTMRAFGADLILTDPAKGM--GGTVKKAQELLESTPNAFM-L-QQFSNPA 201 (307)
Q Consensus 130 alA~~a~~~G~~~~ivvp~~~----~~~k~~~~~~~GA~V~~v~~~~~~--~~~~~~a~~~~~~~~~~~~-~-~~~~np~ 201 (307)
++|++|+++|++|+.++.... -..++...+.+|+++..++...++ +...+...+..++.++..| + .+..||.
T Consensus 80 ~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~ 159 (323)
T COG2515 80 QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPL 159 (323)
T ss_pred HHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcc
Confidence 999999999999999997643 123667778899999999876555 3333334333333334433 3 3335776
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC---cCcccCccC
Q 021775 202 NTRVHFETTGPEIWEDTM--GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKP---GPHLITGNG 276 (307)
Q Consensus 202 ~~~~G~~t~~~Ei~~q~~--~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gi~ 276 (307)
-.. ||...+.||.+|.. -++|+||+++|||||.+|+..++...+++.+|||+.....+.....+. ..+.++.++
T Consensus 160 g~l-Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~ 238 (323)
T COG2515 160 GAL-GYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLG 238 (323)
T ss_pred ccc-cHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcC
Confidence 654 99999999999986 469999999999999999999999999999999999988765332211 334444444
Q ss_pred CC-CCcccccccccCcEEEECHHHHHHhccC
Q 021775 277 VG-FKPDILDMDVMEKVLEVSSIANAQTITL 306 (307)
Q Consensus 277 ~~-~~p~~~~~~~~d~~v~Vsd~e~~~a~~l 306 (307)
.+ ...+.+..++....+.++.+|.++++++
T Consensus 239 ~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~ 269 (323)
T COG2515 239 LGSEADVLLSDDYHHPGYGKPNEEDIEAIKL 269 (323)
T ss_pred CCCCceEEEEecccCCccCCcCHHHHHHHHH
Confidence 43 2234556677777788888998888764
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.94 E-value=3.6e-26 Score=205.23 Aligned_cols=262 Identities=19% Similarity=0.210 Sum_probs=192.0
Q ss_pred HhhhcCCCCCCCCccchhHhhhccc-CCCcccccccccccCC--CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCC
Q 021775 38 FAQRLRDLPKDLPATNIKRDVSQLI-GRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISP 114 (307)
Q Consensus 38 ~~~~~~~~~~~lp~~~~~~~v~~~~-g~TPl~~~~~l~~~~g--~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~ 114 (307)
+.+++.+.-+|+.+......+...+ .+|||++..+|.+.+| .+||+|.|+..||||||...|....-.++..|.
T Consensus 51 lieqE~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~--- 127 (432)
T COG1350 51 LIEQEFSGERYIKIPEEVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA--- 127 (432)
T ss_pred HHHHHhhhhhcccCcHHHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc---
Confidence 3334445557877766655666666 5899999999999887 499999999999999999999999999999995
Q ss_pred CCcEEEe-eCCChHHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHHcCCeEEEeCCCC----------------Ch
Q 021775 115 GKTTIIE-PTSGNMGISMAFMAAMKGYKMVLTMPSY---TSLERRVTMRAFGADLILTDPAK----------------GM 174 (307)
Q Consensus 115 g~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~---~~~~k~~~~~~~GA~V~~v~~~~----------------~~ 174 (307)
..|++ .++|.+|.|++.+|+.+|++|+|||-.. ..+.+..+|+.|||+|+..+.+. +.
T Consensus 128 --~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSL 205 (432)
T COG1350 128 --KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSL 205 (432)
T ss_pred --eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchh
Confidence 34554 4559999999999999999999999863 46778899999999999876532 12
Q ss_pred HHHHHHHHHHHHhCCC-cEEcCCCCChhHHHHHHHHHHHHHHHhh---CCCCCEEEEecCchhHHHHHHHHHHhc--C--
Q 021775 175 GGTVKKAQELLESTPN-AFMLQQFSNPANTRVHFETTGPEIWEDT---MGQVDIFVMGIGSGGTVSGVGQYLKSQ--N-- 246 (307)
Q Consensus 175 ~~~~~~a~~~~~~~~~-~~~~~~~~np~~~~~G~~t~~~Ei~~q~---~~~~d~vv~pvG~Gg~~~Gi~~~~k~~--~-- 246 (307)
.=++..|.+.+-++++ .|.+.+.-| ..+. ||..+|+|.-+|+ +..||++|-++|+|++++|+.--|-.. .
T Consensus 206 GIAISEAiE~al~~~~~kY~lGSVln-hvll-hQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~ 283 (432)
T COG1350 206 GIAISEAIEYALKNENTKYSLGSVLN-HVLL-HQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGK 283 (432)
T ss_pred HHHHHHHHHHHHhCCCceecchhHHH-HHHH-HHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCC
Confidence 2345566666655543 444444434 3343 9999999996555 456999999999999999998766432 2
Q ss_pred CCcEEEEEeCCCCccccCCCCcCc-----------ccCccCCCCCcccc-----------------cccccCcEEEECHH
Q 021775 247 PNVKIYGVEPAESNILNGGKPGPH-----------LITGNGVGFKPDIL-----------------DMDVMEKVLEVSSI 298 (307)
Q Consensus 247 ~~~~vigVe~~~~~~~~~~~~~~~-----------~~~gi~~~~~p~~~-----------------~~~~~d~~v~Vsd~ 298 (307)
...++|+|+|+.++.+..|...-+ .+-.||.+++|+.+ .+.-+-+.+..+.+
T Consensus 284 ~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~ 363 (432)
T COG1350 284 KETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQE 363 (432)
T ss_pred ceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChH
Confidence 238999999999999887643100 11234444433322 12335567888999
Q ss_pred HHHHhccC
Q 021775 299 ANAQTITL 306 (307)
Q Consensus 299 e~~~a~~l 306 (307)
|+++|.++
T Consensus 364 Evfeaa~l 371 (432)
T COG1350 364 EVFEAAVL 371 (432)
T ss_pred HHHHHHHH
Confidence 99998753
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=190.71 Aligned_cols=243 Identities=21% Similarity=0.256 Sum_probs=168.7
Q ss_pred hhccc-CCCcccccccccccC--CCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 021775 58 VSQLI-GRTPLVFLNKVSEGC--GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFM 134 (307)
Q Consensus 58 v~~~~-g~TPl~~~~~l~~~~--g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 134 (307)
+..++ .+|||++.+||.+.+ |.+||+|+|++|||||+|...+...+..|++.|+ ++.|.+.++|.||.|+|.+
T Consensus 115 iy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a 190 (477)
T KOG1395|consen 115 IYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATA 190 (477)
T ss_pred HHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHH
Confidence 34344 469999999998876 5699999999999999999999999999999996 5656677779999999999
Q ss_pred HHHcCCeEEEEECCC---CCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHH-HHhCCCcEE-cC----CCCChhHHH
Q 021775 135 AAMKGYKMVLTMPSY---TSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQEL-LESTPNAFM-LQ----QFSNPANTR 204 (307)
Q Consensus 135 a~~~G~~~~ivvp~~---~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~-~~~~~~~~~-~~----~~~np~~~~ 204 (307)
|+++|++|+|+|-.+ ..+-++.+|+.+||+|+.+... ....++-..+.++ ....+-.+| +. ++--|..+.
T Consensus 191 ~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr 270 (477)
T KOG1395|consen 191 CAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVR 270 (477)
T ss_pred HHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHH
Confidence 999999999999864 3566888999999999998742 2334433333222 111111223 22 111232222
Q ss_pred HHHHHHHHHHHHhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCC-----
Q 021775 205 VHFETTGPEIWEDT----MGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNI--------LNGGKP----- 267 (307)
Q Consensus 205 ~G~~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~--------~~~~~~----- 267 (307)
.-+.+|+-|--.|. +..||.||.++|+|++.+|+..-|..-. .+++|||+..+... +..+..
T Consensus 271 ~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk-~v~~igveaagdg~dtp~hsatltagd~Gv~hG 349 (477)
T KOG1395|consen 271 TFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDK-SVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHG 349 (477)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccc-hhheeeeeecccccCCcchhceeeccccccccc
Confidence 34568888876554 3459999999999999999999887543 57889999877542 222221
Q ss_pred ---------------cCcccCccCCCCC-ccc--ccccccCcEEEECHHHHHHhcc
Q 021775 268 ---------------GPHLITGNGVGFK-PDI--LDMDVMEKVLEVSSIANAQTIT 305 (307)
Q Consensus 268 ---------------~~~~~~gi~~~~~-p~~--~~~~~~d~~v~Vsd~e~~~a~~ 305 (307)
...+-.||...-+ |.. +...-..+++.|+|.|++++.+
T Consensus 350 ~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk 405 (477)
T KOG1395|consen 350 VTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFK 405 (477)
T ss_pred ceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHH
Confidence 1122234433222 221 1223346789999999998865
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.81 E-value=6.2e-19 Score=157.53 Aligned_cols=244 Identities=19% Similarity=0.264 Sum_probs=196.2
Q ss_pred hhcccCCCcccccccccc----c----CCCeEEEEeCCCCCC-CcchhHHHHHHHH-H----HHHcCCCCCC--------
Q 021775 58 VSQLIGRTPLVFLNKVSE----G----CGAYIAVKQEMFQPT-ASIKDRPAVAMLE-D----AENKNLISPG-------- 115 (307)
Q Consensus 58 v~~~~g~TPl~~~~~l~~----~----~g~~l~~K~E~~npt-GS~KdR~a~~~l~-~----a~~~g~~~~g-------- 115 (307)
-+.++-.+||++.+..-+ + +..++|+|.+++-|- ||+|.||..+-+. + |.+.|.+...
T Consensus 72 ~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~ 151 (443)
T COG3048 72 ATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLS 151 (443)
T ss_pred ccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhc
Confidence 355677899998765432 2 234899999999985 9999999888664 3 5567765321
Q ss_pred --------CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh
Q 021775 116 --------KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 --------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
.-.|.+.|+||.|.|+...++.+|++++|-|...+...|...+|+.|.+|+.... +|..+.+.-++.++.
T Consensus 152 ~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~ 229 (443)
T COG3048 152 EEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAES 229 (443)
T ss_pred HHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhcc
Confidence 1248899999999999999999999999999999999999999999999999886 489999999999999
Q ss_pred CCCcEEcCCCCChhHHHHHHHHHHHHHHHhhC--------CCCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCC
Q 021775 188 TPNAFMLQQFSNPANTRVHFETTGPEIWEDTM--------GQVDIFVMGIGSGGTVSGVGQYLKSQN-PNVKIYGVEPAE 258 (307)
Q Consensus 188 ~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~--------~~~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVe~~~ 258 (307)
.|..||++.-++-... .||...+..+-.|++ ..|-.|..|+|-||.-.|++.++|... .++.++=+||..
T Consensus 230 DP~c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPth 308 (443)
T COG3048 230 DPNCFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTH 308 (443)
T ss_pred CCceEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCC
Confidence 9999999875444444 499999999988884 247789999999999999999999765 679999999999
Q ss_pred CccccC----C-----------CCcCcccCccCCCCCcccc---cccccCcEEEECHHHHHHhc
Q 021775 259 SNILNG----G-----------KPGPHLITGNGVGFKPDIL---DMDVMEKVLEVSSIANAQTI 304 (307)
Q Consensus 259 ~~~~~~----~-----------~~~~~~~~gi~~~~~p~~~---~~~~~d~~v~Vsd~e~~~a~ 304 (307)
+|++.- | -...|.++|++++.....+ -...+|..++|+|+...+.+
T Consensus 309 sPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL 372 (443)
T COG3048 309 SPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLL 372 (443)
T ss_pred ChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHH
Confidence 997531 1 1245778999998644333 24678999999999887654
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=90.85 E-value=1.5 Score=37.03 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCeEE-EEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 127 MGISMAFMAAMKGYKMV-LTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 127 ~g~alA~~a~~~G~~~~-ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
-|..+.++++.+|.++. -+.+.+.-..-+..+...|-.|.++++. .....+.+..+.++.|+.-.+..+.-+.+.+
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~- 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE- 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-
Confidence 36788999999998873 2222233344566667788899999875 3445556677777777765554332222221
Q ss_pred HHHHHHHHHHHhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 021775 206 HFETTGPEIWEDTM-GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254 (307)
Q Consensus 206 G~~t~~~Ei~~q~~-~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 254 (307)
- -.+|+++++ ..||.|+++.|+---=.= ....+..-+..-+++|
T Consensus 89 ~----~~~i~~~I~~~~pdiv~vglG~PkQE~~-~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 89 E----EEAIINRINASGPDIVFVGLGAPKQERW-IARHRQRLPAGVIIGV 133 (172)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEE
Confidence 1 223444443 359999999998654322 2223333344445555
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.67 E-value=7.1 Score=34.03 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFS 198 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (307)
+|...+|+.|..++.+....+.++++++.+. +......++..|++++..+ +++.......+ +.-+..+...+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d----~~~~~~l~~al-~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD----YDDPESLVAAL-KGVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-----TT-HHHHHHHH-TTCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc----cCCHHHHHHHH-cCCceEEeecCcc
Confidence 5677789999999999999999999999864 4556777888999998665 33333332222 2222344444444
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCCCEEE
Q 021775 199 NPANTRVHFETTGPEIWEDTMGQVDIFV 226 (307)
Q Consensus 199 np~~~~~G~~t~~~Ei~~q~~~~~d~vv 226 (307)
++...+ .+..+ .+...+.+ +.++|
T Consensus 76 ~~~~~~-~~~~l-i~Aa~~ag--Vk~~v 99 (233)
T PF05368_consen 76 HPSELE-QQKNL-IDAAKAAG--VKHFV 99 (233)
T ss_dssp CCCHHH-HHHHH-HHHHHHHT---SEEE
T ss_pred hhhhhh-hhhhH-HHhhhccc--cceEE
Confidence 344444 33343 34445542 66665
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=88.81 E-value=2.5 Score=35.73 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHH
Q 021775 128 GISMAFMAAMKGYKMVLTMPSY-TSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH 206 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G 206 (307)
|..+.++++.+|.+..--++.. .-..-++.+...+.+|.++++. .+...+.+..+.++.|+...+..++.+...+ .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 5788999999999832223321 1233455556668999999874 3334444556777777766553332222222 1
Q ss_pred HHHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 021775 207 FETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254 (307)
Q Consensus 207 ~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 254 (307)
-.+|+++++. .||.|+++.|+---=.= ....++..+..-+++|
T Consensus 88 ----~~~i~~~I~~~~pdiv~vglG~PkQE~~-~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 ----EEEIIERINASGADILFVGLGAPKQELW-IARHKDRLPVPVAIGV 131 (171)
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEe
Confidence 1125555542 59999999998654322 2233444455556666
No 90
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.75 E-value=16 Score=34.12 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=42.3
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
..+..+.+|.+ |+..++|..|.+++.+|+..|.++++ +. .++.|+..++.+|++.++.
T Consensus 159 ~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~-~~--~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVA-ID--IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEE-Ec--CCHHHHHHHHHhCCceEec
Confidence 33455677776 66666699999999999999997444 32 3567888889999976543
No 91
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.28 E-value=4.4 Score=37.93 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+|.+ |+..++|..|...+.+++..|.+++++.....++.|++.++.+||+.+
T Consensus 171 ~~g~~-vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRR-ALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 45566 555578999999999999999986666554446789999999999864
No 92
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.21 E-value=6 Score=30.94 Aligned_cols=89 Identities=27% Similarity=0.292 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHH
Q 021775 128 GISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF 207 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~ 207 (307)
|...+..|+.+|.+++++.+ ++.|++.++.+||+.+....+. .
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~-----------------~----------------- 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDD-----------------D----------------- 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTS-----------------S-----------------
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhccccccccccc-----------------c-----------------
Confidence 56667777888855555543 4667788888887665544320 0
Q ss_pred HHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 021775 208 ETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAE 258 (307)
Q Consensus 208 ~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~ 258 (307)
...+|.+..++ .+|.||-++|++.++.- +++-+.+.=+++-+-..+
T Consensus 46 --~~~~i~~~~~~~~~d~vid~~g~~~~~~~---~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 46 --FVEQIRELTGGRGVDVVIDCVGSGDTLQE---AIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --HHHHHHHHTTTSSEEEEEESSSSHHHHHH---HHHHEEEEEEEEEESSTS
T ss_pred --cccccccccccccceEEEEecCcHHHHHH---HHHHhccCCEEEEEEccC
Confidence 22233333333 58999999998776644 444444555666554443
No 93
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.02 E-value=7.2 Score=36.49 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=45.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.+.+++|.+.+|...+|.-|..+...|+.+|...++.+. +..|...++.+||+.+..
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 3566788888888888999999999999999984444443 446677999999977655
No 94
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.08 E-value=1.8 Score=40.87 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=53.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChH-HHHHHHHHHHHhCCCcEE
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMG-GTVKKAQELLESTPNAFM 193 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~-~~~~~a~~~~~~~~~~~~ 193 (307)
..+++..+||..|..+|..+..++-.-.|++|.-+...-...+...|++++++|-+ .++. +.....+.+.++..-...
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~ 119 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILV 119 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEE
Confidence 34699999999999999998444434788889888888899999999999999854 2222 111122222233222344
Q ss_pred cCCCCChhHHH
Q 021775 194 LQQFSNPANTR 204 (307)
Q Consensus 194 ~~~~~np~~~~ 204 (307)
++.+.+|..++
T Consensus 120 ~h~~G~~~d~~ 130 (363)
T PF01041_consen 120 VHLFGNPADMD 130 (363)
T ss_dssp E-GGGB---HH
T ss_pred ecCCCCcccHH
Confidence 56666666554
No 95
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.76 E-value=13 Score=33.99 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
+.+.+.+|.+.+|...+|..|.++...|+.+|.+++++. .+..|...++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 445567777755666679999999999999999865554 34578888899999655443
No 96
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.32 E-value=6.5 Score=35.50 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=40.3
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
..+|.+ |+...+|..|..++..|+.+|.+.++++ ..++.|++.++.+|++.+.
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346666 5666789999999999999999855555 3466788899999996543
No 97
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.16 E-value=26 Score=32.87 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=83.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCC
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTP 189 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~ 189 (307)
.+++||.+ ++..+-|.-|.|++.-|+..|-.=+|=+. ..+.|.+..+.+||+=
T Consensus 188 Akv~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe------------------------ 240 (375)
T KOG0022|consen 188 AKVEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATE------------------------ 240 (375)
T ss_pred cccCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCcce------------------------
Confidence 34556655 99999999999999999999987777666 5778888888888832
Q ss_pred CcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 021775 190 NAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260 (307)
Q Consensus 190 ~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~ 260 (307)
++ ||.... +.+-.-|.|..++.+|+-|=++|+=.++.-....-+.-+-..-++||.+.+..
T Consensus 241 ---~i----Np~d~~---~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 241 ---FI----NPKDLK---KPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ---ec----Chhhcc---ccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 22 332111 12222244445567999999999988887776666766677889999998875
No 98
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.98 E-value=13 Score=32.26 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-HcCCeEE
Q 021775 96 DRPAVAMLEDAENK--NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR-AFGADLI 166 (307)
Q Consensus 96 dR~a~~~l~~a~~~--g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~-~~GA~V~ 166 (307)
-+|..+.+..+.+. +......++++..+.||.|..+|......|.+++++ .. ...++..+. .+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~--~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-DI--NEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-cC--CHHHHHHHHHHcCCEEE
Confidence 36777777776655 222222345899999999999999999999988743 32 344444443 4476543
No 99
>PRK12743 oxidoreductase; Provisional
Probab=83.82 E-value=13 Score=32.77 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=36.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+.++|.-|.++|......|.+++++...+.. ......++.+|.++..+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE
Confidence 456788888999999999999999988776543222 122345556676665543
No 100
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=83.29 E-value=6.8 Score=36.35 Aligned_cols=62 Identities=21% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHcCCCCCCCcEEEeeCC---ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEEeCC
Q 021775 107 ENKNLISPGKTTIIEPTS---GNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~Ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~~ 170 (307)
+..|.++ |.+ |+..+- +|.+.|++..++++|++++++.|++. +...+..++..|+++...+.
T Consensus 143 e~~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 143 EEFGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred HHhCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 3445443 344 666666 59999999999999999999999864 55556677778999877653
No 101
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.23 E-value=16 Score=34.95 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=42.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+...+.+|.+ |+...+|..|..++..|+.+|.+.+++.. ....|+...+.+||+.
T Consensus 179 ~~~~~~~g~~-VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 179 VTAGVGPGST-VYIAGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 3355667776 55578899999999999999998766443 3467899999999974
No 102
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.86 E-value=28 Score=35.71 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=42.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.+|+.++.|..|+.+|..-...|++++++= .++.+.+.++.+|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLD---HDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhcCCeEEEEeC
Confidence 359999999999999999999999987763 356678888888888776665
No 103
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.75 E-value=2.9 Score=34.60 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=33.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFG 162 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~G 162 (307)
|...++||+|.++|...+..|.+++++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 7888999999999999999999999998753 4555554433
No 104
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.67 E-value=39 Score=33.81 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=42.1
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.++. +|+..+.|..|.+.+..|+.+|-.+++ +. ..+.++++.+.+||+.+.++
T Consensus 163 ~pg~-kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~D--~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 163 VPPA-KVLVIGAGVAGLAAIGAAGSLGAIVRA-FD--TRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred cCCC-EEEEECCcHHHHHHHHHHHHCCCEEEE-Ee--CCHHHHHHHHHcCCeEEEec
Confidence 3444 499999999999999999999985333 33 56789999999999976554
No 105
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=81.48 E-value=47 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCCCCCC-CcEEEeeCCChHHHH--HHHHHHHcCCeEEEEE
Q 021775 87 MFQPTASIKDRPAVAMLEDAENKNLISPG-KTTIIEPTSGNMGIS--MAFMAAMKGYKMVLTM 146 (307)
Q Consensus 87 ~~nptGS~KdR~a~~~l~~a~~~g~~~~g-~~~vv~~SsGN~g~a--lA~~a~~~G~~~~ivv 146 (307)
+-+|.|.-+ .....+...+.+|.+..| ++.+|+..++..|.| +|.+. ..|..++++-
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 456777643 345667777888877444 444555555656666 44455 5677766654
No 106
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=81.41 E-value=35 Score=33.82 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCeEEEeCCCC---Ch-HHHHHHHHHHHHhCCCcE--
Q 021775 130 SMAFMAAMKGYKMVLTM-----------PSYTSLERRVTMRAFGADLILTDPAK---GM-GGTVKKAQELLESTPNAF-- 192 (307)
Q Consensus 130 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~~~~~GA~V~~v~~~~---~~-~~~~~~a~~~~~~~~~~~-- 192 (307)
.+..+|+..|+++++.. |..+....+......|++.+....+. .| .++.+...+++++....+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34677889999988765 33345667777888899988876542 22 245555444443321111
Q ss_pred ---EcCCCC-C---hhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 193 ---MLQQFS-N---PANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 193 ---~~~~~~-n---p~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
|-.... . ....+ .....+.++.+.+ +.++||+..-||.++--+++ +.|.+.|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 100000 0 01122 3334455666776 47899999999999766555 479999999998654
No 107
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.73 E-value=51 Score=31.03 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=42.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-cCCeEEEeC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRA-FGADLILTD 169 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~-~GA~V~~v~ 169 (307)
+|+..++|.-|...+..++.+|...+|++. .++.|++..+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecC
Confidence 599999999999999999999999999884 57788998877 667665544
No 108
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.64 E-value=11 Score=35.64 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=47.4
Q ss_pred HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 106 a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
+..+..++||.+ |...+.|-.|.....+|+.+|.+++.|- .+..|++..+.+||+.+...
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINS 217 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEc
Confidence 444455778776 8888888888888889999998777775 46789999999999887664
No 109
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.89 E-value=21 Score=33.61 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=41.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+++|.+.+| ..+|..|..++..|+..|.+.++++. .++.|++.++.+||+.++
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 4455677776444 56799999999999999995444443 356788888999996543
No 110
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.84 E-value=24 Score=32.31 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=43.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.+.+.+|.+.+|...+|-.|.+++..|+..|.+++++.. +..|...++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566777777555555799999999999999998665543 456888889999965543
No 111
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.75 E-value=27 Score=32.25 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=42.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-cCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRA-FGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~-~GA~V~~ 167 (307)
+.+.+++|.+.+|...+|..|.+++.+|+.+|.++++... +..|.+.++. +|++-++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 4456778887666666799999999999999998555443 4578888887 9986443
No 112
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=79.42 E-value=16 Score=31.05 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHH
Q 021775 128 GISMAFMAAMKGYKMVLTMPS-YTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH 206 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~-~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G 206 (307)
|..+.++++.+|.+..--++. +.-..-++.....|..|.++++. -....+.++.+.++.|+.-.+.. +.+...+ -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH-H
Confidence 467889999998764222221 11123344455678899999874 33445556677777776554422 2222221 1
Q ss_pred HHHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 021775 207 FETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254 (307)
Q Consensus 207 ~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 254 (307)
-.+|+++++. .||.++|+.|+--==.=+.+ .+...+..-++||
T Consensus 89 ----~~~i~~~I~~s~~dil~VglG~PkQE~~~~~-~~~~~~~~v~~gv 132 (177)
T TIGR00696 89 ----RKAALAKIARSGAGIVFVGLGCPKQEIWMRN-HRHLKPDAVMIGV 132 (177)
T ss_pred ----HHHHHHHHHHcCCCEEEEEcCCcHhHHHHHH-hHHhCCCcEEEEe
Confidence 1245555542 49999999997432111122 2333344556665
No 113
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.35 E-value=43 Score=33.70 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=39.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.+++..+.|+.|+.+|..-+..|++++++-. ++++.+.++.+|.+++.-|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD 467 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGN 467 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcC
Confidence 4699999999999999999999999877654 3566777777777665554
No 114
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.09 E-value=46 Score=33.93 Aligned_cols=96 Identities=11% Similarity=0.185 Sum_probs=63.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
.+|+.++.|..|+.+|..-...|++++++=. ++.+.+.++.+|..++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 3599999999999999999999999877643 356777777787766554432
Q ss_pred CCChhHHHHHHHHHHHHHHHhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 021775 197 FSNPANTRVHFETTGPEIWEDTM-GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~-~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 254 (307)
++ |++++.+ .+.|.+|+..+.=....-+....|+.+|+.+|++-
T Consensus 453 --~~------------~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 453 --QL------------ELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred --CH------------HHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 11 2222221 23566666666655555555666666677666653
No 115
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.65 E-value=23 Score=33.13 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.+.+.+|.+.+|. ++|-.|.+++..|+..|.+.++.+. .+..|++.++.+|++.++
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345566777775554 6799999999999999987555543 356788888999996443
No 116
>PRK14030 glutamate dehydrogenase; Provisional
Probab=78.62 E-value=14 Score=36.29 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHH-HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 95 KDRPAVAMLEDAE-NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 95 KdR~a~~~l~~a~-~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
=-||..+.+..+. +.|. ....++|+..+.||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~-~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGI-DIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCC-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3467777776654 4443 44345699999999999999999999999988543
No 117
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.13 E-value=57 Score=30.13 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+...+.+|.+.+|. .+|..|.+++..|+..|...++.+.. +..+....+.+|++.+
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 344556777764554 67999999999999999975555543 3567788888998543
No 118
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.08 E-value=22 Score=33.38 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=52.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 105 DAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 105 ~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
+|-+++.+++|.+ |+..++|--|...-..|+.+|-+=+|++. ..+.|++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeec
Confidence 5667777888876 99999999999999999999998887776 56788999999999987544
No 119
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.02 E-value=22 Score=32.97 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
..+|.+ |+..++|..|.+.+..++.+|.+.++++. .++.|++.++.+||+.++
T Consensus 167 ~~~g~~-VlV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKR-VFVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 345666 55556799999999999999986555444 346788899999997654
No 120
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=78.00 E-value=5.4 Score=33.75 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=72.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+.|+-|+++|..++.+|++++.+-|...+.. .....|.+. .+ +++. .++. ....+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~el-------l~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LDEL-------LAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HHHH-------HHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hhhh-------cchh-hhhhhhh
Confidence 3589999999999999999999999999887633222 334455522 21 3332 2332 3444332
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHhcCCCcEEEEEeC
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKSQNPNVKIYGVEP 256 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~~~~~~~vigVe~ 256 (307)
-.++.+ ...+..|.++++ +++.+++-+|-|..+ ..+..++++- ...=.+.+.
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~g--~i~ga~lDV 153 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALESG--KIAGAALDV 153 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHTT--SEEEEEESS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhhc--cCceEEEEC
Confidence 234432 235677889998 478999999999986 5666777652 334344444
No 121
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.96 E-value=13 Score=34.55 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+...+++|.+ |+....|..|.+++..|+..|.+++++.. ++.|++.++.+||+.+.
T Consensus 158 ~~~~~~~~g~~-VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGR-LGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCE-EEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 34456777776 55555688999999999999997544432 46688999999997654
No 122
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=77.91 E-value=1 Score=30.95 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.1
Q ss_pred ChhHHHHHhhccc------C-CCCCceeeecc
Q 021775 1 MAAALRSFLKKRA------L-TCSEPMLMRRL 25 (307)
Q Consensus 1 ~~~~~~~~~~~~~------c-~Cg~~l~~~y~ 25 (307)
|.+.+++|.+||. | .||+...+.+.
T Consensus 1 M~~~~rkC~~cg~YTLke~Cp~CG~~t~~~~P 32 (59)
T COG2260 1 MKSLIRKCPKCGRYTLKEKCPVCGGDTKVPHP 32 (59)
T ss_pred CcchhhcCcCCCceeecccCCCCCCccccCCC
Confidence 7888999999995 9 99999877543
No 123
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.73 E-value=33 Score=31.74 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=43.1
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+.+|.+ |+...+|..|.+++..|+.+|...++++.. ++.|...++.+|++.++
T Consensus 168 ~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDV-VVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4556677766 555777999999999999999887666654 45777888889986543
No 124
>PRK08643 acetoin reductase; Validated
Probab=77.52 E-value=38 Score=29.59 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
++.+|+.++|.-|.++|......|.+++++..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888899999999999999998766643
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.23 E-value=22 Score=25.43 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=38.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-----CH----HHHHHHHHcCCeEEE
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-----SL----ERRVTMRAFGADLIL 167 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----~~----~k~~~~~~~GA~V~~ 167 (307)
|+.-++|..|.-+|.+.+.+|.+++++..... ++ .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 78889999999999999999999999987532 12 124456777887765
No 126
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.15 E-value=34 Score=29.90 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=33.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEe
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILT 168 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v 168 (307)
++.+|+..+|.-|.++|..-...|.+++++....... .-...++.+|.++..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVAL 60 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 4567787889999999999999999876664321111 1123344456555444
No 127
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.07 E-value=35 Score=31.59 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=40.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+.+|.+.+|. .+|..|.+++..|+.+|.+.++++. .+..|...++.+|++.++
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 44556677764444 5799999999999999995444443 356677787888986544
No 128
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=76.79 E-value=36 Score=31.78 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=42.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-HcCCeEEEe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR-AFGADLILT 168 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~-~~GA~V~~v 168 (307)
+.+.+++|.+.+|...+|..|..+...|+.+|.+++++. .+..|...++ .+|++.++-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345677887755666669999999999999999855443 3456777776 799975543
No 129
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.53 E-value=41 Score=30.88 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=39.7
Q ss_pred HcCCCCCC--CcEEEeeCCChHHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHH-cCCeEEEeC
Q 021775 108 NKNLISPG--KTTIIEPTSGNMGISMAFMAAMKGY-KMVLTMPSYTSLERRVTMRA-FGADLILTD 169 (307)
Q Consensus 108 ~~g~~~~g--~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~k~~~~~~-~GA~V~~v~ 169 (307)
+.+.+.+| .+.+|...+|..|.++...|+.+|. +++++.. +..|...++. +|++-++..
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 34445555 5544555569999999999999998 5555543 4567777765 999655443
No 130
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.45 E-value=28 Score=31.98 Aligned_cols=57 Identities=21% Similarity=0.422 Sum_probs=41.8
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.+.+.+|.+.+|...+|..|.+++.+|+.+|.+++++... . +...++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 345567777775665666999999999999999996655432 2 67777889997443
No 131
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.19 E-value=35 Score=29.79 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=41.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeCC-CCChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTDP-AKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~~-~~~~~~~~~~a~~~~~~ 187 (307)
+..+|+..++.-|.++|...+..|.+++++-...... ...+.++..|.+++.+.- ..+.++..+...+..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 4557777788899999999999999876653321111 123345556766654321 12333333344444444
No 132
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=75.18 E-value=43 Score=32.24 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=69.5
Q ss_pred EeeCCC-hHHHHHHHHHHHcCCeEEEEECC-CCC----HHHHHHHHHcCC-eEEEeCCCCChHHHHHHHHHHHHh---CC
Q 021775 120 IEPTSG-NMGISMAFMAAMKGYKMVLTMPS-YTS----LERRVTMRAFGA-DLILTDPAKGMGGTVKKAQELLES---TP 189 (307)
Q Consensus 120 v~~SsG-N~g~alA~~a~~~G~~~~ivvp~-~~~----~~k~~~~~~~GA-~V~~v~~~~~~~~~~~~a~~~~~~---~~ 189 (307)
+..|+| .+...+.+...+.+++++.|.-+ +.+ ..-.+....+|| +++.+|....|- .+.+....+. +.
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~anA~Ye 79 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKANALYE 79 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHTT--BT
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHHHHHhC
Confidence 445555 45666667777677898888743 222 233445678999 999988531111 1222222222 12
Q ss_pred CcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEE-ecCchhHHHHHHHHHHhcCCCcEEEE
Q 021775 190 NAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVM-GIGSGGTVSGVGQYLKSQNPNVKIYG 253 (307)
Q Consensus 190 ~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~-pvG~Gg~~~Gi~~~~k~~~~~~~vig 253 (307)
|.|++. ....++. ......|++++. ..++|.- +.|.|--..=+-.+++.+.|+.+|++
T Consensus 80 g~YpL~--tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 80 GRYPLS--TSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TTB--C--CCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CCcccc--ccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 334432 2233443 233455788886 3688887 45788888888889999999999884
No 133
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=75.16 E-value=33 Score=27.21 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHH-HHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHH
Q 021775 131 MAFMAAMKGYKMVLTMPSYTSLERRVT-MRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFET 209 (307)
Q Consensus 131 lA~~a~~~G~~~~ivvp~~~~~~k~~~-~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t 209 (307)
|+...+..+.+..|+............ ....+.+++.-.+ .++.+++..|.+.+.+.-....+-..+-|.... .+
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~-- 77 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DD-- 77 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HH--
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HH--
Confidence 455666778888888865443333333 5556666665543 378899998877774332445555557776543 22
Q ss_pred HHHHHHHhhCCCCCEEEEecCchhH
Q 021775 210 TGPEIWEDTMGQVDIFVMGIGSGGT 234 (307)
Q Consensus 210 ~~~Ei~~q~~~~~d~vv~pvG~Gg~ 234 (307)
-.+.++.+ ...|.|+.|+.-||-
T Consensus 78 -l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 78 -LEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp -HHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred -HHHHHHHh-ccCCEEEeeccCCCE
Confidence 22445555 345999999998874
No 134
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.95 E-value=37 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=26.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.+.+|+..+|.-|.++|...+..|.+++++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 345788888999999999999999987776543
No 135
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.71 E-value=42 Score=33.58 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=41.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.+++..+.|..|++.+..++.+|..++++- ....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEeccc
Confidence 348888999999999999999998755543 345588889999999887763
No 136
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=74.60 E-value=21 Score=35.11 Aligned_cols=52 Identities=17% Similarity=0.017 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 96 DRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 96 dR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-+|..+.+..+.+.-......++|+..+.||-|..+|.....+|.+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577777776654322222234599999999999999999999998886654
No 137
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.47 E-value=13 Score=36.17 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=41.5
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+...+|.+ |+..+.|.-|..+|..++.+|.+++++ . .++.|....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV~-d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIVT-E--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEE-E--CChhhHHHHHhcCCEEc
Confidence 44455654 999999999999999999999975553 2 35667888888999764
No 138
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=73.64 E-value=27 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=49.0
Q ss_pred HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-cCCeEEEe
Q 021775 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRA-FGADLILT 168 (307)
Q Consensus 106 a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~-~GA~V~~v 168 (307)
.++-|..++|.+.+|++.+|-.|.-+-..|+..|.+++-+.. .++|...+.. +|-+..+-
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~id 202 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGID 202 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeee
Confidence 346677788899889999999999999999999999998875 5688888887 77666543
No 139
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.08 E-value=8.5 Score=38.80 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC------------------CCHHHHHHHHHcCCeEEEe
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY------------------TSLERRVTMRAFGADLILT 168 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~------------------~~~~k~~~~~~~GA~V~~v 168 (307)
.+|.+ |+..++|-.|.+.|.++++.|.+++||=... ....+++.++.+|++++.-
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34554 9999999999999999999999977764221 2345677888999987653
No 140
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.95 E-value=82 Score=29.41 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=86.9
Q ss_pred cccCCCeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCC---
Q 021775 74 SEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSY--- 149 (307)
Q Consensus 74 ~~~~g~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~--- 149 (307)
.++.|..+.+. .|+..-.. .-...+..+.+++. ..|+.... .+.-...-..++..|+|++.+-...
T Consensus 49 a~~~G~~v~~~----~~~~~d~~-~q~~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~ 118 (336)
T PRK15408 49 GKELGVDVTYD----GPTEPSVS-GQVQLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPE 118 (336)
T ss_pred HHHhCCEEEEE----CCCCCCHH-HHHHHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCc
Confidence 34567666542 23322122 22356677777773 44555443 3333455556777899988874321
Q ss_pred -----C---CH---HHH--H-HHHHcC---CeEEEeCCCCC---hHHHHHHHHH-HHHhCCCcEEcC-CCCChhHHHHHH
Q 021775 150 -----T---SL---ERR--V-TMRAFG---ADLILTDPAKG---MGGTVKKAQE-LLESTPNAFMLQ-QFSNPANTRVHF 207 (307)
Q Consensus 150 -----~---~~---~k~--~-~~~~~G---A~V~~v~~~~~---~~~~~~~a~~-~~~~~~~~~~~~-~~~np~~~~~G~ 207 (307)
+ .. .+. + ..+.+| .+|..+.+..+ ..+..+-.++ +.++.++...+. ++.+-. .+.++
T Consensus 119 ~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~ 197 (336)
T PRK15408 119 CRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSL 197 (336)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHH
Confidence 0 11 111 1 122333 57766543221 1222222222 224455655543 233322 22244
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCC-CcEEEEEeC
Q 021775 208 ETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNP-NVKIYGVEP 256 (307)
Q Consensus 208 ~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~-~~~vigVe~ 256 (307)
..+.++++.- +++|.||++ +...+.|+.+++++.+. ++.|+|..-
T Consensus 198 -~~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 198 -QTAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred -HHHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3555777764 679999987 34445588899988753 678888864
No 141
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=72.66 E-value=16 Score=30.38 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEeeC-C-ChHHHHHHHHHHHcCCeEEEEECCC--CCH--HHH----HHHHHcCCeEEEeC
Q 021775 119 IIEPT-S-GNMGISMAFMAAMKGYKMVLTMPSY--TSL--ERR----VTMRAFGADLILTD 169 (307)
Q Consensus 119 vv~~S-s-GN~g~alA~~a~~~G~~~~ivvp~~--~~~--~k~----~~~~~~GA~V~~v~ 169 (307)
|+..+ . +|.+.|++..++++|+.++++.|++ .+. ..+ +.....|.++..++
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 55555 3 8999999999999999999999987 455 223 23455689998885
No 142
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.42 E-value=22 Score=34.07 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=61.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCC-hH-HHHHHHHHHHHhCCCcEE
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG-MG-GTVKKAQELLESTPNAFM 193 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~-~~-~~~~~a~~~~~~~~~~~~ 193 (307)
.+..+..+||..|..+|+.+-..|=.-.|++|.-+-....+.+...||+.+++|-+.+ +. +....-..+..+......
T Consensus 49 ~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIip 128 (374)
T COG0399 49 VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIP 128 (374)
T ss_pred CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEE
Confidence 4568999999999999998655776678899998888899999999999999986421 21 111111122222324455
Q ss_pred cCCCCChhHHH
Q 021775 194 LQQFSNPANTR 204 (307)
Q Consensus 194 ~~~~~np~~~~ 204 (307)
++-+.+|...+
T Consensus 129 Vhl~G~~~dm~ 139 (374)
T COG0399 129 VHLAGQPCDMD 139 (374)
T ss_pred ehhccCCCCHH
Confidence 66667776665
No 143
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=72.22 E-value=33 Score=28.60 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCCcchhHHHHHHHHHHHHcCCCCCCCcEEEee-CCChHHHHHHHHHHHcCCeEEEEECC---------CCCHHHHHHHH
Q 021775 90 PTASIKDRPAVAMLEDAENKNLISPGKTTIIEP-TSGNMGISMAFMAAMKGYKMVLTMPS---------YTSLERRVTMR 159 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~k~~~~~ 159 (307)
|+--+-++.....+.+|.+.|. ++++.+ |+|.++.-++-+... .+++++|.-. ..+.+-...++
T Consensus 7 pG~eNT~~tle~a~erA~elgi-----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI-----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc-----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHH
Confidence 4555678888889999999984 345555 559888876665543 3888887531 24677788889
Q ss_pred HcCCeEEEeC
Q 021775 160 AFGADLILTD 169 (307)
Q Consensus 160 ~~GA~V~~v~ 169 (307)
..||+|..-.
T Consensus 81 erGa~v~~~s 90 (186)
T COG1751 81 ERGAKVLTQS 90 (186)
T ss_pred HcCceeeeeh
Confidence 9999987543
No 144
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=72.21 E-value=23 Score=32.86 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=60.7
Q ss_pred eEEEEeCCCCC-----CCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCCC-H
Q 021775 80 YIAVKQEMFQP-----TASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYTS-L 152 (307)
Q Consensus 80 ~l~~K~E~~np-----tGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~-~ 152 (307)
+-++|.+..-| |-|.---.|+-|+.+-.+.. +|.. |+--++ +--|+++--.|+.+|++.+=++.+... .
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46677777544 23333345677777766543 4553 554443 677888999999999999999987544 4
Q ss_pred HHHHHHHHcCCeEEEeCC
Q 021775 153 ERRVTMRAFGADLILTDP 170 (307)
Q Consensus 153 ~k~~~~~~~GA~V~~v~~ 170 (307)
+-.++++.+||+.++.+.
T Consensus 200 el~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHcCCceEecHH
Confidence 456778999999988864
No 145
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=71.98 E-value=39 Score=29.66 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=44.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++-...........+...|.++..+..+ .+.++..+...+..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999999998776644321222334455667776544322 2344444445555444
No 146
>PLN02740 Alcohol dehydrogenase-like
Probab=71.71 E-value=22 Score=33.60 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=41.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+++|.+ |+..+.|..|.+++.+|+.+|.+-++.+. .+..|++.++.+||+.+.
T Consensus 192 ~~~~~~~g~~-VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSS-VAIFGLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCE-EEEECCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 4455677776 55556899999999999999985344443 356788888999996543
No 147
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.62 E-value=30 Score=32.58 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+++|.+.+|. .+|..|.+++..|+.+|.+-++.+. .+..|++.++.+||+.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 44566777774444 6799999999999999994444443 356788888999996543
No 148
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.36 E-value=79 Score=28.56 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcC----CCcEEEEEeCCC
Q 021775 210 TGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQN----PNVKIYGVEPAE 258 (307)
Q Consensus 210 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~----~~~~vigVe~~~ 258 (307)
...+++++. .++|+|++ .+...+.|+.+++++.+ .++.|+|.+-..
T Consensus 192 ~~~~~l~~~-~~~~ai~~--~~d~~A~g~~~al~~~g~~vp~di~vig~D~~~ 241 (305)
T cd06324 192 QAENLLKRY-PDVRLIWA--ANDQMAFGALRAAKEAGRKPGRDVLFGGVNWSP 241 (305)
T ss_pred HHHHHHHHC-CCccEEEE--CCchHHHHHHHHHHHcCCCcCCCEEEEecCCCH
Confidence 455666653 46898886 35667779999999876 368899887543
No 149
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=71.16 E-value=30 Score=32.45 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+.+|.+ |+..++|..|.+++..|+.+|...++++. ....|++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~-VlV~G~g~vG~~a~q~ak~~G~~~vi~~~--~~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGST-VAIFGLGAVGLAVAEGARIRGASRIIGVD--LNPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 3345667776 55556799999999999999984344443 245688888999996544
No 150
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=71.00 E-value=35 Score=30.88 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 96 DRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 96 dR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-||..+.+..+.+.-.......+|+..+-||-|..+|.+....|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3567777766554333333334699999999999999999999998887765
No 151
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.76 E-value=27 Score=32.79 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=41.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+++|.+.+|. ++|..|.+++..|+.+|.+.++.+. .+..|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 44556777774555 6799999999999999995444443 345678888899996543
No 152
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.74 E-value=52 Score=30.24 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+...+.+|.+.+| ..+|-.|.+++.+|+.+|.+-++++. .+..|++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV-~G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLV-VGAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 34444667777455 46799999999999999998333333 345678888999986544
No 153
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.46 E-value=26 Score=32.46 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+...+.+|.+.+|. ++|..|.+++..|+..|.+.++.+. .+..|++.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 344556677764444 7899999999999999998655553 356778888999996543
No 154
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.85 E-value=31 Score=32.30 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+.+.+|.+.+|. ++|..|.+++..|+.+|...++++.. ...|++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 45667787775555 67999999999999999854444432 4678888889998543
No 155
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=69.50 E-value=43 Score=30.34 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+.+|...+|..|.+++..|+..|.++++... +..+...++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 345445555599999999999999998655533 3457777788998443
No 156
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.47 E-value=41 Score=27.08 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=39.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH----HHHHHHHHcCCeEEEeCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL----ERRVTMRAFGADLILTDP 170 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~----~k~~~~~~~GA~V~~v~~ 170 (307)
+.+|+.+++.-|+++|..-.+.|-..++++..+.+. .....++..|.++..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 347788889999999999999987777777665222 233455677888877654
No 157
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.41 E-value=56 Score=29.52 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=38.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+...+.+|.+.+|...+|..|.+++..|+.+|.+.+++.. +..+...++.+|++-
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 187 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR---RDAGVAELRALGIGP 187 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHhcCCCE
Confidence 3455667776555556699999999999999998766654 334556666678743
No 158
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=69.38 E-value=71 Score=28.86 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.+.+|.+.+|...+|..|.+++..|+..|.+.+++.. +..+...++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667777556656799999999999999998766443 456777778899864443
No 159
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.36 E-value=39 Score=30.64 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=41.7
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.+.+.+|.+.+|. .+|-.|.+++..|+.+|.+++++ . .+..+...++.+|+..+.
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcEEe
Confidence 355667777775555 67999999999999999995443 2 346778888889986543
No 160
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.30 E-value=66 Score=29.51 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=39.5
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
...+.+|.+.+| ..+|..|.+++..|+..|.+.++.+.. ...+...++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 445566666555 668999999999999999986666553 34677788889984
No 161
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.74 E-value=45 Score=30.62 Aligned_cols=88 Identities=10% Similarity=0.073 Sum_probs=51.4
Q ss_pred ccccCCCeEE--EEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC
Q 021775 73 VSEGCGAYIA--VKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT 150 (307)
Q Consensus 73 l~~~~g~~l~--~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 150 (307)
..++.|+.++ .++|+. ...+-.=.+...+..+.+.-...-..++++..+.|+.|+++|..++.+|.+++++-..
T Consensus 108 ~a~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~-- 183 (287)
T TIGR02853 108 LAADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS-- 183 (287)
T ss_pred HHHHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC--
Confidence 3444565554 343332 2333334455555555543211111245999999999999999999999977665442
Q ss_pred CHHHHHHHHHcCCeE
Q 021775 151 SLERRVTMRAFGADL 165 (307)
Q Consensus 151 ~~~k~~~~~~~GA~V 165 (307)
..+......+|.+.
T Consensus 184 -~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 184 -SADLARITEMGLIP 197 (287)
T ss_pred -HHHHHHHHHCCCee
Confidence 33455555666653
No 162
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=68.73 E-value=30 Score=29.67 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=43.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 193 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (307)
+.|--.|||-+|.++|.++...|..++++.....-+. -.|.+++.+.. .++..+.+.+...+. ..++
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~-Di~I 87 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA-DIII 87 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG-SEEE
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc-eeEE
Confidence 4455678899999999999999999999987632111 25778888874 567777777776655 4443
No 163
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=68.66 E-value=45 Score=31.61 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCC---CCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcC
Q 021775 87 MFQPTASIKDRPAVAMLEDAENKNL---ISPGKTTIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFG 162 (307)
Q Consensus 87 ~~nptGS~KdR~a~~~l~~a~~~g~---~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~G 162 (307)
+-.+.|.-..|.+........ .|. +.+. ..|+..+++..+..++..+-. -|=...|++|.-.-..-....+.+|
T Consensus 60 Y~~~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g 137 (393)
T TIGR03538 60 YPTTKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG 137 (393)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC
Confidence 334557767776544332221 121 2221 247777888888777665432 2433457777533333345577899
Q ss_pred CeEEEeCC
Q 021775 163 ADLILTDP 170 (307)
Q Consensus 163 A~V~~v~~ 170 (307)
++++.++-
T Consensus 138 ~~~~~v~~ 145 (393)
T TIGR03538 138 AEPYFLNC 145 (393)
T ss_pred CeEEEeec
Confidence 99998864
No 164
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=68.26 E-value=91 Score=28.28 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+.+.+|.+.+|...+|..|.+++..|+.+|++++.+.+ ...+...++.+|++-+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 3456667776555556799999999999999998666543 3556677788887443
No 165
>PRK05993 short chain dehydrogenase; Provisional
Probab=67.94 E-value=70 Score=28.53 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=38.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
++.+|+.++|.-|.++|......|.+++++... ..++..+...|.+++.+|-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 456788888999999999999999988776543 3455556666777776664
No 166
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=67.84 E-value=31 Score=30.07 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh
Q 021775 123 TSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 123 SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
+++.-|.++|....+.|.++++.-..... .......+.+|.+++.++-. +.++..+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45778888898888889887777654321 11233345678887666643 233333333444443
No 167
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=67.77 E-value=61 Score=29.72 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 111 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.+|.+ |+...+|..|.+++..|+.+|.+++++.+ +..++..++.+|++-+
T Consensus 160 ~~~~~~~-vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 211 (333)
T cd08296 160 GAKPGDL-VAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHY 211 (333)
T ss_pred CCCCCCE-EEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 4556666 55555899999999999999998555433 4567778888998543
No 168
>PRK13243 glyoxylate reductase; Reviewed
Probab=67.25 E-value=42 Score=31.49 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=65.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+.|+.|.++|..++.+|++++++=+. .... ....+|+.. . +++ ++.++. ....+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~-~~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRT-RKPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-CChh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEeC
Confidence 45888999999999999999999998766543 2221 123455431 1 122 233333 4444433
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
..++. -...+..|.++++ +++.+++-++.|+.+ ..+..++++
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 23332 2344666888887 478999999999987 455556654
No 169
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=67.13 E-value=23 Score=34.54 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=40.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHHcCCeEEEe
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-----TSLERRVTMRAFGADLILT 168 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~k~~~~~~~GA~V~~v 168 (307)
.|+..++||.|.-+|..++++|.+++++.... .....+..++..|.+++.-
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 59999999999999999999999999887642 2233446677888888753
No 170
>PRK06182 short chain dehydrogenase; Validated
Probab=66.99 E-value=77 Score=28.06 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=45.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|.-|.++|......|.+++++... ..++..+...+.+++..|-. +.++..+...++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 456788888999999999999999988776543 34555555567777766643 334444444444443
No 171
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.77 E-value=38 Score=29.16 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=68.4
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHcCCe-EEEeCCCCChHHHHHHHHHHHHhCCCc
Q 021775 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-TSLERRVTMRAFGAD-LILTDPAKGMGGTVKKAQELLESTPNA 191 (307)
Q Consensus 114 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~~~~~GA~-V~~v~~~~~~~~~~~~a~~~~~~~~~~ 191 (307)
||. .+..-++|.-+.++-++...-..+++.+=.+. .-..-.+..+.+|.+ +..+.++ -.++.. .+. .++.
T Consensus 34 ~g~-~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~--Ap~~L~---~~~--~~da 105 (187)
T COG2242 34 PGD-RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD--APEALP---DLP--SPDA 105 (187)
T ss_pred CCC-EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc--chHhhc---CCC--CCCE
Confidence 444 48888888888888777333344555543321 222234445667764 4555542 111111 111 2466
Q ss_pred EEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 021775 192 FMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNIL 262 (307)
Q Consensus 192 ~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 262 (307)
.|+....+ ++ --+|...+.-..-..+|+-+-+=-+++-+...++++.-. .|+-|+...+..+
T Consensus 106 iFIGGg~~---i~-----~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~l 167 (187)
T COG2242 106 IFIGGGGN---IE-----EILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPL 167 (187)
T ss_pred EEECCCCC---HH-----HHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceec
Confidence 67665422 11 112222221122356777777777777777777776654 6666666655443
No 172
>PLN02827 Alcohol dehydrogenase-like
Probab=66.70 E-value=44 Score=31.62 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.1
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+.+.+|.+ |+...+|-.|..++..|+.+|.+.++.+.. +..|.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~-VlV~G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSS-VVIFGLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 3455677776 555567999999999999999865555432 4578888899999644
No 173
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=66.69 E-value=40 Score=32.03 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=41.2
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
..+.+|.+.+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|+..++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456666645555569999999999999999865543 3456788888899876543
No 174
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=66.23 E-value=50 Score=30.15 Aligned_cols=51 Identities=14% Similarity=0.331 Sum_probs=36.7
Q ss_pred CcEEEe-eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIE-PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.+.++. ..+|..|.++...|+.+|.+++++.+ +..|...++.+|++.++..
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 444554 57789999999999999997555433 4577888888998765543
No 175
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=66.16 E-value=41 Score=30.95 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+|.+.+| ..+|..|.++...|+.+|.+.++++ ..+..|...++.+|++.++
T Consensus 162 ~~g~~vlV-~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLI-TGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 35666555 5579999999999999999644555 3556788888889986543
No 176
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.74 E-value=71 Score=29.62 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC-CCCCHHHHHHHHHcC-CeEEEeCCCCChHHHHHHHHHHHHhCC
Q 021775 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP-SYTSLERRVTMRAFG-ADLILTDPAKGMGGTVKKAQELLESTP 189 (307)
Q Consensus 114 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp-~~~~~~k~~~~~~~G-A~V~~v~~~~~~~~~~~~a~~~~~~~~ 189 (307)
.|+..+||.+++-.|+++|.-.++.|-+.+++=- .....+..++++..| |.-..+|-+ +.++..+.+.+.-++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 3466788888889999999999999986555432 334556677777667 334455543 57788888888888773
No 177
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.14 E-value=1e+02 Score=27.55 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=39.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+|.+.+|...+|..|.+++..|+..|.+++.+.. +..+...++.+|++-++
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 44556666555555699999999999999999655543 34567777888885443
No 178
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=65.08 E-value=46 Score=31.59 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=43.4
Q ss_pred CCCcchhHHHHHHHHHHHHcCC--CCCCCcEEEeeCCChHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 90 PTASIKDRPAVAMLEDAENKNL--ISPGKTTIIEPTSGNMGISMAFMAAMKG--YKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~~G--~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+.|.-+.|.+....... ..|. +.+. ..|+..+++..+..++..+-.-. -.-.|++|.-.-..-....+.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 45766777654432221 2242 2322 24777777888876665543221 12344555433334455577899999
Q ss_pred EEeCC
Q 021775 166 ILTDP 170 (307)
Q Consensus 166 ~~v~~ 170 (307)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 98864
No 179
>PRK08628 short chain dehydrogenase; Provisional
Probab=64.93 E-value=55 Score=28.61 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+..+|-.|.++|..-...|.+++++............++..|.++..+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 4567888889999999999999999987775443222334555666777655543
No 180
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=64.76 E-value=51 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=37.7
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 114 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+|.+.+|...+|..|.+++..|+.+|.+++++.. .+.|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4455444445599999999999999998666543 45778888999995443
No 181
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.59 E-value=74 Score=27.85 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=44.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|.-|.++|......|.+++++ ...........++.++.++..+..+ .+.++..+...+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 566888888999999999999999987765 3223344455566667666654432 133333333444433
No 182
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=64.45 E-value=39 Score=31.41 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=56.8
Q ss_pred ccccccccCCCeEEEEe-CCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 69 FLNKVSEGCGAYIAVKQ-EMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 69 ~~~~l~~~~g~~l~~K~-E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.++.|.+..++.||==+ +...|+-.. .-++.--+..|.+ .|.+.+.+.-+.|.+.|+-..|+++|+.+++..|
T Consensus 112 ~ve~lA~~s~VPViNgLtD~~HP~Q~L-----ADl~Ti~E~~g~l-~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~P 185 (310)
T COG0078 112 TLEELAKYSGVPVINGLTDEFHPCQAL-----ADLMTIKEHFGSL-KGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATP 185 (310)
T ss_pred HHHHHHHhCCCceEcccccccCcHHHH-----HHHHHHHHhcCcc-cCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECC
Confidence 34556666666655433 333455321 1122223344443 2344333444478999999999999999999999
Q ss_pred CCCCH--HHHHH----HHHcCCeEEEeCC
Q 021775 148 SYTSL--ERRVT----MRAFGADLILTDP 170 (307)
Q Consensus 148 ~~~~~--~k~~~----~~~~GA~V~~v~~ 170 (307)
++..+ .-+.. .+..|+++.+++.
T Consensus 186 k~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 186 KGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 86432 22222 2445999988864
No 183
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=64.31 E-value=37 Score=33.14 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=48.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH----HHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT----MRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 193 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~----~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (307)
..+..+||-.|..++..+- ++-.-.|++|...-...... +..+|+++.+++...+.+ .++. ...++....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~~---~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIVA---LANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHH---hCCcCCeEEE
Confidence 3778899999999888754 33334566676543322232 678999999998532222 2222 2222336777
Q ss_pred cCCCCChh
Q 021775 194 LQQFSNPA 201 (307)
Q Consensus 194 ~~~~~np~ 201 (307)
++...||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 77778887
No 184
>PRK07832 short chain dehydrogenase; Provisional
Probab=64.26 E-value=73 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.+|+.++|..|.++|...+..|.+++++..
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 478888899999999999999988666543
No 185
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=64.23 E-value=61 Score=28.40 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=43.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|..-...|.+++++............+...|.++..+..+ .+.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56678888899999999999999999888765421122233345567666544332 1333333444444443
No 186
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=64.14 E-value=36 Score=27.29 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=37.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
|...++|+.|.-+|+.-++.|.+++++... . +.+.++..|-.+....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~---~-~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS---P-RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH---H-HHHHHHHHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc---c-cHHhhhheeEEEEecc
Confidence 456788999999999999999999998864 2 5666888887776544
No 187
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.10 E-value=56 Score=29.95 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.4
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 111 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.++.+.+|...+|..|.+++..|+.+|.+++++.. +..+...++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4566666555666677999999999999998666544 3456677778887543
No 188
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=63.93 E-value=38 Score=29.75 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 97 RPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 97 R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
||..+.+..+.+.-.......+|+..+-||.|+.+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 4566666655433212333346999999999999999999999988888764
No 189
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.84 E-value=61 Score=28.45 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=44.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..++.-|.++|......|.+++++-.. ........++..|.++..+..+ .+.++..+...+..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA-EAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 566888888999999999999999998776433 2223344556678776554322 2344444444444443
No 190
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=63.66 E-value=1e+02 Score=26.99 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=24.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.+|+.++|.-|.++|......|.+++++-.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 478888899999999999999988666543
No 191
>PRK06348 aspartate aminotransferase; Provisional
Probab=63.32 E-value=88 Score=29.52 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=57.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 87 MFQPTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 87 ~~nptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+-.+.|.--.|.+...... .+.|. ..+ ..|+..+++.+|..++..+-.. -.-.|+++.-.-..-...++.+|+++
T Consensus 62 Y~~~~G~~~lr~~ia~~~~-~~~~~~~~~--~~i~it~G~~~al~~~~~~~~~-~gd~vlv~~p~y~~~~~~~~~~g~~~ 137 (384)
T PRK06348 62 YTDSGGDVELIEEIIKYYS-KNYDLSFKR--NEIMATVGACHGMYLALQSILD-PGDEVIIHEPYFTPYKDQIEMVGGKP 137 (384)
T ss_pred CCCCCCcHHHHHHHHHHHH-HHhCCCCCh--hhEEEcCChHHHHHHHHHHhcC-CCCEEEEeCCCCcchHHHHHHcCCEE
Confidence 3445676556654443221 12221 223 3488888888888777665432 22345556544444566677889999
Q ss_pred EEeCC--CCChHHHHHHHHHHHHhCCCcEEcCCCCChh
Q 021775 166 ILTDP--AKGMGGTVKKAQELLESTPNAFMLQQFSNPA 201 (307)
Q Consensus 166 ~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~ 201 (307)
+.++. +.++.-..+..++..++....++++...||.
T Consensus 138 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt 175 (384)
T PRK06348 138 IILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPT 175 (384)
T ss_pred EEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCC
Confidence 88753 1122111122222222233566665555653
No 192
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=63.22 E-value=31 Score=32.64 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=40.8
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
..+.+|.+.+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456666644544469999999999999999976654 356788888899986543
No 193
>PRK12831 putative oxidoreductase; Provisional
Probab=63.19 E-value=33 Score=33.75 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=39.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---C--CHHHHHHHHHcCCeEEEe
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---T--SLERRVTMRAFGADLILT 168 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---~--~~~k~~~~~~~GA~V~~v 168 (307)
.|+..++||.|.-+|..+.++|.+++++.... . ....+..++..|.+++.-
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 59999999999999999999999988887542 2 234455667788887643
No 194
>PRK07550 hypothetical protein; Provisional
Probab=63.04 E-value=98 Score=29.14 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=45.4
Q ss_pred CCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 91 TASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 91 tGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.|.-..|.+..-.... ..|. +.+ ..|+..++++.|..++..+- .+-.-.|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 4776777555432221 2221 222 34777777788877766553 33344567775444444556788999999887
Q ss_pred C
Q 021775 170 P 170 (307)
Q Consensus 170 ~ 170 (307)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 195
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=62.97 E-value=95 Score=29.02 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+.+|.+.+|. ++|..|.+++..|+.+|.+.++.+.. +..|...++.+|++.++
T Consensus 180 ~~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 180 NVLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 34456677765555 67999999999999999975555443 45778888889985443
No 196
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=62.73 E-value=1e+02 Score=28.00 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
..+.+.+|.+.+| ..+|..|.+++..|+..|.++++ +.......+...++.+|++
T Consensus 158 ~~~~~~~g~~vlI-~g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVV-FGPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 3345566666555 45799999999999999998543 3233446677888888873
No 197
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.67 E-value=61 Score=28.24 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=38.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+.++|..|.++|......|.+++++..... ...-...++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 45688888899999999999999998776654321 12234445667888765543
No 198
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.66 E-value=1.1e+02 Score=27.20 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=37.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+...+.+|.+.+|. ++|-.|.+++..|+..|.+.++++.. ...+...++.+|+.
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGAT 176 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCc
Confidence 35556677775565 57889999999999999983333332 34566677888874
No 199
>PLN02527 aspartate carbamoyltransferase
Probab=62.62 E-value=96 Score=28.80 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=42.7
Q ss_pred HcCCCCCCCcEEEeeCCC---hHHHHHHHHHHHc-CCeEEEEECCC--CCHHHHHHHHHcCCeEEEeC
Q 021775 108 NKNLISPGKTTIIEPTSG---NMGISMAFMAAMK-GYKMVLTMPSY--TSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsG---N~g~alA~~a~~~-G~~~~ivvp~~--~~~~k~~~~~~~GA~V~~v~ 169 (307)
+.|.++ |.+ |+..+-+ |.+.|++..++++ |+.++++.|+. .+......++..|.++..++
T Consensus 145 ~~g~l~-g~k-va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 EIGRLD-GIK-VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred HhCCcC-CCE-EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 445443 333 6666654 6899999998887 99999999986 34445556666788887765
No 200
>PRK14031 glutamate dehydrogenase; Provisional
Probab=62.38 E-value=61 Score=31.83 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHH-HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 96 DRPAVAMLEDAE-NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 96 dR~a~~~l~~a~-~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-||..+.+..+. +.|. ....++|+..+.||-|..+|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~-~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGT-DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCC-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 467777776654 4443 33345699999999999999999999999999877
No 201
>PRK08226 short chain dehydrogenase; Provisional
Probab=62.31 E-value=57 Score=28.59 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=35.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+-.+|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 456788888999999999999999987666443211122333444566665443
No 202
>PRK12828 short chain dehydrogenase; Provisional
Probab=62.19 E-value=77 Score=27.00 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=38.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+.++|--|.++|....+.|.+++++.....+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 566888888999999999999999997776653221 2233445566777776654
No 203
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=61.92 E-value=1.3e+02 Score=27.75 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=37.7
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGY-KMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+.+|.+.+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 3444466665555 679999999999999999 544442 3556777788888853
No 204
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=61.91 E-value=57 Score=30.85 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=38.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~ 171 (307)
..++..++|..|..++..+...+-.-.|++|..+-..-...++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 3588888888887776654333333467777766666677788899999988743
No 205
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=61.91 E-value=78 Score=29.13 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=36.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
++..-+.|+.|++++..++.+|.+++++-.. +.+..+.+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 4888889999999999999999877776433 445677778898754
No 206
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=61.82 E-value=47 Score=31.27 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=35.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..+++..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 47777888888876655544322224566654555566777899999998874
No 207
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=61.80 E-value=74 Score=27.53 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|.-|.++|......|..++++-.. ........++.++.++..+..+- +.++......+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 556777788999999999999999987776543 22333455566676665544321 23333333444433
No 208
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=61.61 E-value=69 Score=32.20 Aligned_cols=52 Identities=15% Similarity=0.003 Sum_probs=41.2
Q ss_pred EEEeeCC---ChHHHHHHHHHHHcC-CeEEEEECCCC--CHHHHHHHHHcCCeEEEeC
Q 021775 118 TIIEPTS---GNMGISMAFMAAMKG-YKMVLTMPSYT--SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 118 ~vv~~Ss---GN~g~alA~~a~~~G-~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~ 169 (307)
+|+..+. +|.+.|++..++.+| +.++++.|++. +..-+..++..|+.+..++
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3666666 699999999999998 99999999864 4445566777898887665
No 209
>PRK07109 short chain dehydrogenase; Provisional
Probab=61.41 E-value=52 Score=30.59 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=44.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++...... ......++.+|+++..+..+ .+.++..+.+.+..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999988776543211 12334556778887665432 2333333344444443
No 210
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.19 E-value=40 Score=31.68 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=43.6
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
++.| +.||+. |...+.|-.|.---.+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 175 k~~g-~~pG~~-vgI~GlGGLGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSG-LGPGKW-VGIVGLGGLGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcC-CCCCcE-EEEecCcccchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3444 347775 666665558877788999999999998643 44678888999999876653
No 211
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=61.14 E-value=69 Score=29.46 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+|.+.+| ..+|-.|.+++..|+.+|.+.++++ ..+..|...++.+|++.+
T Consensus 159 ~~~g~~vlI-~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLV-TGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 456666566 4568899999999999999855555 346778888888998543
No 212
>PRK08589 short chain dehydrogenase; Validated
Probab=61.12 E-value=56 Score=29.09 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=43.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|--|.++|......|.+++++-...........++..|.++..+..+ .+.++......++.++
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 45678888899999999999999998887755411112234455567665544322 1233444444555444
No 213
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=60.91 E-value=74 Score=31.61 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHcCCCCCCCcEEEeeC-CChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 93 SIKDRPAVAMLEDAENKNLISPGKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 93 S~KdR~a~~~l~~a~~~g~~~~g~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
+.++..+...+..|.+.+ .+.||++| ||.+++.+|.+ +-..+.+++.+... .-.+....+|..-+.++.
T Consensus 358 ~~~~aia~sAv~~A~~l~-----akaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~--~~r~l~l~~GV~p~~~~~ 427 (480)
T cd00288 358 STTEAVAMSAVRAAFELG-----AKAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQ--TARQLHLYRGVYPVLFEE 427 (480)
T ss_pred ChHHHHHHHHHHHHHhcC-----CCEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHH--HhhheeeccCcEEEEecc
Confidence 355666666666777665 34455554 49998877665 45578888877521 222222345777666553
No 214
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=60.62 E-value=2.5 Score=29.00 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.3
Q ss_pred ChhHHHHHhhccc------C-CCCCceeeec
Q 021775 1 MAAALRSFLKKRA------L-TCSEPMLMRR 24 (307)
Q Consensus 1 ~~~~~~~~~~~~~------c-~Cg~~l~~~y 24 (307)
|...+.+|..||. | .||+++.+..
T Consensus 1 Mks~mr~C~~CgvYTLk~~CP~CG~~t~~~~ 31 (56)
T PRK13130 1 MKSKIRKCPKCGVYTLKEICPVCGGKTKNPH 31 (56)
T ss_pred CCccceECCCCCCEEccccCcCCCCCCCCCC
Confidence 5667788999995 9 9999987753
No 215
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.39 E-value=53 Score=30.80 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+|.+ |+...+|..|..++..|+.+|.+++++... +..+....+.+||+.++
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 33456666 555778999999999999999986554332 22334555778986443
No 216
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=60.23 E-value=1.4e+02 Score=27.30 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=38.0
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
..+.+|.+.+|. ++|..|.+++.+|+.+|+..++++ .....|...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566665555 689999999999999998434444 23467777788899864
No 217
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=60.15 E-value=1.3e+02 Score=27.55 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+...+.+|.+.++. .+|..|.+++..|+..|++++++.. +..+...++.+|++-
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~~ 206 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGADD 206 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCCE
Confidence 44556677765555 5788899999999999998766543 366777778888643
No 218
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=59.77 E-value=36 Score=32.28 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=36.9
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
++|.+ |+...+|..|.+++..|+.+|.+++++.+. +..+.+.++.+||+.+.
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 35555 666677999999999999999985554432 33446667889996543
No 219
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.76 E-value=1.4e+02 Score=27.29 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=25.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
++.||+..++--|.++|..-.+.|.+++++..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45677777888899999888889988777654
No 220
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.71 E-value=59 Score=29.57 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+.+.+.++.+.+| ..+|..|.+++..++..|.+++++.+. ..+...++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4556677766455 568999999999999999987666543 35777778889853
No 221
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.58 E-value=39 Score=28.10 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=40.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..++||.|.+.|..+..+|.+++++- ....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcc
Confidence 48999999999999999999999866653 356778888899998887753
No 222
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.51 E-value=1e+02 Score=29.87 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
|.+.+|+..+|.-|.++|......|.+++++-...............+++++.+|-. +.++..+...+..++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 356677878899999999999999999777644322222233334567777777643 333333333444333
No 223
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=59.47 E-value=27 Score=30.73 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHcCCCCCCCcEEEee-CCC---hHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCC
Q 021775 105 DAENKNLISPGKTTIIEP-TSG---NMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGA 163 (307)
Q Consensus 105 ~a~~~g~~~~g~~~vv~~-SsG---N~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA 163 (307)
.|...|.- .+.+|++ |.| .+..+||.+|++.|=+.+.++|+... ..-.+.|..+|.
T Consensus 34 SAlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 45555531 3335555 444 37899999999999999999998654 345556666675
No 224
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=59.35 E-value=58 Score=27.28 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-----TSLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
+.||+-+.|..|..+|..-...+-+-+|++... .....+..++..|++|.....+ .+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 347777889999999999999887666666544 2345788889999999876543 2344444444444444
No 225
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=59.29 E-value=43 Score=31.59 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCcEEEeeCC---ChHHHHHHHH-HHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEEeCC
Q 021775 115 GKTTIIEPTS---GNMGISMAFM-AAMKGYKMVLTMPSYT--SLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 115 g~~~vv~~Ss---GN~g~alA~~-a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~~ 170 (307)
|.+ |+..+. +|.+.|++.. ++.+|+.++++.|++. +..-+..++..|..+..++.
T Consensus 159 g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 159 GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 344 666666 6889999976 5577999999999863 55556667778988887763
No 226
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=58.95 E-value=1.4e+02 Score=26.97 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-cCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRA-FGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~-~GA~V 165 (307)
+.+.+.+|.+.+|...+|-.|.+++..++..|.+++++.. +..+...++. +|++-
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~ 194 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDA 194 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCce
Confidence 3345566666455555799999999999999997655543 3456666666 88743
No 227
>PRK05650 short chain dehydrogenase; Provisional
Probab=58.91 E-value=1.3e+02 Score=26.55 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.+|+.++|.-|.++|......|.+++++..
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r 32 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADV 32 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 477888899999999998888988776654
No 228
>PRK06720 hypothetical protein; Provisional
Probab=58.87 E-value=1.1e+02 Score=25.60 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=23.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEE
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTM 146 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 146 (307)
...+|+..++--|.++|......|.+++++-
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 4456666777889999988888888766554
No 229
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=58.86 E-value=51 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.131 Sum_probs=40.2
Q ss_pred EEEeeCC---ChHHHHHHHHHHHc-CCeEEEEECCCC--CHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTS---GNMGISMAFMAAMK-GYKMVLTMPSYT--SLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~Ss---GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~~ 170 (307)
+|+..+. +|.+.|++..++.+ |++++++-|++. +...+..++..|+.|..++.
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d 301 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDD 301 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcC
Confidence 3666666 69999999997765 999999999864 44455666677988877653
No 230
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.73 E-value=32 Score=35.30 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=40.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC---------C---------HHHHHHHHHcCCeEEEe
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT---------S---------LERRVTMRAFGADLILT 168 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~k~~~~~~~GA~V~~v 168 (307)
+.|+..++|-.|.+.|+..++.|++++||-.... + ......++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 4599999999999999999999999988854321 1 13567778999988653
No 231
>PRK05826 pyruvate kinase; Provisional
Probab=58.66 E-value=1.7e+02 Score=28.95 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCeEEEeCCCC---Ch-HHHHHHHHHHHHhCCCcEEc
Q 021775 130 SMAFMAAMKGYKMVLT-----------MPSYTSLERRVTMRAFGADLILTDPAK---GM-GGTVKKAQELLESTPNAFML 194 (307)
Q Consensus 130 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~V~~v~~~~---~~-~~~~~~a~~~~~~~~~~~~~ 194 (307)
-+...|+..|.++++- .|..+....+...-..|++-+...++. .| .++.+...+++++....++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3456688899998874 344444456777777899977765432 23 25555444444433221111
Q ss_pred C---CC-CC--hhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 195 Q---QF-SN--PANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 195 ~---~~-~n--p~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
. .. .+ ....+ .....+.++.++++ ..+.||+..-+|.++-.+++ +.|.+.|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~-~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRIDE-AIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchHH-HHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 0 00 00 01122 34455667777773 26789999999998655544 479999999988654
No 232
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=58.59 E-value=1.4e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=39.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+.+|.+.+|...+|-.|.+++..++..|.+++++.. +..+...++.+|++-
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 187 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDR 187 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCce
Confidence 355667777666666899999999999999998655543 345666667788743
No 233
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=58.41 E-value=1.1e+02 Score=26.47 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=34.8
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+.+|.+.++...++ .|.+++..++..|.+++++.+. ..+...++.+|++.
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 33345666645554445 9999999999999776666443 35566667777543
No 234
>PLN00175 aminotransferase family protein; Provisional
Probab=58.36 E-value=1.3e+02 Score=28.76 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 91 TASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 91 tGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
.|.-..|.+..-... .+.|. +.+.. .|+..+++..|..++..+- ++-.-.|++++-.-..-...++.+|++++.++
T Consensus 91 ~G~~~Lr~aia~~~~-~~~g~~~~~~~-~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 167 (413)
T PLN00175 91 FGVPELNSAIAERFK-KDTGLVVDPEK-EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVT 167 (413)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCCCC-CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEE
Confidence 365556654443222 12232 23321 3777777788877666643 32223444454344445566788999998886
Q ss_pred CCC-ChHHHHHHHHHHHHhCCCcEEcCCCCChh
Q 021775 170 PAK-GMGGTVKKAQELLESTPNAFMLQQFSNPA 201 (307)
Q Consensus 170 ~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~np~ 201 (307)
-.. ++.--.+..++........++++..+||.
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPt 200 (413)
T PLN00175 168 LRPPDFAVPEDELKAAFTSKTRAILINTPHNPT 200 (413)
T ss_pred CCcccCCCCHHHHHHhcCcCceEEEecCCCCCC
Confidence 421 11111122222222223566666556664
No 235
>PRK06114 short chain dehydrogenase; Provisional
Probab=58.11 E-value=1.1e+02 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=37.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+.++|--|.++|......|.++++....... ......++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 456888888999999999999999988877543221 222345566676665543
No 236
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=57.93 E-value=72 Score=28.03 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=48.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHH-------------HHHHHHcCCeEEEeCCCCChHHHHHHHHHH
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLER-------------RVTMRAFGADLILTDPAKGMGGTVKKAQEL 184 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k-------------~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~ 184 (307)
++..-++||-|.++|..-+..|.+++|--.+.....+ ......-+++|+++--. |.......+++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 4778889999999999999999998887544221111 01112334566655432 55555666666
Q ss_pred HHhCCCcEEcCCCCCh
Q 021775 185 LESTPNAFMLQQFSNP 200 (307)
Q Consensus 185 ~~~~~~~~~~~~~~np 200 (307)
....++...++. .||
T Consensus 81 ~~~~~~KIvID~-tnp 95 (211)
T COG2085 81 RDALGGKIVIDA-TNP 95 (211)
T ss_pred HHHhCCeEEEec-CCC
Confidence 655545666554 354
No 237
>PRK07062 short chain dehydrogenase; Provisional
Probab=57.59 E-value=1.2e+02 Score=26.51 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=26.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+.++|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 456888888999999999999999987766543
No 238
>PLN02702 L-idonate 5-dehydrogenase
Probab=57.59 E-value=90 Score=29.06 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=42.1
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+...+.+|.+.+|. .+|..|.++...++.+|.+.++.+.. +..|...++.+|+....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44455666664555 67999999999999999986666553 46778888889987654
No 239
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.51 E-value=85 Score=28.52 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
..+.++.+.++. ..|..|.+++..++..|++++++.+ +..+...++.+|++.++.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 456666665555 6677999999999999998766654 345667777888765543
No 240
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.47 E-value=77 Score=28.31 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=38.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+.+|.+.++...+|..|.+++..|+..|.+++++.+. .+...++.+|+.-
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~ 190 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADE 190 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCE
Confidence 3345666665555556999999999999999987666532 5667778888743
No 241
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.42 E-value=1e+02 Score=26.62 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=38.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL--ERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~~~~~GA~V~~v~~ 170 (307)
++.+|+..+|.-|..+|..-...|.+++++...+... .....++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4568888889999999999999999887754432221 223445667887766543
No 242
>PRK06139 short chain dehydrogenase; Provisional
Probab=57.40 E-value=59 Score=30.30 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=37.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
++.||+..+|--|.++|...+..|.+++++...... ......++.+|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 456777788999999999999999997776543211 122345567788876543
No 243
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=57.24 E-value=72 Score=24.73 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=31.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHh
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLES 187 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~ 187 (307)
|+...+|++++.+|.+= -..|.+++.|.. ..-.+....+|..-+..+... +.++..+.+.+.+.+
T Consensus 21 vv~T~sG~ta~~isk~R--P~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~ 86 (117)
T PF02887_consen 21 VVFTESGRTARLISKYR--PKVPIIAVTPNE--SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKE 86 (117)
T ss_dssp EEE-SSSHHHHHHHHT---TSSEEEEEESSH--HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHH
T ss_pred EEECCCchHHHHHHhhC--CCCeEEEEcCcH--HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHH
Confidence 33444588777766552 346666666641 111222234466555555432 344444444444444
No 244
>PRK10083 putative oxidoreductase; Provisional
Probab=57.04 E-value=1.1e+02 Score=27.83 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 106 a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+...+.+|.+ |+...+|-.|.+++..|+. +|.+.++.+.. ...|...++.+|++-++
T Consensus 152 ~~~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 152 VTGRTGPTEQDV-ALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHhcCCCCCCE-EEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 344556677776 5555578889988888886 59887666543 56788888999996554
No 245
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=57.00 E-value=20 Score=30.36 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
|..-++|..|.++|..++..|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 777889999999999999999999999774
No 246
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.96 E-value=1e+02 Score=26.32 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+.++|..|.+++......|.+++++.....+ ......++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 456888888999999999999999987666643221 1223334556777776653
No 247
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.90 E-value=72 Score=28.61 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=48.6
Q ss_pred HHHHHHHHHHc--CCeEEEEECC-CCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEE---cCCCCChh
Q 021775 128 GISMAFMAAMK--GYKMVLTMPS-YTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM---LQQFSNPA 201 (307)
Q Consensus 128 g~alA~~a~~~--G~~~~ivvp~-~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~np~ 201 (307)
|..+.++++.+ |.+.. -++. ..-..-++.....|-.|.++++. -....+.++.+.++. +.-. .++|.+|.
T Consensus 69 G~gvv~~~~~~~~~~~~~-Rv~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~ 144 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVS-RVAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPE 144 (243)
T ss_pred CHHHHHHHHHhcCCCCCC-eeChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHH
Confidence 34666777665 43311 1121 11122344445678899999874 223333444455555 4432 23443332
Q ss_pred HHHHHHHHHHHHHHHhhCC-CCCEEEEecCchh
Q 021775 202 NTRVHFETTGPEIWEDTMG-QVDIFVMGIGSGG 233 (307)
Q Consensus 202 ~~~~G~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg 233 (307)
- -.+|++++.. .||.++++.|+-=
T Consensus 145 e--------~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 Q--------RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred H--------HHHHHHHHHhcCCCEEEEECCCcH
Confidence 1 1235555542 4999999999743
No 248
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=56.89 E-value=1.3e+02 Score=28.23 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHcCCCCCCCcEEEeeCCC--hHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH----HHHcCCeEEEeC
Q 021775 107 ENKNLISPGKTTIIEPTSG--NMGISMAFMAAMKGYKMVLTMPSYT--SLERRVT----MRAFGADLILTD 169 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~----~~~~GA~V~~v~ 169 (307)
++.|.++ |. +|+..+-+ |.+.|++..++++|+.++++.|+.. +...+.. .+..|.++...+
T Consensus 148 e~~g~l~-g~-~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 148 EHFGPLK-GL-KLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HHhCCCC-CC-EEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 3446443 33 36666664 8999999999999999999999863 3333322 345788887765
No 249
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=56.61 E-value=1.1e+02 Score=27.41 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=37.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+.+.+.+|.+.+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 33445666665555566899999999999999987665543 3456666778864
No 250
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=56.52 E-value=1.2e+02 Score=28.31 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=40.1
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+...+.+|.+.+|. ++|..|.+++..|+.+|.+.++.+. .+..|...++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVD--INKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCC
Confidence 44556777775554 7799999999999999987555543 256677888889984
No 251
>PRK12937 short chain dehydrogenase; Provisional
Probab=56.43 E-value=1.1e+02 Score=26.39 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=38.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+..+|.-|.++|......|.+++++.....+ ......++.++.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456788888999999999999999988776543321 1233445667887776553
No 252
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=56.31 E-value=1.4e+02 Score=26.21 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+.+.+|.+.++...+|..|.+++..++.+|++.+++.+. ..+...++.+|++-
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 168 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPH 168 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 345667787775665678999999999999999986555433 45666677888743
No 253
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=56.27 E-value=1.5e+02 Score=26.38 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.+.+.+|.+.+|...+|..|.+++..++..|.+++++.. +..+...++.+|++.+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIA 188 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 34566777777666666799999999999999998665543 2345555677776443
No 254
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=55.98 E-value=53 Score=32.26 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=39.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--------------C----HHHHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--------------S----LERRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~k~~~~~~~GA~V~~ 167 (307)
.|+..++|-.|.+.|..+++.|.++++|-.... + .....++..+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 599999999999999999999999998864321 1 1245667889988864
No 255
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.85 E-value=84 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 466788888999999999999999988877654
No 256
>PLN02342 ornithine carbamoyltransferase
Probab=55.78 E-value=60 Score=30.81 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCC-eEEEeC
Q 021775 107 ENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGA-DLILTD 169 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA-~V~~v~ 169 (307)
++.|.++ |.+ |+..+- .|.+.|++.+++++|+.++++.|+.- +...+..++..|. ++...+
T Consensus 187 e~~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 187 EHIGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HHhCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 3455443 344 544444 68999999999999999999999863 3444555666774 666554
No 257
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=55.78 E-value=1.9e+02 Score=27.64 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=21.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
|..-++|+.+.+++++++..|+.+.+++.
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~~ 31 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYVA 31 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEEE
Confidence 66677788888888888888776666654
No 258
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.69 E-value=88 Score=28.54 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=38.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~~ 170 (307)
++.||+..+|.-|.++|......|.++++.-.... .......++..|.+++.+..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 45688888899999999999999998766533221 12234556677888776654
No 259
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.58 E-value=1e+02 Score=28.20 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
.+.+.+.+|.+.+|. .+|-.|.+++..++.+|.+.++.+. .+..+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCc
Confidence 345566777775555 5699999999999999988666554 356788888889984
No 260
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=55.45 E-value=87 Score=29.50 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+.+.+++|.+.+|. ++|..|.+++..++.+|.+-++++. ....+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 44566777664444 7899999999999999994344443 245678888889984
No 261
>PRK06836 aspartate aminotransferase; Provisional
Probab=55.25 E-value=1.4e+02 Score=28.25 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=43.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCC-hHHHHHHHHHHHHhCCCcEEcCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG-MGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
.|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.+.+ +.--.+...+...+.....++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeC
Confidence 3777777777776655442 222234555553433345566789999998865322 11011222222222335666655
Q ss_pred CCChh
Q 021775 197 FSNPA 201 (307)
Q Consensus 197 ~~np~ 201 (307)
..||.
T Consensus 177 p~NPt 181 (394)
T PRK06836 177 PNNPT 181 (394)
T ss_pred CCCCC
Confidence 55653
No 262
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=55.20 E-value=1.2e+02 Score=27.15 Aligned_cols=55 Identities=22% Similarity=0.430 Sum_probs=38.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+.+.+.++...+|...+|..|.+++..|+.+|.+++++.+ ...+...++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 4455666666555555799999999999999998655433 344566667788743
No 263
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=55.13 E-value=87 Score=27.57 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=43.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|..|.++|......|.+++++-..... ......++..|+++..+..+- +..+..+...+..++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456888888999999999999999987766332111 122334555677776554322 333334444444433
No 264
>PRK08703 short chain dehydrogenase; Provisional
Probab=55.11 E-value=1.4e+02 Score=25.71 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.+.+|+.++|..|.++|......|.+++++-.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 45678888899999999999999998666543
No 265
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=55.10 E-value=1.5e+02 Score=26.14 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=38.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.+.+|.+.+|...+|..|.+++..++.+|.+++++. .+..+...++.+|++-+
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~ 185 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHV 185 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEE
Confidence 35566666645555579999999999999998865553 24456666777887443
No 266
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=54.88 E-value=1.5e+02 Score=27.97 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=40.7
Q ss_pred cCCCCCCCcEEEeeCC--ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHH----HHHHHcCCeEEEeC
Q 021775 109 KNLISPGKTTIIEPTS--GNMGISMAFMAAMKGYKMVLTMPSYT--SLERR----VTMRAFGADLILTD 169 (307)
Q Consensus 109 ~g~~~~g~~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~----~~~~~~GA~V~~v~ 169 (307)
.|.++ |.+ |+..+- .|.++|++.+++++|+.++++.|++. +...+ ...+..|+++...+
T Consensus 150 ~g~l~-g~k-ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 150 KKPYK-DIK-FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cCCcC-CcE-EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 35443 333 655555 49999999999999999999999863 22223 22346788887665
No 267
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=54.86 E-value=81 Score=28.98 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=37.1
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+|.+.+| ..+|..|.+++..|+.+|.+.++++. .+..|....+.+|++.+
T Consensus 162 ~~g~~vlV-~g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLI-TGCGPIGLMAIAVAKAAGASLVIASD--PNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCccee
Confidence 45666555 45689999999999999985445553 46677788888998543
No 268
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.73 E-value=86 Score=27.33 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=36.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+.++|..|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 566788888999999999999999987665432111 122334555677776553
No 269
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=54.72 E-value=1.6e+02 Score=27.31 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=37.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+...+.+|.+.+|. ..|..|.+++..|+..|.+.++++. .+..|...++.+|+.
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~--~~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVD--PVPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHhCCe
Confidence 34456677775555 6799999999999999987444443 244566667788874
No 270
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=54.65 E-value=66 Score=29.86 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHcCCCCCCCcEEEeeC-CChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH-HHHcCCeEEEeC
Q 021775 107 ENKNLISPGKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVT-MRAFGADLILTD 169 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~-~~~~GA~V~~v~ 169 (307)
++.|.++ |.+ |+..+ .+|.++|++..++++|++++++-|+.- +...++. .+..|.++...+
T Consensus 145 e~~g~l~-gl~-i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 145 EHRGSLK-GLK-VAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HHhCCcC-CcE-EEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 3456543 344 44444 389999999999999999999999863 2222222 466788887665
No 271
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=54.55 E-value=44 Score=31.04 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=72.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+-|+-|+.+|..++.+|++++.+=|..... ..+.+ .+ ++ .++.++. ....++-
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------~~~~~--~~----~l-------~ell~~s-Dvv~lh~ 204 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------NEEYE--RV----SL-------EELLKTS-DIISIHA 204 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-------ccCce--ee----cH-------HHHhhcC-CEEEEeC
Confidence 458899999999999999999999988775531110 11111 11 12 2333333 4444432
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHhcCCCcEEEEEeCCC
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKSQNPNVKIYGVEPAE 258 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~~~~~~~vigVe~~~ 258 (307)
|.+.+ -++-+..|.+++| +++++++-+|-|+.+ ..+..+++. .... .|.+.-.
T Consensus 205 ---Plt~~-T~~li~~~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~--g~i~-AaLDV~~ 259 (311)
T PRK08410 205 ---PLNEK-TKNLIAYKELKLL--KDGAILINVGRGGIVNEKDLAKALDE--KDIY-AGLDVLE 259 (311)
T ss_pred ---CCCch-hhcccCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHc--CCeE-EEEecCC
Confidence 33443 4456788999998 589999999999987 577777775 3455 6666543
No 272
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=54.37 E-value=1.7e+02 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+.+|.+ |+...+|..|.+++..|+.+|.+.++++. .+..|...++.+|++.
T Consensus 173 ~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~ 223 (350)
T cd08240 173 LVADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADV 223 (350)
T ss_pred CCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcE
Confidence 334555 55557899999999999999996555553 3466777788888753
No 273
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=54.16 E-value=1.7e+02 Score=26.60 Aligned_cols=54 Identities=28% Similarity=0.397 Sum_probs=37.1
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+...+.+|.+.+|. .+|-.|.+++..|+..|++.++++. .+..+...++.+|++
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~ 212 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGAD 212 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCc
Confidence 34456777775555 5788999999999999999444432 245566666777763
No 274
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=54.05 E-value=86 Score=29.45 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=40.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+...+.+|.+.+| ...|..|.+++..|+.+|.+.++++. ....|...++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 4445566776455 67799999999999999985444443 3567888888999853
No 275
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=53.75 E-value=76 Score=29.41 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH----HHHcCCeEEEeC
Q 021775 107 ENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVT----MRAFGADLILTD 169 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~----~~~~GA~V~~v~ 169 (307)
++.|.++ |.+ |+..+- +|.+.|++..++++|+.++++.|+.. +...... .+..|+++...+
T Consensus 141 e~~g~l~-g~~-v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 141 EHFGKLK-GVK-VVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HHhCCCC-CcE-EEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 3456442 344 444433 89999999999999999999999863 2333333 355788887765
No 276
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=53.66 E-value=84 Score=29.78 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=30.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
++..++|..|..+|..+-..+-.-.|++|...-......+..+|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5556666666666555432222235666665544455566777888887764
No 277
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=53.48 E-value=56 Score=32.08 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=39.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---------CC---------HHHHHHHHHcCCeEEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---------TS---------LERRVTMRAFGADLIL 167 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---------~~---------~~k~~~~~~~GA~V~~ 167 (307)
..|+..++|-.|.+.|..+++.|.+++++-... .+ ......++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 359999999999999999999999988884321 11 1346678889998864
No 278
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=53.48 E-value=1e+02 Score=27.31 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=36.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|..|.++|......|.+++++-.... .......++.+|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 45577778899999999999999998777654321 1122334455677766544
No 279
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=53.35 E-value=25 Score=36.18 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=39.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC---------C---------HHHHHHHHHcCCeEEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT---------S---------LERRVTMRAFGADLIL 167 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~k~~~~~~~GA~V~~ 167 (307)
+.|+.-++|-.|.+.|.+.++.|++++||=.... + ......++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3599999999999999999999999888843211 1 1245667888988764
No 280
>PRK06172 short chain dehydrogenase; Provisional
Probab=53.16 E-value=1.1e+02 Score=26.66 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=37.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 466788888999999999999999987776543221 122344566777765543
No 281
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=53.15 E-value=1.4e+02 Score=27.15 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+...+.+|.+.+|.. +|-.|.+++..|+. .|.+++++.. +..+.+.++.+|++.++.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 445567777755555 78899999999997 4987655543 456788888899865543
No 282
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=53.12 E-value=98 Score=29.03 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=73.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
+++-.-+.|+=|.++|..++.+|+++..+-+... +.... ..+++-+. ..++.++. +...++
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~---~~~~~y~~-------------l~ell~~s-Dii~l~- 207 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEK---ELGARYVD-------------LDELLAES-DIISLH- 207 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHh---hcCceecc-------------HHHHHHhC-CEEEEe-
Confidence 4588999999999999999999999888876533 22222 23332221 23444554 455443
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHhcC
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKSQN 246 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~~~ 246 (307)
-|.+.+ =+..+..|.+++| ++.++++-+|-|+.+ .++..++++-.
T Consensus 208 --~Plt~~-T~hLin~~~l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 208 --CPLTPE-TRHLINAEELAKM--KPGAILVNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred --CCCChH-HhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 344554 4567888999999 478999999999987 78888888643
No 283
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=53.07 E-value=1.6e+02 Score=26.00 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
+.+.+|.+.+|...+|..|.+++..++..|.++++..+. ..+.+.+..+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 456666775666667999999999999999886655442 355666677787544
No 284
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=53.01 E-value=1.1e+02 Score=29.84 Aligned_cols=54 Identities=13% Similarity=0.006 Sum_probs=38.0
Q ss_pred EEEeeCCChHHHHHHHHHHH------cCC--eEEEEECCCCCHHHHHHHHHcCCeEEEeCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAM------KGY--KMVLTMPSYTSLERRVTMRAFGADLILTDPA 171 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~------~G~--~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~ 171 (307)
.++..++|..|..+|..+.. .++ .-.|++|...-..-...+..+|+++++++-+
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 47788888888887776542 132 2457777766666677778899999988753
No 285
>PRK06483 dihydromonapterin reductase; Provisional
Probab=52.99 E-value=1.5e+02 Score=25.45 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|--|.++|......|.+++++-.... .....++..|+..+.+|-. +.++..+...+..+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 35578888899999999999999998877654322 2344556678777666643 33344444444443
No 286
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=52.67 E-value=1.6e+02 Score=26.90 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=37.0
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCC
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA 163 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA 163 (307)
.+.+.++.+.+|.. .|..|.+++..|+..|++++++.. +..+...++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 44456666655555 799999999999999998666543 3556677777887
No 287
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=52.56 E-value=4.1 Score=23.10 Aligned_cols=7 Identities=14% Similarity=0.624 Sum_probs=3.9
Q ss_pred C-CCCCce
Q 021775 14 L-TCSEPM 20 (307)
Q Consensus 14 c-~Cg~~l 20 (307)
| .||.+|
T Consensus 19 C~~CG~~L 26 (26)
T PF13248_consen 19 CPNCGAKL 26 (26)
T ss_pred ChhhCCCC
Confidence 6 666543
No 288
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=52.39 E-value=1.2e+02 Score=27.38 Aligned_cols=53 Identities=17% Similarity=0.395 Sum_probs=37.6
Q ss_pred CCCCC-cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 112 ISPGK-TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 112 ~~~g~-~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+|. +.+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 55666 64555556999999999999999986655432 3455777888985433
No 289
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=52.38 E-value=96 Score=26.75 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=37.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~ 169 (307)
+..+|+.++|.-|.++|......|.+++++..... ....+..++..|+++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 45588888899999999999999998766553322 1223455566788776543
No 290
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=52.34 E-value=1.2e+02 Score=28.63 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=47.2
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHcCC--CCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcC
Q 021775 86 EMFQPTASIKDRPAVAMLEDAENKNL--ISPGKTTIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFG 162 (307)
Q Consensus 86 E~~nptGS~KdR~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~G 162 (307)
.+..+.|....|-+..... .+.+. +.+..-.|+..+++..|..++..+-. ..---.|++|.-.-+.-...++.+|
T Consensus 64 ~Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g 141 (396)
T PRK09257 64 NYLPIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG 141 (396)
T ss_pred CcCCCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC
Confidence 3444568888886655332 22221 13321013777778888888864332 1211345566545455567778899
Q ss_pred CeEEEeC
Q 021775 163 ADLILTD 169 (307)
Q Consensus 163 A~V~~v~ 169 (307)
++++.++
T Consensus 142 ~~~v~v~ 148 (396)
T PRK09257 142 LEVKTYP 148 (396)
T ss_pred CcEEEEe
Confidence 9999886
No 291
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=52.00 E-value=89 Score=28.31 Aligned_cols=49 Identities=31% Similarity=0.498 Sum_probs=33.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCC
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA 163 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA 163 (307)
+...+.+|.+.+|...+|..|.+++..|+..|.+++++. +...++.+|+
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~ 204 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGA 204 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCC
Confidence 335566777755555569999999999999999865543 1244455666
No 292
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=51.77 E-value=99 Score=30.12 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=39.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCC-eEEEEECCC-----CCHHHHHHHHHcCCeEEEe
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGY-KMVLTMPSY-----TSLERRVTMRAFGADLILT 168 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~-----~~~~k~~~~~~~GA~V~~v 168 (307)
+|+..++||.|.-+|..+.++|. +++++.... ........++..|.+++.-
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 49999999999999999999998 788876532 2344566677888887753
No 293
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=51.72 E-value=1.2e+02 Score=27.28 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=39.5
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
..+.++.+.+|...+|..|.+++..++..|.+++++.. ...+...++.+|++.
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 55667777666777799999999999999999776653 335566667778743
No 294
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.60 E-value=69 Score=26.36 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCC-CCEEEEecCchh
Q 021775 155 RVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQ-VDIFVMGIGSGG 233 (307)
Q Consensus 155 ~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~-~d~vv~pvG~Gg 233 (307)
-+.++..|.+|+-.+-..+-+++.+.| .++.....-++..+ +||.+...++.|.+... ++.|.+-+ +|-
T Consensus 33 a~~l~d~GfeVi~~g~~~tp~e~v~aA---~~~dv~vIgvSsl~------g~h~~l~~~lve~lre~G~~~i~v~~-GGv 102 (143)
T COG2185 33 ARALADAGFEVINLGLFQTPEEAVRAA---VEEDVDVIGVSSLD------GGHLTLVPGLVEALREAGVEDILVVV-GGV 102 (143)
T ss_pred HHHHHhCCceEEecCCcCCHHHHHHHH---HhcCCCEEEEEecc------chHHHHHHHHHHHHHHhCCcceEEee-cCc
Confidence 456678888888777544444444444 33333444454432 47788888888887532 55555222 223
Q ss_pred HHHHHHHHHHhcCC
Q 021775 234 TVSGVGQYLKSQNP 247 (307)
Q Consensus 234 ~~~Gi~~~~k~~~~ 247 (307)
...+=...|+++.+
T Consensus 103 ip~~d~~~l~~~G~ 116 (143)
T COG2185 103 IPPGDYQELKEMGV 116 (143)
T ss_pred cCchhHHHHHHhCc
Confidence 33343556666653
No 295
>PRK07791 short chain dehydrogenase; Provisional
Probab=51.56 E-value=1.5e+02 Score=26.56 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---------C-CHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHH
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---------T-SLERRVTMRAFGADLILTDPA-KGMGGTVKKAQE 183 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---------~-~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~ 183 (307)
|++.+|+..++.-|.++|......|.+++++-... . .......++..|.++..+..+ .+.++..+...+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 35668888889999999999999999877764321 1 112234445567776554322 234445555555
Q ss_pred HHHhC
Q 021775 184 LLEST 188 (307)
Q Consensus 184 ~~~~~ 188 (307)
..++.
T Consensus 86 ~~~~~ 90 (286)
T PRK07791 86 AVETF 90 (286)
T ss_pred HHHhc
Confidence 55543
No 296
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=51.47 E-value=60 Score=30.36 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=68.1
Q ss_pred cEEEeeCCChHHHHHHHHHH-HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcC
Q 021775 117 TTIIEPTSGNMGISMAFMAA-MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQ 195 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (307)
++|..-+-|+-|+.+|..++ .+|++++.+-|. .+.. ....+|.+. ++ ++ ++.++. ....++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~-~~~~---~~~~~~~~~--~~----l~-------ell~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARR-HHKE---AEERFNARY--CD----LD-------TLLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCC-Cchh---hHHhcCcEe--cC----HH-------HHHHhC-CEEEEe
Confidence 45888999999999999998 899988765443 2221 123455432 21 32 333443 455543
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 196 QFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 196 ~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
--.+|.+ .+-+..|.+++| +++.+++-++-|+.+ ..+..++++
T Consensus 208 ~plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDET----HHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChHH----hhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 3334432 345777889998 479999999999987 677777764
No 297
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=51.41 E-value=83 Score=29.27 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=42.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHH-HhCCCcEEcCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELL-ESTPNAFMLQQ 196 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 196 (307)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+.++.--.+...+.. .......+++.
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~ 156 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCN 156 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 3777776677666655443 222234455543334455566889999998864322110011122222 22336677655
Q ss_pred CCChh
Q 021775 197 FSNPA 201 (307)
Q Consensus 197 ~~np~ 201 (307)
..||.
T Consensus 157 p~NPt 161 (351)
T PRK14807 157 PNNPT 161 (351)
T ss_pred CCCCC
Confidence 55653
No 298
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.37 E-value=1.3e+02 Score=27.69 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.+.+.+|.+.+|. ++|..|.+++..|+.+|.+.++++. .+..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTD--IDPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcEEe
Confidence 356677788875664 5688899999999999998444443 234566777778886443
No 299
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=51.36 E-value=84 Score=29.49 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=42.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQF 197 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (307)
.|+..+++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++.+.++.--.+...+..++....+++...
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 3777777677766554443 222223444543434455667889999998865322110111122222233356666555
Q ss_pred CChh
Q 021775 198 SNPA 201 (307)
Q Consensus 198 ~np~ 201 (307)
.||.
T Consensus 169 ~NPt 172 (371)
T PRK05166 169 SNPV 172 (371)
T ss_pred CCCC
Confidence 5653
No 300
>PLN02306 hydroxypyruvate reductase
Probab=51.21 E-value=78 Score=30.47 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=69.7
Q ss_pred cEEEeeCCChHHHHHHHHHH-HcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEc
Q 021775 117 TTIIEPTSGNMGISMAFMAA-MKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLESTPNAFML 194 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~ 194 (307)
++|..-+.|+-|+.+|..++ .+|++++.+=|. ...........+|..+...+... .+. ......++.++. ....+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s-DiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA-DVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC-Cchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC-CEEEE
Confidence 45889999999999999975 899998776553 22222222234543322111100 000 000123333443 44444
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 195 QQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 195 ~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
+- |.+.+ -++-+..|.+++| +++++++-+|-|+.+ ..+..++++
T Consensus 243 h~---Plt~~-T~~lin~~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 243 HP---VLDKT-TYHLINKERLALM--KKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred eC---CCChh-hhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 32 33333 4456777999998 479999999999987 566677765
No 301
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=51.16 E-value=88 Score=28.11 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCC--CChhHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 021775 154 RRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQF--SNPANTRVHFETTGPEIWEDTMGQVDIFVMGIG 230 (307)
Q Consensus 154 k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG 230 (307)
--+.+...||++.++--. +.-..+.++++++. +..++-+. .|.. ...++.-+|-++. +++|.+|.+++
T Consensus 24 IAk~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~d~----~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 24 IAKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTNDE----SIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCCHH----HHHHHHHHHHHhh-CcccEEEEEec
Confidence 445677788888877532 24456677777776 44333333 2322 3344444555554 46888888877
No 302
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=51.06 E-value=1.2e+02 Score=26.26 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=37.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+-.+|--|.++|......|.++++....... ......++..|.++..+..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456788888999999999999999987765433211 1122445567778876654
No 303
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=51.01 E-value=40 Score=28.59 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEe
Q 021775 209 TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVE 255 (307)
Q Consensus 209 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 255 (307)
..+.++-++ +..||.|+.=.|=|-++ .+|+.+|+.++++-.
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 334444444 56799999988888775 899999999999853
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=50.96 E-value=1.9e+02 Score=26.10 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=39.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.+.+.++.+.++ ..+|..|.+++..|+..|.+++++.+ +..+...++.+|++-+..
T Consensus 159 ~~~~~~~~~~vli-~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 159 RAGEVKPGETVLV-IGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred hccCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 3445667766555 46788999999999999998554433 456677778888755443
No 305
>PRK09414 glutamate dehydrogenase; Provisional
Probab=50.59 E-value=66 Score=31.61 Aligned_cols=52 Identities=21% Similarity=0.068 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 96 DRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 96 dR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-||..+.+..+.+.........+|+..+-||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777776654433333345699999999999999999888888877755
No 306
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=50.58 E-value=1.3e+02 Score=28.37 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEC-CCC--CHHHHHH----HHHcCCeEEEeC
Q 021775 125 GNMGISMAFMAAMKGYKMVLTMP-SYT--SLERRVT----MRAFGADLILTD 169 (307)
Q Consensus 125 GN~g~alA~~a~~~G~~~~ivvp-~~~--~~~k~~~----~~~~GA~V~~v~ 169 (307)
+|.+.|++..++++|++++++.| ++. +..-+.. +...|.++...+
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48999999999999999999999 653 3322322 356788887765
No 307
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=50.56 E-value=98 Score=29.10 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=12.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEE
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLT 145 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~iv 145 (307)
|+..++|-+|.-.|=.++++|.++.++
T Consensus 95 vLv~~~G~wg~ra~D~~~r~ga~V~~v 121 (385)
T KOG2862|consen 95 VLVVSTGTWGQRAADCARRYGAEVDVV 121 (385)
T ss_pred EEEEEechHHHHHHHHHHhhCceeeEE
Confidence 444444444444444444444444444
No 308
>PRK08017 oxidoreductase; Provisional
Probab=50.40 E-value=1.5e+02 Score=25.58 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=37.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
+.+|+..+|.-|.++|......|.+++++... ..+++.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 45777777999999999999999987665432 3555666667887777664
No 309
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=50.38 E-value=1.4e+02 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.+|...+|..|.+++..|+..|.+++++.+ +..+...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 34344445599999999999999998554443 4567777888998543
No 310
>PRK05839 hypothetical protein; Provisional
Probab=50.10 E-value=1.9e+02 Score=27.13 Aligned_cols=81 Identities=9% Similarity=-0.089 Sum_probs=44.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 87 MFQPTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMK-GYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 87 ~~nptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+-.+.|....|.+..-... .+.|. +.+ ..|+..+++..+..++..+..+ +-.-.|++|.-.-..-...++.+|++
T Consensus 56 Y~~~~G~~~lr~aia~~l~-~~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 132 (374)
T PRK05839 56 YPKSAGEESLREAQRGFFK-RRFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAK 132 (374)
T ss_pred CCCCCCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCE
Confidence 3334477788865543221 12231 333 3477777777776655444332 12234555543444445556789999
Q ss_pred EEEeCC
Q 021775 165 LILTDP 170 (307)
Q Consensus 165 V~~v~~ 170 (307)
++.++-
T Consensus 133 v~~v~~ 138 (374)
T PRK05839 133 VLLMPL 138 (374)
T ss_pred EEEeec
Confidence 998864
No 311
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=50.04 E-value=28 Score=37.62 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=40.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---------CC---------HHHHHHHHHcCCeEEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---------TS---------LERRVTMRAFGADLIL 167 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---------~~---------~~k~~~~~~~GA~V~~ 167 (307)
+.|+..++|-+|.+.|++.++.|++++||=... .| ...+.+++.+|.+++.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 459999999999999999999999999994321 22 1346778899998753
No 312
>PRK08912 hypothetical protein; Provisional
Probab=50.03 E-value=2.2e+02 Score=26.68 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=44.7
Q ss_pred CCCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 89 QPTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 89 nptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.|....|.+...... ...|. ..+. ..|+..+++..+..++..+-.. -.-.|+++.-.-..-...++.+|++++.
T Consensus 61 ~~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 137 (387)
T PRK08912 61 PMMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALVE-PGDEVVLFQPLYDAYLPLIRRAGGVPRL 137 (387)
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhcC-CCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 34577677765543222 12232 2222 1478888888888766665432 2234555543434445567889999987
Q ss_pred eCC
Q 021775 168 TDP 170 (307)
Q Consensus 168 v~~ 170 (307)
++-
T Consensus 138 ~~~ 140 (387)
T PRK08912 138 VRL 140 (387)
T ss_pred Eec
Confidence 764
No 313
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=50.02 E-value=96 Score=28.80 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=44.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHH-HhCCCcEEcCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELL-ESTPNAFMLQQ 196 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 196 (307)
.|+..++++.+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+.++.--.+..++.. +......+++.
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 3777777777766655433 222234556654444556677889999998864322210112222222 22336677654
Q ss_pred CCChh
Q 021775 197 FSNPA 201 (307)
Q Consensus 197 ~~np~ 201 (307)
..||.
T Consensus 162 p~NPt 166 (356)
T PRK04870 162 PNNPT 166 (356)
T ss_pred CCCCC
Confidence 56663
No 314
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=49.92 E-value=1.3e+02 Score=27.33 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=35.5
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMK-GYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
|.+.+|...+|..|.+++..|+.+ |.+++.+.. +..+...++.+|++-++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~---~~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATAS---RPESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHcCCCEEE
Confidence 566455555799999999999987 988766643 34567777888885443
No 315
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.71 E-value=1.7e+02 Score=27.38 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=28.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++|..-++|..|.++|..++..|++++++=+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35888899999999999999999999999764
No 316
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.71 E-value=66 Score=28.21 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHHcCC-eEEEeCCCCChHHH
Q 021775 102 MLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL---ERRVTMRAFGA-DLILTDPAKGMGGT 177 (307)
Q Consensus 102 ~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~---~k~~~~~~~GA-~V~~v~~~~~~~~~ 177 (307)
++.+..+.=.++||.+ |.+-++| .|...|..|+..| .|+.=+..+. .-.+.++.+|- +|...-++..
T Consensus 60 ~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---- 130 (209)
T COG2518 60 MVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---- 130 (209)
T ss_pred HHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc----
Confidence 3334333334566665 8888776 3566677777777 3333332211 12333666777 4555443311
Q ss_pred HHHHHHHHHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCc
Q 021775 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231 (307)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~ 231 (307)
.||--..+|+--... ++-.++=.-+++|+. .--..|+|+|+
T Consensus 131 -----------~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 -----------KGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred -----------cCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 144333444432222 343444456789994 34578999983
No 317
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=49.62 E-value=79 Score=27.42 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=36.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..++|..|..-+......|-.++|+-|+-. ..+..+...| +|..+.+
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l~~~~-~i~~~~~ 60 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE--SELTLLAEQG-GITWLAR 60 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHHHHcC-CEEEEeC
Confidence 499999999999999999999999998888643 2333344444 5555543
No 318
>PLN02623 pyruvate kinase
Probab=49.61 E-value=2.6e+02 Score=28.54 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCeEEEEE---------CCC--CCHHHHHHHHHcCCeEEEeCCCC---Ch-HHHHHHHHHHHHhCCCc-E
Q 021775 129 ISMAFMAAMKGYKMVLTM---------PSY--TSLERRVTMRAFGADLILTDPAK---GM-GGTVKKAQELLESTPNA-F 192 (307)
Q Consensus 129 ~alA~~a~~~G~~~~ivv---------p~~--~~~~k~~~~~~~GA~V~~v~~~~---~~-~~~~~~a~~~~~~~~~~-~ 192 (307)
.-+...|+..|.++.+.. |.. +....+......|++.+....+. .| .++.+...+++++.+.. +
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 345567889999988643 321 22356777788999998887542 22 24555444444322111 1
Q ss_pred E---c---CCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 193 M---L---QQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 193 ~---~---~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
+ . ....+....+ -....+.++.+.++ .. ||+..-+|.++--+++ +.|...|+++.+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~-~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~lSr----~RP~~pI~avT~~~~ 510 (581)
T PLN02623 446 EGTTPPNLGQAFKNHMSE-MFAFHATMMANTLG--TS-IIVFTRTGFMAILLSH----YRPSGTIFAFTNEKR 510 (581)
T ss_pred cchhhhhhccccCCChHH-HHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHHHh----hCCCCCEEEECCCHH
Confidence 1 0 0101111122 34455667777774 34 9999999998755544 479999999988654
No 319
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=49.56 E-value=94 Score=29.33 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=37.4
Q ss_pred EEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHH----HHcCCeEEEeC
Q 021775 119 IIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTM----RAFGADLILTD 169 (307)
Q Consensus 119 vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~----~~~GA~V~~v~ 169 (307)
|+..+- .|.+.|++..++++|+.++++-|+.- +..-+..+ +..|+++...+
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 555544 79999999999999999999999863 33333333 34688887665
No 320
>PRK09134 short chain dehydrogenase; Provisional
Probab=49.55 E-value=1.7e+02 Score=25.51 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=36.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL--ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++....... .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568888889999999999999999887765432211 11223344577776554
No 321
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=49.54 E-value=89 Score=29.46 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=37.3
Q ss_pred EEEeeCCC--hHHHHHHHHHHHcCCeEEEEECCCC-C-HHHHH----HHHHcCCeEEEeC
Q 021775 118 TIIEPTSG--NMGISMAFMAAMKGYKMVLTMPSYT-S-LERRV----TMRAFGADLILTD 169 (307)
Q Consensus 118 ~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~-~-~~k~~----~~~~~GA~V~~v~ 169 (307)
+|+..+-+ |.+.|++..++++|++++++-|++. + ...+. ..+..|+++...+
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 36666553 8999999999999999999999863 2 22222 2355688877665
No 322
>PRK13984 putative oxidoreductase; Provisional
Probab=49.53 E-value=64 Score=32.74 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=39.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--------------C----HHHHHHHHHcCCeEEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--------------S----LERRVTMRAFGADLIL 167 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~k~~~~~~~GA~V~~ 167 (307)
+.|+..++|-.|.+.|...++.|++++|+-.... + ......++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 3488888999999999999999999998843221 1 2345678889988764
No 323
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.47 E-value=1.4e+02 Score=25.60 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=36.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+.++|..|.++|......|.+++++.....+. .....+...|.+++.+..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 3457888889999999999989999877765432111 122334556777765543
No 324
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.47 E-value=1.1e+02 Score=26.79 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=24.3
Q ss_pred CcEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTS--GNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp 147 (307)
+..+|+.++ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 444666655 58999999999999999776643
No 325
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=49.38 E-value=80 Score=29.60 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=62.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQF 197 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (307)
+|..-+.|+.|.++|..++.+|++++++-+... ..... +.... +. .++.++. ....+.--
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~--~~~~~-------~~~~~---~l-------~ell~~a-DiVil~lP 207 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPN--KDLDF-------LTYKD---SV-------KEAIKDA-DIISLHVP 207 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh--Hhhhh-------hhccC---CH-------HHHHhcC-CEEEEeCC
Confidence 488889999999999999999999888865421 11100 00111 12 2333333 44444322
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 198 SNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 198 ~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
.++. -...+..+++.++ +++.+++-+|-|..+ ..+..++++
T Consensus 208 ~t~~----t~~li~~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 208 ANKE----SYHLFDKAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred CcHH----HHHHHhHHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 3332 2334567888887 478899999999887 556666664
No 326
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.35 E-value=1.2e+02 Score=26.48 Aligned_cols=71 Identities=21% Similarity=0.141 Sum_probs=42.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-CC----HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-TS----LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~----~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|.-|.++|..-...|.+++++.... .. ....+.++..|.++..+..+ .+.++..+...+..+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 4567888889999999999999999977665321 11 12233455567776554432 123333344444433
No 327
>PRK08068 transaminase; Reviewed
Probab=49.33 E-value=1.7e+02 Score=27.64 Aligned_cols=78 Identities=9% Similarity=-0.038 Sum_probs=43.2
Q ss_pred CCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 90 PTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.|.-..|.+....... +.|. +.+.. .|+..++|..+..++..+ ..+-.-.|++|.-.-..-...++.+|++++.+
T Consensus 69 ~~g~~~lr~aia~~~~~-~~g~~~~~~~-~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i 145 (389)
T PRK08068 69 FRGYPFLKEAAADFYKR-EYGVTLDPET-EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETM 145 (389)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCCCc-cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEe
Confidence 34666677555433221 2232 33321 377777777777665433 23333456666544334455667899999887
Q ss_pred CC
Q 021775 169 DP 170 (307)
Q Consensus 169 ~~ 170 (307)
+-
T Consensus 146 ~~ 147 (389)
T PRK08068 146 PL 147 (389)
T ss_pred ec
Confidence 64
No 328
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=49.31 E-value=1.6e+02 Score=24.79 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEE
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTM 146 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 146 (307)
+.+.++..++|..|+++|......|.+++++-
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 34544455569999999999888887666654
No 329
>PRK06128 oxidoreductase; Provisional
Probab=49.31 E-value=1.8e+02 Score=26.32 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=44.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-C--CHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-T--SLERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~--~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
++.+|+.++|--|.++|......|.++++..... . .......++..|.+++.+..+ .+.++..+...+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 4568888889999999999999999887764321 1 122344566678777655432 133333444444444
No 330
>PRK08278 short chain dehydrogenase; Provisional
Probab=49.22 E-value=1.7e+02 Score=26.04 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=37.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH--------HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL--------ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--------~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|--|.++|......|.+++++.....+. .-...++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 4567788889999999999999999988876543211 11234556787766553
No 331
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=49.14 E-value=1.3e+02 Score=25.81 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=37.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+.++|.-|.+++......|.+++++...... ......++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456788888999999999999999987776543211 2233445666766655543
No 332
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=49.10 E-value=7.7 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=14.1
Q ss_pred HHHhhccc--------------C-CCCCceeee
Q 021775 6 RSFLKKRA--------------L-TCSEPMLMR 23 (307)
Q Consensus 6 ~~~~~~~~--------------c-~Cg~~l~~~ 23 (307)
++|+.|++ | .||.-|+|.
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAELEVV 35 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEEEEE
Confidence 37788886 8 888888885
No 333
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=49.07 E-value=1.9e+02 Score=27.19 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 89 QPTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 89 nptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
.+.|....|-+..-... ...|. +.+.. .|+..+++..+..++..+-. -|= .|+++.-.-..-...++.+|++++
T Consensus 66 ~~~G~~~lr~aia~~~~-~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~ 141 (388)
T PRK07366 66 LFHGTLDFREAAAQWYE-QRFGLAVDPET-EVLPLIGSQEGTAHLPLAVLNPGD--FALLLDPGYPSHAGGVYLAGGQIY 141 (388)
T ss_pred CCCCCHHHHHHHHHHHH-HhhCCcCCCcC-eEEECCCcHHHHHHHHHHhCCCCC--EEEEcCCCCcchHHHHHhcCCEEE
Confidence 34577667755433221 12232 33321 37777777888776655422 232 333443233333566678999998
Q ss_pred EeCCC--CChHHHHHHHHHHHHhCCCcEEcCCCCChh
Q 021775 167 LTDPA--KGMGGTVKKAQELLESTPNAFMLQQFSNPA 201 (307)
Q Consensus 167 ~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~np~ 201 (307)
.++-+ .++..-.+...+........++++..+||-
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPT 178 (388)
T PRK07366 142 PMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPT 178 (388)
T ss_pred EEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCC
Confidence 87642 112111112222222223677777666764
No 334
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=48.96 E-value=1e+02 Score=28.13 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEE
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~ 166 (307)
|.+.+|...+|..|.+++..|+.+|.+++++... .+...++.+|++-+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~ 210 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDV 210 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceE
Confidence 6665555557999999999999999986665432 36667788887433
No 335
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.94 E-value=1.6e+02 Score=26.27 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=39.3
Q ss_pred CcEEEeeCCC--hHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HHcCCeE-EEeCCCCChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSG--NMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM-RAFGADL-ILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~-~~~GA~V-~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
+..||+..++ .-|.++|...+..|.+++++-.......++..+ +..|..+ +.+|- .+.++..+...+..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 4446666654 789999999999999887754321112233333 3446443 33332 2344444445555444
No 336
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.88 E-value=1.7e+02 Score=26.90 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=49.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHHcCC-e-EEEeCCC-CChHHHHHHHHHHHHhC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERR-VTMRAFGA-D-LILTDPA-KGMGGTVKKAQELLEST 188 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~-~~~~~~GA-~-V~~v~~~-~~~~~~~~~a~~~~~~~ 188 (307)
+..|||..|+--|.++|+.-++.|.+.++++...-..+++ +.++..|+ + ++...-+ .+.+++.+...+..++.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 4567777778899999999999999999999876666666 66666654 3 4443322 23455555544444444
No 337
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=48.88 E-value=2.2e+02 Score=26.31 Aligned_cols=111 Identities=8% Similarity=0.001 Sum_probs=55.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCe---EEEEECCCCCHHHHHHHHHcCC
Q 021775 88 FQPTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYK---MVLTMPSYTSLERRVTMRAFGA 163 (307)
Q Consensus 88 ~nptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~---~~ivvp~~~~~~k~~~~~~~GA 163 (307)
-.|.|.-..|.+...... ...|. ..++. .|+..+++..+.-++..+- .+-. -.|++|.-.-..-...++.+|+
T Consensus 33 ~~~~G~~~lr~aia~~~~-~~~g~~~~~~~-~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~ 109 (350)
T TIGR03537 33 PSALGTKALREAISGWFE-RRFGVKLDPDA-QVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGG 109 (350)
T ss_pred CCCCCCHHHHHHHHHHHH-HHhCCCCCCCC-cEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCC
Confidence 344577777755543321 22232 22321 3777777777665554432 2321 2555665444445555678999
Q ss_pred eEEEeCCC--CChHHHHHHHHHHHHhCCCcEEcCCCCChh
Q 021775 164 DLILTDPA--KGMGGTVKKAQELLESTPNAFMLQQFSNPA 201 (307)
Q Consensus 164 ~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~np~ 201 (307)
+++.++-. .++.-..+..++...+.....+++...||.
T Consensus 110 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPt 149 (350)
T TIGR03537 110 EPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPT 149 (350)
T ss_pred EEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCc
Confidence 99988642 122101111222222233667776556664
No 338
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.68 E-value=1.3e+02 Score=25.75 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=35.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+..+|.-|.++|......|.+++++..... .......++..++++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45677778899999999999999998766632211 1112234455566665544
No 339
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=48.67 E-value=97 Score=31.08 Aligned_cols=104 Identities=24% Similarity=0.323 Sum_probs=68.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+-|+-|+++|..++.+|++++.+=|.. +..+ ...+|++.. + .+ ++.++. ....+.-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEcc
Confidence 358888999999999999999999988876642 2222 234566432 1 22 233333 4554433
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
-.+|.+ ...+..+.+.++ +++.+++-+|.|+.+ ..+..++++
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 334332 234556888888 478999999999986 566667764
No 340
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.56 E-value=1.3e+02 Score=25.87 Aligned_cols=54 Identities=24% Similarity=0.190 Sum_probs=35.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+..+|.-|.++|......|.+++++..... .......++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 45577777799999999999999998766544321 1122334455687775544
No 341
>PRK05876 short chain dehydrogenase; Provisional
Probab=48.49 E-value=1.3e+02 Score=26.84 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=42.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456888888999999999999999987665432111 11233445567776554332 1334444444444443
No 342
>PLN02477 glutamate dehydrogenase
Probab=48.49 E-value=1.3e+02 Score=29.24 Aligned_cols=51 Identities=25% Similarity=0.149 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHH-cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 96 DRPAVAMLEDAEN-KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 96 dR~a~~~l~~a~~-~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-||..+.+..+.+ .|. .....+|+..+-||-|+.+|......|.+++.+..
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 3677777776554 443 33334589999999999999999999988887655
No 343
>PRK08303 short chain dehydrogenase; Provisional
Probab=48.39 E-value=1.5e+02 Score=27.06 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=44.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-----------CHHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-----------SLERRVTMRAFGADLILTDPA-KGMGGTVKKAQE 183 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~ 183 (307)
++.+|+..++--|.++|......|.+++++-.... -....+.+...|.+++.+..+ .+.++..+.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45677777788999999999999998777654311 112234456667766544322 234455555555
Q ss_pred HHHhC
Q 021775 184 LLEST 188 (307)
Q Consensus 184 ~~~~~ 188 (307)
..++.
T Consensus 89 ~~~~~ 93 (305)
T PRK08303 89 IDREQ 93 (305)
T ss_pred HHHHc
Confidence 55543
No 344
>PRK07806 short chain dehydrogenase; Provisional
Probab=48.39 E-value=1.8e+02 Score=25.06 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=35.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHH-HHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LER-RVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k-~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.+++......|.+++++...... ..+ ...++..|.++..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 456777888999999999999999998776543211 111 223445576665544
No 345
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=48.31 E-value=52 Score=31.60 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred CCcchhHHHHHHHHH----HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 91 TASIKDRPAVAMLED----AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 91 tGS~KdR~a~~~l~~----a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.|.+..=.|.+.+.. +++.|..-.|+ +|..-+.||.|..+|..++.+|++++++=|
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~gk-tvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLAER-TYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcCcC-EEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 466666666665543 34444433444 599999999999999999999999988855
No 346
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.15 E-value=1.5e+02 Score=25.57 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=36.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|..|.++|..-...|.+++++.....+. .....++..+.++..+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 4567788889999999999999999887776542222 22334455677765443
No 347
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=48.12 E-value=71 Score=34.82 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--------------CH----HHHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--------------SL----ERRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~~----~k~~~~~~~GA~V~~ 167 (307)
.|+.-++|..|.+.|++.++.|++++||=.... +. ..++.++.+|.+++.
T Consensus 541 kVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 499999999999999999999999998854311 11 224567788988764
No 348
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=47.99 E-value=1.1e+02 Score=31.50 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=39.0
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCe-EEEEECCC---C--CHHHHHHHHHcCCeEEE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYK-MVLTMPSY---T--SLERRVTMRAFGADLIL 167 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~k~~~~~~~GA~V~~ 167 (307)
...|+ .|+..++||.|.-+|..+.++|.+ ++++.... . ....+......|.+++.
T Consensus 320 ~~~gk-~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 320 LHPGK-KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred ccCCC-eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 33444 499999999999999999999974 77776532 1 23345555567888765
No 349
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=47.97 E-value=55 Score=31.16 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=34.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~ 171 (307)
..++..++|..|..++..+...+=.-.|++|..+-..-...+...|+++++++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 3577777777776665544322223456667655555566667789999888743
No 350
>PRK06197 short chain dehydrogenase; Provisional
Probab=47.87 E-value=1.8e+02 Score=26.24 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=26.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+.++|--|.++|..-...|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 456777778999999999888889987776553
No 351
>PRK07326 short chain dehydrogenase; Provisional
Probab=47.69 E-value=1.8e+02 Score=24.84 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=26.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.+.+|+..+|..|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45677778899999999999999999777654
No 352
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.67 E-value=1.6e+02 Score=27.44 Aligned_cols=56 Identities=21% Similarity=0.144 Sum_probs=37.0
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+...+|.+ |+...+|-.|.+++.+|+..|.+.+++... +..+...++.+|++.+.
T Consensus 175 ~~~~~~g~~-vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 175 FGLKQSGLR-GGILGLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred cccCCCCCe-EEEEcccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 344456666 444577999999999999999986555432 22333445679996443
No 353
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.40 E-value=2.1e+02 Score=25.65 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=38.7
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
.+.+.+|.+ |+...+|..|.+++..|+..|.+++++.+ +..+.+.++.+|++.++
T Consensus 155 ~~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 345667666 54557788999999999999998655543 34566767777876543
No 354
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=47.39 E-value=1.2e+02 Score=27.95 Aligned_cols=49 Identities=31% Similarity=0.410 Sum_probs=36.1
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.++.+.+|...+|..|.+++..|+.+|.+.+.+. . ..|...++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 4666655555569999999999999999876554 2 26777778899843
No 355
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=47.32 E-value=37 Score=32.39 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT 150 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 150 (307)
+|-.-++|..|+-+|.+|+++|++++++-|...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 488889999999999999999999999988643
No 356
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=47.30 E-value=91 Score=30.25 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAF 192 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 192 (307)
..|. +|+..+.|+-|+.+|..++.+|.+++++=. .+.+.......|+++. + .++ ..+.. ..+
T Consensus 193 l~Gk-~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~---dp~r~~~A~~~G~~v~--~----lee-------al~~a-DVV 254 (406)
T TIGR00936 193 IAGK-TVVVAGYGWCGKGIAMRARGMGARVIVTEV---DPIRALEAAMDGFRVM--T----MEE-------AAKIG-DIF 254 (406)
T ss_pred CCcC-EEEEECCCHHHHHHHHHHhhCcCEEEEEeC---ChhhHHHHHhcCCEeC--C----HHH-------HHhcC-CEE
Confidence 4445 499999999999999999999998665432 2234455566787653 1 222 12222 333
Q ss_pred EcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhH
Q 021775 193 MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGT 234 (307)
Q Consensus 193 ~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~ 234 (307)
+.--.++ ..+..+.+.++ ++..+++-+|.+..
T Consensus 255 -ItaTG~~-------~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 255 -ITATGNK-------DVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred -EECCCCH-------HHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 3222222 23444667776 35678888887654
No 357
>PRK06138 short chain dehydrogenase; Provisional
Probab=47.12 E-value=1.5e+02 Score=25.50 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=40.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|-.|.++|......|.+++++...... ......+. .|.++..+..+ .+.++..+...++.+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456888888999999999988899887666533211 11222233 46666554432 233344444444443
No 358
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=47.09 E-value=74 Score=29.26 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=45.7
Q ss_pred ccCCC-eEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC
Q 021775 75 EGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT 150 (307)
Q Consensus 75 ~~~g~-~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 150 (307)
+..|. |-.++.++-.-.|-+.|-............+...+|+ .++..++|-+++|++++.+..|.+-+.|+.++.
T Consensus 85 ~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~-~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 85 RLIGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGK-RVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHhCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCC-EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 34564 6555554344557777754443322221111222233 499999999999999999999986666666543
No 359
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.05 E-value=1.4e+02 Score=27.29 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=37.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
..+.+.+|.+.++ ..+|-.|.++...|+..|...++.+. .+..+...++.+|++-
T Consensus 161 ~~~~~~~~~~VlI-~g~g~vg~~~iqlak~~g~~~v~~~~--~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 161 ELAGIKPGSTVAV-IGAGPVGLCAVAGARLLGAARIIAVD--SNPERLDLAKEAGATD 215 (347)
T ss_pred hhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEe--CCHHHHHHHHHhCCcE
Confidence 3455667777555 45688899999999999974444442 3457777778888643
No 360
>PRK07890 short chain dehydrogenase; Provisional
Probab=46.97 E-value=1.4e+02 Score=25.97 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
+++.+|+.++|.-|.++|......|.+++++-..... ..-...++..|.++..+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 3566888888999999999999999987766532111 112233344566665443
No 361
>PRK07677 short chain dehydrogenase; Provisional
Probab=46.88 E-value=1.4e+02 Score=25.85 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=34.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLE-RRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++-....... ....++..+.++..+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45678888899999999999999997666543211111 1223444566665543
No 362
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.86 E-value=1.5e+02 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
+++.+|+..+|.-|.++|......|.+++++-..... ..-...++..|.++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 3566788888999999999998899987776553211 112233455675554443
No 363
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=46.50 E-value=1.5e+02 Score=25.57 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLE-RRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+..+|.-|.++|......|.+++++........ ....++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45678888899999999999999998777654321111 12234455666655543
No 364
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=46.44 E-value=1.3e+02 Score=27.52 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHHcCCeEEEe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLILT 168 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~k~~~~~~~GA~V~~v 168 (307)
+.+.+|.+.+|...+|..|.+++..|+.+|.+++++..... -..+...++.+|++-++.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 44566666444445699999999999999998777665321 124566667788865443
No 365
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=46.41 E-value=1.5e+02 Score=27.83 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=36.7
Q ss_pred EEeeCCC--hHHHHHHHHHHHcCCeEEEEECCCC-CHH-HH----HHHHHcCCeEEEeC
Q 021775 119 IIEPTSG--NMGISMAFMAAMKGYKMVLTMPSYT-SLE-RR----VTMRAFGADLILTD 169 (307)
Q Consensus 119 vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~-~~~-k~----~~~~~~GA~V~~v~ 169 (307)
|+..+-+ |.+.|++.+++++|+.++++.|++. +.. .+ +..+..|+++...+
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 159 YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6655554 7899999999999999999999863 222 22 12345788887765
No 366
>PLN03139 formate dehydrogenase; Provisional
Probab=46.38 E-value=2.5e+02 Score=27.01 Aligned_cols=106 Identities=10% Similarity=0.106 Sum_probs=66.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|...+.|+.|+.+|..++.+|++++++=+...+.. .....|++. +. +++ ++.++. ....++-
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~---~~~~~g~~~--~~---~l~-------ell~~s-DvV~l~l 263 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE---LEKETGAKF--EE---DLD-------AMLPKC-DVVVINT 263 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---hHhhcCcee--cC---CHH-------HHHhhC-CEEEEeC
Confidence 3588889999999999999999999876543322222 223445432 21 122 233333 4555443
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
-.++.+ ..-+..|++.++ +++.+++-+|-|+.+ ..+.+++++
T Consensus 264 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 264 PLTEKT----RGMFNKERIAKM--KKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred CCCHHH----HHHhCHHHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc
Confidence 233332 334567888888 478999999999987 455666654
No 367
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=46.37 E-value=95 Score=28.90 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCcEEEeeC-CChHHHHHHHHHHHcCCeEEEEECCCCC
Q 021775 115 GKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTS 151 (307)
Q Consensus 115 g~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~~ 151 (307)
|.+ |+..+ .+|.+.|++..++++|+.++++-|++.+
T Consensus 153 g~~-va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQ-LTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCE-EEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 344 44443 4899999999999999999999998754
No 368
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=46.37 E-value=59 Score=31.23 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=42.0
Q ss_pred CCCcchhHHHHHHHHH----HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 90 PTASIKDRPAVAMLED----AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~----a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
-.|.+..-.|.+.+.. +++.|..-.|+ +|..-+.||-|..+|..++.+|++++.+=|
T Consensus 87 apg~na~aVAE~~~~~lL~l~r~~g~~L~gk-tvGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 87 APGCNAIAVVEYVFSSLLMLAERDGFSLHDR-TVGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred CCCcCchHHHHHHHHHHHHHhccCCCCcCCC-EEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 3466677777766653 33344333344 599999999999999999999999998855
No 369
>PRK06194 hypothetical protein; Provisional
Probab=46.28 E-value=1.7e+02 Score=25.96 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=42.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
.+.+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..+ .+.++..+...+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456888888999999999999999987665432111 12233344457777655433 233333333344333
No 370
>PRK09072 short chain dehydrogenase; Provisional
Probab=46.27 E-value=1.3e+02 Score=26.25 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.+.+|+.++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 456788888999999999999999987776543
No 371
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=46.22 E-value=2.7e+02 Score=26.53 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=76.6
Q ss_pred HHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHH
Q 021775 105 DAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQEL 184 (307)
Q Consensus 105 ~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~ 184 (307)
.+...++.++|.+ |+...-|--|.|.-..|+..|-.-+|-+. ..+.|+.+.+.+||+=.+-+.+
T Consensus 176 av~nta~v~~G~t-vaV~GlGgVGlaaI~gA~~agA~~IiAvD--~~~~Kl~~A~~fGAT~~vn~~~------------- 239 (366)
T COG1062 176 AVVNTAKVEPGDT-VAVFGLGGVGLAAIQGAKAAGAGRIIAVD--INPEKLELAKKFGATHFVNPKE------------- 239 (366)
T ss_pred HhhhcccCCCCCe-EEEEeccHhHHHHHHHHHHcCCceEEEEe--CCHHHHHHHHhcCCceeecchh-------------
Confidence 3445556777765 99999999999999999999998888887 4678999999999954333211
Q ss_pred HHhCCCcEEcCCCCChhHHHHHHHHHHHHHHHhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 185 LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG-QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 185 ~~~~~~~~~~~~~~np~~~~~G~~t~~~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
. + .+. |.++++.+ ..|+.|-.+|+-..+..-....+. +-..-++||-+.+.
T Consensus 240 ------------------~--~--~vv-~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~ 291 (366)
T COG1062 240 ------------------V--D--DVV-EAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQ 291 (366)
T ss_pred ------------------h--h--hHH-HHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 0 0 111 22333322 478888888877766554444444 55566777766554
No 372
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=46.17 E-value=1.3e+02 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 111 LISPGKTTIIEPTSGNMGISMAFMAAMKG-YKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 111 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G-~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
.+.+|.+.+|. .+|..|.+++..|+..| .+++++.. +..+...++.+|++-
T Consensus 164 ~~~~~~~vlI~-g~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~ 215 (340)
T cd05284 164 YLDPGSTVVVI-GVGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADH 215 (340)
T ss_pred cCCCCCEEEEE-cCcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcE
Confidence 34556664554 47779999999999999 77665533 346777778888744
No 373
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=46.14 E-value=1.1e+02 Score=25.82 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcE
Q 021775 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAF 192 (307)
Q Consensus 113 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 192 (307)
-.|+ .++..+=|+-|+++|..++.+|.+++|+- +.+.+..+....|-+|... ++ .+++. ..
T Consensus 21 l~Gk-~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e---~DPi~alqA~~dGf~v~~~------~~-------a~~~a-di- 81 (162)
T PF00670_consen 21 LAGK-RVVVIGYGKVGKGIARALRGLGARVTVTE---IDPIRALQAAMDGFEVMTL------EE-------ALRDA-DI- 81 (162)
T ss_dssp -TTS-EEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-H------HH-------HTTT--SE-
T ss_pred eCCC-EEEEeCCCcccHHHHHHHhhCCCEEEEEE---CChHHHHHhhhcCcEecCH------HH-------HHhhC-CE-
Confidence 3444 48899999999999999999998887764 4567777777788887532 22 12222 33
Q ss_pred EcCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCch
Q 021775 193 MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232 (307)
Q Consensus 193 ~~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~G 232 (307)
++.--.|.. .+-.|.++|++ -+.|++.+|.-
T Consensus 82 ~vtaTG~~~-------vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 82 FVTATGNKD-------VITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp EEE-SSSSS-------SB-HHHHHHS---TTEEEEESSSS
T ss_pred EEECCCCcc-------ccCHHHHHHhc--CCeEEeccCcC
Confidence 333222322 23457788883 57888888854
No 374
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.10 E-value=78 Score=33.16 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCe-EEEEECCC---C--CHHHHHHHHHcCCeEEEe
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYK-MVLTMPSY---T--SLERRVTMRAFGADLILT 168 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~k~~~~~~~GA~V~~v 168 (307)
+|+..++||.|.-+|..+.++|.+ ++++.... . ....+..++..|.+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 499999999999999999999997 88886542 1 223445667788887653
No 375
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=46.06 E-value=79 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHc-CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 97 RPAVAMLEDAENK-NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 97 R~a~~~l~~a~~~-g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
+|....+..+.+. +......++|+.-+.||-|..+|..-...|.+++.+..
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD 63 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD 63 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 4556666665544 43222345689999999999999999999999888854
No 376
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=46.05 E-value=2.1e+02 Score=25.17 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=47.2
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCC
Q 021775 120 IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSN 199 (307)
Q Consensus 120 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 199 (307)
|+..|--...++...++.++ ++.|=.-.-.+++...+....||+.++.++. + ....+.+.++ +..++....+
T Consensus 44 ITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~---~---~ev~~~a~~~-~ip~~PG~~T 115 (211)
T COG0800 44 ITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL---N---PEVAKAANRY-GIPYIPGVAT 115 (211)
T ss_pred EecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC---C---HHHHHHHHhC-CCcccCCCCC
Confidence 45566777778888888877 4433222334777888888889988888763 1 2223334444 6677766666
Q ss_pred hhH
Q 021775 200 PAN 202 (307)
Q Consensus 200 p~~ 202 (307)
|.-
T Consensus 116 ptE 118 (211)
T COG0800 116 PTE 118 (211)
T ss_pred HHH
Confidence 543
No 377
>PRK07035 short chain dehydrogenase; Provisional
Probab=46.03 E-value=1.6e+02 Score=25.53 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=35.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456888888999999999999999987776543211 122333445566655443
No 378
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.92 E-value=2.3e+02 Score=25.62 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=38.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+...+.+|.+.+|. ++|..|.+++..|+..|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44556677765555 67899999999999999985444433 45667777888886
No 379
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=45.91 E-value=2e+02 Score=24.82 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCc----hhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 206 HFETTGPEIWEDTMGQVDIFVMGIGS----GGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 206 G~~t~~~Ei~~q~~~~~d~vv~pvG~----Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
.|...-.+++++. .||.|++|... |..+++...+.-....-.-++.++.++.
T Consensus 95 ~~a~al~~~i~~~--~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~~ 150 (202)
T cd01714 95 ATAKALAAAIKKI--GVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEGG 150 (202)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeCC
Confidence 5555666777775 38999999666 6666665555444444556777765543
No 380
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.90 E-value=1.3e+02 Score=25.99 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=27.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+..+|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566778888999999999999999987766543
No 381
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=45.89 E-value=2e+02 Score=25.14 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL--ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+.++|.-|.++|......|.+++++.....+. .....++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 4568888889999999999999999887765533221 22334555677765543
No 382
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.76 E-value=2e+02 Score=24.95 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=43.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|--|.++|......|.+++++.... ..+...++..+...+.+|-. +.++..+...++.++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 4567888889999999999999999877654432 33444555556666666543 344444444444443
No 383
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=45.76 E-value=79 Score=29.84 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=37.5
Q ss_pred EEEeeCCC--hHHHHHHHHHHHcCCeEEEEECCCC-CH-HHH----HHHHHcCCeEEEeC
Q 021775 118 TIIEPTSG--NMGISMAFMAAMKGYKMVLTMPSYT-SL-ERR----VTMRAFGADLILTD 169 (307)
Q Consensus 118 ~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~-~~-~k~----~~~~~~GA~V~~v~ 169 (307)
+|+..+-+ |.+.|+..+++++|+.++++.|+.. +. ..+ ...+..|+++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 36666554 7899999999999999999999863 22 222 22445788887765
No 384
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.66 E-value=2.8e+02 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=35.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-cCCeEEEeC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRA-FGADLILTD 169 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~-~GA~V~~v~ 169 (307)
|+..+.|+.|+++|......|.+++++-. ++.+...++. .|.+++.-+
T Consensus 3 viIiG~G~ig~~~a~~L~~~g~~v~vid~---~~~~~~~~~~~~~~~~~~gd 51 (453)
T PRK09496 3 IIIVGAGQVGYTLAENLSGENNDVTVIDT---DEERLRRLQDRLDVRTVVGN 51 (453)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEC---CHHHHHHHHhhcCEEEEEeC
Confidence 67778899999999999999999876643 3455666654 666666544
No 385
>PRK06436 glycerate dehydrogenase; Provisional
Probab=45.64 E-value=1.7e+02 Score=27.08 Aligned_cols=101 Identities=11% Similarity=0.177 Sum_probs=64.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+-||-|+++|..++.+|++++++-+...+ .|+.... . +. .++.++. ....+.-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~~-~---~l-------~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSIY-M---EP-------EDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCccccc-C---CH-------HHHHhhC-CEEEECC
Confidence 45888999999999999999999998887653111 1322111 1 12 2333443 4444433
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
-.++. -+..+..+.++++ ++..+++-+|.|+.. ..+..++++
T Consensus 182 p~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 182 PLTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 33333 2345667888888 468999999999886 445556654
No 386
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.60 E-value=1.4e+02 Score=25.61 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=41.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|..|.++|......|.+++++....... .....++..+.++..+..+ .+.++......+..++
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3457777789999999999999999877765432111 1222334456666544332 2333443444444443
No 387
>PRK06701 short chain dehydrogenase; Provisional
Probab=45.56 E-value=2.2e+02 Score=25.69 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=37.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 455777788999999999999999998776554222 223344566677775544
No 388
>PRK06181 short chain dehydrogenase; Provisional
Probab=45.54 E-value=1.4e+02 Score=26.01 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=35.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
+.+|+..+|..|.++|......|.+++++...... ......+...|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45788888999999999999999987776643211 112334455677765543
No 389
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=45.53 E-value=1.9e+02 Score=26.79 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=65.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+-||-|+.+|..++.+|++++++=+..... -|.+.. .. . ....++.++. ....+.-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~~-~~----~----~~l~e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQSF-AG----R----EELSAFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCceee-cc----c----ccHHHHHhcC-CEEEECC
Confidence 358889999999999999999999998876532110 122211 11 1 1122333443 3444332
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHhc
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKSQ 245 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~~ 245 (307)
-.++. -.+.+..+.++++ +++.+++-+|-|+.+ -.+..++++-
T Consensus 199 Plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 199 PNTPE----TVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred CCCHH----HHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhcC
Confidence 23333 2345667888888 478999999999986 5666677653
No 390
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=45.53 E-value=2.3e+02 Score=25.99 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=43.5
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
.+.+.++||.+.++-+.+|--|..+-..++..|..++.... ..+|.++.+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 46778899998888888899999998888888876555443 45788888888886
No 391
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.39 E-value=89 Score=23.86 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC--CCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHHH
Q 021775 128 GISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP--AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~~ 205 (307)
...+|.+.++.|+++.++=.......-.+.++....+++.+.. ..++....+.++...+..++...+-...
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~------- 89 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP------- 89 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES-------
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC-------
Confidence 4456677777899888663332234455667788888887654 2234455555555444444433332211
Q ss_pred HHHHHHHH-HHHhhCCCCCEEEEecCc
Q 021775 206 HFETTGPE-IWEDTMGQVDIFVMGIGS 231 (307)
Q Consensus 206 G~~t~~~E-i~~q~~~~~d~vv~pvG~ 231 (307)
+.|..+| +++.. ...|+++..=|-
T Consensus 90 -~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 90 -HATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp -SSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred -chhcChHHHhccC-cCcceecCCChH
Confidence 1133333 34332 247888776553
No 392
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=45.39 E-value=2.3e+02 Score=25.48 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe-------CCCCChHHHHHHHHHHHHhCCCcEEcC--CC-
Q 021775 128 GISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT-------DPAKGMGGTVKKAQELLESTPNAFMLQ--QF- 197 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v-------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~- 197 (307)
..+++.+-++.|.+++++ .-..--.++..+ +|.+=..| .+.-.+.++.-. -++.++.|++. |-
T Consensus 20 tAnig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIk----DKr~~nL~lLPAsQtr 92 (272)
T COG2894 20 TANIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIK----DKRLENLFLLPASQTR 92 (272)
T ss_pred hHHHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhc----cccCCceEeccccccc
Confidence 344555556678887665 444544555554 67764433 222122222211 12233555442 22
Q ss_pred -CChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhc--CCCcEEEEEeCCCCc
Q 021775 198 -SNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQ--NPNVKIYGVEPAESN 260 (307)
Q Consensus 198 -~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~--~~~~~vigVe~~~~~ 260 (307)
.|....| |.+.+..|+-+ ..+|||++=+ -+||=++|+.. ..+--|+.+.|+-++
T Consensus 93 dKdalt~E-~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 93 DKDALTPE-GVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred CcccCCHH-HHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccc
Confidence 2344565 65555544433 3699999854 55677777643 235567778888775
No 393
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=45.16 E-value=1.8e+02 Score=25.44 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=34.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-HcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR-AFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~-~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++-. ...+++.+. .+|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r---~~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK---SAAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhhcCCceEEEE
Confidence 45678888899999999999999998776533 223334343 3455555443
No 394
>PRK06500 short chain dehydrogenase; Provisional
Probab=45.13 E-value=1.9e+02 Score=24.76 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHH-HHHHcCCeEEEe
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV-TMRAFGADLILT 168 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~-~~~~~GA~V~~v 168 (307)
++.+|+..+|..|.++|......|.+++++... ..++. ..+.+|.++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~ 57 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVI 57 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEE
Confidence 456788888999999999999999987665432 22222 234457776544
No 395
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=45.09 E-value=29 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=26.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 149 (307)
++..++|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678899999999999999999999998863
No 396
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=45.05 E-value=1.6e+02 Score=25.52 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHH
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLE 186 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~ 186 (307)
++.+|+..+|.-|.++|......|.+++++-..... ......++..+.++..+..+ .+.++..+...++.+
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 456888888999999999999999887765432111 11223445556666554332 133333333444433
No 397
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=44.97 E-value=1.6e+02 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=49.1
Q ss_pred EeCCCCCCCcchhHHHHHHHHHH-HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHH
Q 021775 84 KQEMFQPTASIKDRPAVAMLEDA-ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRA 160 (307)
Q Consensus 84 K~E~~nptGS~KdR~a~~~l~~a-~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~ 160 (307)
+-++.-||.+ |+|.+..-+... .-.| . ++...-+|+-+.++=+.++ |...++++..+.. ..-.+.++.
T Consensus 18 ~~~~~RPT~d-rVREalFNil~~~~i~g-----~-~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 18 DGPGTRPTTD-RVREALFNILAPDEIEG-----A-RVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCCCcCCCch-HHHHHHHHhccccccCC-----C-EEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHH
Confidence 3356778877 888776555443 1223 3 5999999888877766664 6666777766433 233455677
Q ss_pred cC--CeEEEeCC
Q 021775 161 FG--ADLILTDP 170 (307)
Q Consensus 161 ~G--A~V~~v~~ 170 (307)
+| .++..+..
T Consensus 89 l~~~~~~~~~~~ 100 (187)
T COG0742 89 LGLEGEARVLRN 100 (187)
T ss_pred hCCccceEEEee
Confidence 77 66666653
No 398
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.97 E-value=2e+02 Score=24.71 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=27.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.+.+|+.++|..|.++|......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888999999999999999996666543
No 399
>PRK06841 short chain dehydrogenase; Provisional
Probab=44.93 E-value=1.9e+02 Score=24.94 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=25.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
++.+|+..+|--|.++|......|.+++++-.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45577777899999999999999998766554
No 400
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.81 E-value=1.8e+02 Score=25.77 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=38.0
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 114 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+|.+.++...+|..|.+++..|+.+|.+++.... ...|...++.+|+....
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4666566666699999999999999998555433 45788888889986433
No 401
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=44.76 E-value=1.8e+02 Score=25.21 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
++.+|+.++|--|.++|......|.+++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 45688888899999999999999998777644
No 402
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=44.73 E-value=58 Score=26.77 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=36.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
+|...+|+.|..++......|.++++++....+..+ ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 566678999999999999999999999986443322 56677766653
No 403
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=44.68 E-value=1.6e+02 Score=29.14 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCcEEEeeC-CChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC-C
Q 021775 94 IKDRPAVAMLEDAENKNLISPGKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP-A 171 (307)
Q Consensus 94 ~KdR~a~~~l~~a~~~g~~~~g~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~-~ 171 (307)
..+..+...+..|...+ .+.|++.| ||++++.+|.+ +-..+.+++.|..... .+....+|..-+.++. .
T Consensus 357 ~~~~ia~~a~~~a~~~~-----akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~v~--R~L~L~wGV~Pil~~~~~ 427 (473)
T TIGR01064 357 ITEAIALSAVEAAEKLD-----AKAIVVLTESGRTARLLSKY--RPNAPIIAVTPNERVA--RQLALYWGVFPFLVDEEP 427 (473)
T ss_pred hHHHHHHHHHHHHhhcC-----CCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHHHH--HHhhccCCcEEEEeCCCC
Confidence 34555555556666555 34455555 58888887776 5567777777742222 2222345776665543 1
Q ss_pred CChHHHHHHHHHHHH
Q 021775 172 KGMGGTVKKAQELLE 186 (307)
Q Consensus 172 ~~~~~~~~~a~~~~~ 186 (307)
.+.++....+.+.++
T Consensus 428 ~~~~~~i~~a~~~l~ 442 (473)
T TIGR01064 428 SDTEARVNKALELLK 442 (473)
T ss_pred CCHHHHHHHHHHHHH
Confidence 123333444444443
No 404
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=44.67 E-value=1.2e+02 Score=22.05 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.9
Q ss_pred EEeeCCChHHHHHHHHHHHcC---CeEEEEECCCCCHHHHHHH-HHcCCeEEE
Q 021775 119 IIEPTSGNMGISMAFMAAMKG---YKMVLTMPSYTSLERRVTM-RAFGADLIL 167 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G---~~~~ivvp~~~~~~k~~~~-~~~GA~V~~ 167 (307)
|..-++||.|.+++......| .++.++... .+++.+.+ +.+|+.+..
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEES
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhcccccc
Confidence 445589999999999999999 777765432 44555554 677876654
No 405
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.64 E-value=1.4e+02 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+.++|--|.++|......|.++++...... .......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 45677788899999999999999998776553321 1233455666777765543
No 406
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.64 E-value=2.4e+02 Score=25.44 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=36.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
|...++|+.|..+|...+..|.+++++.. ..+++.++..|..+..
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r----~~~~~~~~~~g~~~~~ 47 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR----PKRAKALRERGLVIRS 47 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec----HHHHHHHHhCCeEEEe
Confidence 77789999999999999999999888865 3566667777765543
No 407
>PRK05867 short chain dehydrogenase; Provisional
Probab=44.52 E-value=1.6e+02 Score=25.63 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=41.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|.-|.++|......|.+++++-..... ......++..|.++..+..+ .+.++..+...+..++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999987665432111 11223345567666554322 2333333444444433
No 408
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=44.44 E-value=1.6e+02 Score=25.96 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=36.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHcC
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYK-MVLTMPSYTSLERRVTMRAFG 162 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~k~~~~~~~G 162 (307)
..+.+.+|.+.++. ..|..|.++...|+.+|.+ ++++ . .+..+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~-~--~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV-D--PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE-C--CCHHHHHHHHHcC
Confidence 34566777774555 6799999999999999988 4443 2 3556677778888
No 409
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=44.38 E-value=47 Score=32.83 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=39.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--------------C----HHHHHHHHHcCCeEEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--------------S----LERRVTMRAFGADLIL 167 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~k~~~~~~~GA~V~~ 167 (307)
..|+..++|-.|.+.|.+.++.|+++++|-.... + ...++.++.+|.+++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3599999999999999999999999999853211 1 1235667888988864
No 410
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=44.25 E-value=1.9e+02 Score=25.27 Aligned_cols=69 Identities=10% Similarity=0.274 Sum_probs=40.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM-RAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~-~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++-.. ..+.+.+ ..++.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 456788888999999999999999987665432 2333333 2345444433321 2334444444444444
No 411
>PRK07814 short chain dehydrogenase; Provisional
Probab=44.12 E-value=1.6e+02 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=34.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEe
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILT 168 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v 168 (307)
.+.+|+.++|--|.++|......|.+++++...... ......++..|..+..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 566888888999999999999999987776543111 11122334446555543
No 412
>PRK08265 short chain dehydrogenase; Provisional
Probab=43.84 E-value=2e+02 Score=25.17 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=40.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERR-VTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~-~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+.++|--|.++|......|.+++++-.. ..+. ...+..+.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDID---ADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999987666432 2222 2233446665554322 1233333334444343
No 413
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.78 E-value=2e+02 Score=24.81 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=36.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTD 169 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~ 169 (307)
+.+|+..+|.-|.++|..-...|.+++++.....+ ......++..+.++..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEE
Confidence 45788888999999999999999988776543221 223344455677665554
No 414
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=43.72 E-value=1.3e+02 Score=27.63 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 149 (307)
+++.-++|.+++|++++....|++-+.++..+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 58888899999999999999999766666654
No 415
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=43.41 E-value=2e+02 Score=27.95 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHcCCeEEEEECCC
Q 021775 124 SGNMGISMAFMAAMKGYKMVLTMPSY 149 (307)
Q Consensus 124 sGN~g~alA~~a~~~G~~~~ivvp~~ 149 (307)
-|.+..+|+.+-++.|.++.|++|.-
T Consensus 19 l~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 19 LADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 38889999999999999999999964
No 416
>PRK08264 short chain dehydrogenase; Validated
Probab=43.36 E-value=1.1e+02 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=26.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCC-eEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGY-KMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp 147 (307)
.+.+|+..+|.-|.++|......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4557788889999999999999998 7666654
No 417
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.34 E-value=2.1e+02 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=27.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.+.+|+.++|--|.++|......|.+++++-..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888999999999999999988776543
No 418
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.32 E-value=2.4e+02 Score=25.04 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+.+|.+.++...+|..|.+++..++..|.+++++.+ + .+...++.+|++-++
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4566677776555555799999999999999998766543 3 566667778875443
No 419
>PRK12414 putative aminotransferase; Provisional
Probab=43.20 E-value=2.8e+02 Score=26.09 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=41.0
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEcC
Q 021775 118 TIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLESTPNAFMLQ 195 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 195 (307)
.|+..++|..|..++..+-. -|=+ |+++.-.-..-...++.+|++++.++-+. ++.--.+...+..+.....++++
T Consensus 92 ~i~it~g~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 169 (384)
T PRK12414 92 EVTVIASASEGLYAAISALVHPGDE--VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVN 169 (384)
T ss_pred cEEEECChHHHHHHHHHHhcCCCCE--EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEc
Confidence 37777788887776665432 2333 44443222233445667899998876431 12101112222222233566665
Q ss_pred CCCCh
Q 021775 196 QFSNP 200 (307)
Q Consensus 196 ~~~np 200 (307)
...||
T Consensus 170 ~p~NP 174 (384)
T PRK12414 170 TPHNP 174 (384)
T ss_pred CCCCC
Confidence 55565
No 420
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=43.00 E-value=2e+02 Score=25.31 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=36.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+.+.+|.+.+|...+|..|.+++..++..|.+++++.+. . +...++.+|+.
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~~ 190 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGAD 190 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCCC
Confidence 446666664454446999999999999999997766543 2 55556778863
No 421
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=42.94 E-value=1.9e+02 Score=25.13 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++....... .-...++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 5667888889999999999999999877765432111 11233455676665443
No 422
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.90 E-value=2.2e+02 Score=25.91 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=54.3
Q ss_pred EeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcC
Q 021775 84 KQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFG 162 (307)
Q Consensus 84 K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~G 162 (307)
=+=+.||-.. +|....+.++.+.|. +.++.+=- =.+...+-.+|++.|+..+.+++.+++..++..+....
T Consensus 99 lm~Y~Npi~~---~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 99 LMTYYNPIFN---YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred EEEeccHHHH---hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 3445566432 455667778888874 34555433 55667788888899999999999888888888887776
Q ss_pred -CeEEEeC
Q 021775 163 -ADLILTD 169 (307)
Q Consensus 163 -A~V~~v~ 169 (307)
.-|+.+.
T Consensus 171 ~GFiY~vs 178 (265)
T COG0159 171 SGFIYYVS 178 (265)
T ss_pred CCcEEEEe
Confidence 5566554
No 423
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.85 E-value=1.8e+02 Score=25.32 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeCC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTDP 170 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~~ 170 (307)
.+.+|+..+|--|.++|......|.+++++....... .....++..+.++..+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4567888889999999999999999876654321111 112234456777665543
No 424
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=42.78 E-value=1.8e+02 Score=25.70 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc---CCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCCCChhHHH
Q 021775 128 GISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF---GADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTR 204 (307)
Q Consensus 128 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~---GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~np~~~~ 204 (307)
|.+.|.+.+.+|+++.++-++..+...+..+..+ |.+|....+.. .+......+.++.-....+..|.+-..
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~---~r~~l~~~L~~~G~~v~~~~~Y~~~~~-- 160 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNG---GREVLEEKLEERGAEVREVEVYRTEPP-- 160 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCC---chHHHHHHHHhCCCEEEEEeeeeecCC--
Confidence 5677888889999887765556677777777777 67777665432 122233444443222333445543221
Q ss_pred HHHHHHHHHH-HHhhCCCCCEEEEecCchhHHHHHHHHHHhcCC----CcEEEEEeCCCC
Q 021775 205 VHFETTGPEI-WEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNP----NVKIYGVEPAES 259 (307)
Q Consensus 205 ~G~~t~~~Ei-~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~----~~~vigVe~~~~ 259 (307)
.+. ...++ ..+. ..+|+|+...+ .++-.+...+...++ +.+++.+=|.-+
T Consensus 161 -~~~-~~~~~~~~~~-~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta 215 (248)
T COG1587 161 -PLD-EATLIELLKL-GEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPRTA 215 (248)
T ss_pred -Ccc-HHHHHHHHHh-CCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHHHH
Confidence 122 11111 1222 46899998765 456666666665554 366676644433
No 425
>PLN02928 oxidoreductase family protein
Probab=42.74 E-value=1.1e+02 Score=28.96 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=66.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH--HHcC-CeEEEeCCCCChHHHHHHHHHHHHhCCCcEE
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM--RAFG-ADLILTDPAKGMGGTVKKAQELLESTPNAFM 193 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~--~~~G-A~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (307)
++|...+.|+-|+.+|..++.+|++++++=+.. +......+ ..-. ..+ +... . ......++.++. ....
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~-~~~~~~~~~~~~~~~~~~--~~~~--~--~~~~L~ell~~a-DiVv 231 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSW-TSEPEDGLLIPNGDVDDL--VDEK--G--GHEDIYEFAGEA-DIVV 231 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC-Chhhhhhhcccccccccc--cccc--C--cccCHHHHHhhC-CEEE
Confidence 458999999999999999999999988775431 11111100 0000 000 0000 0 011122344443 4444
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 194 LQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 194 ~~~~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
+.- |.+.+ -.+-+..|.+.+| +++++++-+|-|+.+ ..+..+++.
T Consensus 232 l~l---Plt~~-T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 232 LCC---TLTKE-TAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred ECC---CCChH-hhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 433 33333 3345677889998 478999999999987 566677764
No 426
>PRK06198 short chain dehydrogenase; Provisional
Probab=42.64 E-value=2.2e+02 Score=24.65 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=35.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL--ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|..+|......|.+.++++...... .....++..|.++..+.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4557777789999999999999999844445443211 12234556788775543
No 427
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.60 E-value=7.9 Score=21.36 Aligned_cols=6 Identities=33% Similarity=1.021 Sum_probs=3.3
Q ss_pred C-CCCCc
Q 021775 14 L-TCSEP 19 (307)
Q Consensus 14 c-~Cg~~ 19 (307)
| .||.+
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 5 56654
No 428
>PRK05957 aspartate aminotransferase; Provisional
Probab=42.59 E-value=89 Score=29.57 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~ 171 (307)
.|+..++++.|..++..+- +.-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 91 ~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 91 AIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 4787888888876655443 2212234444322122234557789999888654
No 429
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=42.48 E-value=1.9e+02 Score=26.42 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=37.4
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 112 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+|.+.+| ...|..|.+++..|+.+|++++++.+ +..+...++.+|++-++
T Consensus 167 ~~~g~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGV-VGIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 566666555 55799999999999999997655543 34566677788876543
No 430
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=42.35 E-value=37 Score=30.86 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.|+..++|=.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 3899999999999999999999999998654
No 431
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=42.24 E-value=2e+02 Score=28.90 Aligned_cols=82 Identities=11% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCCcchhHHHHHHHHHHHHc-CCCCCC-CcEEEeeCCChHHHHHHHHHH----Hc--CCeEEEEECCCCCHHHHHHHHH
Q 021775 89 QPTASIKDRPAVAMLEDAENK-NLISPG-KTTIIEPTSGNMGISMAFMAA----MK--GYKMVLTMPSYTSLERRVTMRA 160 (307)
Q Consensus 89 nptGS~KdR~a~~~l~~a~~~-g~~~~g-~~~vv~~SsGN~g~alA~~a~----~~--G~~~~ivvp~~~~~~k~~~~~~ 160 (307)
.|.|....|-+...-...++. +...+. ...|+..+++..|..++..+- .+ |=++.+..|.-.+-.....+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467887777654431122222 222221 115888899999988877651 22 3333333333223333334555
Q ss_pred cCCeEEEeCC
Q 021775 161 FGADLILTDP 170 (307)
Q Consensus 161 ~GA~V~~v~~ 170 (307)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 7899887764
No 432
>PRK07574 formate dehydrogenase; Provisional
Probab=42.21 E-value=3.2e+02 Score=26.31 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=67.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQ 196 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (307)
++|..-+.|+-|+.+|..++.+|++++.+=+...+.. ..+.+|++ ... +. .++.++. ....+.-
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~---~~~~~g~~--~~~---~l-------~ell~~a-DvV~l~l 256 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE---VEQELGLT--YHV---SF-------DSLVSVC-DVVTIHC 256 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---hHhhcCce--ecC---CH-------HHHhhcC-CEEEEcC
Confidence 3588889999999999999999999887755332222 22334542 111 12 2333443 4554443
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 021775 197 FSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTV--SGVGQYLKS 244 (307)
Q Consensus 197 ~~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 244 (307)
-.++.+ ..-+..|.+.+| ++..+++-++.|..+ ..+..+++.
T Consensus 257 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 257 PLHPET----EHLFDADVLSRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred CCCHHH----HHHhCHHHHhcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 334432 234567888988 468999999999986 456666664
No 433
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=42.16 E-value=2.1e+02 Score=24.69 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=35.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
.+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4778888999999999999999987666443211 122344566787776554
No 434
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=42.13 E-value=2.2e+02 Score=25.76 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc-CCeEEEe
Q 021775 95 KDRPAVAMLEDAENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF-GADLILT 168 (307)
Q Consensus 95 KdR~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~-GA~V~~v 168 (307)
.-+|....+.++.+.| .+.|+..=- =.....+..+|+..|+..+-+++.+++..++..+... ..-|..+
T Consensus 100 ~~~G~e~F~~~~~~aG-----vdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAG-----VDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHH-HHHHHHHHHHHT-----EEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred hccchHHHHHHHHHcC-----CCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 4456666777777777 345665543 2344566777888899888888888888888887655 3345554
No 435
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=42.10 E-value=1.8e+02 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=32.2
Q ss_pred CcEEEeeCCChHH---HHHHHHHHHcCCeEEEEECCCCCHH----HHHHHHHcCCeE
Q 021775 116 KTTIIEPTSGNMG---ISMAFMAAMKGYKMVLTMPSYTSLE----RRVTMRAFGADL 165 (307)
Q Consensus 116 ~~~vv~~SsGN~g---~alA~~a~~~G~~~~ivvp~~~~~~----k~~~~~~~GA~V 165 (307)
.+.+|.++.||.| ..+|.+....|+++.|++|...... ...+++.+|..+
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 3457777887765 4556666667999999997643322 244566666554
No 436
>PRK05717 oxidoreductase; Validated
Probab=41.99 E-value=2.3e+02 Score=24.65 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 115 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
|++.+|+-.+|.-|.++|......|.+++++-.. . .......+..+.+++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~ 62 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD-R-ERGSKVAKALGENAWFIA 62 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC-H-HHHHHHHHHcCCceEEEE
Confidence 3566888888999999999999999887766332 1 111222344565555443
No 437
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=41.86 E-value=1.1e+02 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=38.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCe-EEEEECCC-----CCHHHHHHHHHcCCeEEEe
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYK-MVLTMPSY-----TSLERRVTMRAFGADLILT 168 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~-----~~~~k~~~~~~~GA~V~~v 168 (307)
.|+..++|+.|.-+|......|.+ ++++.... .....+..++..|.+++.-
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 599999999999999988888997 88886532 1234456677888887653
No 438
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=41.86 E-value=82 Score=29.21 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHcCCCCCCCcEEEeeCC-ChHHHHHHHHHHHcCCeEEEEECCCC-CHH-HH----HHHHHcCCeEEEeC
Q 021775 107 ENKNLISPGKTTIIEPTS-GNMGISMAFMAAMKGYKMVLTMPSYT-SLE-RR----VTMRAFGADLILTD 169 (307)
Q Consensus 107 ~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~-~~~-k~----~~~~~~GA~V~~v~ 169 (307)
++.|.++ |.+ |+..+- -|.+.|++.+++++|+.++++.|++. +.. .+ ...+..|+++..++
T Consensus 140 e~~g~l~-g~k-va~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 140 EQFGDVS-KVK-LAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred HHhCCcC-CcE-EEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3445442 334 544444 57789999999999999999999863 222 22 22456788887765
No 439
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=41.75 E-value=2.4e+02 Score=24.86 Aligned_cols=52 Identities=23% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 97 RPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 97 R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
+|....+..+.+.-.......+|+..+.||-|+.+|......|.+++-+...
T Consensus 12 ~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 12 RGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred HHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4556666554433212222345888999999999999999999888766543
No 440
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=41.63 E-value=2.8e+02 Score=25.35 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=37.0
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKG-YKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G-~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
...+.+|.+.+| .++|..|.+++.+|+.+| .++++ +. .+..|...++.+|++
T Consensus 161 ~~~~~~g~~vlI-~g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAI-VGAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 334566666555 567999999999999999 55444 33 355777778888874
No 441
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.58 E-value=3.2e+02 Score=26.07 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.6
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHHc
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGY--KMVLTMPSYTSLERRVTMRAF 161 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~--~~~ivvp~~~~~~k~~~~~~~ 161 (307)
...+++|.+.+|...+|-.|...+..|+.+|. ..++++. .+..|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~--~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD--VNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc--CCHHHHHHHHHh
Confidence 34567777645555579999999999999875 2233332 456778888776
No 442
>PRK06290 aspartate aminotransferase; Provisional
Probab=41.57 E-value=2.8e+02 Score=26.55 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCCcchhHHHHHHHHHHHHcCC--CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 90 PTASIKDRPAVAMLEDAENKNL--ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.|.-..|.+..-.... ..|. +.+. ..|+..+++..+..++..+-. +-.-.|++|.-.-..-...++.+|++++.
T Consensus 80 ~~G~~~lr~aia~~~~~-~~g~~~~~~~-~~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~ 156 (410)
T PRK06290 80 DNGIQEFKEAAARYMEK-VFGVKDIDPV-TEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYN 156 (410)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCCcCCCc-ceEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEE
Confidence 35666666544332211 1232 2232 137877888888776665432 22234445543334445667789999998
Q ss_pred eCC
Q 021775 168 TDP 170 (307)
Q Consensus 168 v~~ 170 (307)
++-
T Consensus 157 v~~ 159 (410)
T PRK06290 157 LPL 159 (410)
T ss_pred Eec
Confidence 864
No 443
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=41.32 E-value=1.8e+02 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=35.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHHcCCeEEEeC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERR-VTMRAFGADLILTD 169 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~-~~~~~~GA~V~~v~ 169 (307)
+.+|+..+|-.|.+++......|.+++++........++ ..+...+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 457888889999999999999999877775542222122 22344566665544
No 444
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=41.21 E-value=3.2e+02 Score=25.95 Aligned_cols=94 Identities=16% Similarity=0.299 Sum_probs=42.4
Q ss_pred eEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChH--HHHHHHHHHHHhCCCc-E-EcCCC-CChhHHHHHHHHHHHHHH
Q 021775 141 KMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG--GTVKKAQELLESTPNA-F-MLQQF-SNPANTRVHFETTGPEIW 215 (307)
Q Consensus 141 ~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~--~~~~~a~~~~~~~~~~-~-~~~~~-~np~~~~~G~~t~~~Ei~ 215 (307)
|..|+.-++.-..--..++.+|-++.++.+...+. +..+...+..++. |. + ..+.. .||..-. -.-+.+.+
T Consensus 7 p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~-g~~~~~~~~v~~~p~~~~---v~~~~~~~ 82 (382)
T cd08187 7 PTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEA-GIEVVELGGVEPNPRLET---VREGIELC 82 (382)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHc-CCeEEEECCccCCCCHHH---HHHHHHHH
Confidence 44455554443333344556666666664322222 2234444444443 22 1 12211 2443211 12233445
Q ss_pred HhhCCCCCEEEEecCchhHHHHHHHHH
Q 021775 216 EDTMGQVDIFVMGIGSGGTVSGVGQYL 242 (307)
Q Consensus 216 ~q~~~~~d~vv~pvG~Gg~~~Gi~~~~ 242 (307)
++. ++|. |+++|+|..+ =++|+.
T Consensus 83 ~~~--~~D~-IIaiGGGS~i-D~aK~i 105 (382)
T cd08187 83 KEE--KVDF-ILAVGGGSVI-DSAKAI 105 (382)
T ss_pred HHc--CCCE-EEEeCChHHH-HHHHHH
Confidence 553 4776 6778877655 444444
No 445
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=41.07 E-value=1.5e+02 Score=25.55 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=36.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHHcCCeEEEeC
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS--LERRVTMRAFGADLILTD 169 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~k~~~~~~~GA~V~~v~ 169 (307)
+.+|+.++|.-|.++|..-.+.|.++++....+.. ......++.++.++..+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45778888999999999999999987765533221 123344566777776554
No 446
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.06 E-value=2.3e+02 Score=24.49 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HHcCCeEEEeC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM-RAFGADLILTD 169 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~-~~~GA~V~~v~ 169 (307)
.+|+..+|..|.++|......|.+++++... ..++..+ ...+.++..+.
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 52 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQ 52 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEE
Confidence 4778888999999999999999987766432 2333333 23455555443
No 447
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=41.04 E-value=82 Score=27.56 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHHHhhCCCCCEEE-EecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 021775 210 TGPEIWEDTMGQVDIFV-MGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAE 258 (307)
Q Consensus 210 ~~~Ei~~q~~~~~d~vv-~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~ 258 (307)
...||+.++ +||.|+ ..+-.||.+.=.+.-++.++++.+|+||+-.-
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 566899888 578776 33445666544455566677889999999953
No 448
>PRK05693 short chain dehydrogenase; Provisional
Probab=41.04 E-value=2.5e+02 Score=24.69 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=42.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHH
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE 186 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~ 186 (307)
+.+|+..+|-.|.++|......|.+++++... ..+...+...+.+.+.+|-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 35778888999999999999999987776543 34455555667776666643 23333333444433
No 449
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=40.86 E-value=2e+02 Score=26.23 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=45.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHH--HHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLER--RVTMRAFGADLILTDPAK-GMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k--~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~ 187 (307)
.+.|||..|+.-|.++|...++.|.+++++......-.. .+.-+.+|.+|...+-+- +.++..+...++..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 567888888999999999999999999999875322211 111234566665554331 233444444455443
No 450
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=40.84 E-value=1.2e+02 Score=31.30 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--------------C----HHHHHHHHHcCCeEEEe
Q 021775 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--------------S----LERRVTMRAFGADLILT 168 (307)
Q Consensus 117 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~k~~~~~~~GA~V~~v 168 (307)
+.|+..++|-.|.+.|...++.|++++||-.... + ...+..++.+|.++..-
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 3599999999999999999999999999864321 1 12466778899988653
No 451
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.78 E-value=36 Score=32.96 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=24.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 149 (307)
||..++|-.|.+.|.+|++.|.++.++-+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 8899999999999999999999999997654
No 452
>PRK05872 short chain dehydrogenase; Provisional
Probab=40.72 E-value=2.1e+02 Score=25.73 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=40.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HHc--CCeEEE--eCCCCChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM-RAF--GADLIL--TDPAKGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~-~~~--GA~V~~--v~~~~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. +|-. +.++..+...+..++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVT-DLAAMQAAAEEAVER 82 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCC-CHHHHHHHHHHHHHH
Confidence 566888888999999999999999986665432 2333322 333 345554 4422 344444444554444
No 453
>PRK07324 transaminase; Validated
Probab=40.69 E-value=1.1e+02 Score=28.91 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC--ChH-HHHHHHHHHHHhCCCcEEc
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK--GMG-GTVKKAQELLESTPNAFML 194 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~--~~~-~~~~~a~~~~~~~~~~~~~ 194 (307)
.|+..+++..|..++..+- ++-.-.|+++.-.-..-....+.+|++++.++-+. ++. +. +...+.........++
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~-~~l~~~~~~~~kli~i 159 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDL-DELRRLVRPNTKLICI 159 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHhCCCCCcEEEE
Confidence 3777777777777666554 22223344444333334456788999998876421 121 11 1112222223356666
Q ss_pred CCCCChh
Q 021775 195 QQFSNPA 201 (307)
Q Consensus 195 ~~~~np~ 201 (307)
+...||.
T Consensus 160 ~~p~NPt 166 (373)
T PRK07324 160 NNANNPT 166 (373)
T ss_pred eCCCCCC
Confidence 6556663
No 454
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=40.63 E-value=3.3e+02 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=15.1
Q ss_pred HHHHhhCCCCCEEEEecCchhHHHHHHHHH
Q 021775 213 EIWEDTMGQVDIFVMGIGSGGTVSGVGQYL 242 (307)
Q Consensus 213 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~ 242 (307)
+++++ .++|. |+++|+|..+ =++|++
T Consensus 73 ~~~~~--~~~D~-IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 73 SAAAR--AGPDV-IIGLGGGSCI-DLAKIA 98 (386)
T ss_pred HHHHh--cCCCE-EEEeCCchHH-HHHHHH
Confidence 44444 35675 6788887765 444444
No 455
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=40.47 E-value=1.1e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=34.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..+++..+..++..+-.-| . .|+++.-.-..-...++.+|++++.++.
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 3888888888887776542223 3 4555554555566777889999988764
No 456
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=24 Score=31.59 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=39.3
Q ss_pred CeEEEEeCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHH
Q 021775 79 AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGIS 130 (307)
Q Consensus 79 ~~l~~K~E~~nptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 130 (307)
++||=-.+++||--|+-.-+...-+..|+..| ...++..+||+--+.
T Consensus 164 tNvfGphDNfnpe~sHVlPali~r~h~ak~~g-----td~~~VwGsG~PlRq 210 (315)
T KOG1431|consen 164 TNVFGPHDNFNPENSHVLPALIHRFHEAKRNG-----TDELTVWGSGSPLRQ 210 (315)
T ss_pred ccccCCCCCCCcccccchHHHHHHHHHHHhcC-----CceEEEecCCChHHH
Confidence 47999999999999999988888888999888 456888888875443
No 457
>PRK08251 short chain dehydrogenase; Provisional
Probab=40.45 E-value=2.1e+02 Score=24.53 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=26.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+.++|..|.++|......|.+++++...
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356888888999999999999999887666543
No 458
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=40.43 E-value=84 Score=24.34 Aligned_cols=44 Identities=32% Similarity=0.375 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 210 TGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 210 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
.+.++.++++ ...||+..-+|.+.- .+.+..|...|+++.+...
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHH
Confidence 4567888883 789999999999864 4555679999999998764
No 459
>PRK07985 oxidoreductase; Provisional
Probab=40.31 E-value=2.1e+02 Score=25.84 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=41.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCC-C-CHH-HHHHHHHcCCeEEEeCCC-CChHHHHHHHHHHHHh
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-T-SLE-RRVTMRAFGADLILTDPA-KGMGGTVKKAQELLES 187 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~-~~~-k~~~~~~~GA~V~~v~~~-~~~~~~~~~a~~~~~~ 187 (307)
++.+|+..+|.-|.++|......|.+++++-... . ... ....++..|.+++.+..+ .+.++..+...+..++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568888889999999999999999987653321 1 111 122334567766544322 1333333344444443
No 460
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=40.13 E-value=2.3e+02 Score=27.19 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=46.3
Q ss_pred EEEeeCCChHHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEcC
Q 021775 118 TIIEPTSGNMGISMAFMAAMK-GYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-GMGGTVKKAQELLESTPNAFMLQ 195 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 195 (307)
.|+..++++.+..++..+-.. | + .|+++.-.-..-...++.+|++++.++-+. +++ .+..++..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 488888888888777665332 3 2 344444344555777788999999886431 222 122222223334566665
Q ss_pred -CCCChh
Q 021775 196 -QFSNPA 201 (307)
Q Consensus 196 -~~~np~ 201 (307)
..+||-
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 456664
No 461
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=40.09 E-value=1.5e+02 Score=21.75 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=38.4
Q ss_pred CcEEEeeCCChHHHHHHH--HHHHcCCeEEEEECCCCCHHHHHHHHHc-CCeEEEeCCC
Q 021775 116 KTTIIEPTSGNMGISMAF--MAAMKGYKMVLTMPSYTSLERRVTMRAF-GADLILTDPA 171 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~--~a~~~G~~~~ivvp~~~~~~k~~~~~~~-GA~V~~v~~~ 171 (307)
...++.+++-|+.-+|+. +|++.+.|..++- ...+..-...++.+ .-+|+.+++.
T Consensus 25 ~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~ 82 (92)
T PF04122_consen 25 SDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGGE 82 (92)
T ss_pred CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCC
Confidence 345788887676655544 6666788766655 77788888888877 4577788765
No 462
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=39.96 E-value=3.9e+02 Score=26.58 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCeEEEeCCCC---Ch-HHHHHHHHHHHHhCCCcE-E
Q 021775 130 SMAFMAAMKGYKMVLTM-----------PSYTSLERRVTMRAFGADLILTDPAK---GM-GGTVKKAQELLESTPNAF-M 193 (307)
Q Consensus 130 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~~~~~GA~V~~v~~~~---~~-~~~~~~a~~~~~~~~~~~-~ 193 (307)
-+...|++.|.++++-. |.-+....+...-.-|++-+...++. .| -++.+...+++++....+ +
T Consensus 263 ~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 342 (480)
T cd00288 263 MLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSH 342 (480)
T ss_pred HHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccch
Confidence 36677899999888742 33334445666667799887765432 22 255555554444322211 1
Q ss_pred c----CCC-C--Ch-hHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 021775 194 L----QQF-S--NP-ANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES 259 (307)
Q Consensus 194 ~----~~~-~--np-~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 259 (307)
. .+. . .. .+.+ -....+.++.+.+ ..++||++.-+|.++--++ ...|...|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~-aia~sAv~~A~~l--~akaIVv~T~SG~TA~~lS----~~RP~~pIiavT~~~~ 409 (480)
T cd00288 343 RVLFNEMRRLTPRPTSTTE-AVAMSAVRAAFEL--GAKAIVVLTTSGRTARLVS----KYRPNAPIIAVTRNEQ 409 (480)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHHhc--CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 0 000 0 00 1122 2233455677776 4789999999999975444 4468899999988754
No 463
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=39.92 E-value=1.2e+02 Score=25.01 Aligned_cols=45 Identities=31% Similarity=0.318 Sum_probs=34.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
+|-.-+.|+.|..+|......|++++++= ..+.+.+.+...|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d---~~~~~~~~~~~~g~~~ 47 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYD---RSPEKAEALAEAGAEV 47 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEE---SSHHHHHHHHHTTEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeec---cchhhhhhhHHhhhhh
Confidence 47777889999999999999999998874 3567777777777544
No 464
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.82 E-value=1.2e+02 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
.+|+..+|..|..++......|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4778888999999999999999998888754
No 465
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=39.79 E-value=2.6e+02 Score=24.58 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=36.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeE
Q 021775 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165 (307)
Q Consensus 109 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 165 (307)
...+.+|.+.++...+|..|.+++..++..|.+++++... ..+...++.+|++.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 187 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADH 187 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCce
Confidence 4455666665555556999999999999999985554332 34555666677643
No 466
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=39.76 E-value=41 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 149 (307)
|++..+|..|.+.|..|+..|.+++|+-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 7889999999999999999999888886543
No 467
>PRK06847 hypothetical protein; Provisional
Probab=39.72 E-value=48 Score=30.97 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
.|+..++|-.|.++|...++.|++++|+=.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 499999999999999999999999988853
No 468
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=39.63 E-value=1.3e+02 Score=28.59 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=36.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC------CHH----HHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT------SLE----RRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~------~~~----k~~~~~~~GA~V~~ 167 (307)
.|+..++|..|.-+|...+..|.+++++.+... ++. -.+.++..|.+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 489999999999999999999999999876431 221 23334566776653
No 469
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=39.53 E-value=1.3e+02 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=35.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHHc-CCeEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---TSLERRVTMRAF-GADLI 166 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---~~~~k~~~~~~~-GA~V~ 166 (307)
+|+..++|+.|.-+|...+..+.+++++.+.. ..+...+.++.. |.+++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 48899999999999999999999999988753 223334444444 55554
No 470
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=39.50 E-value=91 Score=23.19 Aligned_cols=50 Identities=12% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 021775 213 EIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNIL 262 (307)
Q Consensus 213 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 262 (307)
|.+++.-...|.+|.=...|..+--++-.++....+|-|+.|+..+...+
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 34455423589999988899999999999999889999999999998643
No 471
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.47 E-value=2.9e+02 Score=24.93 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=41.3
Q ss_pred EEEEeCCCCCCC-cchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-----HHH
Q 021775 81 IAVKQEMFQPTA-SIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-----LER 154 (307)
Q Consensus 81 l~~K~E~~nptG-S~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-----~~k 154 (307)
|.+..|.-.-.| +|=.|...- .....++|. .-.+++...++... ..-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~L-A~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTL-ARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHHHH-HHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 455555543333 444454332 223334552 11233333334322 2446788886664 54321 234
Q ss_pred HHHHHHcCCeEEEeCC
Q 021775 155 RVTMRAFGADLILTDP 170 (307)
Q Consensus 155 ~~~~~~~GA~V~~v~~ 170 (307)
...++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5667777889999986
No 472
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.46 E-value=41 Score=33.37 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=32.3
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 122 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|||-+|.++|.++...|-++++|...... . .-+|.+++.+..
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~--~p~~v~~i~V~t 321 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGPVDL----A--DPQGVKVIHVES 321 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCCcCC----C--CCCCceEEEecC
Confidence 378999999999999999999999843211 0 225677777764
No 473
>PRK07775 short chain dehydrogenase; Provisional
Probab=39.34 E-value=2.4e+02 Score=24.92 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=35.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL-ERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~k~~~~~~~GA~V~~v~ 169 (307)
.+.+|+..+|..|.++|......|.+++++....... .-...++..|.++..+.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFP 65 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3457777789999999999999999877665432111 11223455677776544
No 474
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=39.28 E-value=3.4e+02 Score=25.66 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=41.1
Q ss_pred CCCcchhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 90 PTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
+.|.-..|.+..-.... ..+.+.+ ..|+..+++..+..++..+-...-+ .|+++.-.-..-...++.+|++++.++
T Consensus 72 ~~g~~~lr~aia~~~~~-~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd-~v~i~~P~y~~~~~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 72 TVGALSAREAIASYYHN-PDGPIEA--DDVVLCSGCSHAIEMCIAALANAGQ-NILVPRPGFPLYETLAESMGIEVKLYN 147 (401)
T ss_pred CCCCHHHHHHHHHHHhh-cCCCCCH--HHEEECcChHHHHHHHHHHhCCCCC-EEEEeCCCChhHHHHHHHcCCEEEEee
Confidence 34665666554433221 1222222 2377777777777666654432222 344554333344566788999998875
No 475
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=39.24 E-value=11 Score=36.50 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHhhcccC--CCC
Q 021775 6 RSFLKKRAL--TCS 17 (307)
Q Consensus 6 ~~~~~~~~c--~Cg 17 (307)
+.|++||+| +|+
T Consensus 308 L~CIRCGaC~n~CP 321 (459)
T COG1139 308 LRCIRCGACLNHCP 321 (459)
T ss_pred HHhhcchHhhhcCh
No 476
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.81 E-value=1.1e+02 Score=33.05 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=37.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCC---CC--HHHHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY---TS--LERRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---~~--~~k~~~~~~~GA~V~~ 167 (307)
.|+..++||+|.-+|..+.++|.+++++.... .+ ...+......|.+++.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~ 503 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV 503 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence 59999999999999999999999988887542 22 2334445567887654
No 477
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.56 E-value=1.7e+02 Score=22.02 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=30.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~ 169 (307)
|+..+.|+.|+.++..-+..+.+++++-. .+.+...++..|..++.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhccccccccc
Confidence 45667788888888888886666666654 3556666666665554433
No 478
>PRK09126 hypothetical protein; Provisional
Probab=38.54 E-value=42 Score=31.63 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=27.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
|+..++|-.|.++|.+.++.|++++|+=.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 89999999999999999999999998853
No 479
>PTZ00376 aspartate aminotransferase; Provisional
Probab=38.53 E-value=2.5e+02 Score=26.64 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=47.5
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHcC--CCCCCCcEEE--eeCCChHHHHHHHHH--HHcCCeEEEEECCCCCHHHHHHHH
Q 021775 86 EMFQPTASIKDRPAVAMLEDAENKN--LISPGKTTII--EPTSGNMGISMAFMA--AMKGYKMVLTMPSYTSLERRVTMR 159 (307)
Q Consensus 86 E~~nptGS~KdR~a~~~l~~a~~~g--~~~~g~~~vv--~~SsGN~g~alA~~a--~~~G~~~~ivvp~~~~~~k~~~~~ 159 (307)
.+..+.|.-..|.+..... ...+ .+.+. .|+ ...+|+.|..++..+ ..++-.-.|+++.-.-..-...++
T Consensus 67 ~Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~ 142 (404)
T PTZ00376 67 EYLPIEGLQSFIEAAQKLL--FGEASYALAEK--RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK 142 (404)
T ss_pred CCCCCCCCHHHHHHHHHHh--cCCCccccccC--eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH
Confidence 3444568878887665422 2222 12333 355 356778887777543 223323455666545555567888
Q ss_pred HcCCeEEEeCC
Q 021775 160 AFGADLILTDP 170 (307)
Q Consensus 160 ~~GA~V~~v~~ 170 (307)
.+|++++.++-
T Consensus 143 ~~G~~~~~v~l 153 (404)
T PTZ00376 143 SAGLNVKEYRY 153 (404)
T ss_pred HcCCceeeccc
Confidence 99999998874
No 480
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.45 E-value=2.4e+02 Score=24.80 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=35.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHHcCCeEEEeC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS-LERRVTMRAFGADLILTD 169 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~~~~~GA~V~~v~ 169 (307)
++.+|+..+|.-|.++|......|.+++++-..... ......+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 456788888999999999999999987766543111 111233455566655443
No 481
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=38.37 E-value=1.1e+02 Score=28.93 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=39.8
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEE
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~ 167 (307)
+.+.+|.+.+|. ..|..|.+++..|+..|...++++.. ...|...++.+|++-++
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777775555 67999999999999999854444432 34578888899985543
No 482
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=38.28 E-value=1.7e+02 Score=23.16 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcC----CCcEEEEEeC
Q 021775 221 QVDIFVMGIGSGGTVSGVGQYLKSQN----PNVKIYGVEP 256 (307)
Q Consensus 221 ~~d~vv~pvG~Gg~~~Gi~~~~k~~~----~~~~vigVe~ 256 (307)
.||+||+ .+...+.|+..++++.+ .++.|++.+-
T Consensus 68 ~pdaii~--~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 68 RPDAIIC--SNDRLALGVLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp SSSEEEE--SSHHHHHHHHHHHHHTTSCTTTTSEEEEESS
T ss_pred CCcEEEE--cCHHHHHHHHHHHHHcCCcccccccEEEecC
Confidence 6899998 67789999999999986 3688999874
No 483
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=38.25 E-value=1.7e+02 Score=27.65 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=41.5
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHH-HhCCCcEEcC
Q 021775 118 TIIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELL-ESTPNAFMLQ 195 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~ 195 (307)
.|+..+++..+..++..+-. -|= .|+++.-.-..-....+.+|++++.++.+.++.-..+...+.. .+.....+++
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~~~~gd--~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 182 (380)
T PLN03026 105 NILVGCGADELIDLLMRCVLDPGD--KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLT 182 (380)
T ss_pred hEEEcCCHHHHHHHHHHHhcCCCC--EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEe
Confidence 37776667777766654421 232 3444442333334456779999998865322221112222222 2233667765
Q ss_pred CCCChh
Q 021775 196 QFSNPA 201 (307)
Q Consensus 196 ~~~np~ 201 (307)
.-+||-
T Consensus 183 ~P~NPT 188 (380)
T PLN03026 183 SPNNPD 188 (380)
T ss_pred CCCCCC
Confidence 445553
No 484
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=38.19 E-value=1.5e+02 Score=27.62 Aligned_cols=52 Identities=13% Similarity=0.005 Sum_probs=29.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..+++..+..+...+- .+-.-.|+++...-..-....+.+|++++.++.
T Consensus 86 ~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 86 RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 3666666666655543332 222234555543333334446779999998864
No 485
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=38.14 E-value=2.8e+02 Score=25.73 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=44.7
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCC--CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 87 MFQPTASIKDRPAVAMLEDAENKNL--ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 87 ~~nptGS~KdR~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+-.+.|+-..|.+....... ..|. +.+ ..|+..+++..+..++..+-..+-.-.|++|.-.-..-....+.+|++
T Consensus 58 Y~~~~G~~~lr~~ia~~l~~-~~~~~~~~~--~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~ 134 (364)
T PRK07865 58 YPTTAGTPELREAIVGWLAR-RRGVTGLDP--AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGAT 134 (364)
T ss_pred CCCccCCHHHHHHHHHHHHH-HcCCCCCCc--ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCE
Confidence 33345665666444332221 1221 333 248888888888877554432233345666654434445556789999
Q ss_pred EEEeC
Q 021775 165 LILTD 169 (307)
Q Consensus 165 V~~v~ 169 (307)
++.++
T Consensus 135 ~~~~~ 139 (364)
T PRK07865 135 VVRAD 139 (364)
T ss_pred EEecC
Confidence 99886
No 486
>PRK06207 aspartate aminotransferase; Provisional
Probab=38.09 E-value=3.6e+02 Score=25.64 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=43.2
Q ss_pred CCCcchhHHHHHHHHHHHHcCC-CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEe
Q 021775 90 PTASIKDRPAVAMLEDAENKNL-ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168 (307)
Q Consensus 90 ptGS~KdR~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v 168 (307)
+.|....|.+...-... ..|. ..+. ..|+..+++..+..++..+- +.-.-.|+++.-.-..-...++.+|++++.+
T Consensus 77 ~~G~~~LR~aia~~l~~-~~g~~~~~~-~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v 153 (405)
T PRK06207 77 YRGDADIRELLAARLAA-FTGAPVDAA-DELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPV 153 (405)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCCC-CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHHcCCEEEEE
Confidence 45776777554332221 1232 2221 24788888888877666543 2222234444334445567778899999877
Q ss_pred CC
Q 021775 169 DP 170 (307)
Q Consensus 169 ~~ 170 (307)
+-
T Consensus 154 ~~ 155 (405)
T PRK06207 154 QL 155 (405)
T ss_pred ec
Confidence 53
No 487
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.04 E-value=62 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.5
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEECCCC
Q 021775 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYT 150 (307)
Q Consensus 122 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 150 (307)
-.+|=.|.+.|+..++.|.+++|+=-...
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 35788999999999999999999875543
No 488
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.01 E-value=1.3e+02 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~V~~ 167 (307)
.|+..+.|..|+++|.+.+..|.+++++-.... .......++..|.+++.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 488889999999999999999999877643322 12234557777877653
No 489
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=37.98 E-value=2e+02 Score=27.04 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=37.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCC------CH----HHHHHHHHcCCeEEE
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT------SL----ERRVTMRAFGADLIL 167 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~------~~----~k~~~~~~~GA~V~~ 167 (307)
.|+..++|+.|.-+|...+..|.+++++.+... ++ .-.+.++..|.+++.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~ 202 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL 202 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE
Confidence 488899999999999999999999999986531 21 123456677877654
No 490
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.87 E-value=2.6e+02 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
++.+|+.++|.-|.++|......|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 456888888999999999999999988775543
No 491
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=37.83 E-value=2.2e+02 Score=26.87 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=38.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc-CCeEE
Q 021775 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF-GADLI 166 (307)
Q Consensus 108 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~-GA~V~ 166 (307)
+.+.+.+|.+.++. .+|-.|.+++..|+..|...++++.. ++.+++.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 44556677664444 67888999999999999864555533 35778888888 55543
No 492
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=37.70 E-value=3.5e+02 Score=25.31 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=30.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~ 170 (307)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-....+.+|++|+.++-
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 3666677777777665543 222234555543333334457789999988764
No 493
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=37.57 E-value=1e+02 Score=28.65 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=65.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCeEEEeCCCCChHHHHHHHHHHHHhCCCcEEcCCC
Q 021775 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQF 197 (307)
Q Consensus 118 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (307)
+|..-+.||.|.++|...+..|++.++..+... .+...+..+|.++. + .. +.+++. ...++.-
T Consensus 5 kIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~--~~~~~a~~~Gv~~~--s----~~-------ea~~~A-DiVvLaV- 67 (314)
T TIGR00465 5 TVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGG--ASWKKATEDGFKVG--T----VE-------EAIPQA-DLIMNLL- 67 (314)
T ss_pred EEEEEeEcHHHHHHHHHHHHCCCeEEEEECcCh--hhHHHHHHCCCEEC--C----HH-------HHHhcC-CEEEEeC-
Confidence 478889999999999999999998766666432 33455556787531 1 11 222332 4444321
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 021775 198 SNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNI 261 (307)
Q Consensus 198 ~np~~~~~G~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~ 261 (307)
.|.. ....+..||...+. ++ .++.+..|-++.=+ ......+.+|+=|-|..+..
T Consensus 68 -pp~~---~~~~v~~ei~~~l~--~g-~iVs~aaG~~i~~~---~~~~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 68 -PDEV---QHEVYEAEIQPLLK--EG-KTLGFSHGFNIHFV---QIVPPKDVDVVMVAPKGPGT 121 (314)
T ss_pred -CcHh---HHHHHHHHHHhhCC--CC-cEEEEeCCccHhhc---cccCCCCCcEEEECCCCCcH
Confidence 1221 11233345665553 23 25555555554221 11222357899999988765
No 494
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=37.54 E-value=2.3e+02 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEeeCC--ChHHHHHHHHHHHcCCeEEEEE
Q 021775 119 IIEPTS--GNMGISMAFMAAMKGYKMVLTM 146 (307)
Q Consensus 119 vv~~Ss--GN~g~alA~~a~~~G~~~~ivv 146 (307)
|+..++ ||.--+++-+-...++|+++++
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 444444 7766666666667889999998
No 495
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=37.54 E-value=1.2e+02 Score=29.33 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH----HHHcCCeEEEeC
Q 021775 125 GNMGISMAFMAAMKGYKMVLTMPSYT--SLERRVT----MRAFGADLILTD 169 (307)
Q Consensus 125 GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~----~~~~GA~V~~v~ 169 (307)
.|.+.|++..++++|++++++-|++- .+..+.. .+..|+.+...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37889999999999999999999863 3433332 456788887665
No 496
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=37.54 E-value=1.5e+02 Score=28.55 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=42.2
Q ss_pred CCeEEEEECCCCCHHHHHHHHHcCCeEE-EeCCCCChH--HHHHHHHHHHHhCCCcEE--cC-CCCChhHHHHHHHHHHH
Q 021775 139 GYKMVLTMPSYTSLERRVTMRAFGADLI-LTDPAKGMG--GTVKKAQELLESTPNAFM--LQ-QFSNPANTRVHFETTGP 212 (307)
Q Consensus 139 G~~~~ivvp~~~~~~k~~~~~~~GA~V~-~v~~~~~~~--~~~~~a~~~~~~~~~~~~--~~-~~~np~~~~~G~~t~~~ 212 (307)
-.|..|+.-.+.-..--..++.+|.+.. ++.+. ... +..+...+..++. |..+ .+ --.||..-. -.-+.
T Consensus 25 ~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~-~~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~~P~~~~---v~~~~ 99 (395)
T PRK15454 25 SVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADS-FLHQAGMTAGLTRSLAVK-GIAMTLWPCPVGEPCITD---VCAAV 99 (395)
T ss_pred ecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHc-CCeEEEECCCCCCcCHHH---HHHHH
Confidence 3444454444332222344566774433 33321 222 2234444444443 4322 11 123553321 22344
Q ss_pred HHHHhhCCCCCEEEEecCchhHHHHHHHHH
Q 021775 213 EIWEDTMGQVDIFVMGIGSGGTVSGVGQYL 242 (307)
Q Consensus 213 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~ 242 (307)
+++++. ++| +|+++|+|..+ =++|++
T Consensus 100 ~~~r~~--~~D-~IiavGGGS~i-D~AKai 125 (395)
T PRK15454 100 AQLRES--GCD-GVIAFGGGSVL-DAAKAV 125 (395)
T ss_pred HHHHhc--CcC-EEEEeCChHHH-HHHHHH
Confidence 566654 467 46788888765 334443
No 497
>PLN02253 xanthoxin dehydrogenase
Probab=37.46 E-value=1.9e+02 Score=25.55 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=26.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEC
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMP 147 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 147 (307)
++.+|+..+|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45688888899999999999999998777643
No 498
>PRK07904 short chain dehydrogenase; Provisional
Probab=37.39 E-value=2.8e+02 Score=24.24 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHc-CCeEEEEECCCCC--HHHHHHHHHcCC-eEEEe
Q 021775 116 KTTIIEPTSGNMGISMAFMAAMK-GYKMVLTMPSYTS--LERRVTMRAFGA-DLILT 168 (307)
Q Consensus 116 ~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~--~~k~~~~~~~GA-~V~~v 168 (307)
.+.+|+..+|-.|.++|...... |.+++++...... ....+.++..|. ++..+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 45677778899999999887777 4888777544322 122344555554 45443
No 499
>PRK06753 hypothetical protein; Provisional
Probab=37.37 E-value=50 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=27.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEECC
Q 021775 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148 (307)
Q Consensus 119 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 148 (307)
|+..++|-.|.++|...++.|++++|+=..
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 889999999999999999999999888643
No 500
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=37.33 E-value=2.5e+02 Score=26.08 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCe
Q 021775 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164 (307)
Q Consensus 110 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 164 (307)
+.+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 334556665555 67899999999999999884444432 34566666777763
Done!