RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021775
(307 letters)
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 532 bits (1371), Expect = 0.0
Identities = 245/295 (83%), Positives = 268/295 (90%), Gaps = 4/295 (1%)
Query: 3 AALRSFLKKRALTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLI 62
AAL S LK+R+ +R+L + V S SFAQRLRDLPKDLP T IK D SQLI
Sbjct: 2 AALLSRLKRRSSIPPSSHTLRKL----FSTVGSPSFAQRLRDLPKDLPGTKIKTDASQLI 57
Query: 63 GRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEP 122
G+TPLV+LNKV+EGCGAYIA KQEMFQPT+SIKDRPA+AM+EDAE KNLI+PGKTT+IEP
Sbjct: 58 GKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEP 117
Query: 123 TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQ 182
TSGNMGIS+AFMAAMKGYKM+LTMPSYTSLERRVTMRAFGA+L+LTDP KGMGGTVKKA
Sbjct: 118 TSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAY 177
Query: 183 ELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYL 242
ELLESTP+AFMLQQFSNPANT+VHFETTGPEIWEDT+GQVDIFVMGIGSGGTVSGVG+YL
Sbjct: 178 ELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYL 237
Query: 243 KSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297
KS+NPNVKIYGVEPAESN+LNGGKPGPH ITGNGVGFKPDILDMDVMEKVLEVSS
Sbjct: 238 KSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSS 292
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 346 bits (890), Expect = e-120
Identities = 134/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ +LIG TPLV LN+++ GC A + K E P+ S+KDR A++M+EDAE + L+ PG
Sbjct: 1 IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-D 59
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
TIIE TSGN GI++A +AA KGYK++LTMP SLERR +RA+GA+LILT +GM G
Sbjct: 60 TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGA 119
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSG 237
+ KA+EL T ML QF NPAN H++TTGPEIW DT G++D FV G+G+GGT++G
Sbjct: 120 IDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITG 179
Query: 238 VGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297
VG+YLK QNPN+KI VEPAES +L+GG+PGPH I G G GF P ILD+ ++++V+ VS
Sbjct: 180 VGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSD 239
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 345 bits (887), Expect = e-120
Identities = 129/236 (54%), Positives = 166/236 (70%), Gaps = 3/236 (1%)
Query: 63 GRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEP 122
G TPLV LN++S G GA I K E F P S+KDR A+ M+EDAE + L+ PG TTIIEP
Sbjct: 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEP 59
Query: 123 TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK--GMGGTVKK 180
TSGN GI +A +AA KGY+ ++ MP S E+R +RA GA++ILT A+ GM G + K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119
Query: 181 AQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQ 240
A+EL TPNAF L QF NPAN H+ETT PEIWE G+VD FV G+G+GGT++GV +
Sbjct: 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVAR 179
Query: 241 YLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296
YLK +NPNV+I GV+P S + +GG PGPH I G G GF P+ LD ++++V+ VS
Sbjct: 180 YLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVS 235
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 344 bits (884), Expect = e-119
Identities = 149/244 (61%), Positives = 200/244 (81%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I +DV++LIG+TPLV+LN V +GC A IA K EM +P +S+KDR +M+ DAE K LI
Sbjct: 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIK 64
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
PG++ +IEPTSGN GI +AFMAA KGYK+++TMP+ SLERR+ + AFGA+L+LTDPAKG
Sbjct: 65 PGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKG 124
Query: 174 MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGG 233
M G V+KA+E+L TPN+++LQQF NPAN ++H+ETTGPEIW+ T G+VD FV GIG+GG
Sbjct: 125 MKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGG 184
Query: 234 TVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVL 293
T++G G+YLK QNP++K+YGVEP ES +L+GGKPGPH I G G GF P +LD+D++++V+
Sbjct: 185 TITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244
Query: 294 EVSS 297
+VSS
Sbjct: 245 QVSS 248
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 330 bits (847), Expect = e-113
Identities = 135/241 (56%), Positives = 181/241 (75%), Gaps = 3/241 (1%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+S+LIG TPLV LN++ EGC A + VK E P+ S+KDR A+ M+ DAE + L+ PG
Sbjct: 1 ISELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-K 58
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
TI+EPTSGN GI++A +AA +GYK++LTMP S+ERR ++A+GA+L+LT A+GM G
Sbjct: 59 TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA 118
Query: 178 VKKAQELLESTPNA-FMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
+ KA+E+ STPN+ FMLQQF NPAN +H +TTGPEIW DT G++D FV G+G+GGT++
Sbjct: 119 IAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTIT 178
Query: 237 GVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296
GVG+ LK Q PN+KI VEPAES +L+GGKPGPH I G G GF P L+ V+++V+ VS
Sbjct: 179 GVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVS 238
Query: 297 S 297
Sbjct: 239 D 239
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 321 bits (825), Expect = e-110
Identities = 126/245 (51%), Positives = 170/245 (69%), Gaps = 4/245 (1%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I + LIG TPLV LN++S G G I K E F P S+KDR A+ M+EDAE + L+
Sbjct: 1 IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
PG TI+E TSGN GI++A +AA KGY++++ MP S ERR +RA GA++ILT A G
Sbjct: 61 PG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119
Query: 174 -MGGTVKKAQELLESTPN-AFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
M G +++A+EL P A L QF NPAN H+ETTGPEIW+ T G+VD FV G+G+
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGT 179
Query: 232 GGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEK 291
GGT++GV +YLK +NPNV+I V+P S +L+GG+ GPH I G G GF P+ LD+D++++
Sbjct: 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDE 238
Query: 292 VLEVS 296
V+ VS
Sbjct: 239 VIRVS 243
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 310 bits (795), Expect = e-105
Identities = 129/253 (50%), Positives = 189/253 (74%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
IK DV++LIG TP+V+LN + +GC A IA K EM +P +S+KDR A +M++DAE+K LI+
Sbjct: 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLIT 66
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
PGK+T+IE T+GN GI +A + A +GYK++L MPS SLERR+ +RA GA++ LTD + G
Sbjct: 67 PGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIG 126
Query: 174 MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGG 233
+ G ++KA+E+L TP ++ QQF NPAN +H+ TTGPEIW D+ G+VDI V G+G+GG
Sbjct: 127 LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGG 186
Query: 234 TVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVL 293
T +GVG++LK +N ++K+ VEP ES +L+GG+PGPHLI G G G P LD+ ++++++
Sbjct: 187 TATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEII 246
Query: 294 EVSSIANAQTITL 306
+V+ +T L
Sbjct: 247 QVTGEEAIETAKL 259
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 311 bits (798), Expect = e-104
Identities = 145/245 (59%), Positives = 200/245 (81%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
NI +VSQLIG+TP+V+LN +++GC A IA K E+ +P S+KDR +M+ DAE K I
Sbjct: 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFI 171
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
SPGK+ ++EPTSGN GI +AF+AA +GY+++LTMP+ S+ERRV ++AFGA+L+LTDPAK
Sbjct: 172 SPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAK 231
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232
GM G V+KA+E+L++TP+A+MLQQF NPAN ++H+ETTGPEIW+DT G+VDIFV GIG+G
Sbjct: 232 GMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTG 291
Query: 233 GTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
GT++GVG+++K +NP ++ GVEP ES+IL+GGKPGPH I G G GF P LD +M++V
Sbjct: 292 GTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351
Query: 293 LEVSS 297
+ +SS
Sbjct: 352 IAISS 356
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 243 bits (623), Expect = 2e-79
Identities = 107/247 (43%), Positives = 142/247 (57%), Gaps = 14/247 (5%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
I DVS IG TPL+ LN+ SE G I K E P S+KDR A+ ++ DAE + L
Sbjct: 1 MKIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGL 60
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT--- 168
+ PG T I+E T+GN GI +A +AA +GYK V+ MP S E++ +RA GA+L+L
Sbjct: 61 LKPGGT-IVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAA 119
Query: 169 ---DPAKGMGGTVKKAQELLESTPN-AFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
+P + G + A+EL+ S PN A QF NPAN H+ETTGPEIWE T G+VD
Sbjct: 120 PYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDG 179
Query: 225 FVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNI----LNG--GKPGPHLITGNGVG 278
FV +G+GGT++GV +YLK NP VKI +P S + G G + G G G
Sbjct: 180 FVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQG 239
Query: 279 FKPDILD 285
L+
Sbjct: 240 RITANLE 246
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 232 bits (595), Expect = 1e-75
Identities = 94/199 (47%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Query: 60 QLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTI 119
IG TPLV L ++ G I K E P S+KDRPA++M+ AE + I PG T+
Sbjct: 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTL 66
Query: 120 IEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVK 179
IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 67 IEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARD 126
Query: 180 KAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVG 239
A ++ ++ +L QF+NP N H+ETTGPEIW T G++ FV +G+ GT+ GV
Sbjct: 127 LALQM-QAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVS 185
Query: 240 QYLKSQNPNVKIYGVEPAE 258
+YLK QNP V+I G++P E
Sbjct: 186 RYLKEQNPAVQIVGLQPEE 204
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 212 bits (542), Expect = 8e-68
Identities = 97/238 (40%), Positives = 144/238 (60%), Gaps = 9/238 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q +G TPLV L ++ G+ + +K E P S+KDRPA++M+ +AE + I PG
Sbjct: 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV 61
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ER+ MRA+GA+LIL +GM G
Sbjct: 62 -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGA 120
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSG 237
A EL L QF+NP N H+ +TGPEIW+ T G++ FV +G+ GT+ G
Sbjct: 121 RDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMG 179
Query: 238 VGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
V ++LK QNP V+I G++P E + + G + P + P I D ++++VL++
Sbjct: 180 VSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPT-------EYLPGIFDASLVDRVLDI 230
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 216 bits (551), Expect = 4e-67
Identities = 102/255 (40%), Positives = 151/255 (59%), Gaps = 17/255 (6%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I+ ++ LIG TPLV LNKVS+G + K E F P S+KDR A+ M+EDAE +
Sbjct: 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----- 168
PG TIIEPTSGN GI +A +AA+KGYK ++ +P S E+ ++A GA+++ T
Sbjct: 61 PG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119
Query: 169 --DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFV 226
P +G A+ L+ P A +L Q++NP+N H++ TGPEI E G++D+FV
Sbjct: 120 FDSPESHIG----VAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFV 175
Query: 227 MGIGSGGTVSGVGQYLKSQNPNVKIYGVEP-----AESNILNGGKPGPHLITGNGVGFKP 281
G G+GGT++G+ +YLK NP +I G +P A+ LN P+ + G G F P
Sbjct: 176 AGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIP 235
Query: 282 DILDMDVMEKVLEVS 296
+LD V+++ ++
Sbjct: 236 TVLDRKVVDEWIKTD 250
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 203 bits (518), Expect = 1e-64
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS 124
TPLV L ++S+ GA I +K E PT S KDR A+ ++ AE + + K IIE T
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLP--KGVIIESTG 58
Query: 125 GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQEL 184
GN GI++A AA G K + MP S E+ MRA GA+++L + A+EL
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKEL 116
Query: 185 LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQ-VDIFVMGIGSGGTVSGVGQYLK 243
E P A+ + QF NPAN T G EI E GQ D V+ +G GG ++G+ + LK
Sbjct: 117 AEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALK 175
Query: 244 SQNPNVKIYGVEP 256
PNVK+ GVEP
Sbjct: 176 ELLPNVKVIGVEP 188
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 198 bits (507), Expect = 3e-62
Identities = 85/244 (34%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ LIG TPLV L ++ + K E F P SIKDRPA+ +LE A + I+PG T
Sbjct: 1 ILSLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPG-T 59
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMV-LTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
TIIE +SGN+GI++A + A KG + + + P+ + ++ +RA+GA++ GG
Sbjct: 60 TIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKL-LRAYGAEVEKVTEPDETGG 118
Query: 177 ----TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232
+ + +ELL S P+A+ Q++NP N R H+ TG EI +D +G+ +
Sbjct: 119 YLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIARA-FPPLDYLFVGVSTT 177
Query: 233 GTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
GT+ G + L+ + PN K+ V+ A +++ GG PG I G G P++LD +++ V
Sbjct: 178 GTLMGCSRRLRERGPNTKVIAVD-AVGSVIFGGPPGRRHIPGLGASVVPELLDESLIDDV 236
Query: 293 LEVS 296
+ V
Sbjct: 237 VHVP 240
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 183 bits (467), Expect = 2e-56
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 19/235 (8%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+S IG TPLV L G Y+ K E PT S KDR A +L A +
Sbjct: 1 ISLGIGPTPLVRLPSPLLGARVYL--KLESLNPTGSFKDRGAAYLLLRALERG------A 52
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL---TDPAKGM 174
T++E +SGN G ++A AA G K+ + +P S + + MRA GA++IL
Sbjct: 53 TVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDA 112
Query: 175 GGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDT-MGQVDIFVMGIGSGG 233
++A ELL + L Q++NP N ++T G EI E G D V+ +G GG
Sbjct: 113 LELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGG 171
Query: 234 TVSGVGQYLKSQNPNVKIYGVEPAESNILNGG------KPGPHLITGNGVGFKPD 282
+G+ + LK P +++ GVEP + L P P I G G G D
Sbjct: 172 LAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTTIAGLGPGIPLD 226
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 127 bits (319), Expect = 2e-33
Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 45/275 (16%)
Query: 33 VDSSSFAQRL---RDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQ 89
+ S SF R K L + + IG TPL+ +N +SE G I K E
Sbjct: 19 LLSYSFLLCNSRKRKTKKPLSKKKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLN 78
Query: 90 PTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149
P S+KDR AV ++E+A + PG + E ++G+ IS+A +A G K + +P
Sbjct: 79 PGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLATVAPAYGCKCHVVIPDD 137
Query: 150 TSLERRVTMRAFGA----------------------------------------DLILTD 169
++E+ + A GA D I +
Sbjct: 138 VAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLE 197
Query: 170 PAKG-MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMG 228
G + K+ S F QF N AN R H+E TGPEIWE T G +D FV
Sbjct: 198 KTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAA 257
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN 263
G+GGT++GV ++L+ +NPN+K + ++P S + N
Sbjct: 258 AGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFN 292
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 99 bits (250), Expect = 4e-24
Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 19/209 (9%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ ++ TPL +SE GA I +K+E QP S K R A L + + G
Sbjct: 19 LKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG-- 76
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+I ++GN +A+ A G K + MP T + R +GA++IL
Sbjct: 77 -VIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFD--DA 133
Query: 178 VKKAQELLESTPNAFMLQQFSNP------ANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
A+EL E + F +P T EI E D + +G
Sbjct: 134 YAAAEELAEEE-GLTFVPPFDDPDVIAGQG-------TIALEILEQLPDLPDAVFVPVGG 185
Query: 232 GGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
GG +SG+ LK+ +P +K+ GVEP +
Sbjct: 186 GGLISGIATALKALSPEIKVIGVEPEGAP 214
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 92.2 bits (230), Expect = 1e-21
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
+ ++ RTPL+ +SE GA + +K E Q T S K R A + L + E
Sbjct: 11 IKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAK---- 66
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 174
G ++ ++GN +A+ A + G + MP + RA+GA+++L
Sbjct: 67 G---VVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DF 121
Query: 175 GGTVKKAQELLESTPNAFMLQQFSNPANTRVHFE------TTGPEIWEDTMGQVDIFVMG 228
KA+EL E F+ +P + + T G EI E + +D +
Sbjct: 122 DEAEAKARELAEEEGLTFI-----HPFD---DPDVIAGQGTIGLEILEQ-VPDLDAVFVP 172
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+G GG ++G+ +K+ +PN K+ GVEP +
Sbjct: 173 VGGGGLIAGIATAVKALSPNTKVIGVEPEGAP 204
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 80.3 bits (198), Expect = 6e-17
Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV---AMLEDAENKNL 111
K + + RTPL+ + G I K E FQ T S K R AV + L + E +N
Sbjct: 16 KSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRN- 74
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT--- 168
+I ++GN +A+ A++ G + MP YT ++ + A+GA +ILT
Sbjct: 75 ------GVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD 128
Query: 169 -DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVM 227
D A + + N ++ F++ T G EI ED + +D ++
Sbjct: 129 YDEAHRYADKIAMDE-------NRTFIEAFNDRWVISGQ-GTIGLEIMED-LPDLDQIIV 179
Query: 228 GIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+G GG +SG+ K NPNVKI G+E S+
Sbjct: 180 PVGGGGLISGIALAAKHINPNVKIIGIESELSD 212
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 77.9 bits (192), Expect = 3e-16
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS 124
TPL++ +S+ G+ + +K E Q T S K R A+ + + + ++ ++
Sbjct: 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQ----RQRGVVAASA 56
Query: 125 GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQEL 184
GN +A+ A G K V+ MP + +++GA++IL G +A
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILH------GDDYDEAYAF 110
Query: 185 ---LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQY 241
L + F + T G EI ED + VD ++ +G GG +SGV
Sbjct: 111 ATSLAEEEGRVFVHPFDDE-FVMAGQGTIGLEIMED-IPDVDTVIVPVGGGGLISGVASA 168
Query: 242 LKSQNPNVKIYGVE----PAESNILNGGKP 267
K NPNVK+ GVE P+ L GK
Sbjct: 169 AKQINPNVKVIGVEAEGAPSMYESLREGKI 198
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 74.0 bits (183), Expect = 7e-15
Identities = 66/218 (30%), Positives = 99/218 (45%), Gaps = 45/218 (20%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
+ ++ RTPL + +SE GA + +K E Q T S K R A +A L + E
Sbjct: 16 LKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEE------- 68
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 174
++ ++GN +A+ A++ G K + MP L + R++GA+++L
Sbjct: 69 RARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLH------ 122
Query: 175 GGTV-----KKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTM 219
G V KAQEL E T F VH F+ T G EI ED +
Sbjct: 123 -GDVYDEALAKAQELAEETGATF------------VHPFDDPDVIAGQGTIGLEILED-L 168
Query: 220 GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
VD V+ IG GG +SGV +K+ P V++ GV+
Sbjct: 169 PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAE 206
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 72.4 bits (178), Expect = 2e-14
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNL 111
K+ +S + +TP + +S+ GA + +K+E Q T + K R A +A L + + +
Sbjct: 11 KQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQ-- 68
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT--- 168
+I ++GN +A A G K V+ MP T L + +A GA++IL
Sbjct: 69 -----HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN 123
Query: 169 -DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWED 217
D A K L T +H FE T E+ ++
Sbjct: 124 YDEAYAFALEYAKENNL------------------TFIHPFEDEEVMAGQGTIALEMLDE 165
Query: 218 TMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV----EPAESNILNGGKP 267
+ +D+ V+ +G GG +SG+ K NPN+KI GV PA + K
Sbjct: 166 -ISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI 218
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 70.6 bits (174), Expect = 1e-13
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
+ ++ TPL + +SE GA + +K+E QP S K R A ++ L D E
Sbjct: 19 LKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAA---- 74
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD---LILTDPA 171
++ ++GN +A+ G V+ MP T ++ +R FG + ++L
Sbjct: 75 ---GVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLV--- 128
Query: 172 KGMGGT----VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWED--TMGQVDIF 225
G T AQE E T A + F +P + T EI E G D
Sbjct: 129 ---GDTFDDSAAAAQEYAEET-GATFIPPFDDP-DVIAGQGTVAVEILEQLEKEGSPDYV 183
Query: 226 VMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
+ +G GG +SGV YLK ++P KI GVEPA
Sbjct: 184 FVPVGGGGLISGVTTYLKERSPKTKIIGVEPA 215
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 69.0 bits (169), Expect = 3e-13
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISP 114
++ + +++ TPL ++SE GA I +K+E QP S K R A L+ + L
Sbjct: 7 RKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL--- 63
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGA---DLILTDPA 171
++ ++GN A+ G + MP+ T ++ ++ FG ++IL
Sbjct: 64 -AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILV--- 119
Query: 172 KGMGGT----VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVM 227
G T A+E +E + F +P T EI + + D V+
Sbjct: 120 ---GDTFDQCAAAAREHVEDH-GGTFIPPFDDPRIIEGQ-GTVAAEILDQLPEKPDYVVV 174
Query: 228 GIGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
+G GG +SG+ YL +P KI GVEP
Sbjct: 175 PVGGGGLISGLTTYLAGTSPKTKIIGVEPE 204
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 67.1 bits (164), Expect = 2e-12
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS 124
TPL K+SE G I +K+E QP S K R A + + + G +I ++
Sbjct: 18 TPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQL-SPEQKARG---VIAASA 73
Query: 125 GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----DPAKGMGGTVKK 180
GN +AF AA G K ++ MP T + +R FG +++L D AK K
Sbjct: 74 GNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKA------K 127
Query: 181 AQELLESTPNAFMLQQFSNP---ANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSG 237
A EL + F + F +P A T EI +D + +G GG +G
Sbjct: 128 AIELSQEKGLTF-IHPFDDPLVIAGQ----GTLALEILRQVANPLDAVFVPVGGGGLAAG 182
Query: 238 VGQYLKSQNPNVKIYGVEPAESNI----LNGGKP 267
V +K P +K+ GVEP +S+ L+ G+P
Sbjct: 183 VAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEP 216
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 66.1 bits (162), Expect = 2e-12
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 41 RLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAY-IAVKQEMFQPTASIKDRPA 99
R R+L LP VS G TPLV ++ E G + VK E PT S KDR
Sbjct: 3 RYREL---LP-VTEDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGM 58
Query: 100 VAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR 159
+ A K L G + ++GN S+A AA G K V+ +P+ +L +
Sbjct: 59 TVAVSKA--KEL---GVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQAL 113
Query: 160 AFGADLILTDPAKG-MGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWED 217
A+GA ++ +G ++ +EL E L NP R+ +T EI E
Sbjct: 114 AYGATVL---AVEGNFDDALRLVRELAEENW--IYLSNSLNP--YRLEGQKTIAFEIAEQ 166
Query: 218 TMGQV-DIFVMGIGSGGTVSGV 238
+V D V+ +G+GG ++ +
Sbjct: 167 LGWEVPDYVVVPVGNGGNITAI 188
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 65.9 bits (161), Expect = 3e-12
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTT 118
I +TPL N +SE C I +K E Q T S K R A ++ L DAE +
Sbjct: 25 IRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRK-------G 77
Query: 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTV 178
++ ++GN +A A+ G + MP + +GA+++L T+
Sbjct: 78 VVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLH--GDNFNDTI 135
Query: 179 KKAQELLESTPNAFMLQQFSNPANTRVHFE---TTGPEIWEDTMGQVDIFVMGIGSGGTV 235
K +E++E F+ P + T G EI ED + VD ++ IG GG +
Sbjct: 136 AKVEEIVEEEGRTFI-----PPYDDPKVIAGQGTIGLEILED-LWDVDTVIVPIGGGGLI 189
Query: 236 SGVGQYLKSQNPNVKIYGVE 255
+G+ LKS NP + I GV+
Sbjct: 190 AGIAVALKSINPTIHIIGVQ 209
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 65.6 bits (160), Expect = 5e-12
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTTIIE 121
TPL +S G + +K+E QP S K R A +A L + +I
Sbjct: 38 TPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLAR-------GVIT 90
Query: 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKA 181
++GN +A AA G K V+ MP T + +RA G +++L + + A
Sbjct: 91 ASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHA 148
Query: 182 QELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQY 241
+L E F + F +P + T EI G +D + +G GG ++G+ Y
Sbjct: 149 LKLAEEEGLTF-VPPFDDP-DVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAY 206
Query: 242 LKSQNPNVKIYGVEPAESNIL 262
+K P +K+ GVEP +SN L
Sbjct: 207 VKYVRPEIKVIGVEPDDSNCL 227
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 64.7 bits (158), Expect = 7e-12
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 25/206 (12%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPG---KTTIIE 121
TPL +S+ G + +K E Q T S K R A NK + + +I
Sbjct: 21 TPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFR-------GASNKLRLLNEAQRQQGVIT 73
Query: 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL--TDPAKGMGGTVK 179
+SGN G +A A + G + + P S + +RA GA++ L D +
Sbjct: 74 ASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARR 133
Query: 180 KAQELLESTPNAFMLQQFSNPANTRVHFE---TTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
A++ + + +P N T G E+ E +FV +G GG +S
Sbjct: 134 AAEQ--QGKV-------YISPYNDPQVIAGQGTIGMELVEQQPDLDAVFV-AVGGGGLIS 183
Query: 237 GVGQYLKSQNPNVKIYGVEPAESNIL 262
G+ YLK+ +P +I G PA S L
Sbjct: 184 GIATYLKTLSPKTEIIGCWPANSPSL 209
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 64.9 bits (158), Expect = 9e-12
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTS 124
+PL K+SE G + +K+E QP S K R A M+ + L +I ++
Sbjct: 110 SPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSA 165
Query: 125 GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQEL 184
GN +A A G V+ MP T + ++ GA ++L + K + L
Sbjct: 166 GNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRAL 225
Query: 185 LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKS 244
E + F +P + T G EI G + + +G GG ++G+ Y+K
Sbjct: 226 EEGR---TFIPPFDHP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKR 281
Query: 245 QNPNVKIYGVEPAESNIL 262
P VKI GVEP+++N +
Sbjct: 282 VRPEVKIIGVEPSDANAM 299
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 62.5 bits (152), Expect = 4e-11
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV-AMLEDAENKNLI 112
IK+ + TP+V ++E G I K E Q T + K R + +LE E L
Sbjct: 17 IKQYLHL----TPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP 72
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
I+ ++GN G ++A+ + + G K + +P TS ++ +G ++ILT+ +
Sbjct: 73 ----DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNTRQ 128
Query: 173 GMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232
K+ +E + + + +T T E + D G G
Sbjct: 129 EAEEKAKEDEE-----QGFYYIHPSDSD-STIAGAGTLCYEALQQLGFSPDAIFASCGGG 182
Query: 233 GTVSGVGQYLKSQ--NPNVKIYGVEPAESN 260
G +S G YL + +P + G EP +N
Sbjct: 183 GLIS--GTYLAKELISPTSLLIGSEPLNAN 210
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 61.1 bits (149), Expect = 2e-10
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTTII 120
RTP V +S+ GA + +K E Q TAS K+R A + +L + E +I
Sbjct: 23 RTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEE-------RARGVI 75
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKK 180
++GN +A+ A G + MP +T + R FGA+++L G T
Sbjct: 76 AMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLH------GET--- 126
Query: 181 AQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMGQVDIFVMGIG 230
L E+ +A L + T VH ++ T E+ ED +D V+ IG
Sbjct: 127 ---LDEARAHARELAEEEGL--TFVHPYDDPAVIAGQGTVALEMLEDA-PDLDTLVVPIG 180
Query: 231 SGGTVSGVGQYLKSQNPNVKIYGVE----PAESNILNG 264
GG +SG+ K+ P+++I GV+ P+ + G
Sbjct: 181 GGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKG 218
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 60.1 bits (146), Expect = 2e-10
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 63 GRTPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIE 121
G TPL+ K+ E G I +K E PT + KDR A A + A + G + I
Sbjct: 14 GGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRA-----MRLGYSGITV 68
Query: 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
T GN G S+A+ A + G K V+ +P S R M +GA++I D
Sbjct: 69 GTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVD 116
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 59.0 bits (144), Expect = 8e-10
Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 47/224 (20%)
Query: 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAM---LEDAENKNLIS 113
DV+Q TPL K+S G + +K+E QP S K R A L + +
Sbjct: 16 DVAQ---ETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLAR--- 69
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----D 169
G +I ++GN +A AA G K V+ MP T + +RAFG +++L D
Sbjct: 70 -G---VITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFD 125
Query: 170 PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTM 219
A A EL E F +H F+ T EI +
Sbjct: 126 EAY------AHAIELAEEEGLTF------------IHPFDDPDVIAGQGTIAMEILQQHP 167
Query: 220 GQVD-IFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNIL 262
+D +FV +G GG ++GV Y+K P +K+ GVEP +S L
Sbjct: 168 HPLDAVFV-PVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACL 210
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 57.2 bits (138), Expect = 2e-09
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDR---PAVAMLEDAENKNL 111
+S + TPLV +SE CG + +K E Q T S K R AV L D +
Sbjct: 10 AARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR--- 66
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
++ ++GN G ++A+ AA +G + + M + +R GA++ +
Sbjct: 67 ----AAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRI---- 118
Query: 172 KGMGGTVKKAQELLE---STPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMG 228
+G + AQE +E + ML F +P T G E+ E M + ++
Sbjct: 119 --VGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQ-GTLGLEVVEQ-MPDLATVLVP 174
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGV 254
+ GG SGV +K+ P+ ++ GV
Sbjct: 175 LSGGGLASGVAMAVKAARPDTRVIGV 200
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 57.3 bits (139), Expect = 3e-09
Identities = 47/171 (27%), Positives = 65/171 (38%), Gaps = 31/171 (18%)
Query: 32 PVDSSSFAQRLRDLPKD---------LPATNIKRDVSQLIGRTPLVFLNKVSEGCG---A 79
P S +L L LP I VS G TPL ++ G
Sbjct: 36 PYFSLEEIDKLLGLSYPELAWRYLELLPVGEI-PAVSLGEGGTPLYKAPALAAPLGVLND 94
Query: 80 YIAVKQEMFQPTASIKDR---PAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAA 136
+ VK+ PT S KDR V++ ++ G TI+ +SGN G S A AA
Sbjct: 95 NLYVKELGHNPTGSFKDRGMTVLVSLAKEL--------GAKTILCASSGNTGASAAAYAA 146
Query: 137 MKGYKMVLTMPS-YTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE 186
G K+ + P S + M GA +I + G AQEL++
Sbjct: 147 RAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI------AVDGNFDDAQELVK 191
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 52.0 bits (125), Expect = 1e-07
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAY-IAVKQEMFQPTASIKDRPAVAMLEDAE 107
LP T K V G TPL + G + V + PT S KDR L
Sbjct: 8 LPVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALT--- 64
Query: 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRVTMRAFGADLI 166
+ G T++ ++GN G + A A G K+V+ P+ SL + + A+++
Sbjct: 65 --KALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVV 122
Query: 167 LTDPAKGMGGTVKKAQELL 185
+ G AQ L+
Sbjct: 123 ------AIDGNFDDAQRLV 135
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 52.1 bits (125), Expect = 1e-07
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAEN 108
LP + +S G TPL+ ++SE G + +K E PT S +DR A +
Sbjct: 53 LPQVK--KIISLGEGGTPLI-RARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYG-- 107
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166
+ I + GN S+A +A G + + +P + + M AFGA +I
Sbjct: 108 ---LPYAANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKII 162
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 51.2 bits (122), Expect = 2e-07
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 16/213 (7%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAEN 108
LP DVS + G TPL+ L +S+ G + K E PT S KDR V + A+
Sbjct: 13 LPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKE 72
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR-AFGADLIL 167
+ G II ++GN S A AA G K ++ +P ++ A+GA++I
Sbjct: 73 E-----GSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIIS 127
Query: 168 TDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVM 227
+ +K + + P L NP +T EI + D+ +
Sbjct: 128 IE--GNFDDALKAVRNIAAEEP--ITLVNSVNPYRIEGQ-KTAAFEICDQLQRAPDVLAI 182
Query: 228 GIGSGGTVS----GVGQYLKSQN-PNVKIYGVE 255
+G+ G ++ G +Y K + +I+G E
Sbjct: 183 PVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFE 215
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 50.4 bits (121), Expect = 4e-07
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 64 RTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDR---PAVAMLEDAENKNLISPGKTTII 120
RTP++ GA + K E FQ + K R A++ + + ++
Sbjct: 24 RTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRA-------GVV 76
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKK 180
+SGN ++A A + G + MP + R +G +++ D ++
Sbjct: 77 TFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYT----EDRE 132
Query: 181 A--QELLESTPNAFMLQQFSNPANTRVHF----ETTGPEIWEDTMGQVDIFVMGIGSGGT 234
+ L E ++ + +P H T E++E+ G +D + +G GG
Sbjct: 133 EIGRRLAEER-GLTLIPPYDHP-----HVIAGQGTAAKELFEEV-GPLDALFVCLGGGGL 185
Query: 235 VSGVGQYLKSQNPNVKIYGVEPAESN 260
+SG ++ +P K+YGVEP N
Sbjct: 186 LSGCALAARALSPGCKVYGVEPEAGN 211
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 50.0 bits (120), Expect = 5e-07
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 73 VSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMA 132
++E G + VK E PT + K R + + + P +I T GN G S+A
Sbjct: 30 LAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRG---PRVRGVISATRGNHGQSVA 86
Query: 133 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166
F A G + +P S+E+ MRA GA+LI
Sbjct: 87 FAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 48.4 bits (116), Expect = 1e-06
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 29/210 (13%)
Query: 55 KRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV-AMLEDAENKNLIS 113
+R ++ + RTPLV +S G + +K E QPT S K R A A+L +S
Sbjct: 10 RRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLS-------LS 62
Query: 114 PGKTT--IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ ++ ++GN G ++A+ A G + + M + +RA GA++ +
Sbjct: 63 AQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIV--- 119
Query: 172 KGMGGTVKKAQE----LLESTPNAFMLQQFSNP---ANTRVHFETTGPEIWEDTMGQVDI 224
G + AQ L+ M+ F +P A T G EI E + V
Sbjct: 120 ---GRSQDDAQAEVERLVREEGLT-MVPPFDDPRIIAGQG----TIGLEILEA-LPDVAT 170
Query: 225 FVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254
++ + GG SGV +K+ P +++ GV
Sbjct: 171 VLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 48.8 bits (117), Expect = 2e-06
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 16 CSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPKD---LPATNIKRDVSQLIGRTPLVFLNK 72
C +P+L+R + + V + A R +L + LP + + VS G TPL+ L +
Sbjct: 28 CGKPLLVRYDLEAVKQAVTREALAGRPANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPR 87
Query: 73 VSEGCGA-YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISM 131
+ + G + VK E PT S K R + A K L G + PT+GN G +
Sbjct: 88 LGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRA--KEL---GVKHLAMPTNGNAGAAW 142
Query: 132 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
A AA G + + MP+ R+ GA+L L D
Sbjct: 143 AAYAARAGIRATIFMPADAPEITRLECALAGAELYLVD 180
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 48.0 bits (115), Expect = 2e-06
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 21/211 (9%)
Query: 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPG 115
+ ++ I RTP++ + G + +K E Q T S K R A L A
Sbjct: 15 QRIAPHIRRTPVLEADGAGFGPAP-VWLKLEHLQHTGSFKARGAFNRLLAAP------VP 67
Query: 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG 175
++ + GN G+++A+ AA G + +P + +RA GA++++ G
Sbjct: 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVV------G 121
Query: 176 GTVKKAQEL---LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232
A E + A + + P T G EI E+ VD ++ +G G
Sbjct: 122 AEYADALEAAQAFAAETGALLCHAYDQPE-VLAGAGTLGLEI-EEQAPGVDTVLVAVGGG 179
Query: 233 GTVSGVGQYLKSQNPNVKIYGVEPAESNILN 263
G ++G+ + + ++ VEP + L+
Sbjct: 180 GLIAGIAAWFE---GRARVVAVEPEGAPTLH 207
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 47.8 bits (114), Expect = 3e-06
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
IK +S GRTPL+ + K + PT S KDR +V ++ L
Sbjct: 48 IKHFISLGEGRTPLIKKGNIW--------FKLDFLNPTGSYKDRGSVTLIS-----YLAE 94
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166
G I E +SGN G S+A A G ++ + +P S + + ++GA+++
Sbjct: 95 KGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVV 147
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 46.6 bits (110), Expect = 8e-06
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 11/199 (5%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAEN 108
LP T+ +S G TPL+ L +S+ G + K E PT S KDR V + A+
Sbjct: 13 LPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKE 72
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRVTMRAFGADLIL 167
+ G +I ++GN + A A G K + +P +L + +GAD+I
Sbjct: 73 E-----GAEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADII- 126
Query: 168 TDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVM 227
+K +EL E+ A L NP +T EI E D+ +
Sbjct: 127 -SIQGNFDEALKSVRELAET--EAVTLVNSVNPYRLEGQ-KTAAFEICEQLGSAPDVLAI 182
Query: 228 GIGSGGTVSGVGQYLKSQN 246
+G+ G +S + K N
Sbjct: 183 PVGNAGNISAYWKGFKEWN 201
>gnl|CDD|215524 PLN02970, PLN02970, serine racemase.
Length = 328
Score = 45.8 bits (109), Expect = 1e-05
Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTT 118
I RTP++ + + G + K E FQ + K R A + L D + +
Sbjct: 25 IHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQ-------AEKG 77
Query: 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTV 178
++ +SGN ++A A ++G + +P + + +G + +P +
Sbjct: 78 VVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESRE 135
Query: 179 KKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGV 238
A + + A ++ +++ T E E + ++D+ ++ I GG +SG+
Sbjct: 136 AVAARVQQ-ETGAVLIHPYNDG-RVISGQGTIALEFLEQ-VPELDVIIVPISGGGLISGI 192
Query: 239 GQYLKSQNPNVKIYGVEPAESN 260
K+ P++KI EP ++
Sbjct: 193 ALAAKAIKPSIKIIAAEPKGAD 214
>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members
of this protein family are the homodimeric, pyridoxal
phosphate enzyme diaminopropionate ammonia-lyase, which
adds water to remove two amino groups, leaving pyruvate.
Length = 396
Score = 40.1 bits (94), Expect = 0.001
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
G T + T GN G +A+ A G K V+ MP ++ ER +RA GA+ +TD
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITD 166
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 39.9 bits (94), Expect = 0.001
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 174
G T T GN G +A+ A G K V+ MP +S ER +RA GA+ I+TD
Sbjct: 115 GDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITD----- 169
Query: 175 GG----TVKKAQELLESTPNAFMLQQFSNPANTRV------HFETTGPEIWEDTMGQVD- 223
G +V+ A + + ++Q + + + T E E + ++
Sbjct: 170 -GNYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQ-LKEMGV 226
Query: 224 ----IFVM-GIGS--GGTVSGVGQYLKSQNPNVKIYGVEPAESN-ILNGGKPG-PHLITG 274
+F+ G+GS G + + Q P+ + VEP +++ + G P +TG
Sbjct: 227 PPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVV--VEPDQADCLYQSAVDGKPVAVTG 284
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 37.9 bits (88), Expect = 0.004
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 84 KQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGY 140
K + QPT S KDR VA L++ G ++ +SGN +S+A + +G
Sbjct: 77 KLDYLQPTGSFKDRGTYVTVAKLKEE--------GINEVVIDSSGNAALSLALYSLSEGI 128
Query: 141 KMVLTMPSYTSLERRVTMRAFGADL 165
K+ + + S E+ + GA+L
Sbjct: 129 KVHVFVSYNASKEKISLLSRLGAEL 153
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 38.3 bits (89), Expect = 0.005
Identities = 62/232 (26%), Positives = 91/232 (39%), Gaps = 42/232 (18%)
Query: 52 TNIKRDVSQLIGR-TPLVFLNKVSEGCGAYIAVKQEMFQPTAS--IKDRPAVAMLEDAEN 108
KR + GR TPL ++S+ GA I +K+E T S I + A+L
Sbjct: 258 KTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLA---- 313
Query: 109 KNLISPGKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPS------YTSLERRVTMRAF 161
K + GKT II T +G G++ A A+ G K + M ++ER M+
Sbjct: 314 KRM---GKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVER---MKLL 367
Query: 162 GADLILTDPAKGMGGTVKKA-QELLE----STPNAFML-------QQFSNPANTRVHFET 209
GA++I P T+K A E + S P+ L + P
Sbjct: 368 GANVI---PVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPY--PEMVAYFQSV 422
Query: 210 TGPEIWEDTMGQV----DIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
G E E Q D + +G G G+ Y +P+VK+ GVE
Sbjct: 423 IGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF-YHFLDDPSVKLIGVEAG 473
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase) [Energy metabolism, Other].
Length = 376
Score = 37.2 bits (86), Expect = 0.007
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
G+ T T GN G +A+ A G K V+ MP ++ ER + GA+ +TD
Sbjct: 93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITD 147
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 35.8 bits (83), Expect = 0.021
Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 63 GR-TPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISP--GKTT 118
GR TPL F ++E G A I +K+E T + K + +A + L++ GK
Sbjct: 48 GRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHK-------INNALGQALLAKRMGKKR 100
Query: 119 IIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTSLERR----VTMRAFGADLILTDPAKG 173
II T +G G++ A AA+ G + M + +ER+ M GA +I P
Sbjct: 101 IIAETGAGQHGVATATAAALLGLDCEVYMGA-EDVERQKPNVFRMELLGAKVI---PVTS 156
Query: 174 MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF---ETTGPE------------IWEDT 218
GT+K A N + ++ +T H+ GP I E+
Sbjct: 157 GSGTLKDAV-------NEALRDWVTSVDDT--HYVLGSAVGPHPFPTMVRDFQSVIGEEA 207
Query: 219 MGQV--------DIFVMGIGSGGTVSGV-GQYLKSQNPNVKIYGVEPAESNI-------- 261
Q+ D + +G G G+ ++ +P+V++ GVE I
Sbjct: 208 KEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID--DPSVQLIGVEAGGLGIDTDKHAAT 265
Query: 262 LNGGKPG 268
L G PG
Sbjct: 266 LAKGSPG 272
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 35.6 bits (83), Expect = 0.026
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRP-AVAMLEDAE 107
LP T+ V+ G TPL+ +SE G + VK E PT S KDR +A+ + E
Sbjct: 16 LPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKE 75
Query: 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYK 141
G +I ++GN S A AA G K
Sbjct: 76 E------GAKAVICASTGNTSASAAAYAARAGLK 103
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 35.3 bits (82), Expect = 0.035
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 54/243 (22%)
Query: 62 IGR-TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAV--AMLEDAENKNLISPGKTT 118
GR TPL F +++E GA I +K+E T + K A+ A+L K + GKT
Sbjct: 53 AGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLA----KRM---GKTR 105
Query: 119 IIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT----MRAFGADLILTDPAKG 173
II T +G G++ A AA+ G + V+ M + +ER+ MR GA+++ P
Sbjct: 106 IIAETGAGQHGVATATAAALFGLECVIYMGA-EDVERQALNVFRMRLLGAEVV---PVTS 161
Query: 174 MGGTVKKA-QELL-------EST---------PNAF--MLQQFSNPANTRVHFETTGPEI 214
GT+K A E L E T P+ + +++ F V E +I
Sbjct: 162 GSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ-----SVIGEEAKAQI 216
Query: 215 WEDTMGQVDIFVMGIGSGGTVSGV-GQYLKSQNPNVKIYGVEPAESNI--------LNGG 265
E D V +G G G+ ++ + +V++ GVE A I L G
Sbjct: 217 LEKEGRLPDAVVACVGGGSNAIGIFHPFID--DESVRLIGVEAAGKGIETGKHAATLTAG 274
Query: 266 KPG 268
+PG
Sbjct: 275 RPG 277
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 33.8 bits (78), Expect = 0.096
Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 39/218 (17%)
Query: 65 TPL---VFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIE 121
TPL L+K + G + +K E QP+ S K R + L K ++
Sbjct: 2 TPLIESTALSKTA---GCNVFLKLENLQPSGSFKIR-GIGHLCQKSAKQ-GLNECVHVVC 56
Query: 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT-MRAFGADLILTDPAKGMGGTVKK 180
+ GN G++ A+ A G + +P T R V +R GA +++ G +
Sbjct: 57 SSGGNAGLAAAYAARKLGVPCTIVVPESTK-PRVVEKLRDEGATVVV------HGKVWWE 109
Query: 181 AQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWE-------------DTMGQVDIFV 226
A L +P VH F+ P IWE + +VD V
Sbjct: 110 ADNYLREE---LAEN---DPGPVYVHPFD--DPLIWEGHSSMVDEIAQQLQSQEKVDAIV 161
Query: 227 MGIGSGGTVSGVGQYLKSQNPN-VKIYGVEPAESNILN 263
+G GG ++G+ Q L+ + + VE ++ LN
Sbjct: 162 CSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLN 199
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 31.1 bits (71), Expect = 0.70
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 220 GQVDIFVMGIGSGGTVSG--------VGQYLKSQNPNVKIYGV 254
G V++FV+G SGGT SG + Q LK ++ NV+I G
Sbjct: 147 GGVNVFVVGSLSGGTGSGMLLDLAYLLRQILKKKSDNVRIGGY 189
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 31.1 bits (71), Expect = 0.76
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 63 GRTPLVFLNKVSEGCGAY-IAVKQEMFQPTASIKDRP-AVAMLEDAENKNLISPGKTTII 120
G TPL + + G + VK E PT S KDR V + + G T+
Sbjct: 66 GGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGV------TKALELGVKTVA 119
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPS 148
++GN S+A AA G K + +P+
Sbjct: 120 CASTGNTSASLAAYAARAGLKCYVLLPA 147
>gnl|CDD|145544 pfam02461, AMO, Ammonia monooxygenase. Ammonia monooxygenase plays
a key role in the nitrogen cycle and degrades a wide
range of hydrocarbons and halogenated hydrocarbons.
Length = 245
Score = 30.4 bits (69), Expect = 0.94
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 111 LISPGKTTII----EPTSGNMGISMAFMAAMKGYKMVLT-MPSYTSLERRVTMRAFGADL 165
L PG I+ +PT N G+ M+ +A + G+ V T P Y + R T+R FG D+
Sbjct: 154 LFYPGNWPILAPLHQPTEYN-GVLMS-LADLIGFHYVRTGTPEYIRMVERGTLRTFGKDV 211
Query: 166 I 166
+
Sbjct: 212 V 212
>gnl|CDD|184418 PRK13958, PRK13958, N-(5'-phosphoribosyl)anthranilate isomerase;
Provisional.
Length = 207
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 240 QYLKSQNPNVKIYGVEPAESNILN 263
Q +K + ++KI PA+ NI+
Sbjct: 91 QEIKKKYSSIKIIKALPADENIIQ 114
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 29.6 bits (66), Expect = 2.2
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 15/174 (8%)
Query: 83 VKQEMFQPTASIKDRPAV-AMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYK 141
+K E Q T S K R A+ A+L E + + +I ++GN +A+ A G +
Sbjct: 52 LKLENLQRTGSYKVRGALNALLAGLERGD-----ERPVICASAGNHAQGVAWSAYRLGVQ 106
Query: 142 MVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPA 201
+ MP + + +GA + A+EL + F L F +P
Sbjct: 107 AITVMPHGAPQTKIAGVAHWGA--TVRQHGNSYDEAYAFARELADQNGYRF-LSAFDDP- 162
Query: 202 NTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVE 255
+ T G E+ D+ ++ IG GG SGV LKSQ V++ G +
Sbjct: 163 DVIAGQGTVGIEL---AAHAPDVVIVPIGGGGLASGVALALKSQ--GVRVVGAQ 211
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 29.5 bits (67), Expect = 2.2
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 41 RLRDLPKDLPA-TNIKRDVSQLIGRTPLVFLNKVSEGCG-AYIAVKQEMFQPTASIKDR- 97
R RDL LP + D+ G TPLV ++++ G + +K + PT S KDR
Sbjct: 70 RYRDL---LPVPADNPVDLGP--GFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRV 124
Query: 98 PAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERR-- 155
+VA L A + L G TT+ ++GN+ S+A AA G + +P+ LE
Sbjct: 125 VSVA-LTAA--REL---GFTTVACASTGNLANSVAAHAARAGLDSCVFIPA--DLEAGKI 176
Query: 156 VTMRAFGADLI 166
V +G L+
Sbjct: 177 VGTLVYGPTLV 187
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 29.4 bits (66), Expect = 2.3
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 65 TPLVFLNKVSEGCGAYIAVKQEMFQPTA--SIKDRPAVAMLEDAENKNLISPGKTTIIEP 122
TP+ +L ++S+ G I +K++ A K R +L DA + G T+I
Sbjct: 8 TPIQYLPRLSDYLGREIYIKRDDLTGLAMGGNKIRKLEFLLADA-----LRKGADTVI-- 60
Query: 123 TSG----NMGISMAFMAAMKGYKMVL--------TMPSYTSLERRVTMRAFGADLILTDP 170
T+G N + A +AA G VL T +Y + FGA+ +
Sbjct: 61 TAGAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAETRIESC 120
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQ-----------FSNPANTRVHFETTGPEIWEDTM 219
+ + +EL E L++ SN + E EI +
Sbjct: 121 -EEYTDIDAQLEELAE------RLEKEGFKPYVIPVGGSNSLGALGYVEAAL-EIAQQLE 172
Query: 220 GQV--DIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254
+V D V+ GSGGT++G+ L P+V++ GV
Sbjct: 173 SEVKFDSIVVASGSGGTIAGLSLGLSHLMPDVELVGV 209
>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family.
This group resembles the zinc-dependent alcohol
dehydrogenases of the medium chain dehydrogenase family.
However, this subgroup does not contain the
characteristic catalytic zinc site. Also, it contains an
atypical structural zinc-binding pattern:
DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 29.2 bits (66), Expect = 2.3
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 168
+ PG+T ++ SGN GI +A M G +++ ++ R+ ++ FGAD ++
Sbjct: 160 LGPGETVVVFGASGNTGIFAVQLAKMMGAEVI-------AVSRKDWLKEFGADEVVD 209
>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 311
Score = 29.0 bits (65), Expect = 2.8
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 125 GNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM----RAFGADLILTDPAKG------- 173
G MG +A + A KG ++VL +LER + A L + G
Sbjct: 13 GTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAG 72
Query: 174 MGGTVKKAQELLESTPNAFMLQQ 196
+ V A ++E+ P L++
Sbjct: 73 LAAAVSGADLVIEAVPEKLELKR 95
>gnl|CDD|224649 COG1735, Php, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 316
Score = 28.9 bits (65), Expect = 3.8
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 96 DRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMK---GYKMVLTMPSYTS- 151
+ VA+ AE K L++ G TI++ T+ +G + M + G +V Y +
Sbjct: 43 EDDEVALA-IAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAA 101
Query: 152 -LERRVTMRAFG--ADLILTDPAKGMGGTVKKAQELLEST--PNAFMLQQFSNPANTRVH 206
+R A+ ++ + +G+ GT KA + E+ P L++ S A R H
Sbjct: 102 FHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAH 161
Query: 207 FETTGP-----EIWEDTMGQVDIF 225
ET P + Q+ I
Sbjct: 162 KETGAPISTHTPAGTMGLEQLRIL 185
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 28.6 bits (64), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 29 QPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVF 69
+ + SF Q +R LP LPA + +D+S T L F
Sbjct: 657 ESESEEEKSFTQLMRSLPDRLPA-EMAQDIS-----TSLAF 691
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 28.1 bits (63), Expect = 5.8
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 61 LIGR-TPLVFLNKVSEGCGAYIAVKQEMFQPTA--SIKDRPAVAMLEDAENKNLISPGKT 117
LI TP+ L ++S G I +K++ A K R +L +A + G
Sbjct: 11 LIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEA-----LRKGAD 65
Query: 118 TIIEPTSG----NMGISMAFMAAMKGYKMVLTM----PSYTSLERRVTMRAFGADLILTD 169
T++ T G N A +AA G K VL + +Y + + GA++ D
Sbjct: 66 TLV--TYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVD 123
Query: 170 PAKGMGGTV--KKAQELLESTPNAFML--QQFSNPANTRVHFETTGPEI--WEDTMGQVD 223
+G ++ E + + + S+P + EI + + + D
Sbjct: 124 AGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLAL-EIAEQAEQLLKFD 182
Query: 224 IFVMGIGSGGTVSGVGQYLKSQNPNVKIYGV 254
V+ GSGGT +G+ L P+V++ G+
Sbjct: 183 SVVVAPGSGGTHAGLLVGLAQLGPDVEVIGI 213
>gnl|CDD|168292 PRK05906, PRK05906, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 454
Score = 28.2 bits (63), Expect = 6.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 183 ELLESTPNAF--MLQQFSNPANTRVHFETTG 211
E L + PN+F + F R HF+ TG
Sbjct: 386 EELLALPNSFPAIFDLFGLSRKLRKHFKRTG 416
>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional.
Length = 287
Score = 27.7 bits (62), Expect = 8.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV-TMRAFGADLI 166
GK +I + G++ A + A G K+VL +L+R V +RA GA+++
Sbjct: 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVL 58
>gnl|CDD|233743 TIGR02136, ptsS_2, phosphate binding protein. Members of this
family are phosphate-binding proteins. Most are found in
phosphate ABC-transporter operons, but some are found in
phosphate regulatory operons. This model separates
members of the current family from the phosphate ABC
transporter phosphate binding protein described by
TIGRFAMs model TIGR00975 [Transport and binding
proteins, Anions].
Length = 287
Score = 27.4 bits (61), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 236 SGVGQYLKSQNPNVKIYGVEPAESNILNGGKP 267
G+G S +K+ GVEP++ NI NG P
Sbjct: 213 LGLGYVDDSVKT-LKVNGVEPSKENIANGSYP 243
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 27.5 bits (62), Expect = 9.9
Identities = 80/304 (26%), Positives = 118/304 (38%), Gaps = 76/304 (25%)
Query: 34 DSSSFAQRLRDLPKDLPATNIKRDVSQLIGR-TPLVFLNKVSEGC-GAYIAVKQEMFQPT 91
F LR L K +GR TPL ++SE GA I +K+E T
Sbjct: 43 KDPDFIAELRYLLK------------HYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHT 90
Query: 92 AS--IKDRPAVAMLEDAENKNLISPGKTTIIEPT-SGNMGISMAFMAAMKGYKMVLTMPS 148
+ I + A+L K + GK +I T +G G++ A AA+ G + + M
Sbjct: 91 GAHKINNCLGQALLA----KRM---GKKRLIAETGAGQHGVATATAAALFGLECEIYMGE 143
Query: 149 YTSLERR---VT-MRAFGADLILTDPAKGMGGTVKKA-----QELLESTPNAF------- 192
+ER+ V M+ GA+++ P G T+K+A ++ L+ N
Sbjct: 144 -VDIERQHPNVFRMKLLGAEVV---PVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVV 199
Query: 193 -------MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG----GTVSGVGQY 241
M++ F V E + E T D V +G G G S +
Sbjct: 200 GPHPFPMMVRDFQ-----SVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSA---F 251
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLIT----GNGV--GFKPDILDMDVMEKVLEV 295
L + +V++ GVEPA G G H T GV GFK +L + E V
Sbjct: 252 L--DDESVRLVGVEPAG----RGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGE-PAPV 304
Query: 296 SSIA 299
SIA
Sbjct: 305 HSIA 308
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,683,632
Number of extensions: 1507250
Number of successful extensions: 1597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1528
Number of HSP's successfully gapped: 92
Length of query: 307
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 210
Effective length of database: 6,635,264
Effective search space: 1393405440
Effective search space used: 1393405440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)