RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021775
(307 letters)
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 450 bits (1159), Expect = e-159
Identities = 152/296 (51%), Positives = 210/296 (70%), Gaps = 1/296 (0%)
Query: 2 AAALRSFLKKRALTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQL 61
+ + S A S M R+ S S NI +VSQL
Sbjct: 62 SPEISSLSFSSASDFSLAMK-RQSRSFADGSERDPSVVCEAVKRETGPDGLNIADNVSQL 120
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIE 121
IG+TP+V+LN +++GC A IA K E+ +P S+KDR +M+ DAE K ISPGK+ ++E
Sbjct: 121 IGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVE 180
Query: 122 PTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKA 181
PTSGN GI +AF+AA +GY+++LTMP+ S+ERRV ++AFGA+L+LTDPAKGM G V+KA
Sbjct: 181 PTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKA 240
Query: 182 QELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQY 241
+E+L++TP+A+MLQQF NPAN ++H+ETTGPEIW+DT G+VDIFV GIG+GGT++GVG++
Sbjct: 241 EEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRF 300
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297
+K +NP ++ GVEP ES+IL+GGKPGPH I G G GF P LD +M++V+ +SS
Sbjct: 301 IKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISS 356
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 441 bits (1138), Expect = e-157
Identities = 145/247 (58%), Positives = 195/247 (78%)
Query: 51 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKN 110
A+ I +DV++LIG TPLV+LN V+EGC +A K EM +P +S+KDR +M+ DAE K
Sbjct: 2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKG 61
Query: 111 LISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDP 170
LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+ S ERR+ + AFG +L+LTDP
Sbjct: 62 LIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIG 230
AKGM G + KA+E+L TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV GIG
Sbjct: 122 AKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIG 181
Query: 231 SGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVME 290
+GGT++G G+YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D+++
Sbjct: 182 TGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLID 241
Query: 291 KVLEVSS 297
+V++VSS
Sbjct: 242 EVVQVSS 248
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 438 bits (1128), Expect = e-156
Identities = 124/248 (50%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENK 109
+I D++QLIGRTPLV L +V++G A I K E F P S+KDR VAML+ AE
Sbjct: 2 SHMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQA 61
Query: 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
LI P T I+EPTSGN GI++A + A +GY+ VLTMP SLERR+ +RA+GA+LILT
Sbjct: 62 GLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTP 120
Query: 170 PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGI 229
A GM G + KA+EL ++ F+ QQF NPAN +H TT E+W DT G+VDI V G+
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGV 180
Query: 230 GSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVM 289
G+GGT++GV Q +K + P+ + VEPA S +L+GG+ GPH I G G GF P +LD D++
Sbjct: 181 GTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLV 240
Query: 290 EKVLEVSS 297
++++ V +
Sbjct: 241 DEIITVGN 248
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 438 bits (1129), Expect = e-156
Identities = 112/248 (45%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENK 109
+ N+ + + QLIG+TP ++LNK+ A + +K E P AS+KDR A+ + AE +
Sbjct: 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKE 65
Query: 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
+ PGK+ ++E +SGN G+S+A + A++GYK+++TMP SLERR +R FGA++ILT
Sbjct: 66 GKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 125
Query: 170 PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGI 229
A GM G V A++++ + PNA + QF+ N +H ETTGPEIWE T VD F+ G+
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 185
Query: 230 GSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVM 289
G+GGT++GV + LK + +I VEP ES +L+GGKPGPH I G G GF PD+LD ++
Sbjct: 186 GTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLI 245
Query: 290 EKVLEVSS 297
++VL V+
Sbjct: 246 DEVLCVAG 253
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 418 bits (1078), Expect = e-149
Identities = 119/241 (49%), Positives = 164/241 (68%), Gaps = 2/241 (0%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK- 116
V IG+TP+V L KV E A + VK E P SIKDRPA M++DAE + ++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
I+EPTSGN GI +A +AA +GY+++LTMP+ S ER+ ++AFGA+L+LTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
++A L E AFM QF NPAN R H+ETTGPE++E G++D FV G G+GGT++
Sbjct: 123 AREEALRLKE-ELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 237 GVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296
GVG+YLK + P+VK+ VEPA SN+L+GGK G H G G GF P+ LD+ +++ V++V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 297 S 297
Sbjct: 242 E 242
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 410 bits (1057), Expect = e-145
Identities = 104/261 (39%), Positives = 151/261 (57%), Gaps = 7/261 (2%)
Query: 42 LRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG----AYIAVKQEMFQPTASIKDR 97
+ + P I ++ + IG TPLV L+ V+E I VK E F P +S+KDR
Sbjct: 1 MEQISISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDR 60
Query: 98 PAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 157
++ A + PG IIE TSGN GI++ A+ GY++ + MPS S+ER++
Sbjct: 61 VGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119
Query: 158 MRAFGADLILTDPAKGMGGTVKKAQELLESTPNA-FMLQQFSNPANTRVHFETTGPEIWE 216
M+AFGA+LILT+ KGM G +++ ++++ P F+ QF NP NT H T EIWE
Sbjct: 120 MKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAH-HYTANEIWE 178
Query: 217 DTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNG 276
DT G+VDI V +G+ GTV GV + LK + +KI VEP ES +L G GPH I G G
Sbjct: 179 DTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIG 238
Query: 277 VGFKPDILDMDVMEKVLEVSS 297
GF PDI + +++++ + +
Sbjct: 239 AGFIPDIYKKEFVDEIIPIKT 259
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 397 bits (1023), Expect = e-140
Identities = 108/253 (42%), Positives = 156/253 (61%), Gaps = 11/253 (4%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLI 112
I D S IG TPLV L G + VK E P+ S+K R M+ AE +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
+ GK I++ TSGN GI++A++AA +GYK+ LTMP SLER+ + G +L+LT+ AK
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 173 GMGGTVKKAQELLESTPNAF-MLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
GM G + KA+E++ S P+ + ML+QF NPAN ++H ETTGPEIW+DT G+VD+ V G+G+
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 232 GGTVSGVGQYLKS-QNPNVKIYGVEPAESNILNGG------KPGPHLITGNGVGFKPDIL 284
GG+++G+ + +K + VEP ES +++ KPGPH I G G GF P L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 285 DMDVMEKVLEVSS 297
D+ ++++V V S
Sbjct: 239 DLSIIDRVETVDS 251
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 391 bits (1006), Expect = e-138
Identities = 122/246 (49%), Positives = 163/246 (66%), Gaps = 2/246 (0%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
+++LIG TP V LN++ + A + +K E P +S+KDR A+AM+E AE
Sbjct: 2 ARTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGK 61
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ PG TI+EPTSGN GI +A +AA KGYK VL MP SLERR +RA+GA+L+LT A
Sbjct: 62 LKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120
Query: 172 KGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
+GM G + KA+EL+ FM QQF N AN +H TTG EI E Q+D FV G+G+
Sbjct: 121 QGMRGAIAKAEELVR-EHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGT 179
Query: 232 GGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEK 291
GGT++G G+ L+ PN+KIY VEPA+S +L+GGKPGPH I G G GF PDILD + +
Sbjct: 180 GGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDG 239
Query: 292 VLEVSS 297
V+ V++
Sbjct: 240 VITVTT 245
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 370 bits (952), Expect = e-129
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 9/254 (3%)
Query: 45 LPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLE 104
+ D + + +LIG TP+V L+ + + I +K E P S+KDRPA+ M+
Sbjct: 1 MGSDKIHHHHHHMMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMIL 56
Query: 105 DAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAD 164
DAE + L+ G I+EPTSGNMGI++A + A +G++++LTMP S+ERR ++ GA+
Sbjct: 57 DAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAE 113
Query: 165 LILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
L+LT GM G V+KA E+ A ML QF NP N H TTGPEI + Q+D
Sbjct: 114 LVLTPGELGMKGAVEKALEISRE-TGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDA 172
Query: 225 FVMGIGSGGTVSGVGQYLKSQ-NPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDI 283
FV G+G+GGT+SGVG+ LK VKI VEPA+S +L+GG+PG H I G G GF P I
Sbjct: 173 FVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKI 232
Query: 284 LDMDVMEKVLEVSS 297
LD V+++V+ V
Sbjct: 233 LDRSVIDEVITVED 246
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 365 bits (939), Expect = e-127
Identities = 93/241 (38%), Positives = 143/241 (59%), Gaps = 9/241 (3%)
Query: 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK 116
+ Q IG TPLV L ++ G+ + +K E P S+KDR A++M+ +AE + I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
A E+ +L QF+NP N H+ TTGPEIW+ T G++ FV +G+ GT++
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 237 GVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296
GV ++++ Q+ V I G++P E + + G + P + P I + ++++VL++
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLPGIFNASLVDEVLDIH 233
Query: 297 S 297
Sbjct: 234 Q 234
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 360 bits (926), Expect = e-125
Identities = 95/252 (37%), Positives = 136/252 (53%), Gaps = 16/252 (6%)
Query: 53 NIKRDVSQLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLED 105
+ Q +G TPLV L ++S +G + K E PT SIKDRPAV M+E
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165
AE L+ PG TI+EPTSGN GIS+A A +KGY+++ MP TS+ERR + +GA +
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIF 225
I + G V A+EL + P+ ML Q+ NPANT H+ TGPE+ D ++ F
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181
Query: 226 VMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILD 285
V G+G+ GT+ G G++L+ NVKI EP G + + GF P++ D
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYD 234
Query: 286 MDVMEKVLEVSS 297
+++ V +
Sbjct: 235 PEILTARYSVGA 246
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 334 bits (859), Expect = e-113
Identities = 89/257 (34%), Positives = 140/257 (54%), Gaps = 11/257 (4%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAE 107
+ I D+ + IG TP+V +NK+ + G + K E F S+KDR ++ M+EDAE
Sbjct: 94 KSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 153
Query: 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167
+ PG TIIEPTSGN GI +A AA++GY+ ++ MP S E+ +RA GA+++
Sbjct: 154 RDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR 212
Query: 168 TD---PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
T V A L PN+ +L Q+ N +N H++TT EI + G++D+
Sbjct: 213 TPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDM 272
Query: 225 FVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES-----NILNGGKPGPHLITGNGVGF 279
V +G+GGT++G+ + LK + P +I GV+P S LN + + + G G F
Sbjct: 273 LVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF 332
Query: 280 KPDILDMDVMEKVLEVS 296
P +LD V++K + +
Sbjct: 333 IPTVLDRTVVDKWFKSN 349
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 337 bits (867), Expect = e-113
Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 11/257 (4%)
Query: 50 PATNIKRDVSQLIGRTPLVFLNKV--SEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAE 107
I ++ ++IG TPLV LN + S+G + K E P S+KDR M++DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167
+ L+ PG TIIEPTSGN GI +A A+KGYK ++ MP S E+ +R GA +I
Sbjct: 106 EQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR 164
Query: 168 TD---PAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDI 224
T G + AQ+L TPN+ +L Q+ N N H++ T EI +VD+
Sbjct: 165 TPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDM 224
Query: 225 FVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAES-----NILNGGKPGPHLITGNGVGF 279
V+ G+ GT+SG+G+ +K Q P+ +I GV+P S LN + + G G F
Sbjct: 225 IVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDF 284
Query: 280 KPDILDMDVMEKVLEVS 296
P + D V++ ++
Sbjct: 285 PPTVFDDTVVDVWTKIG 301
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 321 bits (825), Expect = e-109
Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 18/279 (6%)
Query: 23 RRLVSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIA 82
R+ +P ++ + D + TPLV G +
Sbjct: 56 SRIPVGDGCSHTLEELGVFDISVPGEMVFPSPL-DFFERGKPTPLVRSRLQ-LPNGVRVW 113
Query: 83 VKQEMFQPT-ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYK 141
+K E + P S+KDRPAV ++ + + G + + + TS N G++++ +A + GY+
Sbjct: 114 LKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYR 170
Query: 142 MVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPA 201
+ +P ++ R GA +I+ A + + + + + QF N A
Sbjct: 171 ARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSK-NEGFVHVNQFYNDA 229
Query: 202 NTRVHFETTGPEIWEDTMG---QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAE 258
N H T EI+ + + +G+ G +S YL+S +P+++ V+PA+
Sbjct: 230 NFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQ 289
Query: 259 SNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSS 297
+ + G I G I +D+ + EV+
Sbjct: 290 GDSIPG-------IRRVETGMLW-INMLDISYTLAEVTL 320
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 91.9 bits (229), Expect = 2e-21
Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 37/249 (14%)
Query: 30 PAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQ 89
V S + + + L +TP+ +S+ G + +K + Q
Sbjct: 12 SGLVPRGSHMASMTGGQQMGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQ 71
Query: 90 PTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY 149
P+ S K R K G + ++GN G++ A+ A G + +P
Sbjct: 72 PSGSFKIRGIGHFC-----KRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGT 126
Query: 150 TSLERRVTMRAFGADLILT----DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRV 205
T ++ GA + D A + A+ L ++ P +
Sbjct: 127 TPALTIERLKNEGATCKVVGELLDEAF------ELAKALAKNNPGW-----------VYI 169
Query: 206 H-FE---------TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQN-PNVKIYGV 254
F+ + E+ E + + +G GG + GV Q L+ +V + +
Sbjct: 170 PPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAM 229
Query: 255 EPAESNILN 263
E ++ +
Sbjct: 230 ETFGAHSFH 238
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 89.5 bits (223), Expect = 9e-21
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTT 118
+TP++ + V++ A + K E FQ + K R A ++ L +A+ K G
Sbjct: 24 ANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKA----G--- 76
Query: 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTV 178
++ +SGN ++A A + G + MP + + +G +I+ D
Sbjct: 77 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDRE 134
Query: 179 KKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMGQVDIFVMG 228
K A+E+ E + ++ T E++E+ +G +D +
Sbjct: 135 KMAKEISEREGLTI------------IPPYDHPHVLAGQGTAAKELFEE-VGPLDALFVC 181
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+G GG +SG + PN ++YGVEP N
Sbjct: 182 LGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 88.0 bits (219), Expect = 4e-20
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 32/212 (15%)
Query: 62 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISPGKTT 118
I TP++ + +++ G + K E+FQ T S K R A V L +
Sbjct: 23 IHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALER----KPKA 78
Query: 119 IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTV 178
++ +SGN G ++ + A ++G + +P +++ ++A+GA ++ +P+
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRE 136
Query: 179 KKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMGQVDIFVMG 228
A+ + E T VH + T E+ + VD V+
Sbjct: 137 NVAKRVTEETEGIM------------VHPNQEPAVIAGQGTIALEVLNQ-VPLVDALVVP 183
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+G GG ++G+ +K+ P+VK+Y EP+ ++
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNAD 215
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 86.6 bits (215), Expect = 2e-19
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 12/194 (6%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAEN 108
LP + V+ L G TPL+ +S+ G I +K E PT S KDR + DA
Sbjct: 23 LPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-- 80
Query: 109 KNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADLIL 167
++ G+ ++ ++GN S A AA G + +P ++ + GA +I
Sbjct: 81 ---LAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQ 137
Query: 168 TDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWEDTMGQVDIFV 226
D ++ A+++ P L NP R+ +T EI + D+
Sbjct: 138 ID--GNFDDCLELARKMAADFPTIS-LVNSVNPV--RIEGQKTAAFEIVDVLGTAPDVHA 192
Query: 227 MGIGSGGTVSGVGQ 240
+ +G+ G ++ +
Sbjct: 193 LPVGNAGNITAYWK 206
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 86.1 bits (214), Expect = 2e-19
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 43/220 (19%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
++ I +T + N SE C I +K E Q T S K R A ++ L +AE +
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRK---- 89
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 174
G ++ ++GN ++ AM G + MP + + A+++L
Sbjct: 90 G---VVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLH------ 140
Query: 175 GGTV----KKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMG 220
G K E++E+ F + ++ T G EI ED +
Sbjct: 141 GDNFNDTIAKVSEIVETEGRIF------------IPPYDDPKVIAGQGTIGLEIMED-LY 187
Query: 221 QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
VD ++ IG GG ++G+ +KS NP +K+ GV+ +
Sbjct: 188 DVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVH 227
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 83.0 bits (206), Expect = 2e-18
Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 38/218 (17%)
Query: 61 LIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTII 120
TPL+ +S+ G + +K E QP+ S K R + + G ++
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFC-----QEMAKKGCRHLV 58
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----DPAKGMGG 176
+ GN GI+ A+ A G + +P TSL+ ++ GA++ LT D A
Sbjct: 59 CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN---- 114
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMGQ-VDIF 225
+AQEL + V F+ + E+ +
Sbjct: 115 --LRAQELAKRDGWEN------------VPPFDHPLIWKGHASLVQELKAVLRTPPGALV 160
Query: 226 VMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILN 263
+ G G V L+ +V I +E ++ N
Sbjct: 161 LAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFN 198
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 83.4 bits (207), Expect = 2e-18
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 43/220 (19%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
V + +PL K+S+ G +K+E Q S K R A ++ L E
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDK---- 109
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----DP 170
G +I ++GN +A + MP+ T + +RA G D++L D
Sbjct: 110 G---VITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDE 166
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMG 220
A+ A EL E + + F+ T G EI +
Sbjct: 167 AQ------THALELSEKDGLKY------------IPPFDDPGVIKGQGTIGTEINRQ-LK 207
Query: 221 QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+ + +G GG ++GV + K PN KI GVEP +
Sbjct: 208 DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 82.9 bits (206), Expect = 2e-18
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 40/219 (18%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
++ RTPL+ + G + +K E Q T S K R A LE+ +
Sbjct: 14 IAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPK------- 66
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 174
G ++ +SGN +A+ A + G K ++ MP S ++ RA+GA+++
Sbjct: 67 G---LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--A 121
Query: 175 GGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDT---MGQ 221
+ A+ L E T A +H F+ T G E+
Sbjct: 122 KNREEVARALQEETGYAL------------IHPFDDPLVIAGQGTAGLELLAQAGRMGVF 169
Query: 222 VDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+ +G GG ++G+ +K+ +P + GVEP ++
Sbjct: 170 PGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 83.4 bits (207), Expect = 3e-18
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 43/220 (19%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPA---VAMLEDAENKNLISP 114
V + TPL + K+S I VK+E QP S K R A +A L + + +
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAH---- 80
Query: 115 GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT----DP 170
G +I ++GN +AF +A G K ++ MP+ T+ + +R FG +++L D
Sbjct: 81 G---VITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDE 137
Query: 171 AKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FE---------TTGPEIWEDTMG 220
AK KA EL + + V F+ T E+ +
Sbjct: 138 AK------AKAIELSQQQGFTW------------VPPFDHPMVIAGQGTLALELLQQ-DA 178
Query: 221 QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN 260
+D + +G GG +GV +K P +K+ VE +S
Sbjct: 179 HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 82.9 bits (205), Expect = 5e-18
Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 30/224 (13%)
Query: 64 RTPLVFLNKVSEGCG-AYIAVKQEMFQ-PTAS-------------IKDRPAVAMLE-DAE 107
TPL L+ ++ G I VK E + + + ++ + + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 108 NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIL 167
+ K T T GN G +A+ A G V+ MP ++ ER + GA+ I+
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 168 TDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHF------ETTGPEIWE---DT 218
TD TV+ + + ++Q + T++ T E E +
Sbjct: 164 TD--MNYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREM 220
Query: 219 MGQVDIFVMGIGSGGTVSGVGQYLKSQ--NPNVKIYGVEPAESN 260
++ G G GV YL N+ VEP +++
Sbjct: 221 GVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKAD 264
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 81.6 bits (202), Expect = 1e-17
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 15/195 (7%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDA 106
LP V+ G TPL+ + ++ G I +K E PT S KDR + A
Sbjct: 15 LPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKA 74
Query: 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT-SLERRVTMRAFGADL 165
GK +I ++GN S A AA G + + +P ++ + +GA +
Sbjct: 75 VEA-----GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKV 129
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWEDTMGQVDI 224
+ + +++ E+ P + NP R+ +T EI + D
Sbjct: 130 LAIQ--GTFDDALNIVRKIGENFP--VEIVNSVNPY--RIEGQKTAAFEICDTLGEAPDY 183
Query: 225 FVMGIGSGGTVSGVG 239
+ +G+ G ++
Sbjct: 184 HFIPVGNAGNITAYW 198
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 81.2 bits (201), Expect = 1e-17
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 17/196 (8%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLN--KVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDA 106
LP + +S L G TPL+ L + + G + K E PT S KDR + A
Sbjct: 13 LPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA 72
Query: 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRVTMRAFGADL 165
G + ++GN S A AA G ++ +P+ Y +L + GA +
Sbjct: 73 VEG-----GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARI 127
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWEDTMGQV-D 223
+ + ++ Q+L E+ P L NP R+ +T E+ ++ +G
Sbjct: 128 VQVE--GNFDDALRLTQKLTEAFP--VALVNSVNPH--RLEGQKTLAFEVVDE-LGDAPH 180
Query: 224 IFVMGIGSGGTVSGVG 239
+ +G+ G ++
Sbjct: 181 YHALPVGNAGNITAHW 196
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 79.4 bits (196), Expect = 9e-17
Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 11/195 (5%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDA 106
LP + VS G + L + + + + VK T S KD ++
Sbjct: 115 LPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQV 174
Query: 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRVTMRAFGADL 165
+ + ++G+ +++ A G ++ +P+ S+ + V A GA +
Sbjct: 175 NRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFV 234
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVH-FETTGPEIWEDTMGQV-D 223
+ D G +K +E+ P L N R+ +T EI + QV D
Sbjct: 235 LSID--TDFDGCMKLIREITAELP--IYLANSLNSL--RLEGQKTAAIEILQQFDWQVPD 288
Query: 224 IFVMGIGSGGTVSGV 238
++ G+ G +
Sbjct: 289 WVIVPGGNLGNIYAF 303
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 74.4 bits (183), Expect = 3e-15
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 62 IGRTPLVFLNKVSEGCGAY--------IAVKQEMFQP-TASIKDRPAV-AMLEDAEN--- 108
I + LV + + + + +K++ P + SIK R + +L AE
Sbjct: 76 IIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLAL 135
Query: 109 -----------KNLISP------GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 151
L+SP + +I ++GN+G+S+ M+A G+K+ + M +
Sbjct: 136 EAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAR 195
Query: 152 LERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANT-------- 203
++ +R+ G ++ + + G V++ ++ +S PN F N
Sbjct: 196 AWKKAKLRSHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAG 252
Query: 204 -RVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQ-NPNVKIYGVEPAESN 260
R+ + D + +++ G GG GV LK +V + EP S
Sbjct: 253 QRLKAQFAQQGRIVDADNPLFVYL-PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 60/332 (18%), Positives = 95/332 (28%), Gaps = 113/332 (34%)
Query: 2 AAALRSF-LKKRALTCSEPMLMRRLVSSQPAPVDSSSFAQRLRD-----LPKDLPATNIK 55
A + R L +L + P S A +L++ LP+ P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLV-----------PTASFFIASQLQEQFNKILPE--PTEGFA 49
Query: 56 RD-----VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENK- 109
D ++L+G+ FL Y++ E D+ L + EN
Sbjct: 50 ADDEPTTPAELVGK----FL--------GYVSSLVE--PSKVGQFDQVLNLCLTEFENCY 95
Query: 110 -----------NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM 158
L+ TT+++ + ++ A K S ++L R V
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKE----LIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 159 RA------FGADLILTDPAKGMGGTVKKAQELLE--STPNAF----------MLQQFS-N 199
FG G G T +EL + T + L +
Sbjct: 152 GNAQLVAIFG----------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 200 PANTRVHFETTGPEI--W---EDTMGQVDIFVMGIGSGGTVS----GVGQ---YLKSQNP 247
+ F T G I W D +S GV Q Y+ +
Sbjct: 202 TLDAEKVF-TQGLNILEWLENPSNTPDKDYL-----LSIPISCPLIGVIQLAHYVVT--- 252
Query: 248 NVKIYGVEPAE-SNILNGGKPGPHLITGNGVG 278
K+ G P E + L G TG+ G
Sbjct: 253 -AKLLGFTPGELRSYLKG-------ATGHSQG 276
Score = 35.8 bits (82), Expect = 0.020
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 25/68 (36%)
Query: 171 AKGMGGTVKKAQELLESTPNA---------FMLQQ--FS-------NPANTRVHFE-TTG 211
+GMG +L +++ A FS NP N +HF G
Sbjct: 1628 EQGMG------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 212 PEIWEDTM 219
I E+
Sbjct: 1682 KRIRENYS 1689
Score = 29.2 bits (65), Expect = 2.4
Identities = 28/221 (12%), Positives = 52/221 (23%), Gaps = 104/221 (47%)
Query: 89 QP---TASIKDRPAVAMLEDAENKNLISP------------------------------- 114
QP A ED ++K LI
Sbjct: 1733 QPALTLME------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 115 ---GKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
G T + +G S M A+ ++ + S +L+ V
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-SQEALQYVVERVG----------- 1834
Query: 172 KGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
K+ L+E N + Q V +
Sbjct: 1835 -------KRTGWLVE-------------IVN----YNVEN--------QQY---V----A 1855
Query: 232 GGTVSGVGQ------YLKSQN-PNVKI---YGVEPAESNIL 262
G + + ++K Q +++ +E E ++
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 28.9 bits (64), Expect = 2.6
Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 60/181 (33%)
Query: 2 AAALRSF-LKKRALTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLP-------------- 46
+L L R + R+ S+ S+ F LP
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF------LPVASPFHSHLLVPAS 436
Query: 47 ----KDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAM 102
KDL N+ + + + P V+ G+ + + + + SI +R +
Sbjct: 437 DLINKDLVKNNVSFNAKDI--QIP-VY----DTFDGSDL---RVL---SGSISERIVDCI 483
Query: 103 LE-----DAENKNLIS------PGKTTIIEP-TSGNM---GISMAFMAAMK-------GY 140
+ + + + PG + + T N G+ + + G+
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Query: 141 K 141
K
Sbjct: 544 K 544
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 40.6 bits (95), Expect = 4e-04
Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 31/217 (14%)
Query: 65 TPLVFLNKVSE--GCGAYIAVKQEMFQPTASI---KDRPAVAMLEDAENKNLISPGKTTI 119
TP+ L ++S+ G ++ K+E + K R ++ +A + G T+
Sbjct: 16 TPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQ-----GCDTL 70
Query: 120 IEPTSG----NMGISMAFMAAMKGYKMVLTMPSYTSLERRVT--------MRAFGADLIL 167
+ + G N +A +AA G K VL ++ + V R GAD+ L
Sbjct: 71 V--SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRL 128
Query: 168 TDPAKGMGGTV---KKAQELLESTPNAFML----QQFSNPANTRVHFETTGPEIWEDTMG 220
+G + + + + + V F +
Sbjct: 129 VPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGF 188
Query: 221 QVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
+ D V+ +G T +G+ + ++ GV+ +
Sbjct: 189 KFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDAS 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 87/295 (29%)
Query: 32 PVDSSSFAQRL--RDLPKDLPATNI-KRDVSQLIG------RTPLVFLNKVSEGCGAYIA 82
V +F +D+ D+P + + K ++ +I T +F +S+
Sbjct: 23 SVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-- 79
Query: 83 VKQEMFQPTASIKDRPAVAMLEDAENKN---LISPGKTTIIEPTSGNMGISMAFMAAM-K 138
+ F +E+ N L+SP KT +P+ ++ ++ +
Sbjct: 80 ---QKF--------------VEEVLRINYKFLMSPIKTEQRQPS----MMTRMYIEQRDR 118
Query: 139 GYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK-----GMGGTVKK--AQELLESTPNA 191
Y Y ++ R L+ PAK G+ G+ K A ++ S
Sbjct: 119 LYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK-- 175
Query: 192 FMLQQFSNPANTRVHFETTGPEIW---------EDTMGQVDIFVMGIGSGGTVSGVGQYL 242
+ + ++ W E + + + I T +
Sbjct: 176 -VQCKMDF----KIF--------WLNLKNCNSPETVLEMLQKLLYQIDPNWTS----RSD 218
Query: 243 KSQNPNVKIYGVEPAESNILNGGKPGPH-LITGNGVGFKPDILDMDVME-KVLEV 295
S N ++I+ ++ +L KP + L+ +L +V K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLK-SKPYENCLL----------VLL-NVQNAKAWNA 261
Score = 36.4 bits (83), Expect = 0.012
Identities = 30/244 (12%), Positives = 56/244 (22%), Gaps = 79/244 (32%)
Query: 18 EPMLMRRLVSSQPAPVDSSSFAQRLRDLPKDLPATN---IKRDVSQLIGRTPLVFLNKVS 74
+P R S + S LR L K P N + +V + N +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKA-WNAFN 263
Query: 75 EGC-----------------GAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS---- 113
C + + T L E K+L+
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----------LTPDEVKSLLLKYLD 312
Query: 114 ------PGKTTIIEPTSGNMGISMAFMAAM--------KGYKMVLTMP-------SYTSL 152
P + P +S+ +A +K V S L
Sbjct: 313 CRPQDLPREVLTTNP----RRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 153 ERRVTMRAFGADL-ILTD----PAKGMG-----GTVKKAQELLESTPNAFMLQQFSNPAN 202
E + F L + P + ++ ++++ +
Sbjct: 367 EPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 203 TRVH 206
+
Sbjct: 426 ISIP 429
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 34.0 bits (77), Expect = 0.050
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 14/123 (11%)
Query: 111 LISPGKTTI-IEPT---------SGNMGISMAFMAAMKGYKMVL--TMPSYTSLERRVTM 158
L++ G T + +E SG G + A GY ++ S R
Sbjct: 41 LVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPP 100
Query: 159 RAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANT--RVHFETTGPEIWE 216
+ + + L + PA +++ + L A Q + A T V F T +
Sbjct: 101 QTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHL 160
Query: 217 DTM 219
Sbjct: 161 LQA 163
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 32.6 bits (75), Expect = 0.14
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 28/94 (29%)
Query: 110 NLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTD 169
+ ++ K TI+ +G +G +MA AAM +L L D
Sbjct: 4 SYLTEEKLTIVG-AAGMIGSNMAQTAAMMR---------------------LTPNLCLYD 41
Query: 170 PAKGM--GGTVKKAQELLESTPNAFMLQQFSNPA 201
P G A+E+ L S+
Sbjct: 42 PFAVGLEG----VAEEIRHCGFEGLNLTFTSDIK 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.29
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 84 KQEMFQPTASIK----DR-PAVAM---LE 104
KQ + + AS+K D PA+A+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 2.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 16/43 (37%)
Query: 18 EPMLMRRLVSS-QP-APVDSSSFAQRLRDLPKDLPATNIKRDV 58
E +++L +S + A DS+ PA IK +
Sbjct: 18 EKQALKKLQASLKLYAD-DSA-------------PALAIKATM 46
Score = 26.8 bits (58), Expect = 6.3
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 240 QYLKSQNPNVKIYGVE--PA 257
Q LK ++K+Y + PA
Sbjct: 20 QALKKLQASLKLYADDSAPA 39
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
binding, STAM2, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2l0t_B
Length = 163
Score = 30.7 bits (69), Expect = 0.31
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 240 QYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNG-----VGFKPDILDMDVMEKVLE 294
+ + + P+V + + + + N GK + + V EK+
Sbjct: 59 KRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKS 118
Query: 295 V 295
+
Sbjct: 119 L 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 30.1 bits (67), Expect = 0.76
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKP-----GPHLITGNGVGFKPDILDMDVMEKVLEV 295
+ S NP+ Y + ES + N G P F +V +K+LE+
Sbjct: 51 MNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLEL 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 29.3 bits (65), Expect = 1.2
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKP-----GPHLITGNGVGFKPDILDMDVMEKVLEV 295
+ +NP+V +Y +E ES + N G+ ++++V K+L +
Sbjct: 54 VNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYL 112
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding,
cytoplasm, UBL conjugation, endosome, membrane, protein
transport, SH3 domain; 2.60A {Homo sapiens}
Length = 140
Score = 28.7 bits (64), Expect = 1.4
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLITG----NGVGFKPDILDMDVMEKVLEV 295
+ ++P+V + + + + N GK + + V + V EK+ +
Sbjct: 51 VNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKAL 108
>3rfr_J PMOA; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_B
Length = 252
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 131 MAFMAAMKGYKMVLT-MPSYTSLERRVTMRAFGAD 164
+ +A + G V T MP Y + R T+R FG D
Sbjct: 182 LMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKD 216
>1yew_B Particulate methane monooxygenase, A subunit; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_B
Length = 247
Score = 29.2 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 MAAMKGYKMVLT-MPSYTSLERRVTMRAFGAD 164
+A ++GY V T P Y + + T+R FG D
Sbjct: 180 IADIQGYNYVRTGTPEYIRMVEKGTLRTFGKD 211
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.5 bits (63), Expect = 2.1
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 215 WEDTMGQVDIFVMGIGSGGTVSGVGQYLKS---QNPNVKIYGVEPAESNILN 263
+E Q D V+ +G+G G++ QNP+ + ++ +S +
Sbjct: 20 FEQLRSQYDDVVLDVGTGD-----GKHPYKVARQNPSRLVVALDADKSRMEK 66
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A
{Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A*
2br5_A* 2br4_A* 2br3_A*
Length = 236
Score = 28.2 bits (62), Expect = 2.8
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 214 IWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLIT 273
+WE + I +G+ +GG+++ K + ++ G++ S ++
Sbjct: 77 LWE--LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITL 134
Query: 274 GNGVGFKPDILDMDVMEKVLEVSSI 298
G D D+ E + E++
Sbjct: 135 HQG-----DCSDLTTFEHLREMAHP 154
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 28.6 bits (65), Expect = 2.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 203 TRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
R + GP + D V+G GSGG S
Sbjct: 2 CRQEPQPQGPPPAAGAVASYDYLVIGGGSGGLAS 35
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 27.6 bits (61), Expect = 4.0
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNG--------VGFKPDILDMDVMEKVL 293
+ ++N + + + E+ + N G L+ + V +KVL
Sbjct: 63 VGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122
Query: 294 EV 295
+
Sbjct: 123 NL 124
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 28.3 bits (63), Expect = 4.0
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 227 MGIGSGGTVSGVGQYLKSQNPNVKIYGVEP 256
MG ++ + ++ NPN+ + G E
Sbjct: 651 MGDHDAASIEEAYKAARALNPNLIMLG-EG 679
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 27.7 bits (61), Expect = 5.5
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 89 QPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAM---KGYKMVLT 145
R A+A + + G TI++ ++ ++G ++ +A + +V
Sbjct: 34 AWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAA 93
Query: 146 MPSYTSLERRVTMRAFG--ADLILTDPAKGMGGTVKKA 181
+ + +R+ L + G+ T +A
Sbjct: 94 TGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRA 131
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 27.7 bits (62), Expect = 6.3
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 227 MGIGSGGTVSGVGQYLKSQNPNVKIYGVEP 256
MG ++ + ++ NPN+ + G E
Sbjct: 344 MGDHDAASIEEAYKAARALNPNLIMLG-EG 372
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 27.2 bits (61), Expect = 6.6
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 33/110 (30%)
Query: 198 SNPANTRVHFETTGPEIWEDTMGQVDIFVMG-------IGSG-----GT------VSGVG 239
+ +++R F G VD+F G G GT V+GV
Sbjct: 179 TTSSDSRSSFSNWGSC--------VDLFAPGSQIKSAWYDGGYKTISGTSMATPHVAGVA 230
Query: 240 QYLKSQNPN-----VKIYGVEPAESNILNGGKPGPHLI--TGNGVGFKPD 282
+N + A N ++ + + + + G +PD
Sbjct: 231 ALYLQENNGLTPLQLTGLLNSRASENKVSDTRGTTNKLLYSLADSGCEPD 280
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein
transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Length = 148
Score = 26.4 bits (58), Expect = 7.6
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGV----------GFKPDILDMDVMEK 291
++S +Y + E + + G+ + + V +
Sbjct: 47 IQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106
Query: 292 VLEV 295
V+E+
Sbjct: 107 VIEI 110
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 26.7 bits (59), Expect = 7.8
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 92 ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 151
++ DA + ++SPG T + I A + G + +P +
Sbjct: 70 GTVCTADDFQKAIDAGAQFIVSPGLTPEL--------IEKAKQVKLDGQWQGVFLPGVAT 121
Query: 152 LERRVTMRAFGADLILTDPAKGMGG 176
+ G + PA +GG
Sbjct: 122 ASEVMIAAQAGITQLKCFPASAIGG 146
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A
{Archaeoglobus fulgidus} SCOP: c.116.1.8
Length = 178
Score = 26.7 bits (59), Expect = 8.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 157 TMRAFGAD-LILTDPAKGMGGTVKKAQE 183
T RAFGA + K + +V+ E
Sbjct: 27 TARAFGAKGIYFDTEDKSVFESVRDVVE 54
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.5 bits (58), Expect = 8.9
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 14 LTCSEPMLMRRLVSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQL 61
L +++ RL V+ + RL +L + T+I D + L
Sbjct: 111 LIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGEQFQTHI--DTAGL 156
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide
compelx, VHS domain, DXXLL sorting signal, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB:
1jpl_A 1lf8_A*
Length = 171
Score = 26.5 bits (58), Expect = 9.1
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 242 LKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGV----------GFKPDILDMDVMEK 291
++S + + E+ + N G+ + + + D + V K
Sbjct: 59 IQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118
Query: 292 VLEV 295
V+E+
Sbjct: 119 VIEL 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,605,314
Number of extensions: 278274
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 84
Length of query: 307
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 214
Effective length of database: 4,105,140
Effective search space: 878499960
Effective search space used: 878499960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)