RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021775
(307 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 203 bits (516), Expect = 4e-64
Identities = 144/251 (57%), Positives = 194/251 (77%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I +DV++LIG TPLV+LN V+EGC +A K EM +P +S+KDR +M+ DAE K LI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+ S ERR+ + AFG +L+LTDPAKG
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 174 MGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGG 233
M G + KA+E+L TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV GIG+GG
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 234 TVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVL 293
T++G G+YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D++++V+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 294 EVSSIANAQTI 304
+VSS +
Sbjct: 243 QVSSDESIDMA 253
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 182 bits (462), Expect = 2e-56
Identities = 114/241 (47%), Positives = 156/241 (64%), Gaps = 9/241 (3%)
Query: 57 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK 116
+ +LIG TP+V L+ + + I +K E P S+KDRPA+ M+ DAE + L+ G
Sbjct: 3 MMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG- 57
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
I+EPTSGNMGI++A + A +G++++LTMP S+ERR ++ GA+L+LT GM G
Sbjct: 58 --IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG 115
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
V+KA E+ T A ML QF NP N H TTGPEI + Q+D FV G+G+GGT+S
Sbjct: 116 AVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTIS 174
Query: 237 GVGQYLKSQNPN-VKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEV 295
GVG+ LK N VKI VEPA+S +L+GG+PG H I G G GF P ILD V+++V+ V
Sbjct: 175 GVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITV 234
Query: 296 S 296
Sbjct: 235 E 235
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 170 bits (431), Expect = 1e-51
Identities = 116/236 (49%), Positives = 160/236 (67%), Gaps = 2/236 (0%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGK- 116
V IG+TP+V L KV E A + VK E P SIKDRPA M++DAE + ++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 117 TTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG 176
I+EPTSGN GI +A +AA +GY+++LTMP+ S ER+ ++AFGA+L+LTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 177 TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVS 236
++ L+ AFM QF NPAN R H+ETTGPE++E G++D FV G G+GGT++
Sbjct: 123 AREE-ALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 237 GVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKV 292
GVG+YLK + P+VK+ VEPA SN+L+GGK G H G G GF P+ LD+ +++ V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGV 237
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 166 bits (420), Expect = 5e-50
Identities = 101/247 (40%), Positives = 146/247 (59%), Gaps = 11/247 (4%)
Query: 54 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLIS 113
I D S IG TPLV L + VK E P+ S+K R M+ AE ++
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNGN--VVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 114 PGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKG 173
GK I++ TSGN GI++A++AA +GYK+ LTMP SLER+ + G +L+LT+ AKG
Sbjct: 60 KGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118
Query: 174 MGGTVKKAQE-LLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSG 232
M G + KA+E + ML+QF NPAN ++H ETTGPEIW+DT G+VD+ V G+G+G
Sbjct: 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 178
Query: 233 GTVSGVGQYLKSQ-NPNVKIYGVEPAESNILNGGKPG------PHLITGNGVGFKPDILD 285
G+++G+ + +K + VEP ES +++ G PH I G G GF P LD
Sbjct: 179 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 238
Query: 286 MDVMEKV 292
+ ++++V
Sbjct: 239 LSIIDRV 245
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 164 bits (415), Expect = 8e-49
Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 17/273 (6%)
Query: 34 DSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPT 91
+S PK I D+ + IG TP+V +NK+ + G + K E F
Sbjct: 20 ESPHHHTAPAKSPK------ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAG 73
Query: 92 ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 151
S+KDR ++ M+EDAE + PG T IIEPTSGN GI +A AA++GY+ ++ MP S
Sbjct: 74 GSVKDRISLRMIEDAERDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMS 132
Query: 152 LERRVTMRAFGADLILTDPAKGMG---GTVKKAQELLESTPNAFMLQQFSNPANTRVHFE 208
E+ +RA GA+++ T V A L PN+ +L Q+ N +N H++
Sbjct: 133 SEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYD 192
Query: 209 TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGG--- 265
TT EI + G++D+ V +G+GGT++G+ + LK + P +I GV+P S +
Sbjct: 193 TTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELN 252
Query: 266 --KPGPHLITGNGVGFKPDILDMDVMEKVLEVS 296
+ + + G G F P +LD V++K + +
Sbjct: 253 QTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSN 285
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 155 bits (393), Expect = 4e-46
Identities = 112/254 (44%), Positives = 163/254 (64%), Gaps = 13/254 (5%)
Query: 52 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNL 111
+ I D S IG TPLV LN++ I K E P+ S+K R M+ DAE + +
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 112 ISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPA 171
+ PG ++EPT+GN GI++A++AA +GYK+ LTMP S+ERR ++A GA+L+LT+ A
Sbjct: 58 LKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 172 KGMGGTVKKAQELLEST-PNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIG 230
KGM G ++KA+E++ S +LQQFSNPAN +H +TTGPEIWEDT GQVD+F+ G+G
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 231 SGGTVSGVGQYLKSQNPN--VKIYGVEPAESNILNGGK------PGPHLITGNGVGFKPD 282
+GGT++GV +Y+K + VEP +S ++ PGPH I G G GF P
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 283 ILDMDVMEKVLEVS 296
LD+ +++KV+ ++
Sbjct: 237 NLDLKLIDKVVGIT 250
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 131 bits (330), Expect = 5e-37
Identities = 91/243 (37%), Positives = 139/243 (57%), Gaps = 7/243 (2%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ Q IG TPLV L ++ G+ + +K E P S+KDR A++M+ +AE + I PG
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD- 61
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
+IE TSGN GI++A +AA+KGY+M L MP S ERR MRA+GA+LIL +GM
Sbjct: 62 VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGM-EG 120
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSG 237
+ + + +L QF+NP N H+ TTGPEIW+ T G++ FV +G+ GT++G
Sbjct: 121 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180
Query: 238 VGQYLKSQNPNVKIYGVEPAESNILNGGKPG-----PHLITGNGVGFKPDILDMDVMEKV 292
V ++++ Q+ V I G++P E + + G + P + + V DI D +
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTM 240
Query: 293 LEV 295
E+
Sbjct: 241 REL 243
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 128 bits (323), Expect = 1e-35
Identities = 58/258 (22%), Positives = 99/258 (38%), Gaps = 18/258 (6%)
Query: 29 QPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMF 88
QP + A+ LR + ++ V + TPL + K+S I VK+E
Sbjct: 1 QPLS-GAPEGAEYLRAV--------LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDR 51
Query: 89 QPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS 148
QP S K R A AM+ + +I ++GN +AF +A G K ++ MP+
Sbjct: 52 QPVHSFKLRGAYAMMAGLTEEQ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPT 107
Query: 149 YTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFE 208
T+ + +R FG +++L L + F +P + +
Sbjct: 108 ATADIKVDAVRGFGGEVLLHGANFDEAKAK---AIELSQQQGFTWVPPFDHP--MVIAGQ 162
Query: 209 TTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPG 268
T +D + +G GG +GV +K P +K+ VE +S L
Sbjct: 163 GTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDA 222
Query: 269 PHLITGNGVGFKPDILDM 286
H + VG + + +
Sbjct: 223 GHPVDLPRVGLFAEGVAV 240
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 119 bits (300), Expect = 7e-32
Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 17/250 (6%)
Query: 50 PATNIKRDVSQLIGR---TPLVFLNKVSEGCGAYIAVKQEMFQPT-ASIKDRPAVAMLED 105
P + R TPLV + G + +K E + P S+KDRPAV ++
Sbjct: 78 PGEMVFPSPLDFFERGKPTPLVRSR-LQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISR 136
Query: 106 AENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 165
+ + G + + + TS N G++++ +A + GY+ + +P ++ R GA +
Sbjct: 137 LSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQV 193
Query: 166 ILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMG---QV 222
I+ A + + + QF N AN H T EI+ + +
Sbjct: 194 IVDPEAPSTVHLLPR-VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLAL 252
Query: 223 DIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPD 282
+G+ G +S YL+S +P+++ V+PA+ + + G + G+ +
Sbjct: 253 RGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVET-----GMLWINM 307
Query: 283 ILDMDVMEKV 292
+ + +V
Sbjct: 308 LDISYTLAEV 317
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 115 bits (287), Expect = 2e-30
Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT 117
+ + +TP++ + V++ A + K E FQ + K R A+ L K
Sbjct: 15 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ----RKA 70
Query: 118 TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT 177
++ +SGN ++A A + G + MP + + +G +I+ D K
Sbjct: 71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD--R 128
Query: 178 VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSG 237
K A+E+ E ++ + +P + T E++E+ +G +D + +G GG +SG
Sbjct: 129 EKMAKEISER-EGLTIIPPYDHP-HVLAGQGTAAKELFEE-VGPLDALFVCLGGGGLLSG 185
Query: 238 VGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPD 282
+ PN ++YGVEP N ++ + D
Sbjct: 186 SALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIAD 230
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 92.4 bits (228), Expect = 4e-22
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 12/203 (5%)
Query: 56 RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPG 115
R ++ RTPL+ + G + +K E Q T S K R A++ EN
Sbjct: 11 RRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPK----- 65
Query: 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG 175
++ +SGN +A+ A + G K ++ MP S ++ RA+GA+++
Sbjct: 66 --GLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN- 122
Query: 176 GTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE--DTMGQVDIFVMGIGSGG 233
+ A+ L E ++ F +P + + + +G GG
Sbjct: 123 -REEVARALQEE-TGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG 180
Query: 234 TVSGVGQYLKSQNPNVKIYGVEP 256
++G+ +K+ +P + GVEP
Sbjct: 181 LLAGLATAVKALSPTTLVLGVEP 203
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 92.1 bits (227), Expect = 6e-22
Identities = 34/241 (14%), Positives = 70/241 (29%), Gaps = 27/241 (11%)
Query: 58 VSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASI---KDRPAVAMLEDAENKNLI 112
G TP+ L ++S+ G ++ K+E + K R ++ +A +
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQ--- 65
Query: 113 SPGKTTII--EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT-- 168
G T++ N +A +AA G K VL ++ + V R +
Sbjct: 66 --GCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILG 123
Query: 169 --------DPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTM- 219
G + + A E + + + G
Sbjct: 124 ADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQE 183
Query: 220 ----GQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGN 275
+ D V+ +G T +G+ + ++ GV+ + +
Sbjct: 184 AELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTA 243
Query: 276 G 276
Sbjct: 244 E 244
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 91.7 bits (226), Expect = 8e-22
Identities = 37/267 (13%), Positives = 69/267 (25%), Gaps = 31/267 (11%)
Query: 58 VSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASI---KDRPAVAMLEDAENKNLI 112
G +P+ LN++S+ G + K+E + K R ++ D +
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD-- 66
Query: 113 SPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAK 172
I N +A +AA G K VL + + I
Sbjct: 67 -YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125
Query: 173 GMGGTVKKA---------------QELLESTPNAFMLQQFSNPAN---TRVHFETTGPEI 214
G V + + + S V F
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 215 WEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESN-----ILNGGKPGP 269
+ + D V+ +G T +G+ + + ++ + ++
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNT 245
Query: 270 HLITGNGVGFKPDILDMDVMEKVLEVS 296
+ G FK LD V
Sbjct: 246 AKLIGVEHEFKDFTLDTRFAYPCYGVP 272
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 91.7 bits (226), Expect = 9e-22
Identities = 51/266 (19%), Positives = 90/266 (33%), Gaps = 22/266 (8%)
Query: 40 QRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKV--SEGCGAYIAVKQEMFQPTASIKDR 97
+R R+L LP + +S L G TPL+ L + G + K E PT S KDR
Sbjct: 7 ERYRNL---LPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDR 63
Query: 98 PAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPS-YTSLERRV 156
+ A G + ++GN S A AA G ++ +P+ Y +L +
Sbjct: 64 GMTLAVSKAVE-----GGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVA 118
Query: 157 TMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWE 216
GA ++ G + + T + S + +T E+ +
Sbjct: 119 QSLVHGARIVQV-----EGNFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVD 173
Query: 217 DTMGQVDIFVMGIGSGGTVS------GVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPH 270
+ + +G+ G ++ L ++ G + A + L G+P
Sbjct: 174 ELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
Query: 271 LITGNGVGFKPDILDMDVMEKVLEVS 296
T + + E S
Sbjct: 234 PETLATAIRIGNPASWQGAVRAKEES 259
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 89.1 bits (219), Expect = 5e-21
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 7/192 (3%)
Query: 61 LIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTII 120
L +TP+ +S+ G + +K + QP+ S K R + + G +
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-----GCAHFV 58
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKK 180
++GN G++ A+ A G + +P T ++ GA + +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAF--EL 116
Query: 181 AQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQ 240
A+ L ++ P + F +P H I + G G V
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176
Query: 241 YLKSQNPNVKIY 252
+ +V +
Sbjct: 177 LQECGWGDVPVI 188
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 86.3 bits (212), Expect = 5e-20
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 9/253 (3%)
Query: 58 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQ--PTASIKDRPAVAMLEDAENKNLISPG 115
V + TP+ +L +S GA + +K++ K R +L DA +K
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 116 KTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMG 175
+ N A G +L + L+ + AK
Sbjct: 75 ---TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131
Query: 176 GTVKKAQEL----LESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGS 231
+K A+E+ +++ + + EI + + D V+ GS
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191
Query: 232 GGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEK 291
GGT++G+ L N +++ G+ + K + + + ++ +
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDY 251
Query: 292 VLEVSSIANAQTI 304
+
Sbjct: 252 SFGEYGKITGEVA 264
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 86.5 bits (213), Expect = 8e-20
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 31/252 (12%)
Query: 34 DSSSFAQRLRDLPKDLPATNIKRDVSQLIGR-TPLVFLNKVSEGC-GAYIAVKQEMFQPT 91
D F ++L K GR TPL + +++E GA I +K+E
Sbjct: 31 DDEEFNRQLNYYLKTW------------AGRPTPLYYAKRLTEKIGGAKIYLKREDLVHG 78
Query: 92 ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSY-- 149
+ K A+ A+ I E +G G++ A A+ G K+ + M +
Sbjct: 79 GAHKTNNAIGQALLAKFMG----KTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDV 134
Query: 150 -TSLERRVTMRAFGADLILTDP-AKGMGGTVKKAQELLESTP------NAFMLQQFSNPA 201
M+ GA++I + ++ + + +A +T ++ P
Sbjct: 135 ERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPT 194
Query: 202 NTRVHFETTGPEI---WEDTMGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAE 258
R G E + GQ+ ++ GG+ + Y + VK+ GVE
Sbjct: 195 IVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGG 254
Query: 259 SNILNGGKPGPH 270
+ +G
Sbjct: 255 KGLESGKHSASL 266
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 86.6 bits (213), Expect = 1e-19
Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 5/197 (2%)
Query: 49 LPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDA 106
LP + VS G + L + + + + VK T S KD ++
Sbjct: 106 LPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQV 165
Query: 107 ENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 166
+ + ++G+ +++ A G ++ +P + ++
Sbjct: 166 NRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLP-ANKISMAQLVQPIANGAF 224
Query: 167 LTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFV 226
+ G +K +E + L N + + D +
Sbjct: 225 VLSIDTDFDGCMKLIRE--ITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVI 282
Query: 227 MGIGSGGTVSGVGQYLK 243
+ G+ G + + K
Sbjct: 283 VPGGNLGNIYAFYKGFK 299
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 75.7 bits (185), Expect = 5e-16
Identities = 34/209 (16%), Positives = 56/209 (26%), Gaps = 16/209 (7%)
Query: 62 IGR-TPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTII 120
GR T L ++ G + +K+E + K + A+ T
Sbjct: 52 AGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111
Query: 121 EPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKK 180
G + + +K + MR GA++I G
Sbjct: 112 G-QHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS--GSATLKDA 168
Query: 181 AQELLESTP---------NAFMLQQFSNPANTRVHFETTGPEI---WEDTMGQVDIFVMG 228
E L P R G E D G++ V+
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 229 IGSGGTVSGVGQYLKSQNPNVKIYGVEPA 257
GG+ + + +V + GVEP
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPG 257
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 35.2 bits (80), Expect = 0.005
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 181 AQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMGIGSGGTVSGVGQ 240
A ELLE+ P +L A R F P V++ G G G VS
Sbjct: 2 ATELLEANPQYVVLNPLEAKAKWRDLFGNDNPIH-------VEV---GSGKGAFVS---- 47
Query: 241 YLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDM 286
+ QNP++ G++ +S + + N D D+
Sbjct: 48 GMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL 93
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 30.6 bits (68), Expect = 0.20
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 124 SGNMGISMAFMAAMKGYKMVL--TMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKA 181
SG G + A GY ++ S R + + + L + PA +++
Sbjct: 45 SGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAE 104
Query: 182 QELLESTPNAFMLQQFSNPAN--TRVHFETT 210
+ L A Q + A V F T
Sbjct: 105 ENALPGFAEALRSYQEAAAAGTFLVVEFTTL 135
>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein
CoaBC, phosphopantothenoylcysteine synthase domain
(CoaB) {Escherichia coli [TaxId: 562]}
Length = 223
Score = 26.3 bits (57), Expect = 4.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 103 LEDAENKN-LISPGKTT--------IIEPTSGNMGISMAFMAAMKGYKMVL 144
+ D ++ N +I+ G T I + +SG MG ++A AA +G + L
Sbjct: 1 VNDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTL 51
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 26.3 bits (58), Expect = 4.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMR 159
SG +A M A++ ++L Y L R + M+
Sbjct: 238 SGLCMPEIAAMGAIERLDVMLNDALYGILFRDINMQ 273
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 26.0 bits (56), Expect = 5.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 124 SGNMGISMAFMAAMKGYKMVL 144
+G MG +A+ +A KG +++
Sbjct: 12 AGIMGGGIAYQSASKGTPILM 32
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 25.2 bits (55), Expect = 6.7
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 240 QYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNG-----VGFKPDILDMDVMEKVLE 294
+ + S NP+ Y + ES + N G P + F +V +K+LE
Sbjct: 49 KKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLE 108
Query: 295 V 295
+
Sbjct: 109 L 109
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 25.1 bits (54), Expect = 8.7
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 28/162 (17%)
Query: 36 SSFAQRLRDLPKDLPATNIK----RDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPT 91
+S+AQ L+ P + D + R P +F K+ + ++ +
Sbjct: 4 ASYAQELKLALHQYPNFPSEGILFEDFLPIF-RNPGLF-QKLIDAFKLHLEEAFPEVKID 61
Query: 92 ASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFM------AAMKGYKMVLT 145
+ LE + +G+ +
Sbjct: 62 Y-------IVGLE---------SRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEK 105
Query: 146 MPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLES 187
E + G+++I+ D GG+ A EL+E
Sbjct: 106 EYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQ 147
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.4 bits (54), Expect = 8.7
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 124 SGNMGISMAFMAAMKGYKMVLTMPSY 149
+G MG +++ G ++ + +
Sbjct: 8 AGAMGSALSVPLVDNGNEVRIWGTEF 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,088,229
Number of extensions: 49236
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 35
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)