Query 021777
Match_columns 307
No_of_seqs 127 out of 221
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 4E-113 1E-117 822.7 16.8 298 3-303 1-300 (335)
2 KOG1566 Conserved protein Mo25 100.0 5E-108 1E-112 773.3 24.5 292 3-294 1-294 (342)
3 PF10508 Proteasom_PSMB: Prote 85.2 25 0.00054 36.2 14.3 158 127-290 201-370 (503)
4 KOG1566 Conserved protein Mo25 85.0 1.3 2.7E-05 43.7 4.5 144 126-282 37-191 (342)
5 cd00020 ARM Armadillo/beta-cat 84.5 1.5 3.3E-05 33.9 4.0 107 168-280 8-114 (120)
6 PF10508 Proteasom_PSMB: Prote 84.2 6.3 0.00014 40.5 9.4 189 86-289 43-234 (503)
7 cd00020 ARM Armadillo/beta-cat 82.1 8.6 0.00019 29.6 7.5 97 140-239 21-118 (120)
8 PLN03200 cellulose synthase-in 76.0 36 0.00077 41.3 12.9 190 73-280 438-632 (2102)
9 PF08767 CRM1_C: CRM1 C termin 74.6 46 0.001 32.2 11.5 172 82-255 72-272 (319)
10 PF11262 Tho2: Transcription f 73.0 92 0.002 30.0 14.9 174 40-241 73-256 (298)
11 PLN03200 cellulose synthase-in 72.3 41 0.00089 40.8 12.2 198 77-290 526-727 (2102)
12 KOG1525 Sister chromatid cohes 70.7 93 0.002 36.2 14.2 254 11-287 16-330 (1266)
13 KOG0946 ER-Golgi vesicle-tethe 69.0 24 0.00053 38.9 8.7 164 67-278 21-187 (970)
14 KOG0946 ER-Golgi vesicle-tethe 68.8 37 0.0008 37.6 10.0 121 67-200 107-245 (970)
15 PF08064 UME: UME (NUC010) dom 67.6 2.4 5.3E-05 34.7 0.9 77 203-287 2-84 (107)
16 PF15087 DUF4551: Protein of u 66.7 30 0.00064 37.0 8.7 208 16-240 373-613 (617)
17 PF12717 Cnd1: non-SMC mitotic 64.2 9.7 0.00021 33.4 4.1 84 183-282 4-88 (178)
18 PF01602 Adaptin_N: Adaptin N 63.6 50 0.0011 32.9 9.4 227 38-281 1-255 (526)
19 PF03224 V-ATPase_H_N: V-ATPas 62.4 19 0.0004 34.4 5.9 95 169-267 107-201 (312)
20 KOG1992 Nuclear export recepto 59.0 99 0.0021 34.5 11.0 23 203-225 225-247 (960)
21 PF08569 Mo25: Mo25-like; Int 57.9 1.6E+02 0.0035 29.0 11.7 139 73-214 156-303 (335)
22 PF05952 ComX: Bacillus compet 54.3 8.9 0.00019 28.7 1.8 19 119-137 5-23 (57)
23 PF12717 Cnd1: non-SMC mitotic 53.6 51 0.0011 28.8 6.8 82 168-253 64-152 (178)
24 KOG1058 Vesicle coat complex C 52.1 2.3E+02 0.005 31.6 12.3 200 51-281 39-267 (948)
25 PF12783 Sec7_N: Guanine nucle 51.6 1.1E+02 0.0023 26.4 8.4 134 97-244 4-149 (168)
26 KOG1655 Protein involved in va 51.3 63 0.0014 30.1 7.1 130 3-141 3-157 (218)
27 PF12348 CLASP_N: CLASP N term 50.8 45 0.00098 29.6 6.1 182 91-284 17-204 (228)
28 PF13646 HEAT_2: HEAT repeats; 48.8 18 0.00039 26.9 2.7 52 212-277 31-83 (88)
29 PF10835 DUF2573: Protein of u 47.5 1.1E+02 0.0023 24.6 6.9 65 40-108 2-69 (82)
30 PF00514 Arm: Armadillo/beta-c 47.1 59 0.0013 21.3 4.8 37 73-109 4-40 (41)
31 KOG0166 Karyopherin (importin) 46.4 2.3E+02 0.005 29.9 11.1 145 72-225 312-470 (514)
32 PF06757 Ins_allergen_rp: Inse 46.1 50 0.0011 29.2 5.5 65 158-227 23-90 (179)
33 PF07304 SRA1: Steroid recepto 41.8 52 0.0011 28.9 4.9 43 40-82 64-106 (157)
34 PF13646 HEAT_2: HEAT repeats; 40.4 12 0.00026 27.9 0.6 48 220-281 8-55 (88)
35 KOG0166 Karyopherin (importin) 37.9 2.2E+02 0.0047 30.1 9.4 144 48-196 321-486 (514)
36 PF13513 HEAT_EZ: HEAT-like re 36.8 28 0.00061 24.1 2.0 47 228-278 3-49 (55)
37 COG5657 CSE1 CAS/CSE protein i 35.9 1.3E+02 0.0028 33.8 7.6 64 159-225 175-241 (947)
38 PF14680 FANCI_HD2: FANCI heli 35.1 47 0.001 31.1 3.8 47 146-215 35-84 (234)
39 PF01365 RYDR_ITPR: RIH domain 34.2 92 0.002 27.8 5.4 53 183-241 115-169 (207)
40 PF06371 Drf_GBD: Diaphanous G 33.4 2.4E+02 0.0051 24.1 7.7 59 178-239 127-185 (187)
41 PTZ00446 vacuolar sorting prot 29.0 1.4E+02 0.0031 27.3 5.7 17 13-29 24-40 (191)
42 PF04690 YABBY: YABBY protein; 28.8 56 0.0012 29.5 3.0 49 9-59 121-169 (170)
43 PF01417 ENTH: ENTH domain; I 28.4 1.5E+02 0.0033 24.3 5.4 91 60-154 14-112 (125)
44 PTZ00464 SNF-7-like protein; P 27.6 1.8E+02 0.0038 27.0 6.1 48 1-55 1-50 (211)
45 KOG0928 Pattern-formation prot 27.0 4.2E+02 0.0091 31.3 9.9 141 93-255 382-585 (1386)
46 KOG1991 Nuclear transport rece 26.8 1E+03 0.022 27.4 13.2 200 53-268 6-233 (1010)
47 PF04499 SAPS: SIT4 phosphatas 25.6 2.2E+02 0.0049 29.4 7.1 82 73-155 54-148 (475)
48 PF09090 MIF4G_like_2: MIF4G l 24.5 5.8E+02 0.012 23.7 10.2 73 11-112 6-79 (253)
49 cd00256 VATPase_H VATPase_H, r 24.1 5.8E+02 0.013 26.2 9.6 64 213-280 144-210 (429)
50 smart00802 UME Domain in UVSB 23.4 61 0.0013 26.8 2.1 77 203-287 2-84 (107)
51 KOG2023 Nuclear transport rece 22.8 5.1E+02 0.011 28.8 9.1 152 121-288 121-287 (885)
52 PF08006 DUF1700: Protein of u 22.7 2.1E+02 0.0045 25.1 5.5 60 13-80 2-63 (181)
53 cd03572 ENTH_epsin_related ENT 22.1 4.9E+02 0.011 22.1 7.9 88 64-154 15-110 (122)
54 KOG1533 Predicted GTPase [Gene 22.1 1E+02 0.0022 29.8 3.6 46 181-228 49-101 (290)
55 COG5098 Chromosome condensatio 21.8 4E+02 0.0086 29.8 8.1 100 145-250 322-423 (1128)
56 PF04388 Hamartin: Hamartin pr 20.2 1.8E+02 0.004 31.3 5.4 72 167-240 4-96 (668)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=4.4e-113 Score=822.74 Aligned_cols=298 Identities=49% Similarity=0.763 Sum_probs=263.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 021777 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 3 ~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
|.|||+|+||||+|+||+++|+|.+|+ ++ .+++++|++|||+|+|++||+||+|++|++|++|+|+||++|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~~--~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD-SK--SDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc-cc--cCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 344445569999999999999999997 22 468889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhHHHHHHHhhccccCCcc-chhHHhhhc-HhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 83 LILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 83 l~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~-p~v~Yl~~~-peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
+..||.+|+.||||+|||+++||++++|+++|+++ |+|+|+++| |||+++|++||++||+|++||+|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999998 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||++|++||+|+||||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCCccceeeccc
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSFSLPVYISTK 303 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~~~~~~~~~~ 303 (307)
+||+|++||+|||+||+|||+||+||+|+|||||+|||||||||||||++++++..-+..|+.
T Consensus 238 ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~ 300 (335)
T PF08569_consen 238 LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNRE 300 (335)
T ss_dssp HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHH
T ss_pred HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776666654
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=4.7e-108 Score=773.30 Aligned_cols=292 Identities=49% Similarity=0.749 Sum_probs=283.1
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 021777 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 3 ~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
|.|||+|+||||+|+||.+||+|..++..+...+++++|++|||+|++..+|+|+||++|.||.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 45555556999999999999999999988756789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccC-cchhhhhhHHHHHHhhhhHHHH
Q 021777 83 LILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN-KEVALHCGIMLRECIKFPSLAR 161 (307)
Q Consensus 83 l~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~-~dial~~G~mLRecik~e~la~ 161 (307)
+.+||+++|+++||+|||+++||++++|+++|+|+|+|+|+++|||+++.|++||++ +|+|++||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHH-HHhhhcCCCceeecchhhhhHHhh
Q 021777 162 YILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDL-YEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 162 ~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~-yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++|+|++||+||.||+.|+||||||||+|||+++|+||.+|||||.+|||+||.+ |++|++|+||||||||+|||||+|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 668999999999999999999999
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCC
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSF 294 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~ 294 (307)
+||+|+.+|++||++|+|||+||+||||+|||||+|||||||||||||+++-++
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V 294 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV 294 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999998764
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.22 E-value=25 Score=36.16 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=109.2
Q ss_pred HhHHHHHHhcccCcc--hhhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHH------HHHHHhhcC
Q 021777 127 FELLDFLVVCYDNKE--VALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFS------TFKDLLTKH 198 (307)
Q Consensus 127 peil~~Ll~gY~~~d--ial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~------Tfkellt~H 198 (307)
-.+++.++..+++.| +-++|-.+|-+....+.-+++|.....+.++.+.+....-|-...++- -|-.+.+.+
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 347777777788877 577899999999999999999999999988888877665554222232 222222222
Q ss_pred hHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCC----CcCce
Q 021777 199 LTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS----SKNIQ 274 (307)
Q Consensus 199 k~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~----sknIq 274 (307)
+.- +..-|..|......++++++-.-+=-++--||-+=..-.-..++ -...++.++.+|....+. +--++
T Consensus 281 ~~~----v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L--~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 281 PQE----VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL--LQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred hHH----HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH--HhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 222 23567888888889999999888878888898775443333333 345566666666655554 34478
Q ss_pred eehheeeeeeeecCCC
Q 021777 275 ISAFHIFKVMIFHFLH 290 (307)
Q Consensus 275 ~EAFhVFKvFVANP~~ 290 (307)
.-+.|.|..+..+|..
T Consensus 355 ~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 355 LRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888888888776654
No 4
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=85.05 E-value=1.3 Score=43.68 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=108.0
Q ss_pred cHhHHHHHHhcccCcchhhhhhHHHHHHhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcCh---HH
Q 021777 126 HFELLDFLVVCYDNKEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHL---TV 201 (307)
Q Consensus 126 ~peil~~Ll~gY~~~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk---~l 201 (307)
+-++++.+-+||..+...+...+..+.-... -+|+.-+-.++.+....++...-.||---|+...|.-++.++. ..
T Consensus 37 ~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~ 116 (342)
T KOG1566|consen 37 REKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSP 116 (342)
T ss_pred HHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcch
Confidence 4677777777777777777666666665542 2344445556778888899999999999999999999998776 57
Q ss_pred HHHHHHhhHHHHH---HHHH----hhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCce
Q 021777 202 VSEYLTAHYDEFF---DLYE----KLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQ 274 (307)
Q Consensus 202 vaefl~~Nyd~Ff---~~yn----~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq 274 (307)
+++||..|-+-.+ ..|. ..|+.||..-.--+-+.|++++|.-.|+.-.-.||..|.. ++ .
T Consensus 117 tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-di------------a 183 (342)
T KOG1566|consen 117 TVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-DI------------A 183 (342)
T ss_pred HHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-HH------------H
Confidence 7799988876543 3343 3788888887777778899999999999999999988866 44 4
Q ss_pred eehheeee
Q 021777 275 ISAFHIFK 282 (307)
Q Consensus 275 ~EAFhVFK 282 (307)
.+||..||
T Consensus 184 sdA~~tfK 191 (342)
T KOG1566|consen 184 SDAFSTFK 191 (342)
T ss_pred HHHHHHHH
Confidence 56666666
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=84.54 E-value=1.5 Score=33.93 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=77.6
Q ss_pred hHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHH
Q 021777 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSH 247 (307)
Q Consensus 168 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~ 247 (307)
.+..+.+.+..++-++-..|..++..+-..-+....+++.. .++...-++|.++|+-.++.++..|+.|..+-. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA---GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--D 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--H
Confidence 44455566666777888899999888766557777777664 466677788999999999999999999986542 2
Q ss_pred HHHHHhcChhhHHHHHHHhcCCCcCceeehhee
Q 021777 248 IMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (307)
Q Consensus 248 vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhV 280 (307)
.. ..+-+..-++.+..+|.+.+..++-.|..+
T Consensus 83 ~~-~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~ 114 (120)
T cd00020 83 NK-LIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114 (120)
T ss_pred HH-HHHHHCCChHHHHHHHhcCCHHHHHHHHHH
Confidence 22 333344578899999998877766555444
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.16 E-value=6.3 Score=40.46 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhh--hhhHHHHHHhhhhHH-HHH
Q 021777 86 LVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVAL--HCGIMLRECIKFPSL-ARY 162 (307)
Q Consensus 86 Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial--~~G~mLRecik~e~l-a~~ 162 (307)
+..+|..=+-|.-..++.|...++.. ..| +.+ -|++...|..|..+|+-.. .+=..|+-|+++..- +..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~----~~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA----LSP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc----cCH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34444433444444444455544442 222 122 5777788888877765332 222336777776655 555
Q ss_pred HhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcC
Q 021777 163 ILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLE 242 (307)
Q Consensus 163 iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLld 242 (307)
+.+.+.+-.+...+..++-+|+..|...++.+.. |+.-.+..+..|. ..+..+++..+|=+.|.+.+-++.++--
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~- 189 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIAS- 189 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHh-
Confidence 5566667777788999999999999999999986 5555555656664 6778889988777889999999999853
Q ss_pred CCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCC
Q 021777 243 PPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFL 289 (307)
Q Consensus 243 r~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~ 289 (307)
..... ..|+.+..-+..+...|.++---+|.-|.-++.-.+..|+
T Consensus 190 -~S~~~-~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 190 -HSPEA-AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred -cCHHH-HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 33333 4566666688888888888666667766666655555444
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.11 E-value=8.6 Score=29.59 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=70.8
Q ss_pred cchhhhhhHHHHHHhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHH
Q 021777 140 KEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYE 218 (307)
Q Consensus 140 ~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn 218 (307)
++.-..+-..|.....+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 44445555556665555 77788888888888888898989999999999999999765544333333332 566677
Q ss_pred hhhcCCCceeecchhhhhHHh
Q 021777 219 KLLTSSNYVTRRQSLKLLSEF 239 (307)
Q Consensus 219 ~Ll~s~NYVTkRQSLKLLgel 239 (307)
+++.+++.=++++++-+|+.|
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 788888888888988888765
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=75.99 E-value=36 Score=41.32 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=128.8
Q ss_pred HHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhh---cHhHHHHHHhcccCcchhhhhhHH
Q 021777 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN---HFELLDFLVVCYDNKEVALHCGIM 149 (307)
Q Consensus 73 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~m 149 (307)
..+.+.+.+.+..|+..|..=+-+.++.++..++++-.....++- -+.+ =|-++..|-.| ++++--.+-..
T Consensus 438 ~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~----aIieaGaIP~LV~LL~s~--~~~iqeeAawA 511 (2102)
T PLN03200 438 LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW----AITAAGGIPPLVQLLETG--SQKAKEDSATV 511 (2102)
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH----HHHHCCCHHHHHHHHcCC--CHHHHHHHHHH
Confidence 345666777899999999887888899998888877643322221 1111 14444444322 23332222223
Q ss_pred HHHHhhhh-HHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhc-ChHHHHHHHHhhHHHHHHHHHhhhcCCCce
Q 021777 150 LRECIKFP-SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTK-HLTVVSEYLTAHYDEFFDLYEKLLTSSNYV 227 (307)
Q Consensus 150 LRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~-Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYV 227 (307)
|-.+..++ ...+.+.....+-.+++.++.+++++-..|..++..+... +...+ ..+-.|+.+++--
T Consensus 512 L~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 512 LWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQLTALLLGDLPE 579 (2102)
T ss_pred HHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHHHHHhcCCChh
Confidence 33222244 4444455667888888888999999888888888777542 22211 3455678888888
Q ss_pred eecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhee
Q 021777 228 TRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (307)
Q Consensus 228 TkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhV 280 (307)
++-.+++.||-++.--....+.+.-+.+..=+..+..||++.++.+|=+|..+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASV 632 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHH
Confidence 88889999999987666766666667677899999999999999999999854
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.62 E-value=46 Score=32.23 Aligned_cols=172 Identities=14% Similarity=0.169 Sum_probs=100.2
Q ss_pred HHHHHHhcCCCCCchhhh-hHHHHHHHhhccccCCccchhHHhhhc--HhHHHHHHhccc-CcchhhhhhHHHHHHhhh-
Q 021777 82 VLILLVHKLPILGWEARK-DLVHCWSILLKQKVDSTYCCVQFIENH--FELLDFLVVCYD-NKEVALHCGIMLRECIKF- 156 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RK-dv~~If~~llR~~~~~~~p~v~Yl~~~--peil~~Ll~gY~-~~dial~~G~mLRecik~- 156 (307)
++..++.--..-..++|- .|-.+++.++++-.+.-.|.+.-+.++ --++.++-++++ .||....+=.+||-++++
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 333344444444556665 566777777765322112222222221 122233333444 699999999999998887
Q ss_pred -hHHHHHHhcchhHHHhhhh----ccCCCchhhhchHHHHHHHhhcCh----HHHHHHHHhhHHHHHHHHHhhh-cCCCc
Q 021777 157 -PSLARYILESASFELFFKF----VELPTFDVASDAFSTFKDLLTKHL----TVVSEYLTAHYDEFFDLYEKLL-TSSNY 226 (307)
Q Consensus 157 -e~la~~iL~~~~f~~fF~y----v~~~~FdiasDAf~Tfkellt~Hk----~lvaefl~~Nyd~Ff~~yn~Ll-~s~NY 226 (307)
+.+.. |..+.|..+++. ++.++-||+..++.++.+++++-. ..+.+|..+.|-.+.++.-..+ .+..=
T Consensus 152 f~~l~~--lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 152 FPALLQ--LPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp THHHHH--S-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 44433 566777777764 567999999999999999998543 4555888888877777766533 33322
Q ss_pred eeecchhhhhHHhhc--------------CCCCHHHHHHHhcC
Q 021777 227 VTRRQSLKLLSEFLL--------------EPPNSHIMKRYILE 255 (307)
Q Consensus 227 VTkRQSLKLLgelLl--------------dr~N~~vM~rYis~ 255 (307)
..=++.-.+|..++. .-+|..++..|+++
T Consensus 230 ~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~ 272 (319)
T PF08767_consen 230 SGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIAN 272 (319)
T ss_dssp GGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHH
Confidence 222222356666651 23667777777654
No 10
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=72.97 E-value=92 Score=30.00 Aligned_cols=174 Identities=17% Similarity=0.264 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccch
Q 021777 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCC 119 (307)
Q Consensus 40 ~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~ 119 (307)
.+..+.+.+.|++-|+-... ...++.+.. +..+.+.=+++-.+.. +++|= .+.=|-..+...--..+.+
T Consensus 73 ~~~~~~v~~~L~~~k~~wf~----~~~~~~i~~-~~~flq~Ci~PR~~~S----~~DA~--ycakFi~~lh~~~tp~F~~ 141 (298)
T PF11262_consen 73 QEHVEKVKKRLQEEKDSWFS----SKDPEKIEA-ITAFLQHCILPRALFS----PFDAL--YCAKFIKLLHELGTPNFST 141 (298)
T ss_pred HHHHHHHHHHHHHhhhhhhc----cCChhhHHH-HHHHHHHHHHHHhhCC----HHHHH--HHHHHHHHHHhcCCCCCCH
Confidence 34445566666666666652 233444432 4444444444444433 11111 1111111222222233556
Q ss_pred hHHhhh--cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhch-------HHH
Q 021777 120 VQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDA-------FST 190 (307)
Q Consensus 120 v~Yl~~--~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDA-------f~T 190 (307)
+.++-. +..++..++......| |-+.|.-|.+.++ .+.+.--..+.|.+-- -..|.|-..-++ ++.
T Consensus 142 l~~~d~lf~~~~l~~~ifscTe~E-A~nlG~Fl~~iL~--~l~~W~~d~~~f~~e~--~~~pGF~~~~~~~~~~~l~~~~ 216 (298)
T PF11262_consen 142 LSLYDRLFNSKMLSPLIFSCTENE-AENLGRFLNEILE--DLNRWHRDEEVFEKEC--ANLPGFATTFKSKPSDFLSYED 216 (298)
T ss_pred HHHHHHHHhhhhhhhHHhccCHHH-HHHHHHHHHHHHH--HHHHHHhChHHHHHHc--cCCCchhhhccccccccCCHHH
Confidence 666554 3556667776665555 6666666665553 2333222222221111 345666554443 344
Q ss_pred HHHHhh-cChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhc
Q 021777 191 FKDLLT-KHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (307)
Q Consensus 191 fkellt-~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl 241 (307)
|+.++- =|+. ....+...|.++||+..|-++=.|..++-
T Consensus 217 f~~~~~kWh~~------------i~~~l~~~L~s~eym~iRNai~vL~~i~~ 256 (298)
T PF11262_consen 217 FRKVLYKWHKR------------ITKALISCLESKEYMHIRNAIIVLKKISP 256 (298)
T ss_pred HHHHHHHHHHH------------HHHHHHHHhcchhHHHHHHHHHHHHHHHh
Confidence 443322 1222 33444557899999999999999988874
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=72.35 E-value=41 Score=40.84 Aligned_cols=198 Identities=15% Similarity=0.091 Sum_probs=133.9
Q ss_pred HHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhh----hhhHHHHH
Q 021777 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVAL----HCGIMLRE 152 (307)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial----~~G~mLRe 152 (307)
+.+.+.+..|+.-|..=+++.++.+.....++++....... +.++..| .+ +++.+-. ..|.|+-.
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I---------~~Lv~LL-ls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI---------SQLTALL-LG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH---------HHHHHHh-cC-CChhHHHHHHHHHHHHHhh
Confidence 33568888888888888999999999888888764322111 2222221 11 1122111 33444443
Q ss_pred HhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecch
Q 021777 153 CIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQS 232 (307)
Q Consensus 153 cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQS 232 (307)
+-.++...........+..+.+..+.++=++--+|..++-.+.+.+++.....+..+ -+.-.-.||.+++.-+++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag---aIpPLV~LLss~~~~v~keA 671 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE---IINPCIKLLTNNTEAVATQS 671 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---CHHHHHHHHhcCChHHHHHH
Confidence 444444444444456777778888888888999999999999998888877766654 24455679999999999999
Q ss_pred hhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCC
Q 021777 233 LKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLH 290 (307)
Q Consensus 233 LKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~ 290 (307)
-.-|+.+... ..+--..++-+..=++..+.+|++++-.+.-+|-...--++..|..
T Consensus 672 A~AL~nL~~~--~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 672 ARALAALSRS--IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence 9999999953 2222222334567799999999999888887777766666666644
No 12
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.70 E-value=93 Score=36.17 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=148.9
Q ss_pred CCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHH-HhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhc
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFV-TMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHK 89 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~-~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 89 (307)
|-|-.|+++.|++...-|.+-+. +. -..+.+.+... -+++.+....|++ -+|.-..|=.|+|+. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~q---d~--~~~~~~~pl~~~l~~~~~L~h~d~d------vrllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQ---DN--LDLASLLPLADHLIKDFLLKHKDKD------VRLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhccc---Cc--hhHHHHHHHHHHHhhHHHhcCCCcC------hhHHHHHHHHHHHHH---h
Confidence 45567888888877665544321 01 11223333332 3455555554433 234455555666554 4
Q ss_pred CCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhc--------cc-------------------Ccch
Q 021777 90 LPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--------YD-------------------NKEV 142 (307)
Q Consensus 90 l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~g--------Y~-------------------~~di 142 (307)
-|.+||+.- +...||.-++++.-|=.=+..-|.-+++.++.+|... ++ .|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 578888877 8889999888876543222344666667777666441 11 2223
Q ss_pred hhhhhHHHHHHhhh-----hHHHHHHhcc----------------------------hhHHHhhhhccCCCchhhhchHH
Q 021777 143 ALHCGIMLRECIKF-----PSLARYILES----------------------------ASFELFFKFVELPTFDVASDAFS 189 (307)
Q Consensus 143 al~~G~mLRecik~-----e~la~~iL~~----------------------------~~f~~fF~yv~~~~FdiasDAf~ 189 (307)
..+.+.|++..|.- ..+..++|++ +...+|+.-.-...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 33344555544421 2222333322 12333443221222224455555
Q ss_pred HHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCC
Q 021777 190 TFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS 269 (307)
Q Consensus 190 Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~ 269 (307)
-+.+++-.+..++.+-|.. ...++..=|.|+|=-+|-++++|+|.++.+....-. =..++-.+....-+.|.
T Consensus 241 ~~he~i~~L~~~~p~ll~~----vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D~ 312 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLA----VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFNDI 312 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhccC
Confidence 6666666666666665554 233334446778888999999999999998875433 23577788888999999
Q ss_pred CcCceeehheeeeeeeec
Q 021777 270 SKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 270 sknIq~EAFhVFKvFVAN 287 (307)
+-.+++|.--.=|.+.+|
T Consensus 313 ~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLLN 330 (1266)
T ss_pred ChhhhhhHHHHhHHHHhc
Confidence 999999999888877776
No 13
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=24 Score=38.90 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhcc---ccCCccchhHHhhhcHhHHHHHHhcccCcchh
Q 021777 67 ADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQ---KVDSTYCCVQFIENHFELLDFLVVCYDNKEVA 143 (307)
Q Consensus 67 ~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~---~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dia 143 (307)
.|.+..|...+..+-+ +|-|||++.=..++-|. .+|... =+-+++.|-+-|.++|+.
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~G--------mk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQG--------MKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHhhccCCHHHH
Confidence 4566777777776655 46899998877766653 232211 267888888889999866
Q ss_pred hhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcC
Q 021777 144 LHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTS 223 (307)
Q Consensus 144 l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s 223 (307)
-.+=..+--.++|+. +-..+..+. .+.|-=.-|-|.|+..+..+.= .-..++.
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~l------------ll~~~e~ 133 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITL------------LLQSLEE 133 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHH------------HHHHHHh
Confidence 554444433333332 112334454 4555555677777766544432 2223344
Q ss_pred CCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehh
Q 021777 224 SNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAF 278 (307)
Q Consensus 224 ~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAF 278 (307)
-++-.||-+++||..+|-.|. -++-..-+.+|--.--||-+|+|..-.|+=||-
T Consensus 134 ~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 134 FDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred hchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 457789999999999999998 677778889999999999999999999887774
No 14
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.82 E-value=37 Score=37.59 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhh-cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhh
Q 021777 67 ADQVLQLATEVCKE-DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALH 145 (307)
Q Consensus 67 ~e~~~qLa~ei~~~-dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~ 145 (307)
.+.-.++|..++.. |.+..|+..+...||-.|.-..++++++++.++.. .=+-+..+|-=+..|+.--.+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e---~q~~ll~~P~gIS~lmdlL~Ds----- 178 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE---LQDALLVSPMGISKLMDLLRDS----- 178 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH---HHHHHHHCchhHHHHHHHHhhh-----
Confidence 34456788877655 99999999999999999999999999999876532 2245566776666665433221
Q ss_pred hhHHHHHHhhhhHH-------------HHHHhcchhHHHhhhhccCC----CchhhhchHHHHHHHhhcChH
Q 021777 146 CGIMLRECIKFPSL-------------ARYILESASFELFFKFVELP----TFDVASDAFSTFKDLLTKHLT 200 (307)
Q Consensus 146 ~G~mLRecik~e~l-------------a~~iL~~~~f~~fF~yv~~~----~FdiasDAf~Tfkellt~Hk~ 200 (307)
||-||.|.+ -+.+-....|..+|+-++.. .==|.-|++.-+.-||..|-+
T Consensus 179 -----rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 179 -----REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred -----hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 334444433 23333445677777776632 223667777777777776643
No 15
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=67.65 E-value=2.4 Score=34.70 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHhhHHHHHHHHHh-hhc---CCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcC--CCcCceee
Q 021777 203 SEYLTAHYDEFFDLYEK-LLT---SSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKD--SSKNIQIS 276 (307)
Q Consensus 203 aefl~~Nyd~Ff~~yn~-Ll~---s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d--~sknIq~E 276 (307)
++||..|+=..+..++. |.. +..|..|+++++=+|+++- .+..||+.- +=-||..|+. ..+.+|.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~--~pQI~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA--RPQIMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH--HHHHHHHHHHHhCChhhHHH
Confidence 68999998777777775 333 6999999999999999985 334444332 2224444443 34578999
Q ss_pred hheeeeeeeec
Q 021777 277 AFHIFKVMIFH 287 (307)
Q Consensus 277 AFhVFKvFVAN 287 (307)
|+.++.+||-+
T Consensus 74 al~~W~~fi~~ 84 (107)
T PF08064_consen 74 ALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 16
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=66.70 E-value=30 Score=36.99 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhcCCCCC-
Q 021777 16 EVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILG- 94 (307)
Q Consensus 16 elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~- 94 (307)
=+|.++.|.|..=....+...+..+--.=|++=.+.|+=..++-.+|.+|+-=.+-.--....-.|+|..|| +-|.++
T Consensus 373 Flv~~L~eyLp~s~~~~~~q~~~qrADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~Li-~~P~~p~ 451 (617)
T PF15087_consen 373 FLVQTLHEYLPESRSKNGLQNKSQRADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVILI-CEPQIPK 451 (617)
T ss_pred HHHHHHHHhcccCcCccccccccchHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHHh-cCccccc
Confidence 358888887765433222111111111224556667888888888888865433322222333334444333 334443
Q ss_pred ----chhhhhHHHHHHHhhccccCCccc--hhHHhhhcHhHHHHHHh-c-----ccCcchhhhhhHHHHHHhhhhHHHHH
Q 021777 95 ----WEARKDLVHCWSILLKQKVDSTYC--CVQFIENHFELLDFLVV-C-----YDNKEVALHCGIMLRECIKFPSLARY 162 (307)
Q Consensus 95 ----fE~RKdv~~If~~llR~~~~~~~p--~v~Yl~~~peil~~Ll~-g-----Y~~~dial~~G~mLRecik~e~la~~ 162 (307)
|+. +-+++ -.-..+.... ..+|.-+-..+|.-++- | ....+-.++.|-|+|..=-|.
T Consensus 452 ~~~~~~~-~~~~~-----~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~p----- 520 (617)
T PF15087_consen 452 SCPPFDI-QLVAD-----SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSHP----- 520 (617)
T ss_pred cCCcccc-ccccc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcCC-----
Confidence 111 11110 0011111111 24676666555554433 1 234566778888888544443
Q ss_pred HhcchhHHHhhhhccCCC----------chhhhchHHHH---HHHhh--cChHHHHHHHHhhHHHHHHHHHhh--hcC--
Q 021777 163 ILESASFELFFKFVELPT----------FDVASDAFSTF---KDLLT--KHLTVVSEYLTAHYDEFFDLYEKL--LTS-- 223 (307)
Q Consensus 163 iL~~~~f~~fF~yv~~~~----------FdiasDAf~Tf---kellt--~Hk~lvaefl~~Nyd~Ff~~yn~L--l~s-- 223 (307)
.+-.|..|+-... +=-.+||---| .-|.+ .|.+-.|+|+.+||.+=|.-|-+. ++.
T Consensus 521 -----~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI~~p~lekKL 595 (617)
T PF15087_consen 521 -----PLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFIKMPCLEKKL 595 (617)
T ss_pred -----cHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeeecchhhHhhC
Confidence 3444444433222 22234443333 33333 688899999999998866555442 333
Q ss_pred -CCceeecchhhhhHHhh
Q 021777 224 -SNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 224 -~NYVTkRQSLKLLgelL 240 (307)
.-|=..+..++|++|+|
T Consensus 596 P~~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 596 PPCYPITQPTLQLIHEVL 613 (617)
T ss_pred CCCCCCchHHHHHHHHHH
Confidence 56888889999999987
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=64.17 E-value=9.7 Score=33.38 Aligned_cols=84 Identities=27% Similarity=0.345 Sum_probs=63.5
Q ss_pred hhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhH-HH
Q 021777 183 VASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFL-KV 261 (307)
Q Consensus 183 iasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NL-Kl 261 (307)
|-+-|..++-|+..||+.+|-.|+. ..-+.|.+++=..|++++..|..|++. -|+--...+ -.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~--------~l~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~~ 67 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLP--------NLYKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFSR 67 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHH--------HHHHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhHH
Confidence 4466788888999999888866543 444678888888999999999999873 455555555 67
Q ss_pred HHHHhcCCCcCceeehheeee
Q 021777 262 MMTLLKDSSKNIQISAFHIFK 282 (307)
Q Consensus 262 ~M~LL~d~sknIq~EAFhVFK 282 (307)
++.+|.|++..|+--|=..|.
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHH
Confidence 778889988888766655554
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=63.58 E-value=50 Score=32.91 Aligned_cols=227 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh----cHHHHHHhcCCCCCchhhhhHHHHHHHhhcccc
Q 021777 38 ALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE----DVLILLVHKLPILGWEARKDLVHCWSILLKQKV 113 (307)
Q Consensus 38 ~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~----dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~ 113 (307)
.++....|+.|.+...+ .+.+-..+.+.+|....... -.+...+..+..=+++.||-+...+..+.....
T Consensus 1 ~~~~~~~el~~~~~~~~------~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~ 74 (526)
T PF01602_consen 1 ERKRISQELAKILNSFK------IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP 74 (526)
T ss_dssp HHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH
T ss_pred CcchHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch
Q ss_pred CCccchhHHhhh-----cHhHHHHHHh---cccCcchhhhhhHHHHHHhhh----------hHHHHHHhcch-----h-H
Q 021777 114 DSTYCCVQFIEN-----HFELLDFLVV---CYDNKEVALHCGIMLRECIKF----------PSLARYILESA-----S-F 169 (307)
Q Consensus 114 ~~~~p~v~Yl~~-----~peil~~Ll~---gY~~~dial~~G~mLRecik~----------e~la~~iL~~~-----~-f 169 (307)
+.-.-++.-+.. +|.+-..-++ .-..++++-.....+..++.| -.++++.-.+| . +
T Consensus 75 ~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~ 154 (526)
T PF01602_consen 75 ELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELI 154 (526)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHH
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHH
Q ss_pred HHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHH
Q 021777 170 ELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIM 249 (307)
Q Consensus 170 ~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM 249 (307)
..+.+.+..++-.|.+.|...+.++ ++..-... .=...++....+++...+--.+...+++|+.+. +.+..-.
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~---~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~--~~~~~~~ 227 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYK---SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA--PMEPEDA 227 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHT---THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST--SSSHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH--ccCcchhh---hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc--cCChhhh
Q ss_pred HHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 250 KRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 250 ~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
.. ...+..+..+|++.+..|.+||...+
T Consensus 228 ~~----~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 228 DK----NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHhhccccHHHHHHHHHH
No 19
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.40 E-value=19 Score=34.37 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHH
Q 021777 169 FELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHI 248 (307)
Q Consensus 169 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~v 248 (307)
+..|+...+.++=-|.-=|...+-.+++..+.--...-..-...|++.....+++++-=...-++..|++++-.+ ..
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~---~~ 183 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK---EY 183 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH---HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc---hh
Confidence 445555555554444444555555555543322221112223566666666666633222266789999999544 44
Q ss_pred HHHHhcChhhHHHHHHHhc
Q 021777 249 MKRYILEVRFLKVMMTLLK 267 (307)
Q Consensus 249 M~rYis~~~NLKl~M~LL~ 267 (307)
...|+. .+.+..++.+|+
T Consensus 184 R~~f~~-~~~v~~l~~iL~ 201 (312)
T PF03224_consen 184 RQVFWK-SNGVSPLFDILR 201 (312)
T ss_dssp HHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHh-cCcHHHHHHHHH
Confidence 445555 899999999993
No 20
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.05 E-value=99 Score=34.51 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHhhhcCCC
Q 021777 203 SEYLTAHYDEFFDLYEKLLTSSN 225 (307)
Q Consensus 203 aefl~~Nyd~Ff~~yn~Ll~s~N 225 (307)
.||+++|.+.|...|.++++.+|
T Consensus 225 PEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred hHHHHhhHHHHHHHHHHHHhccC
Confidence 49999999999999999998765
No 21
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=57.91 E-value=1.6e+02 Score=29.04 Aligned_cols=139 Identities=14% Similarity=0.245 Sum_probs=99.3
Q ss_pred HHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccC-------cchhhh
Q 021777 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN-------KEVALH 145 (307)
Q Consensus 73 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~-------~dial~ 145 (307)
++.-+..++.+..+......=.||.-=|+-..|..++-+.. ..+.+|+..|-+-+.....+-=. ..+-=.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk---~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK---KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 55555556667777788888899999999999999887643 24679999887655544332212 233345
Q ss_pred hhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcC-h-HHHHHHHHhhHHHHH
Q 021777 146 CGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKH-L-TVVSEYLTAHYDEFF 214 (307)
Q Consensus 146 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~H-k-~lvaefl~~Nyd~Ff 214 (307)
.|.+|-+=.-++...+|+=..+.+.-+...+..++=-|..+||..||-...+- | +-|.+.|..|=++..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl 303 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLL 303 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 67888777777888888888888888888888888889999999999886643 3 477899999966544
No 22
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=54.29 E-value=8.9 Score=28.69 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.8
Q ss_pred hhHHhhhcHhHHHHHHhcc
Q 021777 119 CVQFIENHFELLDFLVVCY 137 (307)
Q Consensus 119 ~v~Yl~~~peil~~Ll~gY 137 (307)
.|.||..|||++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999998863
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.63 E-value=51 Score=28.83 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=54.9
Q ss_pred hHHHhhhhccCCCchhhhchHHHHHHHhhc-ChHHHHHHHHhhHHHHHHHHHhhhcCC-----CceeecchhhhhHHhhc
Q 021777 168 SFELFFKFVELPTFDVASDAFSTFKDLLTK-HLTVVSEYLTAHYDEFFDLYEKLLTSS-----NYVTRRQSLKLLSEFLL 241 (307)
Q Consensus 168 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~-Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~-----NYVTkRQSLKLLgelLl 241 (307)
.|+.+...+.-++=+|.+-|-.-|.++..+ ++..+ .+++...+..++.--+.+ +.-.+++-.+.|-+.+-
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 458888889999999999999999999887 55554 444555555555544433 33444555666666665
Q ss_pred -CCCCHHHHHHHh
Q 021777 242 -EPPNSHIMKRYI 253 (307)
Q Consensus 242 -dr~N~~vM~rYi 253 (307)
|+...++..|..
T Consensus 140 ~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 140 KDKQKESLVEKLC 152 (178)
T ss_pred cHHHHHHHHHHHH
Confidence 666665555544
No 24
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.14 E-value=2.3e+02 Score=31.58 Aligned_cols=200 Identities=15% Similarity=0.199 Sum_probs=100.8
Q ss_pred HHhhhhhcCCCCCCCCHHHHHHHHHHHH--hh----cHHHHHHhcCCCCCchhh-hhHHHHHHHhhccccC--C---ccc
Q 021777 51 VTMRCMLSGDGEVEPNADQVLQLATEVC--KE----DVLILLVHKLPILGWEAR-KDLVHCWSILLKQKVD--S---TYC 118 (307)
Q Consensus 51 ~~mK~iL~G~~e~ep~~e~~~qLa~ei~--~~----dll~~Li~~l~~L~fE~R-Kdv~~If~~llR~~~~--~---~~p 118 (307)
..||.++.---.+|+-|+..--+..... +. .+|+.-....|+.+=+.+ ..=..+.++.+|.... + |.-
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~ 118 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGS 118 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcch
Confidence 3444444332233344654444444332 22 245555667777765332 2334455566664321 1 223
Q ss_pred hhHHhhh--cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcc-----hhHHHhhhhccCCCchhhhchHH--
Q 021777 119 CVQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILES-----ASFELFFKFVELPTFDVASDAFS-- 189 (307)
Q Consensus 119 ~v~Yl~~--~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~-----~~f~~fF~yv~~~~FdiasDAf~-- 189 (307)
|..+|++ .||++.-|+. -+|.|+.|.- .|+=.+ -.+|+-|+++--..=|+..++..
T Consensus 119 TLRFLckLkE~ELlepl~p-------------~IracleHrh--sYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e 183 (948)
T KOG1058|consen 119 TLRFLCKLKEPELLEPLMP-------------SIRACLEHRH--SYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTE 183 (948)
T ss_pred hhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcc--hhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhc
Confidence 6778887 6888887764 3566765531 111111 12333344443333344444433
Q ss_pred --------HHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHH
Q 021777 190 --------TFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKV 261 (307)
Q Consensus 190 --------Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl 261 (307)
-|--|++.-+..+-.||..|.|+.= .++..|+ ---+.|+..--+ .|-.---| ..+.
T Consensus 184 ~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~~Lq-------lViVE~Irkv~~--~~p~~~~~------~i~~ 247 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFNDSLQ-------LVIVELIRKVCL--ANPAEKAR------YIRC 247 (948)
T ss_pred cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccHHHH-------HHHHHHHHHHHh--cCHHHhhH------HHHH
Confidence 3555677777788888888877632 1111100 000111111111 11222222 3689
Q ss_pred HHHHhcCCCcCceeehheee
Q 021777 262 MMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 262 ~M~LL~d~sknIq~EAFhVF 281 (307)
+|++|.+.|..+.|||---.
T Consensus 248 i~~lL~stssaV~fEaa~tl 267 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTL 267 (948)
T ss_pred HHHHHhcCCchhhhhhcceE
Confidence 99999999999999986543
No 25
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.59 E-value=1.1e+02 Score=26.36 Aligned_cols=134 Identities=21% Similarity=0.298 Sum_probs=78.9
Q ss_pred hhhhHHHHHHHhhcccc--CCccchhHHhh--h-----cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcch
Q 021777 97 ARKDLVHCWSILLKQKV--DSTYCCVQFIE--N-----HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESA 167 (307)
Q Consensus 97 ~RKdv~~If~~llR~~~--~~~~p~v~Yl~--~-----~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~ 167 (307)
..||+..||..+-+-.. .+.....+++. . --|++...+.+ .|..++..-+|..+.. ++.++
T Consensus 4 ~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~---------~~~~f~~~~~~~~l~~-~lk~~ 73 (168)
T PF12783_consen 4 YVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILEN---------HGSVFRSSEEHPSLIN-LLKDD 73 (168)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHh---------CHHHHhCCcchHHHHH-HHHHH
Confidence 45889999988876441 11111122321 1 12334444432 2333321112333333 34444
Q ss_pred hHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHh-hhcCCC--ceeecchhhhhHHhhcCCC
Q 021777 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEK-LLTSSN--YVTRRQSLKLLSEFLLEPP 244 (307)
Q Consensus 168 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~-Ll~s~N--YVTkRQSLKLLgelLldr~ 244 (307)
..-.+.+.+..+.|.|..-+...|.-++.+++ .++..-.+.|+..+-. ++++++ |=.|.-+|..+.++.-++.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 44455556666779999999999999987654 3555667889998875 888877 5556668888888776543
No 26
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.33 E-value=63 Score=30.09 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=71.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh--
Q 021777 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE-- 80 (307)
Q Consensus 3 ~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~-- 80 (307)
=+|+++| ||.|.-.. .|+...++..+.+-+++-.|...|++||=.+|+.+=- .|..+.+.|=|-.+.+.
T Consensus 3 RiFG~~k-~k~p~psL---~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~-----gpaq~~~KqrAlrVLkQKK 73 (218)
T KOG1655|consen 3 RIFGRGK-PKEPPPSL---QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRP-----GPAQNALKQRALRVLKQKK 73 (218)
T ss_pred ccccCCC-CCCCChhH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHHHHHHH
Confidence 3677776 78877544 4555555443322457778888999999999998832 35555666655544433
Q ss_pred ------cHHHHHHhcCCCCCc--hhhhhHHHHHHHhhc---c-ccCCccc-----------hhHHhhhcHhHHHHHHhcc
Q 021777 81 ------DVLILLVHKLPILGW--EARKDLVHCWSILLK---Q-KVDSTYC-----------CVQFIENHFELLDFLVVCY 137 (307)
Q Consensus 81 ------dll~~Li~~l~~L~f--E~RKdv~~If~~llR---~-~~~~~~p-----------~v~Yl~~~peil~~Ll~gY 137 (307)
|-|..=-.+|..-.| |+=||..+-.+.+-- . +...+-+ .-||+...-||=..|-+-|
T Consensus 74 ~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 74 MYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 223222223332222 455666655554321 0 0001111 1355555566666666678
Q ss_pred cCcc
Q 021777 138 DNKE 141 (307)
Q Consensus 138 ~~~d 141 (307)
..||
T Consensus 154 ~~pe 157 (218)
T KOG1655|consen 154 NTPD 157 (218)
T ss_pred CCCC
Confidence 8777
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=50.83 E-value=45 Score=29.57 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch--hhhhhHHHHHHhhhhH--HHHHHhcc
Q 021777 91 PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV--ALHCGIMLRECIKFPS--LARYILES 166 (307)
Q Consensus 91 ~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di--al~~G~mLRecik~e~--la~~iL~~ 166 (307)
+.-+|+.|.++.+-...+++.......+ -+|+..=.+++..+...-.+... +-.+-..+.+++++-. +..+ -+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFP-PDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccH-HHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 5678999999988888888866322221 22322222555566555554332 2233333333332100 0000 01
Q ss_pred hhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHH-HHHHHhhhcCCCceeecchhhhhHHhhcCCC-
Q 021777 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEF-FDLYEKLLTSSNYVTRRQSLKLLSEFLLEPP- 244 (307)
Q Consensus 167 ~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~F-f~~yn~Ll~s~NYVTkRQSLKLLgelLldr~- 244 (307)
..+-.+++-+..++=-|+..|-.++..+...-. . ..+. +......+.+.|=-.|+.++.+|..++..-.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 122334444444444566667777766654211 0 2334 5556678899999999999999998886433
Q ss_pred CHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeee
Q 021777 245 NSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVM 284 (307)
Q Consensus 245 N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvF 284 (307)
+...+..-..=+.-.+.+...|.|.+..++-.|..+|-.|
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1222222111156788999999999999988887776654
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=48.84 E-value=18 Score=26.89 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=38.3
Q ss_pred HHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcC-ceeeh
Q 021777 212 EFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKN-IQISA 277 (307)
Q Consensus 212 ~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~skn-Iq~EA 277 (307)
+....+.+++.++|..+|++++.-||.+ .+++-+..+..+|.|.+.. ++.+|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i--------------~~~~~~~~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRI--------------GDPEAIPALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCC--------------HHHHTHHHHHHHHTC-SSHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4566677888999999999999999987 4677777777777775433 35443
No 29
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=47.52 E-value=1.1e+02 Score=24.58 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHH-HHHhh--cHHHHHHhcCCCCCchhhhhHHHHHHHh
Q 021777 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLAT-EVCKE--DVLILLVHKLPILGWEARKDLVHCWSIL 108 (307)
Q Consensus 40 ~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~-ei~~~--dll~~Li~~l~~L~fE~RKdv~~If~~l 108 (307)
++.++++.-.+....+.|.|+++ ||...++-. .+|++ ...+-|+.|-...--|++-.+..||..+
T Consensus 2 ~~l~eq~dgLveKytELL~Ge~~----~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 2 EKLQEQFDGLVEKYTELLLGETS----PEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEI 69 (82)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHH
Confidence 35678888888888999999876 444444333 33444 5678899999988899999999998765
No 30
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.09 E-value=59 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=32.4
Q ss_pred HHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhh
Q 021777 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILL 109 (307)
Q Consensus 73 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 109 (307)
-.+.+...+.+..|+..|..-+.+.++.++-...|+-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999998888774
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.43 E-value=2.3e+02 Score=29.90 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=92.1
Q ss_pred HHHHHHHhhcHHHHHHhcCCCCCch-hhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcc------hhh
Q 021777 72 QLATEVCKEDVLILLVHKLPILGWE-ARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKE------VAL 144 (307)
Q Consensus 72 qLa~ei~~~dll~~Li~~l~~L~fE-~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~d------ial 144 (307)
+.+|++.+.+.|..|...+..-+=+ -||.++=+.+|+.. |+ .-.++++... .++..|+++++..| .|-
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G~-~~qiqaVida-~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA---GN-QEQIQAVIDA-NLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---CC-HHHHHHHHHc-ccHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999988888877777 57779999998876 22 2257777763 66666666655544 455
Q ss_pred hhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhh---cCh----HHHHHHHHhhHHHHHHHH
Q 021777 145 HCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLT---KHL----TVVSEYLTAHYDEFFDLY 217 (307)
Q Consensus 145 ~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt---~Hk----~lvaefl~~Nyd~Ff~~y 217 (307)
..++..-.+. ...-+||.+..++.-|-+....+.=++..=++.++.-+|- ..+ ..++.+++... =.+++
T Consensus 387 aIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~g--gldki 462 (514)
T KOG0166|consen 387 AISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAG--GLDKI 462 (514)
T ss_pred HHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHcc--ChhHH
Confidence 5555555555 4455778888788878777776666666555555555543 111 34445544321 11234
Q ss_pred HhhhcCCC
Q 021777 218 EKLLTSSN 225 (307)
Q Consensus 218 n~Ll~s~N 225 (307)
..|=.|+|
T Consensus 463 E~LQ~hen 470 (514)
T KOG0166|consen 463 ENLQSHEN 470 (514)
T ss_pred HHhhcccc
Confidence 45556666
No 32
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=46.07 E-value=50 Score=29.21 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=41.5
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHh---hHHHHHHHHHhhhcCCCce
Q 021777 158 SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTA---HYDEFFDLYEKLLTSSNYV 227 (307)
Q Consensus 158 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~---Nyd~Ff~~yn~Ll~s~NYV 227 (307)
-..+|+.+|+.|.++++|++.+.|.=.-.-+.+..|.-+ +.+||.+ +...+++.++.++.-+++.
T Consensus 23 i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~-----l~~yL~~~gldv~~~i~~i~~~l~~~~~~ 90 (179)
T PF06757_consen 23 IVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKA-----LLDYLESAGLDVYYYINQINDLLGLPPLN 90 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHH-----HHHHHHHCCCCHHHHHHHHHHHHcCCcCC
Confidence 345688899999999999998877544333333333322 4467663 2334677777777666553
No 33
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=41.79 E-value=52 Score=28.93 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 021777 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 40 ~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
++..+|+.|-|..|-+-+..+.=..|.-+...+|++++-+.|+
T Consensus 64 kr~~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 64 KRVVDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4556899999999999988665566677888889988877765
No 34
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.39 E-value=12 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred hhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 220 LLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 220 Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
|..++|.-.|+.+++.||+ +.+++-+..+..+|+|++..+|..|....
T Consensus 8 l~~~~~~~vr~~a~~~L~~--------------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 55 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALGE--------------LGDPEAIPALIELLKDEDPMVRRAAARAL 55 (88)
T ss_dssp HHTSSSHHHHHHHHHHHHC--------------CTHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHH--------------cCCHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4489999999999999993 34577899999999999999988876543
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.86 E-value=2.2e+02 Score=30.07 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=81.9
Q ss_pred HHHHHhhhhhcCCCCCCCCHHHHHH----------HHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCcc
Q 021777 48 KNFVTMRCMLSGDGEVEPNADQVLQ----------LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY 117 (307)
Q Consensus 48 K~L~~mK~iL~G~~e~ep~~e~~~q----------La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~ 117 (307)
..|..+..++.......-..|+|-- =++.++..++++.|+..|..=||..||.++=..+|+.- ++..
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~ 397 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTP 397 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCH
Confidence 3555666666544332222333322 34577888999999999999999999999999998863 2222
Q ss_pred chhHHhhhcHhHHHHHHhccc--Ccchh----------hhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhh
Q 021777 118 CCVQFIENHFELLDFLVVCYD--NKEVA----------LHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVAS 185 (307)
Q Consensus 118 p~v~Yl~~~peil~~Ll~gY~--~~dia----------l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~Fdias 185 (307)
--+.||.+.. ++.-++.-.. +.++. +-.|.+..+-=. +.++.+|=+.+...++-..-...|=||..
T Consensus 398 ~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~ 475 (514)
T KOG0166|consen 398 EQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYK 475 (514)
T ss_pred HHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHH
Confidence 2456776654 4444433222 22222 222322221111 45556665666666665555555666766
Q ss_pred chHHHHHHHhh
Q 021777 186 DAFSTFKDLLT 196 (307)
Q Consensus 186 DAf~Tfkellt 196 (307)
-|+......+.
T Consensus 476 ~A~~II~~yf~ 486 (514)
T KOG0166|consen 476 KAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHhcC
Confidence 66655544443
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=36.77 E-value=28 Score=24.13 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=37.4
Q ss_pred eecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehh
Q 021777 228 TRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAF 278 (307)
Q Consensus 228 TkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAF 278 (307)
+|+.++.-||+ +-......+..|+ ++-+..++.+|+|++..++-.|.
T Consensus 3 vR~~A~~aLg~--l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~ 49 (55)
T PF13513_consen 3 VRRAAAWALGR--LAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAA 49 (55)
T ss_dssp HHHHHHHHHHC--TTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHhh--HhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHH
Confidence 47888999999 5567778888876 67788999999999888776554
No 37
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=35.87 E-value=1.3e+02 Score=33.82 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=46.6
Q ss_pred HHHHHhcchhHHHhhh---hccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCC
Q 021777 159 LARYILESASFELFFK---FVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSN 225 (307)
Q Consensus 159 la~~iL~~~~f~~fF~---yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~N 225 (307)
++.+++.+..+|..-. +--++-|+|+=-+..-+.++=-.|.. ||+++|.+.|.+++.++++-.|
T Consensus 175 l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~~m~~F~klls~~~ 241 (947)
T COG5657 175 LCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDKFMEHFCKLLSYSN 241 (947)
T ss_pred HHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHHHHHhhcc
Confidence 4677778888887764 44456677755555555555555544 9999999999999999988544
No 38
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.13 E-value=47 Score=31.08 Aligned_cols=47 Identities=19% Similarity=0.474 Sum_probs=33.4
Q ss_pred hhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHH---HHHHhhHHHHHH
Q 021777 146 CGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVS---EYLTAHYDEFFD 215 (307)
Q Consensus 146 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lva---efl~~Nyd~Ff~ 215 (307)
.=++||-|+-+++-.|.+||.. |-+++++.+.++. ++|..|+.+|++
T Consensus 35 Ilg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 35 ILGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 3457899999999999999985 3356677776666 556677766665
No 39
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.18 E-value=92 Score=27.77 Aligned_cols=53 Identities=15% Similarity=0.365 Sum_probs=11.9
Q ss_pred hhhc--hHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhc
Q 021777 183 VASD--AFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (307)
Q Consensus 183 iasD--Af~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl 241 (307)
+..| +..++-+++..+++++...-+.+.+.|++ +|...+ -..+-|++|+.+..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~----ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIE----LLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHH----HHHHcC--CChHHHHHHhhhcc
Confidence 4455 88999999999999999987777666664 555533 23345677777655
No 40
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.35 E-value=2.4e+02 Score=24.09 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=41.2
Q ss_pred CCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHh
Q 021777 178 LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239 (307)
Q Consensus 178 ~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgel 239 (307)
....++...+...+|.++..+.. ....+. ....+..+-..|.|+++=||.+++.+|+-+
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G-~~~v~~--~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYG-LEAVLS--HPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHH-HHHHHC--SSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHH-HHHHHc--CcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 35567777888888888875543 223333 234567788889999999999999999865
No 41
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=28.99 E-value=1.4e+02 Score=27.31 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHhhcc
Q 021777 13 TPLEVVKATKVSLMALD 29 (307)
Q Consensus 13 tP~elVr~~~e~l~~l~ 29 (307)
+|.+-+-.+++++..|.
T Consensus 24 ~~~~AIl~Lk~~~~~L~ 40 (191)
T PTZ00446 24 EIYKAILKNREAIDALE 40 (191)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 46677777777777764
No 42
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=28.83 E-value=56 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcC
Q 021777 9 SRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSG 59 (307)
Q Consensus 9 k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G 59 (307)
|++|.|+-+=+.++|.+.++....+ +=.-+.+....+|+|...-+|=+|
T Consensus 121 KRqR~psaYn~f~k~ei~rik~~~p--~ishkeaFs~aAknW~h~phihfg 169 (170)
T PF04690_consen 121 KRQRVPSAYNRFMKEEIQRIKAENP--DISHKEAFSAAAKNWAHFPHIHFG 169 (170)
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhhhCcccccC
Confidence 5689999999999999999986442 223467788999999988887666
No 43
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=28.41 E-value=1.5e+02 Score=24.34 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhh----cHHHHHHhcC---CCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHH
Q 021777 60 DGEVEPNADQVLQLATEVCKE----DVLILLVHKL---PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDF 132 (307)
Q Consensus 60 ~~e~ep~~e~~~qLa~ei~~~----dll~~Li~~l---~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~ 132 (307)
+++..|.+....++++..++. ..+..|...| +.=.+-..-.+.++...|++.-.. -+++.+..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~---~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE---RFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H---HHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHhh
Confidence 334577788888999888774 2344444444 444444444455555555553221 146666666667766
Q ss_pred HHhcccCcc-hhhhhhHHHHHHh
Q 021777 133 LVVCYDNKE-VALHCGIMLRECI 154 (307)
Q Consensus 133 Ll~gY~~~d-ial~~G~mLReci 154 (307)
|. .|..+| -.--.|.-+|+-+
T Consensus 91 l~-~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 LQ-DFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp GG-G---BBTTSTBHHHHHHHHH
T ss_pred cc-eeeccCCCCccHHHHHHHHH
Confidence 63 333222 1334555566654
No 44
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.56 E-value=1.8e+02 Score=27.01 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=30.5
Q ss_pred CCccCCCCC--CCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhh
Q 021777 1 MSFSFFKPS--RPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRC 55 (307)
Q Consensus 1 m~~~f~~~k--~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~ 55 (307)
|.-+|+++| .+-|+.|-++.+++.+..|+ ++-++..+|++++-..+|.
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~-------kKi~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD-------ARINKIDAELMKLKEQIQR 50 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 555676554 23578888888888887764 3335566666666655554
No 45
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.99 E-value=4.2e+02 Score=31.26 Aligned_cols=141 Identities=20% Similarity=0.294 Sum_probs=80.6
Q ss_pred CCchhhhhHHHHHHHhhccccCCc--cch------hH---HhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhh-----
Q 021777 93 LGWEARKDLVHCWSILLKQKVDST--YCC------VQ---FIENHFELLDFLVVCYDNKEVALHCGIMLRECIKF----- 156 (307)
Q Consensus 93 L~fE~RKdv~~If~~llR~~~~~~--~p~------v~---Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~----- 156 (307)
+.-+.+-+...+|+.++.+-..++ .|. ++ -+++.|-.+.- -|-|-|+-+.|++|--|.+|.
T Consensus 382 lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e---~yvNfDCd~~csnlfedl~k~Ltkna 458 (1386)
T KOG0928|consen 382 LREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTE---MYVNFDCDLYCSNLFEDLIKLLTKNA 458 (1386)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHH---HHHhcCCchhhhhhHHHHHHHHHHcc
Confidence 555667778888888887644322 221 11 11223333322 366667777777776666543
Q ss_pred ------------hHHH--------HHHhcc-------------hhHHHhhhhcc--CCCchhhhchHH----------HH
Q 021777 157 ------------PSLA--------RYILES-------------ASFELFFKFVE--LPTFDVASDAFS----------TF 191 (307)
Q Consensus 157 ------------e~la--------~~iL~~-------------~~f~~fF~yv~--~~~FdiasDAf~----------Tf 191 (307)
++++ ..+-.. ..+|..|.... ..-|...++.|. +-
T Consensus 459 fP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~e 538 (1386)
T KOG0928|consen 459 FPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQE 538 (1386)
T ss_pred CCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHh
Confidence 1111 111110 12444444333 344555665552 22
Q ss_pred HHHhh--cChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcC
Q 021777 192 KDLLT--KHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILE 255 (307)
Q Consensus 192 kellt--~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~ 255 (307)
+-++. -.++.|++||..| -|-.-|.+|++|-||.|.++..-||+-
T Consensus 539 k~li~~~~d~~~~~~ffr~n-------------------~rLdKk~iGdfLc~~k~~~vLn~Fi~t 585 (1386)
T KOG0928|consen 539 KGLIPSDLDPTSVAEFFRYN-------------------PRLDKKTIGDFLCDPKNVSVLNEFIGT 585 (1386)
T ss_pred cCccCCCCChHHHHHHHHhC-------------------ccccHHHHHHHhcCcchHHHHHHHHHh
Confidence 23344 2345666666554 788999999999999999999999975
No 46
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.78 E-value=1e+03 Score=27.36 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=98.6
Q ss_pred hhhhhcCCCCCCCCH--HHHHHHHHHHHhhcHHHHHHhcC--CCCCchhhhhHHHHHHHhhccccCCc-cch---hHHhh
Q 021777 53 MRCMLSGDGEVEPNA--DQVLQLATEVCKEDVLILLVHKL--PILGWEARKDLVHCWSILLKQKVDST-YCC---VQFIE 124 (307)
Q Consensus 53 mK~iL~G~~e~ep~~--e~~~qLa~ei~~~dll~~Li~~l--~~L~fE~RKdv~~If~~llR~~~~~~-~p~---v~Yl~ 124 (307)
+.+++-|+-+++|.. .+-+||.+---..+++.-|++-. ...++-.|..++.-|.|.+-++-+++ .|. -.+=.
T Consensus 6 l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 6 LLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEE 85 (1010)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChH
Confidence 334444444443332 23334444333334444443322 45666677777777888775543332 222 11111
Q ss_pred h----cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcc---hhHHHhhhh----ccCCCchhhhchHHHHHH
Q 021777 125 N----HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILES---ASFELFFKF----VELPTFDVASDAFSTFKD 193 (307)
Q Consensus 125 ~----~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~---~~f~~fF~y----v~~~~FdiasDAf~Tfke 193 (307)
. +-.|+++++++.+. +-...| +|+ +.|++. +..|.++++ ++++.=-.-=-|+-.+.+
T Consensus 86 dk~~irenIl~~iv~~p~~--iRvql~----~~l------~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVPEL--IRVQLT----ACL------NTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQ 153 (1010)
T ss_pred HHHHHHHHHHHHHHhCchH--HHHHHH----HHH------HHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 1 45677777776221 111222 232 235544 244666664 344332222346666777
Q ss_pred HhhcCh-------HHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhc--CCCCHHHHHHHhcChhhHHHHHH
Q 021777 194 LLTKHL-------TVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL--EPPNSHIMKRYILEVRFLKVMMT 264 (307)
Q Consensus 194 llt~Hk-------~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl--dr~N~~vM~rYis~~~NLKl~M~ 264 (307)
+...|+ .-..+-+..=+...-+..++|+..+|| ||.+++--+|- --..+--.-++..+++.+---|.
T Consensus 154 L~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 154 LFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 766665 111112222244455567789999987 66666554442 11222233456777777777777
Q ss_pred HhcC
Q 021777 265 LLKD 268 (307)
Q Consensus 265 LL~d 268 (307)
++..
T Consensus 230 l~l~ 233 (1010)
T KOG1991|consen 230 LFLS 233 (1010)
T ss_pred HHHH
Confidence 7653
No 47
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.65 E-value=2.2e+02 Score=29.40 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=53.5
Q ss_pred HHHHHHhhcHHHHHHhcC-CCCCchhhhhHHHHHHHhhccccCC---------ccchhHHhhhcHhHHHHHHhc-cc-Cc
Q 021777 73 LATEVCKEDVLILLVHKL-PILGWEARKDLVHCWSILLKQKVDS---------TYCCVQFIENHFELLDFLVVC-YD-NK 140 (307)
Q Consensus 73 La~ei~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llR~~~~~---------~~p~v~Yl~~~peil~~Ll~g-Y~-~~ 140 (307)
+.+=+...+++..||..| |.-+-+....+++++..++|...+. .-|....|++ |+++..|+.. .+ ..
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCC
Confidence 444445589999999999 6888899999999999998754321 1345666666 6666665542 21 23
Q ss_pred chhhhhh-HHHHHHhh
Q 021777 141 EVALHCG-IMLRECIK 155 (307)
Q Consensus 141 dial~~G-~mLRecik 155 (307)
+.++..| +|+.|.||
T Consensus 133 ~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 133 GSSLVNGVSILIELIR 148 (475)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5555544 36666664
No 48
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=24.55 E-value=5.8e+02 Score=23.74 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCCh-HHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhc
Q 021777 11 PKTP-LEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHK 89 (307)
Q Consensus 11 ~ktP-~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 89 (307)
+.+| .+.++.+.+.+.. ++..+|+...+..++....|.+. ++..-.+.-+.+.++..
T Consensus 6 e~~P~~~~a~~l~~~ir~------------k~~~eei~~~l~~i~~~~~~~~~-~~~~~~i~v~~q~ll~~--------- 63 (253)
T PF09090_consen 6 ESLPFHALAQKLLDLIRK------------KAPPEEISELLEEIEEPAEEHGS-DFDKFVIDVFVQCLLHI--------- 63 (253)
T ss_dssp TTSTTHHHHHHHHHHHHT------------T--HHHHHHHHTTS-------------HHHHHHHHHHHHHH---------
T ss_pred CCCccHHHHHHHHHHHHc------------CCCHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHh---------
Confidence 4555 5667777777753 34578999999999999888766 55555555555554432
Q ss_pred CCCCCchhhhhHHHHHHHhhccc
Q 021777 90 LPILGWEARKDLVHCWSILLKQK 112 (307)
Q Consensus 90 l~~L~fE~RKdv~~If~~llR~~ 112 (307)
..|..++.++.+=|+.
T Consensus 64 -------GSkS~SH~~~~lery~ 79 (253)
T PF09090_consen 64 -------GSKSFSHVLSALERYK 79 (253)
T ss_dssp -------TTTSHHHHHHHHHHTH
T ss_pred -------cCchHHHHHHHHHHHH
Confidence 4566666666555543
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=24.12 E-value=5.8e+02 Score=26.23 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCC-CceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCc--Cceeehhee
Q 021777 213 FFDLYEKLLTSS-NYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSK--NIQISAFHI 280 (307)
Q Consensus 213 Ff~~yn~Ll~s~-NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sk--nIq~EAFhV 280 (307)
+++++...+.++ +==.+..++..|+++|-.+....+ |+... .++.++.+|+..+- .+|+++-.+
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~---f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA---FVLAD-GVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH---HHHcc-CHHHHHHHHhhccccHHHHHHHHHH
Confidence 555666666543 111233457789999977665543 55444 89999999987553 345555433
No 50
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.39 E-value=61 Score=26.81 Aligned_cols=77 Identities=18% Similarity=0.375 Sum_probs=54.2
Q ss_pred HHHHHhhHHHHHHHHHh-hhcCC---CceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCC--CcCceee
Q 021777 203 SEYLTAHYDEFFDLYEK-LLTSS---NYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS--SKNIQIS 276 (307)
Q Consensus 203 aefl~~Nyd~Ff~~yn~-Ll~s~---NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~--sknIq~E 276 (307)
++||.+|.=..++.++. +.... .|.-|+++++=+|+++- +|-.+|++.- =-||..|+.- .+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~--pQI~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSAL--PQIMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHhCchhHHHH
Confidence 67899988777777775 55555 78889999999999985 4556665532 2344444432 3448889
Q ss_pred hheeeeeeeec
Q 021777 277 AFHIFKVMIFH 287 (307)
Q Consensus 277 AFhVFKvFVAN 287 (307)
||-+..+||-.
T Consensus 74 al~~W~~~i~~ 84 (107)
T smart00802 74 ALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHh
Confidence 99988888754
No 51
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=5.1e+02 Score=28.77 Aligned_cols=152 Identities=18% Similarity=0.288 Sum_probs=99.4
Q ss_pred HHhhhcHhHHHHHHhcccCcchhhhhhHH---HHHHhhhhHHHHHHhcc--------hhHHHhhhhccCCCchhhhchHH
Q 021777 121 QFIENHFELLDFLVVCYDNKEVALHCGIM---LRECIKFPSLARYILES--------ASFELFFKFVELPTFDVASDAFS 189 (307)
Q Consensus 121 ~Yl~~~peil~~Ll~gY~~~dial~~G~m---LRecik~e~la~~iL~~--------~~f~~fF~yv~~~~FdiasDAf~ 189 (307)
.|+...||.+..|+.--+.+|.-..=|.+ =.-| |.-|. +|.+ .-+-+|++|.+.++=-|-|+|..
T Consensus 121 ~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc---EDsa~-~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~ 196 (885)
T KOG2023|consen 121 GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKIC---EDSAQ-FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVG 196 (885)
T ss_pred cccccchhHHHHHHHHhcCCcccccchhHHHHHHHH---hhhHH-HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHh
Confidence 67777899999999987777644333333 1212 22232 2222 13568899999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc---hhhhhHHhhcCCCCHHHHHHHhcChhhHH-HHHHH
Q 021777 190 TFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ---SLKLLSEFLLEPPNSHIMKRYILEVRFLK-VMMTL 265 (307)
Q Consensus 190 Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ---SLKLLgelLldr~N~~vM~rYis~~~NLK-l~M~L 265 (307)
.....+... ++=|..|.|.|.+..-.|-..++=-.|.| |+-+|-|...| |-+..-.|.- .|...
T Consensus 197 cvNq~i~~~----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--------kl~phl~~IveyML~~ 264 (885)
T KOG2023|consen 197 CVNQFIIIQ----TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--------KLVPHLDNIVEYMLQR 264 (885)
T ss_pred hhhheeecC----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--------hcccchHHHHHHHHHH
Confidence 877765532 34467889999999999988888777776 45555554443 3344444443 34455
Q ss_pred hcCCCcCceeehheeeeeeeecC
Q 021777 266 LKDSSKNIQISAFHIFKVMIFHF 288 (307)
Q Consensus 266 L~d~sknIq~EAFhVFKvFVANP 288 (307)
-+|...+|.+||---.=-+.-+|
T Consensus 265 tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 265 TQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred ccCcchhHHHHHHHHHHHHhcCc
Confidence 57788889999865444444444
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.68 E-value=2.1e+02 Score=25.10 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHH--HHHHHHHHHHhh
Q 021777 13 TPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNAD--QVLQLATEVCKE 80 (307)
Q Consensus 13 tP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e--~~~qLa~ei~~~ 80 (307)
|-.|+-+.++..|..++. +.++.+.++..-++..-.+ .|.+|.|-..| ...++|+++..+
T Consensus 2 ~k~efL~~L~~~L~~lp~------~e~~e~l~~Y~e~f~d~~~--~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPE------EEREEILEYYEEYFDDAGE--EGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhhh--CCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 457888999999987643 2335556666666654321 34433221111 233567776654
No 53
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.14 E-value=4.9e+02 Score=22.09 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=58.0
Q ss_pred CCCH-HHHHHHHHHHHhh-----cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc
Q 021777 64 EPNA-DQVLQLATEVCKE-----DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY 137 (307)
Q Consensus 64 ep~~-e~~~qLa~ei~~~-----dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY 137 (307)
+|.| -.-.++|+..+.+ +++..|...|.+=+--.+-.+-.|...+.+.-. ..++.++..|..++..+...-
T Consensus 15 ~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~---~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 15 EPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN---SDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred CCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC---HHHHHHHHHhHHHHHHHHHcC
Confidence 4444 3455666666665 566677777777666666778888888887642 336889999999999986532
Q ss_pred cCcc--hhhhhhHHHHHHh
Q 021777 138 DNKE--VALHCGIMLRECI 154 (307)
Q Consensus 138 ~~~d--ial~~G~mLReci 154 (307)
.-|| -.---|..+|+-.
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred CCCCcccCcchhHHHHHHH
Confidence 2233 3445677777665
No 54
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=22.10 E-value=1e+02 Score=29.85 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=32.8
Q ss_pred chhhhchHHHHHHHhhcCh-------HHHHHHHHhhHHHHHHHHHhhhcCCCcee
Q 021777 181 FDVASDAFSTFKDLLTKHL-------TVVSEYLTAHYDEFFDLYEKLLTSSNYVT 228 (307)
Q Consensus 181 FdiasDAf~Tfkellt~Hk-------~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVT 228 (307)
++|.-..+.|..+....|. .-|.|+|..|.|||-.++.. ...+||.
T Consensus 49 ~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~idwl~~~l~~--~~~~Y~l 101 (290)
T KOG1533|consen 49 CAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANIDWLLEKLKP--LTDHYVL 101 (290)
T ss_pred CcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhhHHHHHHhhh--ccCcEEE
Confidence 4444444555555555554 45779999999999999988 7788873
No 55
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.82 E-value=4e+02 Score=29.82 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=61.4
Q ss_pred hhhHHHHHHhhhhHHHHHHhc--chhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhc
Q 021777 145 HCGIMLRECIKFPSLARYILE--SASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLT 222 (307)
Q Consensus 145 ~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~ 222 (307)
.||++.-+.++.++.....=. ...+.-+-+..+..+|=+-+-|.+.+..++....+.+.. -.+|...--.=++
T Consensus 322 icaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~-----r~ev~~lv~r~lq 396 (1128)
T COG5098 322 ICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR-----RHEVIRLVGRRLQ 396 (1128)
T ss_pred HHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch-----HHHHHHHHHHHhh
Confidence 456666666655533321100 011233344566788888899999999988766554431 1234444444456
Q ss_pred CCCceeecchhhhhHHhhcCCCCHHHHH
Q 021777 223 SSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (307)
Q Consensus 223 s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (307)
.-.-|.||.|+||++.||+ ||=|.+|-
T Consensus 397 Drss~VRrnaikl~SkLL~-~HPF~~~h 423 (1128)
T COG5098 397 DRSSVVRRNAIKLCSKLLM-RHPFASEH 423 (1128)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCChhhhc
Confidence 6667899999999999987 56666664
No 56
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.19 E-value=1.8e+02 Score=31.33 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=0.0
Q ss_pred hhHHHhhhhccCCCchhhhchHHHHHHHhhcCh------HHHHHHHHhhH---------------HHHHHHHHhhhcCCC
Q 021777 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTKHL------TVVSEYLTAHY---------------DEFFDLYEKLLTSSN 225 (307)
Q Consensus 167 ~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk------~lvaefl~~Ny---------------d~Ff~~yn~Ll~s~N 225 (307)
+.+..+|.+++.+.=.+.=|+-+-++++++.-+ .+|-.|++.|= -.||...|..+..+.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch
Q ss_pred ceeecchhhhhHHhh
Q 021777 226 YVTRRQSLKLLSEFL 240 (307)
Q Consensus 226 YVTkRQSLKLLgelL 240 (307)
+|-++|-|||.++
T Consensus 84 --~Rl~~L~Ll~~~v 96 (668)
T PF04388_consen 84 --YRLQALTLLGHFV 96 (668)
T ss_pred --hHHHHHHHHHHHH
Done!