Query 021777
Match_columns 307
No_of_seqs 127 out of 221
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 3E-118 1E-122 855.3 17.6 299 1-302 1-299 (341)
2 4hxt_A De novo protein OR329; 97.5 0.0056 1.9E-07 51.9 16.1 206 74-290 37-245 (252)
3 4db8_A Armadillo-repeat protei 97.0 0.0056 1.9E-07 52.6 10.9 195 75-280 48-245 (252)
4 4hxt_A De novo protein OR329; 96.8 0.03 1E-06 47.3 13.9 194 82-286 3-199 (252)
5 2jdq_A Importin alpha-1 subuni 96.2 0.12 4E-06 47.7 14.8 198 77-286 145-347 (450)
6 4db6_A Armadillo repeat protei 95.9 0.051 1.7E-06 45.3 9.7 186 84-280 15-203 (210)
7 4db6_A Armadillo repeat protei 95.6 0.28 9.7E-06 40.6 13.3 159 74-240 47-208 (210)
8 1wa5_B Importin alpha subunit; 95.0 0.41 1.4E-05 46.1 14.2 199 78-287 212-413 (530)
9 4db8_A Armadillo-repeat protei 94.8 0.88 3E-05 38.6 14.3 157 76-240 91-250 (252)
10 1xqr_A HSPBP1 protein; armadil 94.5 1.4 4.7E-05 40.6 15.7 208 16-242 25-239 (296)
11 4b8j_A Importin subunit alpha- 94.0 0.64 2.2E-05 44.5 12.9 198 78-287 199-401 (528)
12 1wa5_B Importin alpha subunit; 93.8 0.4 1.4E-05 46.1 11.0 198 80-285 256-456 (530)
13 4fdd_A Transportin-1; heat rep 93.6 1.7 5.8E-05 44.4 15.8 183 84-285 93-284 (852)
14 4b8j_A Importin subunit alpha- 93.4 0.35 1.2E-05 46.3 9.8 199 77-286 156-358 (528)
15 3tpo_A Importin subunit alpha- 93.3 6 0.0002 38.3 18.5 184 81-274 251-437 (529)
16 3ul1_B Importin subunit alpha- 93.0 5.2 0.00018 38.6 17.5 185 81-275 232-419 (510)
17 2jdq_A Importin alpha-1 subuni 92.8 1 3.5E-05 41.3 11.7 199 77-286 103-305 (450)
18 3tpo_A Importin subunit alpha- 91.2 4 0.00014 39.5 14.4 199 75-281 287-492 (529)
19 1jdh_A Beta-catenin; beta-cate 90.0 2.1 7.2E-05 40.2 10.8 190 75-279 221-419 (529)
20 1jdh_A Beta-catenin; beta-cate 89.4 1.4 4.9E-05 41.4 9.1 192 81-284 266-487 (529)
21 2z6g_A B-catenin; FULL-length, 88.9 10 0.00035 38.9 15.9 182 79-271 148-332 (780)
22 4fdd_A Transportin-1; heat rep 88.7 1.1 3.6E-05 45.9 8.2 188 85-284 52-242 (852)
23 3ul1_B Importin subunit alpha- 88.2 5.3 0.00018 38.6 12.6 199 75-281 268-473 (510)
24 3grl_A General vesicular trans 88.1 15 0.00052 37.9 16.3 170 49-224 82-266 (651)
25 3now_A UNC-45 protein, SD10334 87.5 11 0.00039 39.7 15.3 196 70-279 484-687 (810)
26 2qk2_A LP04448P; mini spindles 87.4 3.7 0.00013 35.2 9.8 175 86-282 20-201 (242)
27 1ibr_B P95, importin beta-1 su 84.0 13 0.00044 33.8 12.2 149 126-287 126-289 (462)
28 2bpt_A Importin beta-1 subunit 83.6 20 0.00068 35.7 14.3 184 82-281 225-435 (861)
29 2z6h_A Catenin beta-1, beta-ca 83.2 30 0.001 34.1 15.3 182 78-270 11-195 (644)
30 3nmw_A APC variant protein; AR 82.0 9.8 0.00034 35.7 10.8 164 76-246 165-339 (354)
31 1qgr_A Protein (importin beta 80.5 14 0.00047 36.9 11.8 190 82-287 218-438 (876)
32 2x19_B Importin-13; nuclear tr 80.4 36 0.0012 34.9 15.2 147 127-276 725-883 (963)
33 2z6g_A B-catenin; FULL-length, 79.6 47 0.0016 34.0 15.8 197 76-287 229-429 (780)
34 3now_A UNC-45 protein, SD10334 78.9 20 0.00068 37.9 12.8 218 40-280 509-731 (810)
35 1xqr_A HSPBP1 protein; armadil 78.2 4.1 0.00014 37.4 6.6 181 95-286 54-238 (296)
36 1u6g_C TIP120 protein, CAND1; 78.0 5.5 0.00019 42.4 8.4 148 82-243 49-206 (1230)
37 2vgl_B AP-2 complex subunit be 77.9 35 0.0012 33.5 13.8 176 82-283 50-265 (591)
38 2z6h_A Catenin beta-1, beta-ca 77.5 57 0.002 32.0 16.6 195 75-284 92-290 (644)
39 3nmz_A APC variant protein; pr 76.5 23 0.0008 34.5 11.9 162 76-244 281-453 (458)
40 1upk_A MO25 protein; transfera 76.3 26 0.00089 33.5 11.7 150 73-244 156-314 (341)
41 3qml_C Protein SLS1, nucleotid 72.7 11 0.00037 35.8 7.9 52 80-136 70-122 (315)
42 1qgr_A Protein (importin beta 72.6 10 0.00034 37.9 8.2 185 93-285 49-245 (876)
43 1b3u_A Protein (protein phosph 71.0 38 0.0013 31.7 11.5 187 78-286 278-470 (588)
44 2qk2_A LP04448P; mini spindles 70.6 19 0.00064 30.7 8.6 151 92-258 68-221 (242)
45 3ltj_A Alpharep-4; protein eng 69.3 40 0.0014 27.3 10.1 145 81-278 45-190 (201)
46 3dad_A FH1/FH2 domain-containi 69.1 81 0.0028 30.0 15.4 138 44-196 133-286 (339)
47 1b3u_A Protein (protein phosph 68.0 11 0.00038 35.5 7.1 104 170-285 444-547 (588)
48 2bpt_A Importin beta-1 subunit 65.9 17 0.00057 36.2 8.2 106 172-285 602-710 (861)
49 3ltm_A Alpha-REP4; protein eng 64.8 53 0.0018 26.7 10.0 156 81-288 50-205 (211)
50 3ltj_A Alpharep-4; protein eng 63.5 57 0.002 26.3 10.7 122 78-239 73-196 (201)
51 3ltm_A Alpha-REP4; protein eng 62.0 20 0.00068 29.4 6.8 54 214-281 114-167 (211)
52 1ibr_B P95, importin beta-1 su 60.2 34 0.0012 31.0 8.6 187 92-286 48-246 (462)
53 1wa5_C Importin alpha RE-expor 57.2 1.8E+02 0.0062 30.0 14.9 102 92-198 48-154 (960)
54 1w63_A Adapter-related protein 55.8 1.4E+02 0.0047 29.5 12.8 47 174-221 186-232 (618)
55 2qk1_A Protein STU2; STU2P, XM 54.9 18 0.00062 31.8 5.6 176 91-278 26-212 (249)
56 2f31_A Diaphanous protein homo 51.2 1.1E+02 0.0038 26.6 10.2 38 100-142 73-110 (233)
57 1u6g_C TIP120 protein, CAND1; 50.8 1.2E+02 0.0043 32.0 12.2 193 80-286 85-284 (1230)
58 1xm9_A Plakophilin 1; armadill 48.4 1.8E+02 0.0061 27.4 12.3 122 72-200 321-452 (457)
59 3eg5_B Protein diaphanous homo 43.9 1.8E+02 0.0061 27.5 11.0 101 11-141 65-175 (383)
60 3grl_A General vesicular trans 42.4 16 0.00053 37.9 3.5 62 217-279 127-188 (651)
61 1w63_A Adapter-related protein 40.5 46 0.0016 33.0 6.6 97 171-286 354-451 (618)
62 3nmz_A APC variant protein; pr 37.7 2.9E+02 0.0098 26.7 12.5 190 80-280 242-444 (458)
63 2x1g_F Cadmus; transport prote 37.1 2E+02 0.0069 29.5 10.9 152 94-254 706-871 (971)
64 4hat_C Exportin-1; heat repeat 36.4 1.7E+02 0.0056 31.4 10.4 85 138-224 816-911 (1023)
65 1oyz_A Hypothetical protein YI 34.7 2.1E+02 0.0071 24.2 10.3 57 213-281 160-216 (280)
66 2bnx_A Diaphanous protein homo 32.9 21 0.00073 34.0 2.6 101 10-140 2-112 (386)
67 1xm9_A Plakophilin 1; armadill 32.1 1.9E+02 0.0065 27.2 9.2 116 127-247 5-122 (457)
68 3nmw_A APC variant protein; AR 31.0 3.2E+02 0.011 25.2 12.3 196 80-287 126-335 (354)
69 1w9c_A CRM1 protein, exportin 30.9 2.1E+02 0.0073 26.8 9.1 129 91-225 83-228 (321)
70 2yru_A Steroid receptor RNA ac 30.5 75 0.0026 25.6 5.1 45 40-84 35-79 (118)
71 3gi1_A LBP, laminin-binding pr 27.3 1.1E+02 0.0038 27.6 6.3 72 11-82 127-229 (286)
72 2prs_A High-affinity zinc upta 27.2 1.2E+02 0.0041 27.1 6.5 71 11-81 122-223 (284)
73 2o1e_A YCDH; alpha-beta protei 24.0 1.2E+02 0.0041 27.7 5.9 71 11-81 138-239 (312)
74 3tjz_B Coatomer subunit gamma; 23.4 4.6E+02 0.016 24.5 11.8 177 81-282 68-275 (355)
75 2jqq_A Conserved oligomeric go 23.0 3.8E+02 0.013 23.7 8.5 77 15-94 75-154 (204)
76 3cx3_A Lipoprotein; zinc-bindi 22.9 1.3E+02 0.0046 26.8 5.9 72 11-82 125-227 (284)
77 3ujp_A Mn transporter subunit; 22.7 2.2E+02 0.0074 26.1 7.4 72 11-82 136-240 (307)
78 1vdy_A Hypothetical protein (R 20.9 2.5E+02 0.0084 23.2 6.7 96 65-165 27-130 (140)
79 1pq4_A Periplasmic binding pro 20.3 1.9E+02 0.0066 25.9 6.5 71 11-81 138-237 (291)
80 3mfq_A TROA, high-affinity zin 20.2 2.1E+02 0.0072 25.6 6.7 71 11-81 109-212 (282)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=2.8e-118 Score=855.27 Aligned_cols=299 Identities=43% Similarity=0.693 Sum_probs=271.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 021777 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (307)
Q Consensus 1 m~~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~ 80 (307)
|+|. |++ +||||+|+||+++|+|.+|+.++. ++++.+|++|||+|+|++||.+|+|++|+||+||+|+||++|+|++
T Consensus 1 ~~m~-F~~-~~ktP~elVr~l~d~l~~l~~~~~-~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 1 MPFP-FGK-SHKSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CCCC-CCC-CCCCHHHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 7888 444 599999999999999999986432 2345578999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
|+|++||.+|++||||+|||+++||++++|+++|+++|+|+||++||||+++|++||+++|+|++||+|||||+|||++|
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++||+|++||+||+|++.|+||||||||+||||+||+||++|||||++|||+||++||+||+|+||||||||||||||||
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCCccceeecc
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSFSLPVYIST 302 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~~~~~~~~~ 302 (307)
+||+|++||+|||+|++|||+||+||+|+|||||+|||||||||||||++++++..-...|+
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr 299 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ 299 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876544444
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.48 E-value=0.0056 Score=51.89 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=155.4
Q ss_pred HHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHH
Q 021777 74 ATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLR 151 (307)
Q Consensus 74 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLR 151 (307)
...+.+.+.+..|+..|..=+-+.|..+.....++.....+ ..+.+.. ...+..|+.-. +++++...+-..|.
T Consensus 37 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH----HHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556678899999999988888999999999988764322 2333332 33444444432 45677777778888
Q ss_pred HHh-hhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeec
Q 021777 152 ECI-KFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRR 230 (307)
Q Consensus 152 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkR 230 (307)
.+. ..+.....+.....+..+.+.+..++-++...|..++..+-..+......+.... .+...-+++.+++.-+++
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~ 188 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLVKLLTSTDSEVQK 188 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHTTCSCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHHHHHHCCCCHHHHH
Confidence 877 5777888888888888999999999999999999999998776666555555543 667778899999999999
Q ss_pred chhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCC
Q 021777 231 QSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLH 290 (307)
Q Consensus 231 QSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~ 290 (307)
.++..|+.+.. .+-. ..+++-+..-+..++.+|++++..+|-+|..+..-+...+.+
T Consensus 189 ~a~~~L~~l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 189 EAARALANIAS--GPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHTT--SBHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHc--CCHH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 99999999986 2333 345566678899999999999999999998777666555444
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.99 E-value=0.0056 Score=52.57 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=143.3
Q ss_pred HHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHH
Q 021777 75 TEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRE 152 (307)
Q Consensus 75 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRe 152 (307)
..+...+.+..|+..|..=+-+.|..+..+..++....... .+.+.. ...+..|+.-- +++++--.+-..|..
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH----HHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35667789999999998888889999999988887643321 233332 23444444432 355666677777777
Q ss_pred HhhhhHHH-HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc
Q 021777 153 CIKFPSLA-RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ 231 (307)
Q Consensus 153 cik~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ 231 (307)
...++... ..+.....+..+.+.++.++-++...|..++..+-.............+ .....-++|.+++--++..
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~ 199 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALVQLLSSPNEQILQE 199 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHHHGGGCSSHHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHHHHHCCCCHHHHHH
Confidence 77766666 7777888888889999999999999999999998876655555554433 5667778999999999999
Q ss_pred hhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhee
Q 021777 232 SLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (307)
Q Consensus 232 SLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhV 280 (307)
++..|+.+.. .+-.. ...+-+..-+..++.+|++.+..+|-+|..+
T Consensus 200 a~~~L~~l~~--~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 200 ALWALSNIAS--GGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp HHHHHHHHTT--SCHHH-HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HHHHHHHHhc--CCHHH-HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999984 23232 3344456788999999999999888887654
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.82 E-value=0.03 Score=47.27 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=145.3
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHHHhhh-hH
Q 021777 82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRECIKF-PS 158 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRecik~-e~ 158 (307)
.+..|+..|..=+-+.|..+...+.++...... ..+.+.. ..++..|+.-- +++++-..+-..|..+..+ +.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPAS----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 466778888877888899999988888765431 2333332 24444444432 3466777777778887776 88
Q ss_pred HHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHH
Q 021777 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE 238 (307)
Q Consensus 159 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLge 238 (307)
....+.....+..+.+.++.++=++...|..++..+-..+........... .+...-+++.+++--+++.++..|+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999876776666666543 66777789999999999999999999
Q ss_pred hhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 239 lLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
+..+.. -..+.+-+..-+..++.+|++++..+|.+|....--+.+
T Consensus 155 l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 155 IASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCH---HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 986432 223445557789999999999999999888776655443
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.20 E-value=0.12 Score=47.69 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=139.5
Q ss_pred HHhhcHHHHHHhcCCC-CCchhhhhHHHHHHHhhccc-cCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHH
Q 021777 77 VCKEDVLILLVHKLPI-LGWEARKDLVHCWSILLKQK-VDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRE 152 (307)
Q Consensus 77 i~~~dll~~Li~~l~~-L~fE~RKdv~~If~~llR~~-~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRe 152 (307)
+...+.+..|+..+.. -+-+.|+.++..+.++.+.. +..+. ..+ ..++..|+..- +++++...+...|+.
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~---~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF---AKV---SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG---GGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3445788899999985 78899999999999998765 32222 122 33444444332 344555556666666
Q ss_pred Hhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc
Q 021777 153 CIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ 231 (307)
Q Consensus 153 cik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ 231 (307)
+..+ +.....+...+.+..+.+.+..++-++...|..++..+.+.........+.. ......-++|.+++--+|+.
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~vr~~ 295 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC---SALQSLLHLLSSPKESIKKE 295 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHTTCSSHHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHC---ccHHHHHHHHcCCCHHHHHH
Confidence 6654 3445566666778888888888999999999999999887665554444443 36667778999999999999
Q ss_pred hhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 232 SLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 232 SLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
++..||.+.. .+...+...+ +..-+..++.+|++.+..+|-+|..+.--++.
T Consensus 296 a~~~L~~l~~--~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 296 ACWTISNITA--GNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHTT--SCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999875 3444444333 34678889999999988899888776655544
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.85 E-value=0.051 Score=45.28 Aligned_cols=186 Identities=14% Similarity=0.114 Sum_probs=131.0
Q ss_pred HHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHHHhh-hhHHH
Q 021777 84 ILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRECIK-FPSLA 160 (307)
Q Consensus 84 ~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRecik-~e~la 160 (307)
..|+.-|..=+-+.|..+.....++.+.... ..+.+.. ...+..|+..- +++++--.+-..|..+.. .+...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3444445555777888888888887654322 1222322 23333443322 255666666677777664 56666
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
..+.....+..+.+.++.++-++...|..++..+-..........+..+ .+...-+++.+++.-+++.++..|+.+.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7777777888899999999999999999999998876666655555543 6777788999999999999999999998
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhee
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhV 280 (307)
.+. - -....+.+..-+..+..+|.+.+..+|-+|...
T Consensus 167 ~~~--~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~a 203 (210)
T 4db6_A 167 SGG--N-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203 (210)
T ss_dssp TSC--H-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCC--c-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 752 1 223455556788899999999998888777544
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.61 E-value=0.28 Score=40.63 Aligned_cols=159 Identities=12% Similarity=0.114 Sum_probs=116.2
Q ss_pred HHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhccc--CcchhhhhhHHHH
Q 021777 74 ATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD--NKEVALHCGIMLR 151 (307)
Q Consensus 74 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLR 151 (307)
...+...+.+..|+..|..=+-+.|..+.....++....... .+.+.. ...+..|+.--+ ++++.-.+-..|.
T Consensus 47 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVID-AGALPALVQLLSSPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH----HHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 355667789999999998888899999999999887543221 222222 333444443323 4455555666666
Q ss_pred HHh-hhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeec
Q 021777 152 ECI-KFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRR 230 (307)
Q Consensus 152 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkR 230 (307)
... ..+...+.++....+..+.+.++.++-++...|..++..+...+......+...+ .+...-+++.+++.-+++
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~v~~ 198 (210)
T 4db6_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLEQLQSHENEKIQK 198 (210)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHHHGGGCSCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHHHHHhCCCHHHHH
Confidence 655 4556666777788888999999999999999999999999886676666665554 667788899999999999
Q ss_pred chhhhhHHhh
Q 021777 231 QSLKLLSEFL 240 (307)
Q Consensus 231 QSLKLLgelL 240 (307)
+++..|+.|-
T Consensus 199 ~a~~aL~~l~ 208 (210)
T 4db6_A 199 EAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.04 E-value=0.41 Score=46.08 Aligned_cols=199 Identities=10% Similarity=0.027 Sum_probs=141.4
Q ss_pred HhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhc--ccCcchhhhhhHHHHHHhh
Q 021777 78 CKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--YDNKEVALHCGIMLRECIK 155 (307)
Q Consensus 78 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~g--Y~~~dial~~G~mLRecik 155 (307)
...+.+..|+..+..-+-+.|+.++..+.++.+...... ..... ..++..|+.- -+++++-..+-..|..+..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP--DWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC--CHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC--cHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 445778888888888788899999999999987652111 11111 2333333332 2345555555566666554
Q ss_pred h-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhh
Q 021777 156 F-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLK 234 (307)
Q Consensus 156 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLK 234 (307)
. +.....++....+..+.+.+..++-++...|..++..+.+.+......++..+ +...+-.+|.+++.-++..++.
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHHHHHHcCCCHHHHHHHHH
Confidence 3 44556667777788888888888889999999999998877766666665543 6667788999999999999999
Q ss_pred hhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeec
Q 021777 235 LLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 235 LLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVAN 287 (307)
.||.+-. .+......++ +..-+..++.+|++.+..+|.+|...+--+...
T Consensus 364 aL~~l~~--~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 364 TISNITA--GNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHTT--SCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999875 3444444334 566788999999999989999888777655543
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.78 E-value=0.88 Score=38.59 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=115.4
Q ss_pred HHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhccc--CcchhhhhhHHHHHH
Q 021777 76 EVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD--NKEVALHCGIMLREC 153 (307)
Q Consensus 76 ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLRec 153 (307)
.+...+.+..|+..|..=+-+.|..+.....++...... ..+.+.. ..++..|+..-. ++++...+-..|...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch----HHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344567889999999888888999999999988543221 1133333 445555555433 445566666666666
Q ss_pred hh-hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecch
Q 021777 154 IK-FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQS 232 (307)
Q Consensus 154 ik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQS 232 (307)
.. .+.....+.....+..+.+.+..++-++...|..++..+...+......++..+ .+...-+++.+++.-+|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHTTTTCSSSHHHHTH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhCCCCHHHHHHH
Confidence 65 456666777778888999999999999999999999999877777666666554 66778889999999999999
Q ss_pred hhhhHHhh
Q 021777 233 LKLLSEFL 240 (307)
Q Consensus 233 LKLLgelL 240 (307)
...|+.|-
T Consensus 243 ~~~L~~l~ 250 (252)
T 4db8_A 243 QEALEKLQ 250 (252)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99998763
No 10
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.47 E-value=1.4 Score=40.60 Aligned_cols=208 Identities=12% Similarity=0.059 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhccccch--hhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHh-cCCC
Q 021777 16 EVVKATKVSLMALDIKTV--VEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVH-KLPI 92 (307)
Q Consensus 16 elVr~~~e~l~~l~~~~~--~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~-~l~~ 92 (307)
|-++.+++++..|.++.+ ...+...--.|+-...+..+..++.+ . .-++.+...+-+..|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-------~----dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-------M----DNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-------H----HHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-------h----hhHHHHHHcCCHHHHHHHHHcC
Confidence 446667777777766421 00000001122333344444444421 1 14556677788888999 8988
Q ss_pred CCchhhhhHHHHHHHhhccccCCccchhHHhhh---cHhHHHHHHhcccCcchhhhhhHHHHHHhh-hhHHHHHHhcchh
Q 021777 93 LGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN---HFELLDFLVVCYDNKEVALHCGIMLRECIK-FPSLARYILESAS 168 (307)
Q Consensus 93 L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~mLRecik-~e~la~~iL~~~~ 168 (307)
=+-+.|..++.+.+++...... .-+++.. -|-++..|-.+. ++++.-.+-.-|--+++ ++.....+...+.
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 8888999999999988753321 1223332 133333332221 22332222222333333 3444444555556
Q ss_pred HHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcC
Q 021777 169 FELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLE 242 (307)
Q Consensus 169 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLld 242 (307)
+--+.+.++.+++++-.+|...+..+...+......+.+.+ ++...-.||.+++--++.+++..|+.|+.+
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g---~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT---HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC---CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 66777778889999999999999999887777777776665 566777899999999999999999999976
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.03 E-value=0.64 Score=44.49 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=138.3
Q ss_pred HhhcHHHHHHhcC-CCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHHHh
Q 021777 78 CKEDVLILLVHKL-PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRECI 154 (307)
Q Consensus 78 ~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLReci 154 (307)
...+.+..|+..| ..-+-+.++.++..+.++.+....... ... ..++..|+.-- +++++...+-..|..+.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~---~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF---EQT---RPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH---HHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH---HHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3446788888888 667888999999999999886533222 111 34444444332 34555555555555555
Q ss_pred hh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCC-Cceeecch
Q 021777 155 KF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS-NYVTRRQS 232 (307)
Q Consensus 155 k~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~-NYVTkRQS 232 (307)
.+ +.....++....+..+.+.+..++-++...|..++..+.+.........+.. .....+-++|.++ +--+++.+
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~A 349 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH---QALPCLLSLLTQNLKKSIKKEA 349 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHHHSCCCHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh---hhHHHHHHHHcCCCcHHHHHHH
Confidence 43 3444566677778888888888888999999999999988666655555543 3566777888898 99999999
Q ss_pred hhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeec
Q 021777 233 LKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 233 LKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVAN 287 (307)
...|+.+.. .+.... .++-+..-+..++.+|.+....+|-+|...+.-++.+
T Consensus 350 ~~~L~nl~~--~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 350 CWTISNITA--GNKDQI-QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHT--SCHHHH-HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHH-HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999986 233333 3444456788899999998888888887766554443
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.77 E-value=0.4 Score=46.14 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=135.6
Q ss_pred hcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHHHhh-h
Q 021777 80 EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRECIK-F 156 (307)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRecik-~ 156 (307)
.+++..|+..+..=+-+.|.++...+.++...... ..+.+.. ..++..|+..- .++++-..+-..|..+.. .
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~----~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE----AIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH----HHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH----HHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 36778888888877778888888888887653221 2233332 23444444432 344555555556666554 4
Q ss_pred hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhh
Q 021777 157 PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLL 236 (307)
Q Consensus 157 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLL 236 (307)
+...+.++....+..+.++++.++.+|...|..++..+-......+..++..+ ++...-++|.++++-+++.++..|
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666777777788888999999999999999999988765555555555443 566677788899999999999999
Q ss_pred HHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeee
Q 021777 237 SEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285 (307)
Q Consensus 237 gelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFV 285 (307)
+.+...-....-..+|+-+..-+..+..+|.++...++..|...+.-++
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9998753210012345555678899999999988888877766654443
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.60 E-value=1.7 Score=44.37 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=118.1
Q ss_pred HHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhH------HHHHHhhhh
Q 021777 84 ILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGI------MLRECIKFP 157 (307)
Q Consensus 84 ~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~------mLRecik~e 157 (307)
..++..|..=+-..|+.++.+.+.+.+.... ..-|+++..|+..-.+++...-.|. +..++-..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~---------~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~- 162 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGEL---------QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI- 162 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT---------TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc---------cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 4455555555556677777777777765422 2348888888887776654333332 22222111
Q ss_pred HHHHHHhc---chhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhh
Q 021777 158 SLARYILE---SASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLK 234 (307)
Q Consensus 158 ~la~~iL~---~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLK 234 (307)
+.+--+. +..+-.+++.++.++-+|-.-|..++..++..+.. -+..+.+.++...-+++.+++--+|+++++
T Consensus 163 -~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~ 237 (852)
T 4fdd_A 163 -LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLFALAGDEEPEVRKNVCR 237 (852)
T ss_dssp -HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred -hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1110000 12344566667778888888888888776654332 244566778888888899999999999999
Q ss_pred hhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeee
Q 021777 235 LLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285 (307)
Q Consensus 235 LLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFV 285 (307)
.|+++.-. ....+..|+. .-+..++.+++|+...++.+|...+.-++
T Consensus 238 ~L~~l~~~--~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 238 ALVMLLEV--RMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHHHH--CHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh--CHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 99999863 4556666664 46777888999999999998876655444
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.37 E-value=0.35 Score=46.29 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=130.8
Q ss_pred HHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc---cCcchhhhhhHHHHHH
Q 021777 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY---DNKEVALHCGIMLREC 153 (307)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLRec 153 (307)
+...+.+..|+..|..=+-+.|..++..+.++...... ..+.+.. ..++..|+..- .++++.-.+-..|..+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~----~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK----CRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH----HHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh----hHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34446888899988887788888888888888653221 2233332 23444444433 3444544555555555
Q ss_pred hhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchh
Q 021777 154 IKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSL 233 (307)
Q Consensus 154 ik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSL 233 (307)
.++..-.......+.+..+.+.+..++=++..+|..++..+-......+...+.. ......-++|.+++--++..++
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT---TCHHHHHHHTTCSCHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc---CHHHHHHHHHcCCChhHHHHHH
Confidence 5443222223335566677777788888888999988888776555444444443 2456677889999988999999
Q ss_pred hhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCC-CcCceeehheeeeeeee
Q 021777 234 KLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS-SKNIQISAFHIFKVMIF 286 (307)
Q Consensus 234 KLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~-sknIq~EAFhVFKvFVA 286 (307)
..||.+.. .+ .-..+.+-+..-+..++.+|++. +..++-+|..+.--+.+
T Consensus 308 ~~L~nl~~--~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 308 RTVGNIVT--GD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHTT--SC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999986 22 33344455677899999999999 88999998766554443
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.30 E-value=6 Score=38.28 Aligned_cols=184 Identities=11% Similarity=0.170 Sum_probs=120.8
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHh--cccCcchhhhhhHHHHHHhh-hh
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVV--CYDNKEVALHCGIMLRECIK-FP 157 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~--gY~~~dial~~G~mLRecik-~e 157 (307)
+.++.|+..+..=+-+.+.+++....++.....+ ..+.+.. ..++..|+. +..++++...+-..|+.++. .+
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~----~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh----hHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 4566677777777777777777777666543211 1111111 122222222 23345555555566666554 45
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhH
Q 021777 158 SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLS 237 (307)
Q Consensus 158 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLg 237 (307)
.....++....+..+...+..++=+|-..|..++.-+-..+.......+..+ .+...-.++.++++-+++.+..-|+
T Consensus 326 ~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g---~i~~Lv~lL~~~~~~v~~~A~~aL~ 402 (529)
T 3tpo_A 326 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLVGVLSKADFKTQKAAAWAIT 402 (529)
T ss_dssp HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC---cHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5666777777777777888889989999999999888776666665655554 5666778999999999999999999
Q ss_pred HhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCce
Q 021777 238 EFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQ 274 (307)
Q Consensus 238 elLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq 274 (307)
.+......-. .+|+-+..-++.++.||+++...++
T Consensus 403 nl~~~~~~~~--~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 403 NYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHHHSCHHH--HHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHcCCCHHH--HHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 9887544332 3456666678888888887765554
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.96 E-value=5.2 Score=38.63 Aligned_cols=185 Identities=11% Similarity=0.167 Sum_probs=121.2
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHh--cccCcchhhhhhHHHHHHh-hhh
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVV--CYDNKEVALHCGIMLRECI-KFP 157 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~--gY~~~dial~~G~mLReci-k~e 157 (307)
+.+..|+..+..=+-|.+.+++....++...... ..+.+.. ..++..|+. +..++++-..+-..|..+. ..+
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~----~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----hHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 4566677777777777777777777766543211 1111111 122222222 2234444445555555543 356
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhH
Q 021777 158 SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLS 237 (307)
Q Consensus 158 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLg 237 (307)
..+..++....+..+...+..++=+|-..|..++..+...........++.+ .+...-.++.++++-+|+.+...|+
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g---~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC---CHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6677777777777788888899999999999999988776666666665554 5667778999999999999999999
Q ss_pred HhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCcee
Q 021777 238 EFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQI 275 (307)
Q Consensus 238 elLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~ 275 (307)
.+......-. .+|+-+..-++.++.||+++...|+.
T Consensus 384 Nl~~~~~~~~--~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 384 NYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHHHCCHHH--HHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHccCCHHH--HHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9887544332 34566667788888888877665543
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.83 E-value=1 Score=41.32 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=126.6
Q ss_pred HHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhccc---CcchhhhhhHHHHHH
Q 021777 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD---NKEVALHCGIMLREC 153 (307)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~---~~dial~~G~mLRec 153 (307)
+...+.+..|+..+..=+-+.|..+...+.++...... ..+.+.. ..++..|+.--. ++++...+-..|...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM----CRDYVLD-CNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH----HHHHHHH-TTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH----HHHHHHH-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34568899999999887888999999999888764321 1222222 234444433322 344444444444444
Q ss_pred hhhh-HHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecch
Q 021777 154 IKFP-SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQS 232 (307)
Q Consensus 154 ik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQS 232 (307)
.++. .-.+..+..+.+-.+.+.+..++=++..+|..++..+-............. ..+...-++|.+++--++..+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a 254 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA---GVCRRLVELLMHNDYKVVSPA 254 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT---TTHHHHHHHTTCSCHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc---CcHHHHHHHHCCCchhHHHHH
Confidence 4332 111111113455566666677777788888888888765444444333332 245566678899999999999
Q ss_pred hhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 233 LKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 233 LKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
+..||.+..... -..+.+-+..-+..++.+|++++..++.+|....--+.+
T Consensus 255 ~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 255 LRAVGNIVTGDD---IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTSCH---HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCh---HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999986432 234445556788999999999999999888776655543
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=91.23 E-value=4 Score=39.53 Aligned_cols=199 Identities=9% Similarity=0.095 Sum_probs=128.2
Q ss_pred HHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhc--HhHHHHHHhcccCcchhhhhhHHHHH
Q 021777 75 TEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENH--FELLDFLVVCYDNKEVALHCGIMLRE 152 (307)
Q Consensus 75 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~--peil~~Ll~gY~~~dial~~G~mLRe 152 (307)
+.+...+.+..|+..|..=+.+.+..+.....++...... ....+... -..+..|+.. .++++--.+...|..
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~----~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH----HHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 3456678888899988888888888888888888643211 11222221 1222233332 233333333344444
Q ss_pred -HhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcC-hHHHHHHHHhhHHHHHHHHHhhhcCCCceeec
Q 021777 153 -CIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKH-LTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRR 230 (307)
Q Consensus 153 -cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~H-k~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkR 230 (307)
|...+.....+.....+..+...+..+++++-..|..++.-+.... ..-+....+.+ .....-.||.+++-=+.+
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g---~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG---IIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHHHHGGGCSCHHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc---CHHHHHHHhcCCCHHHHH
Confidence 3445666667777778888889999999999999988888776532 22222223322 455566789998888888
Q ss_pred chhhhhHHhhc---CCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 231 QSLKLLSEFLL---EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 231 QSLKLLgelLl---dr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
.+|.-|..|+- .-.+.+-+..+|.+..-+..+-.|..+++..|+--|+.+.
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88888888763 2234455666676777777777888888888877777665
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=89.98 E-value=2.1 Score=40.20 Aligned_cols=190 Identities=14% Similarity=0.079 Sum_probs=128.5
Q ss_pred HHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHh--cccCcchhhhhhHHHHH
Q 021777 75 TEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVV--CYDNKEVALHCGIMLRE 152 (307)
Q Consensus 75 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~--gY~~~dial~~G~mLRe 152 (307)
..+...+.+..|+..+..=+-+.++.+...+.++-+...... . ...++..|+. .-+++++-..+-..|..
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G------MEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--C------CHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--H------HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455667888899988887788889999999998887643211 1 1234444433 23566776677777777
Q ss_pred Hhhh-hHHHHHHhcchhHHHhhhhccC--CCchhhhchHHHHHHHhhcChHH---HHHHHHhhHHHHHHHHHhhhcCCCc
Q 021777 153 CIKF-PSLARYILESASFELFFKFVEL--PTFDVASDAFSTFKDLLTKHLTV---VSEYLTAHYDEFFDLYEKLLTSSNY 226 (307)
Q Consensus 153 cik~-e~la~~iL~~~~f~~fF~yv~~--~~FdiasDAf~Tfkellt~Hk~l---vaefl~~Nyd~Ff~~yn~Ll~s~NY 226 (307)
+..+ +.....+.....+..+.+.+.. .+-++...|..++.-+-..++.. .......+ .+...-++|.+++-
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~---~i~~L~~lL~~~~~ 369 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY---GLPVVVKLLHPPSH 369 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT---CHHHHHHTTSTTCC
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC---ChhHHHHHhccccc
Confidence 6664 4566677777777777777754 33678888888888886655431 22333333 25566788888874
Q ss_pred -eeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhe
Q 021777 227 -VTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFH 279 (307)
Q Consensus 227 -VTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFh 279 (307)
-+++.++..|+.+-.+..|. ..+-+..-+..+..+|++.+..+|-||-.
T Consensus 370 ~~v~~~a~~~l~nl~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 419 (529)
T 1jdh_A 370 WPLIKATVGLIRNLALCPANH----APLREQGAIPRLVQLLVRAHQDTQRRTSM 419 (529)
T ss_dssp HHHHHHHHHHHHHHTTSGGGH----HHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHhcChhhh----HHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence 78899999999999877765 34446677899999999988889888764
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=89.36 E-value=1.4 Score=41.37 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=119.1
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhc---HhHHHHHHhcccCcchhhhhhHHHHHHhhh-
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENH---FELLDFLVVCYDNKEVALHCGIMLRECIKF- 156 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~---peil~~Ll~gY~~~dial~~G~mLRecik~- 156 (307)
+.+..|+..+..=+-+.|..++.+..++-....+ ..+.+... |.++..|-..-+++++-..+-..|+....+
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~----~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK----NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH----HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC
Confidence 5677788888877888888888888888654321 22333331 344444433333456555555556555443
Q ss_pred ---hHHHHHHhcchhHHHhhhhccCCCc-hhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc-
Q 021777 157 ---PSLARYILESASFELFFKFVELPTF-DVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ- 231 (307)
Q Consensus 157 ---e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ- 231 (307)
+.....+.....+..+.+.++.+.. ++...|..++..+-. +......+...+ ++...-+++.++++-+|+.
T Consensus 342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a 417 (529)
T 1jdh_A 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQG---AIPRLVQLLVRAHQDTQRRT 417 (529)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTT---HHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcC---CHHHHHHHHHHHhHHHHHHH
Confidence 2344456666667777888887774 888888888888765 444334555443 4555566777777777764
Q ss_pred ---------------------hhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeee
Q 021777 232 ---------------------SLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVM 284 (307)
Q Consensus 232 ---------------------SLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvF 284 (307)
++.-|+.+..+..|. ..+.+..-+..+..+|.|...+||..|-..+.-+
T Consensus 418 ~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~----~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR----IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp --------CBTTBCHHHHHHHHHHHHHHHTTSHHHH----HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hcccCchhhhccccHHHHHHHHHHHHHHHhcCchHH----HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 445555565543332 2333456678899999999999998887654433
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=88.94 E-value=10 Score=38.93 Aligned_cols=182 Identities=13% Similarity=0.019 Sum_probs=126.8
Q ss_pred hhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc---cCcchhhhhhHHHHHHhh
Q 021777 79 KEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY---DNKEVALHCGIMLRECIK 155 (307)
Q Consensus 79 ~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLRecik 155 (307)
..+.+..|+..|..=+-+.|..++....++-.... ...-+...++++..|++.- +++++-..+-..|+.+.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-----HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-----hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 35677777777766677888888888887765321 1233444577777766543 477788888888999888
Q ss_pred hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhh
Q 021777 156 FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKL 235 (307)
Q Consensus 156 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKL 235 (307)
++.-...+.....+..+.+.++.++=++-..|..++..+-..+......+...+ .+..+-++|.++|--.++.++..
T Consensus 223 ~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 223 HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDC 299 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHHHGGGCCCHHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHHHHHhcCCHHHHHHHHHH
Confidence 777767777778888899999999888999999999988765444333333333 45567788888887667777777
Q ss_pred hHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCc
Q 021777 236 LSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSK 271 (307)
Q Consensus 236 LgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sk 271 (307)
|+.+-. .|-......+. ...+..++.+|++.+.
T Consensus 300 L~~La~--~~~e~~~~i~~-~~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 300 LQILAY--GNQESKLIILA-SGGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHT--TCHHHHHHHHT-TTHHHHHHHHHTTCCC
T ss_pred HHHHhc--CChHHHHHHHH-cCCHHHHHHHHhcCCH
Confidence 775554 45444444444 3667778888887653
No 22
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=88.69 E-value=1.1 Score=45.91 Aligned_cols=188 Identities=9% Similarity=0.128 Sum_probs=116.8
Q ss_pred HHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhccc--CcchhhhhhHHHHHHhhhhHHHHH
Q 021777 85 LLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD--NKEVALHCGIMLRECIKFPSLARY 162 (307)
Q Consensus 85 ~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLRecik~e~la~~ 162 (307)
.++..+..-+-+.|.-++..+.+.+++.-. ..|. ..+..|-..|+.+-. ++.+-...+..+.+.++++...
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~----~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-- 124 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPN----GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-- 124 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCH----HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc--
Confidence 344555666788888888888888764221 1111 113444555555443 3455666666666666654211
Q ss_pred HhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHH-HHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhc
Q 021777 163 ILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVS-EYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (307)
Q Consensus 163 iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lva-efl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl 241 (307)
-..+.+-.+++.++.++..+---|+.++..+......... +.+....+.++..+-+++.+++--.|..+++-|+.++.
T Consensus 125 -~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 125 -NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp -TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 0123344566777777777777777777777653332211 12222356677778888999999999999999998885
Q ss_pred CCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeee
Q 021777 242 EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVM 284 (307)
Q Consensus 242 dr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvF 284 (307)
... ..+..++ ++-+..+..++.|++..++-.|+..+--+
T Consensus 204 ~~~--~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 204 SRT--QALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp TTC--HHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 433 2222222 46778888889999888888888776433
No 23
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=88.22 E-value=5.3 Score=38.57 Aligned_cols=199 Identities=9% Similarity=0.078 Sum_probs=129.4
Q ss_pred HHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhc--ccCcchhhhhhHHHHH
Q 021777 75 TEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--YDNKEVALHCGIMLRE 152 (307)
Q Consensus 75 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~g--Y~~~dial~~G~mLRe 152 (307)
+.+...+.+..|+..|..=+-+.+..+.....++...... ....+.. ..++..|+.- -.++++--.+-..|..
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~----~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH----HHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3456678888899888888888888888888877643211 1111111 1122222111 1223333333333443
Q ss_pred H-hhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcCh-HHHHHHHHhhHHHHHHHHHhhhcCCCceeec
Q 021777 153 C-IKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHL-TVVSEYLTAHYDEFFDLYEKLLTSSNYVTRR 230 (307)
Q Consensus 153 c-ik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk-~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkR 230 (307)
+ ...+.....+.....+..+.+.+..+++++-..|..++.-+..... +.+......+ .+..+-.||.+++-=+.+
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g---~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG---IIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT---CHHHHHHGGGCSCHHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC---CHHHHHHHhcCCCHHHHH
Confidence 3 3455666677777788888999999999999999888887765332 2233333333 455667789998888888
Q ss_pred chhhhhHHhhc---CCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 231 QSLKLLSEFLL---EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 231 QSLKLLgelLl---dr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
.+|.-|..|+- .-...+-+.++|.+..-++.+=.|..+++..|+=-|+.+.
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89998888773 2234555667787778888888888888888888888776
No 24
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=88.15 E-value=15 Score=37.94 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=103.0
Q ss_pred HHHHhhhhhcCCCCCCC-------CHHHHHHHHHHHHhh-cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchh
Q 021777 49 NFVTMRCMLSGDGEVEP-------NADQVLQLATEVCKE-DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120 (307)
Q Consensus 49 ~L~~mK~iL~G~~e~ep-------~~e~~~qLa~ei~~~-dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v 120 (307)
.|.-+-.++.++++.+. ..+...+++.++.+. +-+..|+..|..=+|..|-.+.++...++..+... +=
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~---~Q 158 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ---VQ 158 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---HH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---HH
Confidence 45555566666554221 123345677777554 88999999999999999999999999999765432 34
Q ss_pred HHhhhcHhHHHHHHhcccCc-chhhhhhH-HHHHHhh-hhHHHHHHhcchhHHHhhhhccCCCc----hhhhchHHHHHH
Q 021777 121 QFIENHFELLDFLVVCYDNK-EVALHCGI-MLRECIK-FPSLARYILESASFELFFKFVELPTF----DVASDAFSTFKD 193 (307)
Q Consensus 121 ~Yl~~~peil~~Ll~gY~~~-dial~~G~-mLRecik-~e~la~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfke 193 (307)
+++...|.-+..|+.--+++ |+.=+-+. +|-+..+ +..+-+++=.-.-|..+|+-++...- .|..|++..+..
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 67888888888888876654 22111111 1112222 33333444344568888888776665 788899888888
Q ss_pred HhhcChHHHHHHHHhhHHHHHHHHHhhhcCC
Q 021777 194 LLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS 224 (307)
Q Consensus 194 llt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~ 224 (307)
|+..+..-=.-|.+.+ ++...-.|+..+
T Consensus 239 LLr~N~sNQ~~FrEt~---~i~~L~~LL~~~ 266 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGS---YIQRMKPWFEVG 266 (651)
T ss_dssp HHTTCHHHHHHHHHTT---CGGGGGGGGCCC
T ss_pred HHhcCHHHHHHHHHcC---CHHHHHHHhCCC
Confidence 8876544333333333 222333555543
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.55 E-value=11 Score=39.67 Aligned_cols=196 Identities=9% Similarity=0.064 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhc---HhHHHHHHhcccCcchhhhh
Q 021777 70 VLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENH---FELLDFLVVCYDNKEVALHC 146 (307)
Q Consensus 70 ~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~---peil~~Ll~gY~~~dial~~ 146 (307)
+..-++.+...+.++.|+..+..=+-+.|+.++.+..++-... ...+.+..+ |-++..|-.|.... --.-+
T Consensus 484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-----~~r~~Vv~~Gaip~Lv~LL~s~~~~~-k~~Aa 557 (810)
T 3now_A 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALLRMALEGTEKG-KRHAT 557 (810)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----HHHHHHHHCCCHHHHHHHHccCCHHH-HHHHH
Confidence 3333478889999999999999888899999999999996432 134555553 55555555553210 01111
Q ss_pred hHHHHHHhhhhHHHHHHhc----chhHHHhhhhccCCCc-hhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhh
Q 021777 147 GIMLRECIKFPSLARYILE----SASFELFFKFVELPTF-DVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLL 221 (307)
Q Consensus 147 G~mLRecik~e~la~~iL~----~~~f~~fF~yv~~~~F-diasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll 221 (307)
..+-+-|+-.++ ..++. .+.+-.+.+.+..+.- ....+|...+.-|.+.........+.. ..+...-.||
T Consensus 558 ~AL~nL~~~~~p--~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL 632 (810)
T 3now_A 558 QALARIGITINP--EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYL 632 (810)
T ss_dssp HHHHHHHHHSCH--HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHH
T ss_pred HHHHHHhcCCCh--hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHH
Confidence 112222221110 00110 0123334444443322 223466677776666544444444443 3567788899
Q ss_pred cCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhe
Q 021777 222 TSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFH 279 (307)
Q Consensus 222 ~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFh 279 (307)
.|+|--.++.++.+|+.|.... ....+++.+..-++.+..||.+.+..+|-+|--
T Consensus 633 ~s~~~~Vq~~A~~~L~NLa~~~---~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 633 MEDHLYLTRAAAQCLCNLVMSE---DVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HSCCTTHHHHHHHHHHHHTTSH---HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCh---HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999998744 567788866789999999999999999988743
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.42 E-value=3.7 Score=35.22 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=110.4
Q ss_pred HHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhccc-Ccchhh------hhhHHHHHHhhhhH
Q 021777 86 LVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD-NKEVAL------HCGIMLRECIKFPS 158 (307)
Q Consensus 86 Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~-~~dial------~~G~mLRecik~e~ 158 (307)
+...+..=+|..|+.+..-+..++....+ ...-+ ..+++..|...-. +++... ..|.+.+.. +. .
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~~~----~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~~-~ 91 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPK--LENGE----YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-AK-R 91 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCCCC----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-GG-G
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCC--CCCCC----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-hh-h
Confidence 33445567899999999888888765221 11111 2466666666653 444322 222222211 10 0
Q ss_pred HHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHH
Q 021777 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE 238 (307)
Q Consensus 159 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLge 238 (307)
+..++ ...+-.+++.+..++=.|-..|..++..+.... +++.+.......+.+.|.-+|.+++.+|+.
T Consensus 92 ~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 92 FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 11100 112334555566677778888888888776532 467788888888999999999999999999
Q ss_pred hhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeee
Q 021777 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFK 282 (307)
Q Consensus 239 lLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFK 282 (307)
++..-.....+..|+ +.-+..++.+|.|+...++-.|+-.+-
T Consensus 160 ~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 160 ALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp HHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 886533333455666 467888999999999988877776543
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=84.02 E-value=13 Score=33.79 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=84.2
Q ss_pred cHhHHHHHHhcccCc--chhhh--hhHHHHHHhh---hhHHHHHHhcchhHHHhhhhccCC--CchhhhchHHHHHHHhh
Q 021777 126 HFELLDFLVVCYDNK--EVALH--CGIMLRECIK---FPSLARYILESASFELFFKFVELP--TFDVASDAFSTFKDLLT 196 (307)
Q Consensus 126 ~peil~~Ll~gY~~~--dial~--~G~mLRecik---~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~Tfkellt 196 (307)
-|+++..|+....++ +...- +-..|+...+ .+.+..++ .+.+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 478888888776655 32221 1122222221 11111100 12233444555555 56666667766666542
Q ss_pred cChHHHHHHHHhhH-----HH-HHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCC
Q 021777 197 KHLTVVSEYLTAHY-----DE-FFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSS 270 (307)
Q Consensus 197 ~Hk~lvaefl~~Ny-----d~-Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~s 270 (307)
|+..+. .. +.....+++.+++--.|+++++.|+++..... ..+..|+.. +-+..++..++|..
T Consensus 204 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~-~l~~~~~~~~~~~~ 272 (462)
T 1ibr_B 204 --------FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP-ALFAITIEAMKSDI 272 (462)
T ss_dssp --------TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT-THHHHHHHHHHCSS
T ss_pred --------HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHcCCc
Confidence 111111 11 23444467788888889999999999886432 333344442 45667778889999
Q ss_pred cCceeehheeeeeeeec
Q 021777 271 KNIQISAFHIFKVMIFH 287 (307)
Q Consensus 271 knIq~EAFhVFKvFVAN 287 (307)
..++..|+..+.-++..
T Consensus 273 ~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 273 DEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99988888877666544
No 28
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=83.60 E-value=20 Score=35.67 Aligned_cols=184 Identities=10% Similarity=0.146 Sum_probs=111.0
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccC--cchhhhhhHHHHHHhhhhH-
Q 021777 82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN--KEVALHCGIMLRECIKFPS- 158 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~--~dial~~G~mLRecik~e~- 158 (307)
++..|...+..-+.+.|+.+..++..+.....+. ...|+. ++++..++.+-++ +++...+-..+..+++...
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566668888999998888877654321 122332 1667766665543 4556666666665555431
Q ss_pred -----------------HHHHHhcchhHHHhhhhccC-------CCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHH
Q 021777 159 -----------------LARYILESASFELFFKFVEL-------PTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFF 214 (307)
Q Consensus 159 -----------------la~~iL~~~~f~~fF~yv~~-------~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff 214 (307)
..+-.+ .+.+..+++.+.. ..+.+...|..++..+-.... ..-.+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------HhHHHHHH
Confidence 111111 2233344444432 345666666666665543211 12244567
Q ss_pred HHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 215 DLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 215 ~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
....+++.+++.-.|..++..||.+.-.-. ...+..|+. .-+..+...|+|++..++-.|...+
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777788899999999999999999984321 245566664 4567778888999888887765543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=83.23 E-value=30 Score=34.08 Aligned_cols=182 Identities=14% Similarity=0.024 Sum_probs=120.6
Q ss_pred HhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc---cCcchhhhhhHHHHHHh
Q 021777 78 CKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY---DNKEVALHCGIMLRECI 154 (307)
Q Consensus 78 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY---~~~dial~~G~mLReci 154 (307)
+..+.+..|+..|..=+-+.|..++....++-.... ...-+...+.++..|++.- +++++-..+-..|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-----HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-----hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 345566677777766677888888888888765432 2233444455555555542 35677777778888888
Q ss_pred hhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhh
Q 021777 155 KFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLK 234 (307)
Q Consensus 155 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLK 234 (307)
+++.....+.....+-.+.+.++.++-++-..|..++..+...+......+.... .....-++|.++|--.+..++.
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHHHGGGCCCHHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHHHHHCcCCHHHHHHHHH
Confidence 8887777777888888899999999888999999999998765544333443333 4556677888887645555566
Q ss_pred hhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCC
Q 021777 235 LLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSS 270 (307)
Q Consensus 235 LLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~s 270 (307)
.|+.+-. .|-...... .+..-+..++.+|++.+
T Consensus 163 ~L~~La~--~~~~~~~~i-~~~g~v~~Lv~lL~~~~ 195 (644)
T 2z6h_A 163 CLQILAY--GNQESKLII-LASGGPQALVNIMRTYT 195 (644)
T ss_dssp HHHHHHT--TCHHHHHHH-HHTTHHHHHHHHHTTCC
T ss_pred HHHHHHh--cCcHHHHHH-HHcCChHHHHHHHHcCC
Confidence 7777665 222222222 23355777777887764
No 30
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.04 E-value=9.8 Score=35.66 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHHhhcHHHHHHhcC-CCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHH---h-cccCc--chhhhhhH
Q 021777 76 EVCKEDVLILLVHKL-PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLV---V-CYDNK--EVALHCGI 148 (307)
Q Consensus 76 ei~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll---~-gY~~~--dial~~G~ 148 (307)
.+...+.+..|+..| ..=+-+.++.++....++-....+.+. -+......+..|+ . +.+.+ ++.-.+..
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~----~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH----HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHH
Confidence 345567777777764 334667777776655555432211111 1111222233322 2 22222 35556667
Q ss_pred HHHHHhh----hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCC
Q 021777 149 MLRECIK----FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS 224 (307)
Q Consensus 149 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~ 224 (307)
.||-... .+.-...+.+...+-.+.+.+..+++++-..|-.++..+-.....-.......+ .+...-+||.++
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~i~~Lv~LL~s~ 317 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSMLKNLIHSK 317 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---HHHHHHTTTTCS
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC---CHHHHHHHHhCC
Confidence 7777664 566667788888899999999999999999999999998766666666665554 456677899999
Q ss_pred CceeecchhhhhHHhhcCCCCH
Q 021777 225 NYVTRRQSLKLLSEFLLEPPNS 246 (307)
Q Consensus 225 NYVTkRQSLKLLgelLldr~N~ 246 (307)
+--+|+.+..-|..|..++.+.
T Consensus 318 ~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 318 HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999887654
No 31
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.46 E-value=14 Score=36.90 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=114.5
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcc--cCcchhhhhhHHHHHHhhhhHH
Q 021777 82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCY--DNKEVALHCGIMLRECIKFPSL 159 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY--~~~dial~~G~mLRecik~e~l 159 (307)
++..+...+..-+.+.|+.+..++..+....... ...|+. ++++..++.+. +++++...+-..+..+++++.-
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG---CHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH---HHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 5666666677778899999999999888754321 123432 36777777654 3445666665566655554310
Q ss_pred ----------------------HHHHhcchhHHHhhhhcc-------CCCchhhhchHHHHHHHhhcChHHHHHHHHhhH
Q 021777 160 ----------------------ARYILESASFELFFKFVE-------LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHY 210 (307)
Q Consensus 160 ----------------------a~~iL~~~~f~~fF~yv~-------~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Ny 210 (307)
.+-.+ .+.+-.+++.+. ..++.+-..|...+..+-..-.+ .-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~ 364 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIV 364 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------GGH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------hhH
Confidence 00000 111222333332 23444444444444444221111 124
Q ss_pred HHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeec
Q 021777 211 DEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 211 d~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVAN 287 (307)
+.++......+.+++.-.|..++..||.+...-. -..+..|+ +.-+..+...|.|++..++..|...+--|+..
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5566667778889999999999999999985432 13344565 45788889999999999998888877655543
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=80.40 E-value=36 Score=34.90 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=84.9
Q ss_pred HhHHHHHHhcccC---cchhhhhhHHHHHHhhhhH---HHHHHhcchhHHHhhhhcc-C--CCchhhhchHHHHHHHhhc
Q 021777 127 FELLDFLVVCYDN---KEVALHCGIMLRECIKFPS---LARYILESASFELFFKFVE-L--PTFDVASDAFSTFKDLLTK 197 (307)
Q Consensus 127 peil~~Ll~gY~~---~dial~~G~mLRecik~e~---la~~iL~~~~f~~fF~yv~-~--~~FdiasDAf~Tfkellt~ 197 (307)
|.++..++.+|.. +..--..|.+++++-..+. ...-++ ...+...+..++ . ..=|+..++|.-+..++..
T Consensus 725 ~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 725 PQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 6777788888765 3333445666665433321 111111 111222222221 1 2347888888888888887
Q ss_pred ChHHHHHHHHhh-HHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcC--hhhHHHHHHHhcCCCcCce
Q 021777 198 HLTVVSEYLTAH-YDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILE--VRFLKVMMTLLKDSSKNIQ 274 (307)
Q Consensus 198 Hk~lvaefl~~N-yd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~--~~NLKl~M~LL~d~sknIq 274 (307)
+...+-. ... ++.++...-..+.+++.-+.+.+++.|.+++..-........++.. +.-+..+|..+.+....-.
T Consensus 804 ~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 881 (963)
T 2x19_B 804 KPDLFLC--ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSL 881 (963)
T ss_dssp CGGGGGC--TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGG
T ss_pred CcHHHcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhH
Confidence 7765421 222 6778888888888999999999999999999654322344444431 2233445556666554444
Q ss_pred ee
Q 021777 275 IS 276 (307)
Q Consensus 275 ~E 276 (307)
++
T Consensus 882 ~~ 883 (963)
T 2x19_B 882 MD 883 (963)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=79.57 E-value=47 Score=33.98 Aligned_cols=197 Identities=13% Similarity=0.011 Sum_probs=108.1
Q ss_pred HHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcc--hhhhhhHHHHH-
Q 021777 76 EVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKE--VALHCGIMLRE- 152 (307)
Q Consensus 76 ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~d--ial~~G~mLRe- 152 (307)
++.+.+.+..|+..|..=+-+.|+.+.....++....... ...+ ....++..|+..-..++ +--.+-..|+.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~----~~~v-~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA----KMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH----HHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh----HHHH-HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556678888888888777778888888888876543221 1111 12234444444333322 22222222222
Q ss_pred HhhhhHHHHHHhcchhHHHhhhhccCCCchhhh-chHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc
Q 021777 153 CIKFPSLARYILESASFELFFKFVELPTFDVAS-DAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ 231 (307)
Q Consensus 153 cik~e~la~~iL~~~~f~~fF~yv~~~~Fdias-DAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ 231 (307)
|..++.....+.....+..+.+.+..++-+... .|...+..+ ..+.......+..+ .....-.++.+++--+++.
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L-s~~~~~~~~i~~~g---~l~~Ll~lL~~~~~~~~~~ 379 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAG---GMQALGLHLTDPSQRLVQN 379 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTSTTHHHHHHHTT---HHHHHGGGTTCSCHHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcChHHHHHHHHhc---hHHHHHHHHcCCchHHHHH
Confidence 223344444555555566666666655433221 112222222 11222222222222 3345556778888778888
Q ss_pred hhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeec
Q 021777 232 SLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 232 SLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVAN 287 (307)
++..|+.|.-..... .....-+..++.+|++++..++..|..++.-+..+
T Consensus 380 a~~~L~~L~~~~~~~------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHTTCTTC------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhccchhh------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 888888887554332 23456788888889988888888887776655444
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=78.90 E-value=20 Score=37.86 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccch
Q 021777 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCC 119 (307)
Q Consensus 40 ~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~ 119 (307)
...+++.+..|..+- |+ ++ ..+.+.+.+.++.|+..|..=+.+.|+.++.-.+++.+.... ....
T Consensus 509 ~~vqe~Aa~aL~NLA----~d------~~----~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~~ 573 (810)
T 3now_A 509 HNSQELIARVLNAVC----GL------KE----LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVSF 573 (810)
T ss_dssp HHHHHHHHHHHHHHH----TS------HH----HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHT
T ss_pred HHHHHHHHHHHHHHc----CC------HH----HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhhh
Confidence 456677777776662 33 22 345577788899999888887889999999998888764211 0000
Q ss_pred hHHhhhcHhHHHHHHhcccCc-chh--hhhhHHHHHHhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHh
Q 021777 120 VQFIENHFELLDFLVVCYDNK-EVA--LHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLL 195 (307)
Q Consensus 120 v~Yl~~~peil~~Ll~gY~~~-dia--l~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkell 195 (307)
..+ .-.+++.-|+.--... +.. ..+=.-|+-+..+ |.....+.+...+-.+.+++..++-.|-.-|..++..+.
T Consensus 574 ~~~--~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 574 SGQ--RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTH--HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred cch--hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 001 0012333333322211 111 1122234444444 666777777777888888888899999999999999886
Q ss_pred hcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcC-hhhHHHHHHHhcCCCcCce
Q 021777 196 TKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILE-VRFLKVMMTLLKDSSKNIQ 274 (307)
Q Consensus 196 t~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~-~~NLKl~M~LL~d~sknIq 274 (307)
+ ++.....|.. +. .-....-+|+.+++.-+|+.+.-.|+-|-.. +-.. .++|-+ ..-+..+..||++.+-.+|
T Consensus 652 ~-~~~~~~~~v~-~~-g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~--s~~~-~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 652 M-SEDVIKMFEG-NN-DRVKFLALLCEDEDEETATACAGALAIITSV--SVKC-CEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp T-SHHHHHHHHS-SS-SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--CHHH-HHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred C-ChHHHHHHHh-cc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CHHH-HHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 6 6676667763 21 2345566899999999999999999998862 2222 334444 7888999999999999999
Q ss_pred eehhee
Q 021777 275 ISAFHI 280 (307)
Q Consensus 275 ~EAFhV 280 (307)
.+|--.
T Consensus 726 ~~A~~a 731 (810)
T 3now_A 726 HRGIVI 731 (810)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888643
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=78.23 E-value=4.1 Score=37.40 Aligned_cols=181 Identities=10% Similarity=0.160 Sum_probs=114.2
Q ss_pred chhhhhHHHHHHHhhccccCCccchhHHhhh--cHhHHHHHHhcccCcchhhhhhHHHHHHhhh-hHHHHHHhcchhHHH
Q 021777 95 WEARKDLVHCWSILLKQKVDSTYCCVQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKF-PSLARYILESASFEL 171 (307)
Q Consensus 95 fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~--~peil~~Ll~gY~~~dial~~G~mLRecik~-e~la~~iL~~~~f~~ 171 (307)
-|.|..+..++..+.... +. ..+.... =|-++.-|+. -.++++--.+-..|..+... +.....++....+..
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dn---a~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~ 128 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DN---AADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HH---HHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hh---HHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 356777778877776521 10 0111100 1222220111 12344444444445555543 445556666666666
Q ss_pred hhhhccC-CCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHH
Q 021777 172 FFKFVEL-PTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (307)
Q Consensus 172 fF~yv~~-~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (307)
+.+.+.. ++=++...|..++-.+...++.....|...+ .+.-.-++|.+++.-+++.+.-+|+.+... +- -..
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g---gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~--~~-~~~ 202 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD---GFSVLMRAMQQQVQKLKVKSAFLLQNLLVG--HP-EHK 202 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CG-GGH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--Ch-HHH
Confidence 6666664 4667888888888877666666666777755 566777899999999999999999999875 11 124
Q ss_pred HHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 251 RYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 251 rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
+++-+..-++.++.||++++..+|-.|-..+--++.
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 456667889999999999988888777665544443
No 36
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.00 E-value=5.5 Score=42.39 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=92.4
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcc--hhhhhhHHHHHHhhhhHH
Q 021777 82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKE--VALHCGIMLRECIKFPSL 159 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~d--ial~~G~mLRecik~e~l 159 (307)
++..|+..+..=+.+.|+-+....+.+...- +. . ..+.|+..|+.+..+++ +-..++.-|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4455666677778889999988888877532 11 2 23678888888765443 333344444444322100
Q ss_pred -------HHHHhcchhHHHhhhhcc-CCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc
Q 021777 160 -------ARYILESASFELFFKFVE-LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ 231 (307)
Q Consensus 160 -------a~~iL~~~~f~~fF~yv~-~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ 231 (307)
.. -...+.+-.+++.++ .++.++...|+.++.+++....+.+. ..++.....+-+++.+++--+|++
T Consensus 120 ~~~~~~~~~-~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~----~~~~~ll~~l~~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAA-NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV----NFHPSILTCLLPQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHH-HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT----TTHHHHHHHHGGGGGCSSHHHHHH
T ss_pred cccccchHH-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHHHHHHHHcCCcHHHHHH
Confidence 00 001233445666777 58899999999999998864333222 234667777777788888888888
Q ss_pred hhhhhHHhhcCC
Q 021777 232 SLKLLSEFLLEP 243 (307)
Q Consensus 232 SLKLLgelLldr 243 (307)
+++-||.+....
T Consensus 195 a~~al~~l~~~~ 206 (1230)
T 1u6g_C 195 TIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHHhc
Confidence 888888877543
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=77.90 E-value=35 Score=33.45 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=98.7
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhH----HHHHHhcccCcchhhhhhHHHHH--Hhh
Q 021777 82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFEL----LDFLVVCYDNKEVALHCGIMLRE--CIK 155 (307)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~pei----l~~Ll~gY~~~dial~~G~mLRe--cik 155 (307)
++..++..++.=+++.||-+..-...+.+. +||. +..+.+...+++-.. -|.-||- ++.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--------------~~e~~~l~~n~l~kdL~~~n~~i-r~~AL~~L~~i~ 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------------QPDMAIMAVNSFVKDCEDPNPLI-RALAVRTMGCIR 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--------------SHHHHHTTHHHHGGGSSSSSHHH-HHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--------------CchHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHcCC
Confidence 455566677777888888777666655442 2333 233334444443221 2222332 122
Q ss_pred hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhh
Q 021777 156 FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKL 235 (307)
Q Consensus 156 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKL 235 (307)
.+.+++.+. -.+.+.+..++-.|-.-|...+-.+....+.++.+ +.++....++|.++|...++.++..
T Consensus 115 ~~~~~~~l~-----~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~~lL~d~d~~V~~~A~~a 183 (591)
T 2vgl_B 115 VDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLRDLIADSNPMVVANAVAA 183 (591)
T ss_dssp SGGGHHHHH-----HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHTTSCSCHHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHHHHhCCCChhHHHHHHHH
Confidence 333333332 11233444556666566666655555544554432 3677888889999999999999999
Q ss_pred hHHhhcCCCCH-------HHHHHHh---c--------------------Ch----hhHHHHHHHhcCCCcCceeehheee
Q 021777 236 LSEFLLEPPNS-------HIMKRYI---L--------------------EV----RFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 236 LgelLldr~N~-------~vM~rYi---s--------------------~~----~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
|+++--+.... ....+-+ . ++ +-+..+..+|++.+..|.+||-..+
T Consensus 184 L~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 184 LSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVL 263 (591)
T ss_dssp HHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred HHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 99987765421 1111111 1 11 2344455567888899999998765
Q ss_pred ee
Q 021777 282 KV 283 (307)
Q Consensus 282 Kv 283 (307)
--
T Consensus 264 ~~ 265 (591)
T 2vgl_B 264 MK 265 (591)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=77.45 E-value=57 Score=32.03 Aligned_cols=195 Identities=14% Similarity=0.002 Sum_probs=115.1
Q ss_pred HHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch--hhhhhHHHHH
Q 021777 75 TEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV--ALHCGIMLRE 152 (307)
Q Consensus 75 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di--al~~G~mLRe 152 (307)
..+...+.+..|+..|..=+-+.|..++....++...... ....+ ....++..|+....+++. -..+-..|+.
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~----~~~~v-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG----AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT----HHHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch----hHHHH-HHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 3456678899999999888888899999888888765321 11112 123455555554444332 1122223433
Q ss_pred Hh-hhhHHHHHHhcchhHHHhhhhccCCCchhh-hchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeec
Q 021777 153 CI-KFPSLARYILESASFELFFKFVELPTFDVA-SDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRR 230 (307)
Q Consensus 153 ci-k~e~la~~iL~~~~f~~fF~yv~~~~Fdia-sDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkR 230 (307)
.. ..+.....+.....+..+.+.++.++-+-. -.|...+..+ ..+.......+..+ .....-+++.+++--.++
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL-s~~~~~~~~l~~~g---~l~~L~~ll~~~~~~~~~ 242 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAG---GMQALGLHLTDPSQRLVQ 242 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-TTCTTHHHHHHHTT---HHHHHHTTTTCSCHHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH-hcCcccHHHHHHCC---CHHHHHHHHhcCCHHHHH
Confidence 33 345555555555666666666665543221 1122223222 23444444444443 455666788888888899
Q ss_pred chhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeee
Q 021777 231 QSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVM 284 (307)
Q Consensus 231 QSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvF 284 (307)
.++..|+.+--+.... .....-+..++.+|++.+..++-.|-.++.-.
T Consensus 243 ~a~~~L~nL~~~~~~~------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp HHHHHHHHHGGGCTTC------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhh------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999886544332 22235678888888888888887777666433
No 39
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=76.54 E-value=23 Score=34.49 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=107.7
Q ss_pred HHHhhcHHHHHHhc-CCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHH---h-cccCc--chhhhhhH
Q 021777 76 EVCKEDVLILLVHK-LPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLV---V-CYDNK--EVALHCGI 148 (307)
Q Consensus 76 ei~~~dll~~Li~~-l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll---~-gY~~~--dial~~G~ 148 (307)
.+...+.+..|+.. +..=+-+.++.+.....++-....+.+. -+......+..|+ . +.+.+ ++.-.+..
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 44556778888886 4444667777666555555432111111 1121222233222 2 22222 35566667
Q ss_pred HHHHHhh----hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCC
Q 021777 149 MLRECIK----FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS 224 (307)
Q Consensus 149 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~ 224 (307)
.||.+.. .+.....+.+...+-.+.+.+..+++++-..|-.++..+-..+........... .+.-.-.||.++
T Consensus 357 aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSMLKNLIHSK 433 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT---HHHHHHTTTTCS
T ss_pred HHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHhCC
Confidence 7887663 566667777888888999999999999999999999998766666666665554 456677899999
Q ss_pred CceeecchhhhhHHhhcCCC
Q 021777 225 NYVTRRQSLKLLSEFLLEPP 244 (307)
Q Consensus 225 NYVTkRQSLKLLgelLldr~ 244 (307)
+--+++.+..-|..|..++.
T Consensus 434 ~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999987653
No 40
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=76.34 E-value=26 Score=33.47 Aligned_cols=150 Identities=15% Similarity=0.233 Sum_probs=111.7
Q ss_pred HHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCc-------chhhh
Q 021777 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNK-------EVALH 145 (307)
Q Consensus 73 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~-------dial~ 145 (307)
+|.-+..++.+..+...+..=.||.--|+-..|..++-+.. ..+.+||..|-|-+.....+-=.. .+-=.
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 44445555666677788888899999999999999987643 246799999887665554432222 33445
Q ss_pred hhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcC-h-HHHHHHHHhhHHHHHHHHHhhhcC
Q 021777 146 CGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKH-L-TVVSEYLTAHYDEFFDLYEKLLTS 223 (307)
Q Consensus 146 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~H-k-~lvaefl~~Nyd~Ff~~yn~Ll~s 223 (307)
.|.+|-+=.-+....+||-..+.+.-+...+..++=-|.-+||..||-...+- | +-|.+.|..|=++
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k----------- 301 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK----------- 301 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH-----------
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH-----------
Confidence 68888887778888999988888988889999999999999999999776533 3 5778999999555
Q ss_pred CCceeecchhhhhHHhhcCCC
Q 021777 224 SNYVTRRQSLKLLSEFLLEPP 244 (307)
Q Consensus 224 ~NYVTkRQSLKLLgelLldr~ 244 (307)
=|++|..+..||.
T Consensus 302 --------Ll~fl~~f~~d~~ 314 (341)
T 1upk_A 302 --------LIEFLSKFQNDRT 314 (341)
T ss_dssp --------HHHHHHHTTTTC-
T ss_pred --------HHHHHHhCCCCCc
Confidence 3566777777773
No 41
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.67 E-value=11 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=43.8
Q ss_pred hcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhh-cHhHHHHHHhc
Q 021777 80 EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN-HFELLDFLVVC 136 (307)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~-~peil~~Ll~g 136 (307)
.++|..|+ +...++.+-|..++.|.+++||.. +|+++++.+ +|..++.++..
T Consensus 70 f~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN----P~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 70 FALLANLS-LNENLPLTLRELSTRVITSCLRNN----PPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHH-hhccCChhHHHHHHHHHHHHHccC----HHHHHHHHHhChhHHHHHHHH
Confidence 37888888 555699999999999999999954 568999998 79999999854
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.59 E-value=10 Score=37.92 Aligned_cols=185 Identities=8% Similarity=-0.014 Sum_probs=98.7
Q ss_pred CCchhhhhHHHHHHHhhccccCCc--cchhHHhh----hcHhHHHHHHhcc--cCcchhhhhhHHHHHHhhhhHHHHHHh
Q 021777 93 LGWEARKDLVHCWSILLKQKVDST--YCCVQFIE----NHFELLDFLVVCY--DNKEVALHCGIMLRECIKFPSLARYIL 164 (307)
Q Consensus 93 L~fE~RKdv~~If~~llR~~~~~~--~p~v~Yl~----~~peil~~Ll~gY--~~~dial~~G~mLRecik~e~la~~iL 164 (307)
-+.+.|.-++.++.+.+...-..+ .+.-.|-. .+..|-..|+.+- +++.+ ..++.++.+..+++.-.. -
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~--~ 125 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVN--Q 125 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT--C
T ss_pred CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc--c
Confidence 456677777777777664221000 00000110 1222333333332 33445 566666666665532100 0
Q ss_pred cchhHHHhhhhccCC--CchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCC--CceeecchhhhhHHhh
Q 021777 165 ESASFELFFKFVELP--TFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS--NYVTRRQSLKLLSEFL 240 (307)
Q Consensus 165 ~~~~f~~fF~yv~~~--~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~--NYVTkRQSLKLLgelL 240 (307)
..+.+..+++.++.+ +-++--.|+.++..+...-. .+.+....+.++..+.+.+.++ +.-.|..+++-|+.++
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 123445556667776 66676778888877764321 2335566777888888888887 7888999999999987
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeee
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFV 285 (307)
.. -..-+..+.....-+..+..++.|....++-.|+.++--++
T Consensus 203 ~~--~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 203 EF--TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp GG--CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 41 00000000000113555556667777777777776665444
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=70.98 E-value=38 Score=31.74 Aligned_cols=187 Identities=10% Similarity=0.001 Sum_probs=101.3
Q ss_pred HhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch------hhhhhHHHH
Q 021777 78 CKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV------ALHCGIMLR 151 (307)
Q Consensus 78 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di------al~~G~mLR 151 (307)
+..+++..++..+..=+.+.|+.+..-+..+...-..... ...| .++++..+...-++++- +-..|.+..
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~---~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR-ENVI---MSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH-HHHH---HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh-hhHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3456777777777777788888888777766543221100 0011 24444444443333321 111222211
Q ss_pred HHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecc
Q 021777 152 ECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQ 231 (307)
Q Consensus 152 ecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQ 231 (307)
-+ ..+..... ..--+...++.++=+|-..|+..+..+...... + ...+.+...+.+++.++++-+|..
T Consensus 354 ~~-~~~~~~~~-----l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~~lp~l~~~~~d~~~~vr~~ 421 (588)
T 1b3u_A 354 IL-GKDNTIEH-----LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---R---QLSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp HH-CHHHHHHH-----THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---H---HHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred Hh-hHhHHHHH-----HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---H---HHHHHHHHHHHHHhcCCCchHHHH
Confidence 11 11111111 111222334455556666666666665543221 1 112345556667889999999999
Q ss_pred hhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 232 SLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 232 SLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
++..||.+... +..-.-.+.-+..++.+|.|+...++-.|...+.-++.
T Consensus 422 ~~~~l~~l~~~------~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 422 IIEYMPLLAGQ------LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470 (588)
T ss_dssp HHHHHHHHHHH------HCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------cCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999987631 00011134556788888999999999888877765544
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=70.57 E-value=19 Score=30.65 Aligned_cols=151 Identities=14% Similarity=0.032 Sum_probs=105.9
Q ss_pred CCCchhhhhHHHHHHHhhccccCCccchhHHhhh-cHhHHHHHHhcccCcc--hhhhhhHHHHHHhhhhHHHHHHhcchh
Q 021777 92 ILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN-HFELLDFLVVCYDNKE--VALHCGIMLRECIKFPSLARYILESAS 168 (307)
Q Consensus 92 ~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~-~peil~~Ll~gY~~~d--ial~~G~mLRecik~e~la~~iL~~~~ 168 (307)
+-+...|+.+...+..+.+.- +. .+.. .+.++..|+....++. +--.+..-|..|+..-.+ +..
T Consensus 68 d~~~~V~~~a~~~l~~la~~l-~~------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~l 134 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGL-AK------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQ 134 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-GG------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHH
Confidence 557778888888888887532 21 1222 4778888988887654 555666777776654322 234
Q ss_pred HHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHH
Q 021777 169 FELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHI 248 (307)
Q Consensus 169 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~v 248 (307)
+..+...++..+-.+-..+...+..++.+|..- .+....++.+....-+++..+++-.|..+..-||.+...=. ...
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~--~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg-~~~ 211 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG-DKA 211 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC-HHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC-HHH
Confidence 455677788889999999999999999887421 12233456788888899999999999999999999874322 355
Q ss_pred HHHHhcChhh
Q 021777 249 MKRYILEVRF 258 (307)
Q Consensus 249 M~rYis~~~N 258 (307)
+..|+.+-+.
T Consensus 212 ~~~~l~~L~~ 221 (242)
T 2qk2_A 212 VTPLLADVDP 221 (242)
T ss_dssp HGGGGTTSCH
T ss_pred HHHHHHhcCH
Confidence 7777776544
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.26 E-value=40 Score=27.26 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=81.1
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
+.+..|+..|..=+.+.|..+......+ + .|+.+..|+...++++-..-.. ++ +.+.
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~-----~-----------~~~~~~~L~~~l~d~~~~vr~~-----a~--~aL~ 101 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQI-----G-----------DERAVEPLIKALKDEDGWVRQS-----AA--VALG 101 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH-----C-----------CGGGHHHHHHHTTCSSHHHHHH-----HH--HHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhh-----C-----------CHHHHHHHHHHHcCCCHHHHHH-----HH--HHHH
Confidence 5566666666655555555555444432 1 2455555555555544211110 00 1111
Q ss_pred HHHhcch-hHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHh
Q 021777 161 RYILESA-SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239 (307)
Q Consensus 161 ~~iL~~~-~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgel 239 (307)
+ +.++ .+..+.+.+..++-+|-.-|...+..+=. ......+.+++.+++.-+|+.++.-||.+
T Consensus 102 ~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 102 Q--IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp H--HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred H--hCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1 1222 34444455556666665555555544311 12334556778888888888888888876
Q ss_pred hcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehh
Q 021777 240 LLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAF 278 (307)
Q Consensus 240 Lldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAF 278 (307)
.+++-+..+..+|.|++..++..|-
T Consensus 166 --------------~~~~~~~~L~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 166 --------------GGERVRAAMEKLAETGTGFARKVAV 190 (201)
T ss_dssp --------------CSHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHhCCCHHHHHHHH
Confidence 5678888888888888877776654
No 46
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.14 E-value=81 Score=30.04 Aligned_cols=138 Identities=10% Similarity=0.150 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHh
Q 021777 44 EEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFI 123 (307)
Q Consensus 44 eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl 123 (307)
+|..+.|..+|.++..|.+ +|+|+.+.|=+..|+.....-+-+...-+-.-|..++-+--| .+=+
T Consensus 133 ~~lr~aLfsLk~~~q~D~~----------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-----m~gv 197 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKD----------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-----MLGV 197 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTT----------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-----HHHH
T ss_pred HHHHHHHHHHHHHhhcchH----------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-----ccch
Confidence 5777889999999986665 999999998888899888888777777777777766654221 2224
Q ss_pred hhcHhHHHHHHhcccC--cchhhhhhHHHHHHhhh-hHHHHHHhcchh----------HHHhhhhcc---CCCchhhhch
Q 021777 124 ENHFELLDFLVVCYDN--KEVALHCGIMLRECIKF-PSLARYILESAS----------FELFFKFVE---LPTFDVASDA 187 (307)
Q Consensus 124 ~~~peil~~Ll~gY~~--~dial~~G~mLRecik~-e~la~~iL~~~~----------f~~fF~yv~---~~~FdiasDA 187 (307)
..||+.+..+..--.. +.+.-.+..+|.-++-+ |..+..+...-. +..+.+.++ .++=|+..-|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 4478888888653332 23333455555554444 323333222111 445555555 5666666666
Q ss_pred HHHHHHHhh
Q 021777 188 FSTFKDLLT 196 (307)
Q Consensus 188 f~Tfkellt 196 (307)
++-+..+|.
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666655
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=68.05 E-value=11 Score=35.47 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=71.8
Q ss_pred HHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHH
Q 021777 170 ELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIM 249 (307)
Q Consensus 170 ~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM 249 (307)
-.++.+++.++-+|-..|..++..+...... ++. .+.+.....+++.++||-+|..++..+|++...=. .
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~---~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~--- 513 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWA---HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-Q--- 513 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHH---HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-H---
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhH---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-H---
Confidence 3445667778888888888888877654322 221 35566667778899999999999999998863100 0
Q ss_pred HHHhcChhhHHHHHHHhcCCCcCceeehheeeeeee
Q 021777 250 KRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285 (307)
Q Consensus 250 ~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFV 285 (307)
..|. +.-+..++.+|+|+..+++..|...+..++
T Consensus 514 ~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 514 DITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 0111 355678888899999999988877665444
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=65.90 E-value=17 Score=36.24 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=63.4
Q ss_pred hhhhccCCCc-hhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHH
Q 021777 172 FFKFVELPTF-DVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (307)
Q Consensus 172 fF~yv~~~~F-diasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (307)
+.+.++.++- .+-.+++..+..+......-... .++.++....+.+.++++-+|+.++.++|++...- -.-+.
T Consensus 602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~--~~~~~ 675 (861)
T 2bpt_A 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK----YLETFSPYLLKALNQVDSPVSITAVGFIADISNSL--EEDFR 675 (861)
T ss_dssp HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT--GGGGH
T ss_pred HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--chhcc
Confidence 3344444444 56666766666554432222223 34557777777778899999999999999887421 12233
Q ss_pred HHhcChhhHHHHHHHhcCCC--cCceeehheeeeeee
Q 021777 251 RYILEVRFLKVMMTLLKDSS--KNIQISAFHIFKVMI 285 (307)
Q Consensus 251 rYis~~~NLKl~M~LL~d~s--knIq~EAFhVFKvFV 285 (307)
.|+ ++-+..++..|++.. ..++-.|+..+.-++
T Consensus 676 ~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 676 RYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp HHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 343 344556667777764 666666666654433
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.80 E-value=53 Score=26.74 Aligned_cols=156 Identities=12% Similarity=0.032 Sum_probs=89.6
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
+.+..|+..+..=+.+.|..+......+- .++.+..|+....+++-. +|... -+.+.
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~~~~~~------vr~~a-~~aL~ 106 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIG----------------DERAVEPLIKALKDEDGW------VRQSA-AVALG 106 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCSSHH------HHHHH-HHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------------CHHHHHHHHHHHcCCCHH------HHHHH-HHHHH
Confidence 45566666666666677776666655431 144445555544444321 11110 01111
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++ -..+.+..+.+.++.++-+|-..|...+..+= +.. -...+.+++.+++.-+|+.++.-||.+
T Consensus 107 ~~-~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~------------~~~~L~~~l~d~~~~vr~~a~~aL~~~- 170 (211)
T 3ltm_A 107 QI-GDERAVEPLIKALKDEDWFVRIAAAFALGEIG--DER------------AVEPLIKALKDEDGWVRQSAADALGEI- 170 (211)
T ss_dssp HH-CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CGG------------GHHHHHHHTTCSSHHHHHHHHHHHHHH-
T ss_pred Hh-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence 11 11123444455566677777777776666551 221 233455677888888899999999886
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecC
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHF 288 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP 288 (307)
.+++-+..+..+|.|++..++-+|-...+-+--++
T Consensus 171 -------------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 171 -------------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -------------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -------------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 45788888889999999888888876655444333
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.50 E-value=57 Score=26.30 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=73.9
Q ss_pred HhhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch--hhhhhHHHHHHhh
Q 021777 78 CKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV--ALHCGIMLRECIK 155 (307)
Q Consensus 78 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di--al~~G~mLRecik 155 (307)
-..+.+..|+..|..=+.+.|..+......+ ..|+.+..|+...++++- -..+-..|.
T Consensus 73 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~---- 132 (201)
T 3ltj_A 73 GDERAVEPLIKALKDEDGWVRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAFALG---- 132 (201)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHcCCCHHHHHHHHHHHH----
Confidence 3345777788877776666776666655543 125666677776666552 222222221
Q ss_pred hhHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhh
Q 021777 156 FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKL 235 (307)
Q Consensus 156 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKL 235 (307)
++ =..+.+..+.+.++.++-+|-..|...+..+= -+........++.+++...|+.+..-
T Consensus 133 -----~~-~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 133 -----EI-GDERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp -----HH-TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----Hh-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 11234445556677777777777777776651 13344556677888888888888888
Q ss_pred hHHh
Q 021777 236 LSEF 239 (307)
Q Consensus 236 Lgel 239 (307)
|+.+
T Consensus 193 L~~l 196 (201)
T 3ltj_A 193 LETH 196 (201)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8775
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.99 E-value=20 Score=29.41 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 214 FDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 214 f~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
...+.+++.+++.-+|+.++..||.+ .+++-+..+..+|.|++..++..|....
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~--------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEI--------------GDERAVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH--------------CCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455677788888888888888775 3467788888888888888887776543
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=60.18 E-value=34 Score=30.97 Aligned_cols=187 Identities=9% Similarity=-0.022 Sum_probs=102.0
Q ss_pred CCCchhhhhHHHHHHHhhccccCCccchh--HH--h--hhcHhHHHHHHhcc--cCcchhhhhhHHHHHHhhhhHHHHHH
Q 021777 92 ILGWEARKDLVHCWSILLKQKVDSTYCCV--QF--I--ENHFELLDFLVVCY--DNKEVALHCGIMLRECIKFPSLARYI 163 (307)
Q Consensus 92 ~L~fE~RKdv~~If~~llR~~~~~~~p~v--~Y--l--~~~peil~~Ll~gY--~~~dial~~G~mLRecik~e~la~~i 163 (307)
..+.+.|.-++.++.+++++.-..+...+ .| + ..+..|-..|+.+- +++.+ -..+..|-+..+++.-..
T Consensus 48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~-- 124 (462)
T 1ibr_B 48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN-- 124 (462)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--
T ss_pred CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--
Confidence 45677888888888887754311100000 00 1 01233444444432 33445 556666655555531100
Q ss_pred hcchhHHHhhhhccCC--CchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCC--CceeecchhhhhHHh
Q 021777 164 LESASFELFFKFVELP--TFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSS--NYVTRRQSLKLLSEF 239 (307)
Q Consensus 164 L~~~~f~~fF~yv~~~--~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~--NYVTkRQSLKLLgel 239 (307)
-..+.+-.+++.++.+ +.++---|+.++..+..... .+.+..+.+.++..+.+++.++ +--.|..+++-|+.+
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC---chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 1123444566677777 77777778888888775431 1224555667888888888888 778899999999997
Q ss_pred hcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 240 LLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 240 Lldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
+.--. ..+..+...+.-+..+-.++.+....++-.|+.+|.-++.
T Consensus 202 ~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 202 LEFTK--ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp TTTTH--HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 63100 0010000000013334445667777777777777665543
No 53
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=57.17 E-value=1.8e+02 Score=30.04 Aligned_cols=102 Identities=7% Similarity=0.004 Sum_probs=63.6
Q ss_pred CCCchhhhhHHHHHHHhhccccCC-----ccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcc
Q 021777 92 ILGWEARKDLVHCWSILLKQKVDS-----TYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILES 166 (307)
Q Consensus 92 ~L~fE~RKdv~~If~~llR~~~~~-----~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~ 166 (307)
..+-+.|--++.++.+.+++.-.. ..|.-+.-.=+..++..|... .+.+.-..|..+...++++--.+ +.
T Consensus 48 ~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~---Wp 122 (960)
T 1wa5_C 48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDR---WP 122 (960)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTT---CT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccc---hh
Confidence 346788999999999888754321 222111111145566666653 35666677777776666643211 23
Q ss_pred hhHHHhhhhccCCCchhhhchHHHHHHHhhcC
Q 021777 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTKH 198 (307)
Q Consensus 167 ~~f~~fF~yv~~~~FdiasDAf~Tfkellt~H 198 (307)
+.+..+++.++.++...--.|+.++.+++.+.
T Consensus 123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 45567777888777777777888888887754
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=55.84 E-value=1.4e+02 Score=29.54 Aligned_cols=47 Identities=4% Similarity=0.142 Sum_probs=30.9
Q ss_pred hhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhh
Q 021777 174 KFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLL 221 (307)
Q Consensus 174 ~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll 221 (307)
+.+..++-.|.+.|...+.++...+++. .+.+....+.++....+++
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~ 232 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLI 232 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999987655543 3344455555665555544
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=54.92 E-value=18 Score=31.81 Aligned_cols=176 Identities=11% Similarity=0.179 Sum_probs=92.4
Q ss_pred CCCCchhhhhHHHHHHH-hhccccCCccc--hhHHhhhcHhHHHHHHhcc-cCcchhh--hhhHHHHHHhhh---hHHH-
Q 021777 91 PILGWEARKDLVHCWSI-LLKQKVDSTYC--CVQFIENHFELLDFLVVCY-DNKEVAL--HCGIMLRECIKF---PSLA- 160 (307)
Q Consensus 91 ~~L~fE~RKdv~~If~~-llR~~~~~~~p--~v~Yl~~~peil~~Ll~gY-~~~dial--~~G~mLRecik~---e~la- 160 (307)
..=+|..||.+..-... ++... .+.. ..+| .++++.|..+- .++++.. .+...|....+. +.+.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~--~~i~~~~~~~----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQT--KKLKSTSQNY----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGC--CCBCCTTCCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--CccccCcccH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45588899999988887 77421 1111 1122 57888888877 4555433 222222221100 0000
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
.|. ...+-.+++.+....=.|..-|...+..+...-.+ .+.+ ...+...+.....|++.|.=+|.+++.+|+.++
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~--~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASS--GRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTT--CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccC--CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 000 01122333444443333333333333222211000 0000 115567777778889999999999999999999
Q ss_pred cCCCCH-HHHHHHhcChhhHHHHHHHhcCCCcCceeehh
Q 021777 241 LEPPNS-HIMKRYILEVRFLKVMMTLLKDSSKNIQISAF 278 (307)
Q Consensus 241 ldr~N~-~vM~rYis~~~NLKl~M~LL~d~sknIq~EAF 278 (307)
-.-.-. ..+..|+ +++-+..++.+|.|..+.++-.|+
T Consensus 175 ~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 175 KEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 643321 4455565 234566778888888777765554
No 56
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=51.22 E-value=1.1e+02 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=24.4
Q ss_pred hHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch
Q 021777 100 DLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV 142 (307)
Q Consensus 100 dv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di 142 (307)
.+...+..++..+. ..+++.+||+.+..|..+-+.+..
T Consensus 73 ~~l~CLkalmn~~~-----G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 73 EIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp HHHHHHHHHTSSHH-----HHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred HHHHHHHHHhCChH-----HHHHHHcCcHHHHHHHHHhCCCCc
Confidence 33444444444333 578888889888888887765544
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=50.77 E-value=1.2e+02 Score=31.97 Aligned_cols=193 Identities=8% Similarity=0.108 Sum_probs=104.5
Q ss_pred hcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhh-hcHhHHHHHHhcccC-cch--hhhhhHHHHHHhh
Q 021777 80 EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIE-NHFELLDFLVVCYDN-KEV--ALHCGIMLRECIK 155 (307)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~-~~peil~~Ll~gY~~-~di--al~~G~mLRecik 155 (307)
..++..|+..+..=+-+.|.-+....+.+...-.... ....+.. ..|+++..|+.+.++ ++. ...+=.+|.++++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3456667777666555667776666665554322110 0000111 258899999988863 433 2333334444442
Q ss_pred h--hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHh-hhcCCCceeecch
Q 021777 156 F--PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEK-LLTSSNYVTRRQS 232 (307)
Q Consensus 156 ~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~-Ll~s~NYVTkRQS 232 (307)
. +.+..++ .+.+..++..++.++-.|-.-|...+..+...... ++ ++.++..+-+ |-..++.-.|+++
T Consensus 164 ~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~----~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 164 RQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV----FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH----HHHHHHHHHHHhccCCchhHHHHH
Confidence 1 1111111 34556677777777777777777777766543321 22 2223333332 3333345688999
Q ss_pred hhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 233 LKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 233 LKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
+..+|++...-.. .+..|+ ++-+..++..+.|+...++--|+..+--++.
T Consensus 235 ~~~l~~l~~~~~~--~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 235 IQCIAAISRQAGH--RIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHHSSG--GGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH--HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999998753211 222333 3456777778888877776666655554444
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=48.40 E-value=1.8e+02 Score=27.36 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHHHHH-hhcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhc---HhHHHHHHhccc----Ccchh
Q 021777 72 QLATEVC-KEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENH---FELLDFLVVCYD----NKEVA 143 (307)
Q Consensus 72 qLa~ei~-~~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~---peil~~Ll~gY~----~~dia 143 (307)
++++.+. ..+.++.|+..|..=+++.||+++...+++-+.. ...++... |.++..|-.+-. .+++.
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 3445555 4688999999999999999999999999997732 23333332 334443332211 12444
Q ss_pred hhhhHHHHHHhh-hhHHHHHHhcchhHHHhhhhccCC-CchhhhchHHHHHHHhhcChH
Q 021777 144 LHCGIMLRECIK-FPSLARYILESASFELFFKFVELP-TFDVASDAFSTFKDLLTKHLT 200 (307)
Q Consensus 144 l~~G~mLRecik-~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~Tfkellt~Hk~ 200 (307)
..+-..|..+++ ....++.+.+...+..+.+....+ +=+|.-.|..++..++ .|++
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~-~~~~ 452 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW-SSKE 452 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS-SSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH-cchh
Confidence 444444555544 456677777777888888777777 6677777777776555 3443
No 59
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=43.89 E-value=1.8e+02 Score=27.50 Aligned_cols=101 Identities=13% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhc--HHHHHHh
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKED--VLILLVH 88 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li~ 88 (307)
.++|.++|+.+++.. .. +.+.+.|..++..|-.. | .. ..+++...+ .|..++.
T Consensus 65 ~~sP~~yi~~L~~~~------~~----------~kl~~~L~sL~v~Lrt~----~-~s----WV~~F~~~Gl~~Ll~iL~ 119 (383)
T 3eg5_B 65 SRSAMMYIQELRSGL------RD----------MHLLSCLESLRVSLTSH----P-VS----WVQTFGAEGLASLLDILK 119 (383)
T ss_dssp CCCHHHHHHHHTTTC------CH----------HHHHHHHHHHHHHHHHS----C-HH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcc------cc----------hhHHHHHHHHHHHHhhC----c-cH----HHHHHHHccHHHHHHHHH
Confidence 578999999886431 11 13446677777766322 1 12 334444332 3333333
Q ss_pred cCC--------CCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcc
Q 021777 89 KLP--------ILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKE 141 (307)
Q Consensus 89 ~l~--------~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~d 141 (307)
.+. .-+.+-.-.+...+..++..+. ..+++.+||+.+..|..+-+.+.
T Consensus 120 ~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~-----G~~~vl~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 120 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAV 175 (383)
T ss_dssp HHHTCC-------CHHHHHHHHHHHHHHTSSHH-----HHHHHHTCSSHHHHHHHTCCTTS
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHhcchh-----hHHHHHcChHHHHHHHHHhCCCc
Confidence 221 1223333345555666665554 47888899999998888765544
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=42.40 E-value=16 Score=37.87 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhe
Q 021777 217 YEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFH 279 (307)
Q Consensus 217 yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFh 279 (307)
.-.||++++|-+|.-+++||.-|+..|... +-..-++.|.-+-.+|.+|.|++.-||=||-.
T Consensus 127 Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 345789999999999999999999876542 23334448899999999999999988888743
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.53 E-value=46 Score=32.98 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=53.8
Q ss_pred HhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHH
Q 021777 171 LFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (307)
Q Consensus 171 ~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (307)
.+|..+..++-+|..-|+.++-.+.+. .|.+.....+-..+.+.++-.|+.++.-+|.+-..
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~----------~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k-------- 415 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNG----------NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK-------- 415 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCS----------SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHccCCChhHHHHHHHHHHHHccc----------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 444444455555555555555444431 22233333333333344555566666666666442
Q ss_pred HHhc-ChhhHHHHHHHhcCCCcCceeehheeeeeeee
Q 021777 251 RYIL-EVRFLKVMMTLLKDSSKNIQISAFHIFKVMIF 286 (307)
Q Consensus 251 rYis-~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVA 286 (307)
|-. -...+..++.+|++....++-|+.++++-.+.
T Consensus 416 -~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 416 -YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp -SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred -hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 111 12246778889999988899999988886655
No 62
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=37.72 E-value=2.9e+02 Score=26.68 Aligned_cols=190 Identities=7% Similarity=0.035 Sum_probs=112.3
Q ss_pred hcHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhh---cHhHHHHHHhcccCcchhhhhhHHHHHHhh-
Q 021777 80 EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN---HFELLDFLVVCYDNKEVALHCGIMLRECIK- 155 (307)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~mLRecik- 155 (307)
.+.++.|+..|..=+-|.+.+++....++-... ....-+.+.+ =|-++..|.++ .++++--.+-..|+.+..
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~---~~~~k~~I~~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRA---DVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC---CHHHHHHHHHTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC---CHHHHHHHHHcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHccC
Confidence 356778888887767777888777777764320 0001223322 14444444432 233333333344454444
Q ss_pred hhHHHH-HHhcchhHHHhhhhccCCCc----hhhhchHHHHHHHh---hcChHHHHHHHHhhHHHHHHHHHhhhcCCCce
Q 021777 156 FPSLAR-YILESASFELFFKFVELPTF----DVASDAFSTFKDLL---TKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYV 227 (307)
Q Consensus 156 ~e~la~-~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfkell---t~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYV 227 (307)
.+.... ++.....+--+.+.+..+.= +|..+|..+++-+= +.+........+.+ .+...-+||.+++.-
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLT 394 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHHHHSSCSCHH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---cHHHHHHHHcCCChH
Confidence 222222 22245555555555444332 46666666666543 35555555555554 356677899999999
Q ss_pred eecchhhhhHHhhc-CCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehhee
Q 021777 228 TRRQSLKLLSEFLL-EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (307)
Q Consensus 228 TkRQSLKLLgelLl-dr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhV 280 (307)
+++++...|+.+-. ++.| ..+|-+..-+..+..||++++..++-+|--.
T Consensus 395 v~~~A~~aL~nLa~~~~~~----~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKD----QEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHH----HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999974 3332 4556666778999999999999888776443
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=37.09 E-value=2e+02 Score=29.46 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=79.7
Q ss_pred CchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcch---hhhhhHHHHHHhhhhHHH---HHHhcch
Q 021777 94 GWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV---ALHCGIMLRECIKFPSLA---RYILESA 167 (307)
Q Consensus 94 ~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~di---al~~G~mLRecik~e~la---~~iL~~~ 167 (307)
+-+....+..++..+++--.+.-.| |+ |.++..|+.+|.+.+. --..|.+++.+=.++.+. ..++. +
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p---~l---~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~ 778 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQP---ML---QDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLR-E 778 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CT---HH---HHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHH-H
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccc---cH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHH-H
Confidence 3456677777777755432111122 32 6788888888887532 233444555433322111 11111 1
Q ss_pred hHHHhhhhccCC-------CchhhhchHHHHHHHhhcChHHHHHHHHhh-HHHHHHHHHhhhcCCCceeecchhhhhHHh
Q 021777 168 SFELFFKFVELP-------TFDVASDAFSTFKDLLTKHLTVVSEYLTAH-YDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239 (307)
Q Consensus 168 ~f~~fF~yv~~~-------~FdiasDAf~Tfkellt~Hk~lvaefl~~N-yd~Ff~~yn~Ll~s~NYVTkRQSLKLLgel 239 (307)
.+..+|+.+... .=|+..+.|.-+..++..++..+-. +.- ++.++..--.-+..++..+.|-+++++..+
T Consensus 779 ~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~ 856 (971)
T 2x1g_F 779 FIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHF 856 (971)
T ss_dssp HHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 122233333222 3367777777777777776654421 222 555665555555678888889999999997
Q ss_pred hcCCCCHHHHHHHhc
Q 021777 240 LLEPPNSHIMKRYIL 254 (307)
Q Consensus 240 Lldr~N~~vM~rYis 254 (307)
+........+.+++.
T Consensus 857 i~~~~~~~~~~~~~~ 871 (971)
T 2x1g_F 857 VMQSRNHAHVTEVVL 871 (971)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HhcCCchHHHHHHHH
Confidence 765434455555554
No 64
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=36.39 E-value=1.7e+02 Score=31.43 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=59.5
Q ss_pred cCcchhhhhhHHHHHHhhhhHHHHHHhc--chhHHHhhhh----ccCCCchhhhchHHHHHHHhhc-----ChHHHHHHH
Q 021777 138 DNKEVALHCGIMLRECIKFPSLARYILE--SASFELFFKF----VELPTFDVASDAFSTFKDLLTK-----HLTVVSEYL 206 (307)
Q Consensus 138 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~y----v~~~~FdiasDAf~Tfkellt~-----Hk~lvaefl 206 (307)
++||.-...=.+++.++.+- =..+|. ++.|..+++. +..+.-||+.-++.++.+++.+ ....+.+|.
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~--f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~ 893 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKS--FAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHC--THHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHC--hHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 45776666666666666552 133444 3477777773 5689999999999999999962 345777999
Q ss_pred HhhHHHHHHHHHhhhcCC
Q 021777 207 TAHYDEFFDLYEKLLTSS 224 (307)
Q Consensus 207 ~~Nyd~Ff~~yn~Ll~s~ 224 (307)
.+.|-.++++.-..+...
T Consensus 894 ~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 894 KNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999888877766544443
No 65
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.68 E-value=2.1e+02 Score=24.18 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheee
Q 021777 213 FFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIF 281 (307)
Q Consensus 213 Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVF 281 (307)
.....-+++.+++.-.|+.++.-||.+= ..+++-+..+..+|.|++..++.+|-...
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININK------------YDNSDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHT------------CCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhc------------cCcHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444445666666666666666666541 12566777888888888888887776544
No 66
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=32.89 E-value=21 Score=33.97 Aligned_cols=101 Identities=12% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhc--HHHHHH
Q 021777 10 RPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKED--VLILLV 87 (307)
Q Consensus 10 ~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li 87 (307)
++.+|..+|+.+++.. +. +.+.+.|..++..|-..+ .. -.+++.+.+ .|..++
T Consensus 2 ~~~~P~~yv~~L~~~~------~~----------~~~~~~L~~L~v~Lrt~~-----~~----Wv~~F~~~Gl~~Ll~~L 56 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL------RD----------MHLLSCLESLRVSLNNNP-----VS----WVQTFGAEGLASLLDIL 56 (386)
T ss_dssp -CCCHHHHHHHHTSCC------CH----------HHHHHHHHHHHHHHHHSC-----HH----HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc------ch----------HHHHHHHHHHhHHHhcCC-----cH----HHHHHHHhHHHHHHHHH
Confidence 3789999999987632 11 124566666666664332 12 333333332 222222
Q ss_pred hcCCCC--------CchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCc
Q 021777 88 HKLPIL--------GWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNK 140 (307)
Q Consensus 88 ~~l~~L--------~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~ 140 (307)
..+..- +.+---.+...+..++..+. ..+++..||+.+..|..+-+.+
T Consensus 57 ~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~-----Gl~~vl~~~~~i~~l~~sL~s~ 112 (386)
T 2bnx_A 57 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPA 112 (386)
T ss_dssp HHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHH-----HHHHHHHSSSHHHHHHHTCCTT
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHhCCHH-----HHHHHHcCcHHHHHHHHHhCCC
Confidence 222111 11111233344444444333 4677777777777777665544
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=32.13 E-value=1.9e+02 Score=27.17 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=79.1
Q ss_pred HhHHHHHHhcccCcchhhhhhHHHHHHhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHH
Q 021777 127 FELLDFLVVCYDNKEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEY 205 (307)
Q Consensus 127 peil~~Ll~gY~~~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaef 205 (307)
|.++..|-++ ++++-..+-..|+....+ +..-..+.....+-.+.+.+..++=++.-.|..+++.+...+...-...
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444433 566666677777775544 4444477777888888889888888898899999998876545444444
Q ss_pred HHhhHHHHHHHHHhhhc-CCCceeecchhhhhHHhhcCCCCHH
Q 021777 206 LTAHYDEFFDLYEKLLT-SSNYVTRRQSLKLLSEFLLEPPNSH 247 (307)
Q Consensus 206 l~~Nyd~Ff~~yn~Ll~-s~NYVTkRQSLKLLgelLldr~N~~ 247 (307)
.... -....-+||. +++.=+++++.-.|+.|-.+..|..
T Consensus 83 ~~~G---~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 83 RRQN---GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp HHTT---CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred HHcC---CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 4433 2334556777 7788888888888888887766554
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=31.02 E-value=3.2e+02 Score=25.18 Aligned_cols=196 Identities=8% Similarity=0.065 Sum_probs=118.5
Q ss_pred hcHHHHHHhcCCCCCchhhhhHHHHHHHhhcc-ccCCccchhHHhhh---cHhHHHHHHhcccCcchhhhhhHHHHHHhh
Q 021777 80 EDVLILLVHKLPILGWEARKDLVHCWSILLKQ-KVDSTYCCVQFIEN---HFELLDFLVVCYDNKEVALHCGIMLRECIK 155 (307)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKdv~~If~~llR~-~~~~~~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~mLRecik 155 (307)
.+.++.|+..|..=+-+.+.+++....++-.. ... .-+.+.+ =|-++..|.++ .++++--.+-..|+.+..
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~----~k~~i~~~G~Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN----SKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH----HHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH----HHHHHHHCCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 46688888888877778888888888777542 111 1122322 24555555443 233333333445555554
Q ss_pred -hhHHHHHHh-cchhHHHhhhhccCCCc----hhhhchHHHHHHHh---hcChHHHHHHHHhhHHHHHHHHHhhhcCCCc
Q 021777 156 -FPSLARYIL-ESASFELFFKFVELPTF----DVASDAFSTFKDLL---TKHLTVVSEYLTAHYDEFFDLYEKLLTSSNY 226 (307)
Q Consensus 156 -~e~la~~iL-~~~~f~~fF~yv~~~~F----diasDAf~Tfkell---t~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NY 226 (307)
.+.....+. ....+--+.+.+..++- +|..+|..+++-+= +.+........+.+ .+...-+||.+++.
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g---~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSL 277 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT---HHHHHHHHTTCSCH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC---CHHHHHHHHcCCCh
Confidence 323323333 55555555555554432 46666666665543 24555444444433 45667789999999
Q ss_pred eeecchhhhhHHhhc-CCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeec
Q 021777 227 VTRRQSLKLLSEFLL-EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFH 287 (307)
Q Consensus 227 VTkRQSLKLLgelLl-dr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVAN 287 (307)
-+++.+...|+.+-. +..| .++|-+..-+..+..||++++..++-+|--...-..++
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~----~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKD----QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHH----HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHH----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999974 3333 34455566788889999999998888776555444443
No 69
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=30.92 E-value=2.1e+02 Score=26.79 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=83.9
Q ss_pred CCCCchhhh-hHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhc---------ccCcchhhhhhHHHHHHhhhhHHH
Q 021777 91 PILGWEARK-DLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC---------YDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 91 ~~L~fE~RK-dv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~g---------Y~~~dial~~G~mLRecik~e~la 160 (307)
..-.-++|- .|-.+++.++++-.+.=. ++ =|.|++.+..+ .+.||.-...=.+||.|+.|---+
T Consensus 83 ~~~vp~aRepeVL~l~~tii~kl~~~i~---~~---vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~a 156 (321)
T 1w9c_A 83 QRNVPAAREPEVLSTMAIIVNKLGGHIT---AE---IPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPA 156 (321)
T ss_dssp HTSCGGGCCTHHHHHHHHHHHHHGGGGG---GG---HHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTH
T ss_pred HhCCcccccHHHHHHHHHHHHHHHHHhh---hh---HHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHH
Confidence 333444554 455555555543322111 12 26777766542 678999999999999999873222
Q ss_pred HHHhcchhHHHhhhh----ccCCCchhhhchHHHHHHHhhc---ChHHHHHHHHhhHHHHHHHHHhhhcCCC
Q 021777 161 RYILESASFELFFKF----VELPTFDVASDAFSTFKDLLTK---HLTVVSEYLTAHYDEFFDLYEKLLTSSN 225 (307)
Q Consensus 161 ~~iL~~~~f~~fF~y----v~~~~FdiasDAf~Tfkellt~---Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~N 225 (307)
=.-|..++|..+.+- +..+.-+||--++.++.+++.+ +...+.+|..+.|-...++.-..+..+.
T Consensus 157 l~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 157 FLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 223566777777774 6789999999999999999884 3456668877777777776655444443
No 70
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.55 E-value=75 Score=25.61 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHH
Q 021777 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLI 84 (307)
Q Consensus 40 ~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~ 84 (307)
++..+|++|-|..+-+-|...+=.++.-+...+|++++-+.|.-.
T Consensus 35 k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~ 79 (118)
T 2yru_A 35 KQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDA 79 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 455799999999999888755444555677888888887777643
No 71
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=27.34 E-value=1.1e+02 Score=27.58 Aligned_cols=72 Identities=21% Similarity=0.092 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHHHhhccccch-hhHHhhHHHHHHHHHHHHHhhhhhcC------------------------------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTV-VEVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~-~~~~~~~k~~eevsK~L~~mK~iL~G------------------------------ 59 (307)
|..-..+|+.+.+.|..++.... .=.++.+++.+++.+.-.+++..+-.
T Consensus 127 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 206 (286)
T 3gi1_A 127 PVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGI 206 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEeecccc
Confidence 66677899999999999986432 01244455556665555555555432
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcH
Q 021777 60 DGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 60 ~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
.++.||++..+++|.+.+-+.+.
T Consensus 207 ~~~~eps~~~l~~l~~~ik~~~v 229 (286)
T 3gi1_A 207 SPEQEPSPRQLKEIQDFVKEYNV 229 (286)
T ss_dssp CC---CCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Confidence 23568999999998888766653
No 72
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=27.21 E-value=1.2e+02 Score=27.10 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhcC------------------------------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~G------------------------------ 59 (307)
|..-..+|+.+.+.|..++..... =.++.++..+++.+.-..++..+-+
T Consensus 122 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 201 (284)
T 2prs_A 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTV 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEES
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeEeecc
Confidence 666778999999999999864320 1234445555555444444443321
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 021777 60 DGEVEPNADQVLQLATEVCKED 81 (307)
Q Consensus 60 ~~e~ep~~e~~~qLa~ei~~~d 81 (307)
..+.+|++.++++|.+.+-..+
T Consensus 202 ~~~~eps~~~l~~l~~~ik~~~ 223 (284)
T 2prs_A 202 NPEIQPGAQRLHEIRTQLVEQK 223 (284)
T ss_dssp STTSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 2357899999999888776554
No 73
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.04 E-value=1.2e+02 Score=27.74 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhc---------------------C---------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLS---------------------G--------- 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~---------------------G--------- 59 (307)
|..-..+|+.+.+.|.+++..... =.++.+++.+++.+.-..++..+- |
T Consensus 138 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~ 217 (312)
T 2o1e_A 138 PVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVPIAGL 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHHTTCEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHHCCCeEEEeecc
Confidence 666778999999999999864320 123444555555444444444332 1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 021777 60 DGEVEPNADQVLQLATEVCKED 81 (307)
Q Consensus 60 ~~e~ep~~e~~~qLa~ei~~~d 81 (307)
..+.||++.++++|.+.+-..+
T Consensus 218 ~~~~eps~~~l~~l~~~ik~~~ 239 (312)
T 2o1e_A 218 SPDQEPSAASLAKLKTYAKEHN 239 (312)
T ss_dssp CSSSCCCHHHHHHHHHHTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 2357888888888888765554
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=23.41 E-value=4.6e+02 Score=24.52 Aligned_cols=177 Identities=13% Similarity=0.076 Sum_probs=91.9
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHH--HhhhhH
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRE--CIKFPS 158 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRe--cik~e~ 158 (307)
.++...+..++.=|++-||-+..-+..+... .+.-.-.+.-|. +--.+++ -+.-|.-||- ||+.+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~----------kDl~~~N-~~iR~lALRtL~~I~~~~ 135 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLT----------KDMTGKE-DSYRGPAVRALCQITDST 135 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHH----------HHHHSSC-HHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH----------hhcCCCc-HhHHHHHHHHHhcCCCHH
Confidence 4677788899999999999888888776655 222221222221 1122222 2344444543 333333
Q ss_pred HHHHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHH
Q 021777 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE 238 (307)
Q Consensus 159 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLge 238 (307)
++..+... +-+-+...+=-|.+-|.-..-.++-..+++|. +|+...+.++.+.|+.+.-.++.+|.|
T Consensus 136 m~~~l~~~-----lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--------~~~~~l~~ll~d~n~~V~~~Al~lL~e 202 (355)
T 3tjz_B 136 MLQAIERY-----MKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--------RWVNEAQEAASSDNIMVQYHALGLLYH 202 (355)
T ss_dssp THHHHHHH-----HHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--------TTHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--------HHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 33322211 11123344444555555555566666666653 356666677778887777777777777
Q ss_pred hhc-CCCCH------------------HHHHHHh----cC------hhhHHHHHHHhcCCCcCceeehheeee
Q 021777 239 FLL-EPPNS------------------HIMKRYI----LE------VRFLKVMMTLLKDSSKNIQISAFHIFK 282 (307)
Q Consensus 239 lLl-dr~N~------------------~vM~rYi----s~------~~NLKl~M~LL~d~sknIq~EAFhVFK 282 (307)
+-- ||... -...||+ .+ ..-+.++-..|++++..|.+||..++=
T Consensus 203 i~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 203 VRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp HHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHT
T ss_pred HHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 754 33110 0111221 11 123345566677888888888887653
No 75
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=22.97 E-value=3.8e+02 Score=23.69 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhccccchhhHHhhH--HHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh-cHHHHHHhcCC
Q 021777 15 LEVVKATKVSLMALDIKTVVEVKALE--KAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE-DVLILLVHKLP 91 (307)
Q Consensus 15 ~elVr~~~e~l~~l~~~~~~~~~~~~--k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~-dll~~Li~~l~ 91 (307)
.|.|...-|-|.+||.-.+. -++-. .-.-+++|.|..--+.++|++. -.+|.|..|+.++++- .--..++..+.
T Consensus 75 re~v~d~l~YLkkLD~l~~~-Lq~h~~Lse~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~L~~~~~~ll~~l~ 151 (204)
T 2jqq_A 75 QEIIKDVLEYLKKLDEIYGS-LRNHSQLTEALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYKLITASRRILESCA 151 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CSSSSHHHHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777642110 00000 1123677888877788899866 4488899999887653 22233444444
Q ss_pred CCC
Q 021777 92 ILG 94 (307)
Q Consensus 92 ~L~ 94 (307)
.++
T Consensus 152 dl~ 154 (204)
T 2jqq_A 152 DSN 154 (204)
T ss_dssp SCC
T ss_pred hcC
Confidence 443
No 76
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.94 E-value=1.3e+02 Score=26.82 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhcC------------------------------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~G------------------------------ 59 (307)
|..-..+|+.+.+.|..++..... =.++.+++.+++.+.-..++..+-+
T Consensus 125 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 204 (284)
T 3cx3_A 125 PEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGI 204 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCCEEeeccCC
Confidence 666778899999999999864320 1234444555554444444443321
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcH
Q 021777 60 DGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 60 ~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
.++.||++..+.+|.+.+-..+.
T Consensus 205 ~~~~eps~~~l~~l~~~ik~~~v 227 (284)
T 3cx3_A 205 SPEQEPSPRQLTEIQEFVKTYKV 227 (284)
T ss_dssp STTCCCCSHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Confidence 23678999999999888766543
No 77
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=22.68 E-value=2.2e+02 Score=26.06 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhcC------------------------------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~G------------------------------ 59 (307)
|..-..+|+.+.+.|..++..... =.++.++..+++.+.-.+++..+-+
T Consensus 136 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~~ 215 (307)
T 3ujp_A 136 PRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYMW 215 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEee
Confidence 777888999999999999864320 1133444555554444444433321
Q ss_pred --CCCCCCCHHHHHHHHHHHHhhcH
Q 021777 60 --DGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 60 --~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
..+.||++..+++|.+.+-..+.
T Consensus 216 ~i~~~~ePs~~~l~~l~~~ik~~~v 240 (307)
T 3ujp_A 216 PINAEQQFTPKQVQTVIEEVKTNNV 240 (307)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCC
Confidence 34678889888888888766653
No 78
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.93 E-value=2.5e+02 Score=23.20 Aligned_cols=96 Identities=5% Similarity=-0.046 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhh------cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHh--c
Q 021777 65 PNADQVLQLATEVCKE------DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVV--C 136 (307)
Q Consensus 65 p~~e~~~qLa~ei~~~------dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~--g 136 (307)
|.--...++|+..++. .++..|..-|.+=.-..+-.+-+|...|++.- ....++.+..|..+|..|.. |
T Consensus 27 ~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G---s~~f~~~~r~~~~~Ik~l~~F~g 103 (140)
T 1vdy_A 27 APVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS---GSEFRREMQRNSVAVRNLFHYKG 103 (140)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHTTHHHHTTTTCCC
T ss_pred CcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC---CHHHHHHHHHhHHHHHHHHhcCC
Confidence 3344567777777663 46677788887777777777888888887632 23368888888888888754 4
Q ss_pred ccCcchhhhhhHHHHHHhhhhHHHHHHhc
Q 021777 137 YDNKEVALHCGIMLRECIKFPSLARYILE 165 (307)
Q Consensus 137 Y~~~dial~~G~mLRecik~e~la~~iL~ 165 (307)
..+|--.---|...|+-.+ .+...|..
T Consensus 104 ~~dp~~G~d~g~~VR~~Ak--El~~ll~d 130 (140)
T 1vdy_A 104 HPDPLKGDALNKAVRETAH--ETISAIFS 130 (140)
T ss_dssp CCCTTTSSCHHHHHHHHHH--HHHHHHTC
T ss_pred CCCcccccchhHHHHHHHH--HHHHHHhC
Confidence 4443344566788887663 34444443
No 79
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.35 E-value=1.9e+02 Score=25.94 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhcCC----------------------------C
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSGD----------------------------G 61 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~G~----------------------------~ 61 (307)
|..-..+|+.+.+.|.+++..... =.++.++..+++.+.-..++..+-+- .
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 217 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIPIEVE 217 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEESCBT
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHHCCCEEeecccC
Confidence 677788999999999999864420 12344555566555555555444321 1
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 021777 62 EVEPNADQVLQLATEVCKED 81 (307)
Q Consensus 62 e~ep~~e~~~qLa~ei~~~d 81 (307)
+.+|+|..+++|.+.+-..+
T Consensus 218 ~~eps~~~l~~l~~~ik~~~ 237 (291)
T 1pq4_A 218 GQEPSAQELKQLIDTAKENN 237 (291)
T ss_dssp TBCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 35677777777777665443
No 80
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.18 E-value=2.1e+02 Score=25.62 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHhhccccchh-hHHhhHHHHHHHHHHHHHhhhhhcC------------------------------
Q 021777 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (307)
Q Consensus 11 ~ktP~elVr~~~e~l~~l~~~~~~-~~~~~~k~~eevsK~L~~mK~iL~G------------------------------ 59 (307)
|..-..+|+.+.+.|..++..... =.++.++..+++...-..++..+-+
T Consensus 109 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~ 188 (282)
T 3mfq_A 109 IPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQ 188 (282)
T ss_dssp HHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEeccc
Confidence 677788999999999999864320 1133344444444333333332221
Q ss_pred --CCCCCCCHHHHHHHHHHHHhhc
Q 021777 60 --DGEVEPNADQVLQLATEVCKED 81 (307)
Q Consensus 60 --~~e~ep~~e~~~qLa~ei~~~d 81 (307)
..+.||++.++++|.+.+-+.+
T Consensus 189 ~~~~~~eps~~~l~~l~~~ik~~~ 212 (282)
T 3mfq_A 189 GVSTDSEVANSDMIETVNLIIDHN 212 (282)
T ss_dssp CSSSCSCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcC
Confidence 1346778888888777765554
Done!