BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021778
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P32364|SMY1_YEAST Kinesin-related protein SMY1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=SMY1 PE=1 SV=1
          Length = 656

 Score = 35.4 bits (80), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 42  DKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQK--NKALSEEVE 99
           D +I+ ++ +++   AQ+N LK+E+DS++S  N+      +  M EN K  N  L  +++
Sbjct: 382 DLFIQDMKIKDDNYVAQINILKAEIDSLKSLHNKSLPEDDEKKMLENTKKENIKLKLQLD 441

Query: 100 TLQKLLQEGTASSSKDDNN 118
           ++ +LL   ++S+++D NN
Sbjct: 442 SITQLL---SSSTNEDPNN 457


>sp|Q7Z7B0|FLIP1_HUMAN Filamin-A-interacting protein 1 OS=Homo sapiens GN=FILIP1 PE=2 SV=1
          Length = 1213

 Score = 31.2 bits (69), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 52  NEKLCAQVNNLKSEV------DSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105
           N  L A+V NL+  V      D   + +  QC   +K L EE   +K L  EVE LQK +
Sbjct: 373 NSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRM 432

Query: 106 QE 107
            E
Sbjct: 433 SE 434


>sp|Q28706|K1C12_RABIT Keratin, type I cytoskeletal 12 (Fragment) OS=Oryctolagus cuniculus
           GN=KRT12 PE=2 SV=1
          Length = 411

 Score = 31.2 bits (69), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 59  VNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNN 118
           V +L++++  +RS +  Q + YQ+LL   N K + L  E+ET ++LL +G A     D +
Sbjct: 310 VGDLEAQLQQVRSDTERQNMDYQRLL---NVKAR-LELEIETYRRLL-DGEAQGDGLDES 364

Query: 119 DNMQLYTPEGAQPTSGNQSKEKTRKRRRK 147
             M   T   +Q  S + SK+ ++ R+ K
Sbjct: 365 SAM---TGSRSQAQSIDSSKDPSKTRKIK 390


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.127    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,995,165
Number of Sequences: 539616
Number of extensions: 4426187
Number of successful extensions: 17401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 529
Number of HSP's that attempted gapping in prelim test: 16654
Number of HSP's gapped (non-prelim): 1256
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)