Query 021778
Match_columns 307
No_of_seqs 26 out of 28
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15272 BBP1_C: Spindle pole 93.6 0.36 7.8E-06 44.5 8.1 14 4-17 66-79 (196)
2 COG2433 Uncharacterized conser 92.6 0.74 1.6E-05 48.8 9.6 78 32-109 425-515 (652)
3 PRK10884 SH3 domain-containing 92.0 0.96 2.1E-05 41.4 8.5 63 6-69 96-158 (206)
4 PF00038 Filament: Intermediat 87.9 3.7 8.1E-05 37.8 9.0 56 47-106 252-307 (312)
5 PF11559 ADIP: Afadin- and alp 87.9 7.3 0.00016 32.9 10.0 64 39-106 62-125 (151)
6 PF07798 DUF1640: Protein of u 87.8 7.4 0.00016 34.1 10.4 46 21-66 47-96 (177)
7 PLN03188 kinesin-12 family pro 87.8 3.4 7.4E-05 47.1 10.0 99 4-105 1115-1241(1320)
8 PRK10884 SH3 domain-containing 87.1 2.7 5.8E-05 38.6 7.4 68 39-106 89-156 (206)
9 smart00338 BRLZ basic region l 86.9 1.4 3E-05 32.6 4.6 36 35-70 25-60 (65)
10 PF06548 Kinesin-related: Kine 84.8 8.4 0.00018 40.0 10.3 98 5-105 346-471 (488)
11 PF00170 bZIP_1: bZIP transcri 82.7 3.2 6.9E-05 30.7 4.9 39 32-70 22-60 (64)
12 PF04420 CHD5: CHD5-like prote 82.7 3.3 7.1E-05 36.2 5.7 57 47-109 37-93 (161)
13 PF05010 TACC: Transforming ac 81.1 22 0.00047 33.0 10.6 91 1-99 88-185 (207)
14 PF14260 zf-C4pol: C4-type zin 79.9 0.37 8E-06 36.3 -1.0 16 287-302 58-73 (73)
15 PF12001 DUF3496: Domain of un 78.8 6.5 0.00014 33.5 6.0 51 59-109 9-63 (111)
16 PF10226 DUF2216: Uncharacteri 78.1 12 0.00025 35.0 7.8 72 38-109 57-145 (195)
17 TIGR03752 conj_TIGR03752 integ 76.7 11 0.00024 39.1 8.0 51 37-87 67-117 (472)
18 PRK11546 zraP zinc resistance 76.6 11 0.00024 33.3 7.0 35 24-58 42-80 (143)
19 TIGR00219 mreC rod shape-deter 76.3 3.6 7.8E-05 39.0 4.2 41 47-108 70-110 (283)
20 KOG4348 Adaptor protein CMS/SE 76.2 6.3 0.00014 41.2 6.1 57 50-106 569-625 (627)
21 PF08317 Spc7: Spc7 kinetochor 76.1 35 0.00077 32.6 10.8 47 23-69 203-249 (325)
22 PF12539 Csm1: Chromosome segr 75.8 8.1 0.00017 31.8 5.6 75 216-291 3-87 (90)
23 PF06785 UPF0242: Uncharacteri 74.6 10 0.00022 38.4 6.9 33 33-65 124-156 (401)
24 PF10186 Atg14: UV radiation r 74.6 60 0.0013 29.1 11.3 17 6-22 20-36 (302)
25 PF07716 bZIP_2: Basic region 74.3 7.8 0.00017 28.0 4.6 32 34-65 23-54 (54)
26 PF07106 TBPIP: Tat binding pr 74.3 23 0.0005 30.5 8.3 44 38-81 74-118 (169)
27 PF02183 HALZ: Homeobox associ 73.8 6.6 0.00014 28.4 4.1 30 40-69 9-38 (45)
28 COG1579 Zn-ribbon protein, pos 73.4 33 0.00072 32.6 9.7 68 39-106 41-120 (239)
29 PF00038 Filament: Intermediat 72.3 42 0.0009 31.0 10.0 104 2-109 24-144 (312)
30 PF04859 DUF641: Plant protein 72.1 6.3 0.00014 34.3 4.3 17 1-17 10-26 (131)
31 TIGR02894 DNA_bind_RsfA transc 71.4 12 0.00025 34.0 6.0 63 29-91 83-154 (161)
32 PF11559 ADIP: Afadin- and alp 69.9 67 0.0015 27.1 10.3 27 77-106 124-150 (151)
33 PF04871 Uso1_p115_C: Uso1 / p 69.3 36 0.00077 29.4 8.3 28 6-33 15-42 (136)
34 COG1340 Uncharacterized archae 69.3 44 0.00096 32.9 9.8 67 40-106 31-100 (294)
35 smart00787 Spc7 Spc7 kinetocho 69.1 53 0.0011 32.0 10.3 83 23-106 153-235 (312)
36 KOG2307 Low density lipoprotei 68.8 39 0.00084 36.5 9.9 93 17-109 42-157 (705)
37 PF10146 zf-C4H2: Zinc finger- 68.0 46 0.001 31.2 9.4 87 10-101 11-100 (230)
38 PF03962 Mnd1: Mnd1 family; I 67.5 29 0.00062 31.3 7.7 63 39-106 65-127 (188)
39 COG2433 Uncharacterized conser 67.0 27 0.00058 37.6 8.3 73 33-109 419-494 (652)
40 PRK13922 rod shape-determining 66.4 17 0.00037 33.4 6.2 42 47-110 73-114 (276)
41 PF10211 Ax_dynein_light: Axon 65.9 54 0.0012 29.5 9.1 30 39-68 123-152 (189)
42 PTZ00249 variable surface prot 65.5 5.9 0.00013 41.4 3.3 59 1-66 134-192 (516)
43 PHA02562 46 endonuclease subun 65.3 57 0.0012 32.4 9.9 18 265-282 463-480 (562)
44 KOG0995 Centromere-associated 64.1 45 0.00097 35.6 9.3 74 10-84 203-282 (581)
45 PF14197 Cep57_CLD_2: Centroso 62.9 51 0.0011 25.7 7.3 64 40-107 2-65 (69)
46 PF08317 Spc7: Spc7 kinetochor 62.5 92 0.002 29.9 10.5 73 34-106 168-240 (325)
47 PF15272 BBP1_C: Spindle pole 62.4 91 0.002 29.1 10.0 57 54-110 86-153 (196)
48 PF07989 Microtub_assoc: Micro 62.0 49 0.0011 26.1 7.1 64 41-107 5-68 (75)
49 smart00340 HALZ homeobox assoc 62.0 12 0.00026 27.6 3.4 24 41-64 10-33 (44)
50 KOG0971 Microtubule-associated 61.9 39 0.00084 38.3 8.7 58 32-89 434-500 (1243)
51 PF09311 Rab5-bind: Rabaptin-l 61.4 8.3 0.00018 34.2 3.1 71 32-106 4-74 (181)
52 TIGR02168 SMC_prok_B chromosom 60.9 1.1E+02 0.0024 32.4 11.5 14 5-18 208-221 (1179)
53 PF12808 Mto2_bdg: Micro-tubul 60.8 13 0.00029 27.9 3.6 25 38-62 24-48 (52)
54 KOG0977 Nuclear envelope prote 60.6 44 0.00096 35.3 8.5 70 36-109 162-235 (546)
55 PF06005 DUF904: Protein of un 60.1 29 0.00062 27.3 5.5 25 38-62 13-37 (72)
56 PF04899 MbeD_MobD: MbeD/MobD 60.1 36 0.00078 26.9 6.0 52 14-65 3-57 (70)
57 PF05103 DivIVA: DivIVA protei 59.9 12 0.00027 30.1 3.6 35 36-70 25-59 (131)
58 PRK11637 AmiB activator; Provi 59.5 86 0.0019 30.9 9.9 11 92-102 243-253 (428)
59 PF14169 YdjO: Cold-inducible 59.0 3.2 7E-05 32.0 0.1 17 281-297 27-44 (59)
60 KOG3436 60S ribosomal protein 58.2 7.4 0.00016 33.9 2.1 29 47-75 8-37 (123)
61 KOG0250 DNA repair protein RAD 57.1 59 0.0013 37.0 9.1 78 28-105 322-417 (1074)
62 PRK03918 chromosome segregatio 57.1 1.2E+02 0.0025 32.1 10.9 29 247-279 769-797 (880)
63 TIGR02894 DNA_bind_RsfA transc 55.9 28 0.00061 31.6 5.5 18 88-105 117-134 (161)
64 PF04156 IncA: IncA protein; 55.3 1.1E+02 0.0024 26.4 8.9 19 49-67 115-133 (191)
65 PF14662 CCDC155: Coiled-coil 55.3 65 0.0014 30.1 7.8 32 38-69 24-55 (193)
66 PRK03918 chromosome segregatio 55.3 1.5E+02 0.0032 31.3 11.3 12 5-16 160-171 (880)
67 COG1579 Zn-ribbon protein, pos 54.8 64 0.0014 30.7 7.9 15 48-62 108-122 (239)
68 PF02183 HALZ: Homeobox associ 54.1 26 0.00056 25.3 4.0 27 41-67 17-43 (45)
69 PF14662 CCDC155: Coiled-coil 54.0 1E+02 0.0023 28.8 8.9 26 33-58 57-82 (193)
70 PF11932 DUF3450: Protein of u 53.0 1.5E+02 0.0033 27.1 9.9 33 38-70 37-69 (251)
71 COG4980 GvpP Gas vesicle prote 51.2 86 0.0019 27.0 7.4 71 32-105 35-106 (115)
72 PF15619 Lebercilin: Ciliary p 51.1 1.4E+02 0.003 27.3 9.2 30 79-108 154-190 (194)
73 KOG4571 Activating transcripti 51.0 18 0.00039 35.6 3.7 29 39-67 251-279 (294)
74 TIGR03752 conj_TIGR03752 integ 50.7 94 0.002 32.5 8.9 70 34-106 68-140 (472)
75 COG3879 Uncharacterized protei 50.6 48 0.001 31.9 6.3 53 47-106 54-106 (247)
76 KOG3119 Basic region leucine z 50.3 39 0.00085 32.0 5.7 44 26-70 206-249 (269)
77 PF05483 SCP-1: Synaptonemal c 50.0 96 0.0021 34.2 9.1 65 43-107 608-686 (786)
78 PRK15422 septal ring assembly 48.7 55 0.0012 26.8 5.5 46 37-82 12-57 (79)
79 PF05791 Bacillus_HBL: Bacillu 48.6 1.4E+02 0.0031 26.5 8.7 13 33-45 88-100 (184)
80 TIGR02169 SMC_prok_A chromosom 48.3 2E+02 0.0044 30.8 11.1 15 215-229 535-549 (1164)
81 KOG4005 Transcription factor X 48.1 79 0.0017 31.0 7.4 17 267-283 253-269 (292)
82 PF07407 Seadorna_VP6: Seadorn 48.1 37 0.00079 34.6 5.4 23 47-69 36-58 (420)
83 PF12325 TMF_TATA_bd: TATA ele 47.9 95 0.002 26.6 7.1 17 90-106 97-113 (120)
84 PF10211 Ax_dynein_light: Axon 47.9 2.1E+02 0.0046 25.8 11.2 59 43-104 120-178 (189)
85 KOG0804 Cytoplasmic Zn-finger 47.1 2.8E+02 0.0061 29.3 11.5 16 91-106 430-445 (493)
86 PRK11546 zraP zinc resistance 46.7 35 0.00076 30.3 4.5 15 3-17 54-68 (143)
87 PF06632 XRCC4: DNA double-str 46.4 1.1E+02 0.0025 30.3 8.4 34 36-69 137-170 (342)
88 PRK11637 AmiB activator; Provi 46.3 2.2E+02 0.0048 28.1 10.4 10 226-235 331-340 (428)
89 PF07334 IFP_35_N: Interferon- 46.3 16 0.00034 29.5 2.1 19 44-62 1-19 (76)
90 PF06148 COG2: COG (conserved 46.2 35 0.00076 28.3 4.3 56 25-81 49-107 (133)
91 smart00787 Spc7 Spc7 kinetocho 45.8 2.8E+02 0.006 27.1 10.8 54 4-62 145-198 (312)
92 PHA02562 46 endonuclease subun 45.8 1.6E+02 0.0034 29.3 9.3 32 40-71 217-248 (562)
93 KOG4674 Uncharacterized conser 45.7 1.6E+02 0.0036 35.5 10.7 77 22-98 784-860 (1822)
94 PF08700 Vps51: Vps51/Vps67; 45.4 1.2E+02 0.0025 22.9 6.7 36 33-69 49-84 (87)
95 KOG4196 bZIP transcription fac 45.3 33 0.00071 30.5 4.1 25 47-71 78-102 (135)
96 PRK13923 putative spore coat p 45.2 41 0.0009 30.7 4.8 50 48-97 109-160 (170)
97 PRK14872 rod shape-determining 44.7 39 0.00086 33.6 5.0 20 47-66 61-80 (337)
98 KOG3850 Predicted membrane pro 44.5 3.9E+02 0.0085 27.9 13.1 73 38-116 35-128 (455)
99 PF00761 Polyoma_coat2: Polyom 44.2 7.8 0.00017 38.4 0.1 21 265-285 274-295 (322)
100 COG4026 Uncharacterized protei 44.1 1.8E+02 0.0039 28.5 9.1 53 47-110 153-205 (290)
101 PF05377 FlaC_arch: Flagella a 44.0 1E+02 0.0023 23.6 6.1 28 35-62 6-33 (55)
102 PF14931 IFT20: Intraflagellar 43.6 2.1E+02 0.0045 24.5 8.8 75 33-109 35-114 (120)
103 KOG2129 Uncharacterized conser 43.2 1.1E+02 0.0024 32.2 7.9 70 39-108 249-328 (552)
104 PF08614 ATG16: Autophagy prot 42.7 48 0.001 29.4 4.8 57 50-106 88-147 (194)
105 PF09753 Use1: Membrane fusion 42.5 1.8E+02 0.004 26.7 8.7 16 95-110 59-74 (251)
106 PF03961 DUF342: Protein of un 42.3 1.3E+02 0.0028 30.0 8.2 35 73-107 373-407 (451)
107 PF10186 Atg14: UV radiation r 42.1 1.8E+02 0.0039 26.1 8.4 18 211-229 202-219 (302)
108 PF07813 LTXXQ: LTXXQ motif fa 41.9 37 0.00081 25.6 3.5 29 25-53 14-42 (100)
109 PF05030 SSXT: SSXT protein (N 41.7 76 0.0016 25.0 5.2 37 42-84 8-44 (65)
110 KOG0995 Centromere-associated 40.9 1.7E+02 0.0038 31.4 9.1 24 31-54 275-298 (581)
111 PF04849 HAP1_N: HAP1 N-termin 40.7 1.6E+02 0.0034 29.3 8.3 28 40-67 164-191 (306)
112 PF04201 TPD52: Tumour protein 40.7 40 0.00088 30.6 4.0 21 71-91 53-77 (162)
113 PF11932 DUF3450: Protein of u 40.5 2.9E+02 0.0062 25.3 9.6 37 33-69 53-89 (251)
114 KOG2129 Uncharacterized conser 40.1 3.9E+02 0.0083 28.4 11.2 43 4-46 159-215 (552)
115 PF12709 Kinetocho_Slk19: Cent 40.1 79 0.0017 26.2 5.3 32 42-73 48-79 (87)
116 PF13863 DUF4200: Domain of un 39.8 2E+02 0.0043 23.2 9.4 84 19-106 8-91 (126)
117 PF10473 CENP-F_leu_zip: Leuci 39.8 1.8E+02 0.004 25.6 7.9 36 41-76 50-85 (140)
118 KOG0957 PHD finger protein [Ge 39.5 1.8E+02 0.0039 31.4 8.9 86 30-123 436-531 (707)
119 KOG2991 Splicing regulator [RN 39.2 2.3E+02 0.0049 28.3 9.0 81 30-110 87-191 (330)
120 PF04394 DUF536: Protein of un 38.9 46 0.001 24.3 3.4 24 77-100 19-42 (45)
121 PRK00888 ftsB cell division pr 38.5 66 0.0014 26.6 4.7 22 41-62 39-60 (105)
122 PF13851 GAS: Growth-arrest sp 38.5 2.5E+02 0.0055 25.5 8.8 43 28-70 33-75 (201)
123 TIGR02449 conserved hypothetic 38.1 1.3E+02 0.0028 23.6 6.0 31 39-69 7-40 (65)
124 PF07200 Mod_r: Modifier of ru 37.4 69 0.0015 26.9 4.8 40 38-77 29-68 (150)
125 PF03980 Nnf1: Nnf1 ; InterPr 37.3 66 0.0014 25.9 4.4 18 18-35 34-51 (109)
126 TIGR00606 rad50 rad50. This fa 36.6 3.3E+02 0.0073 31.0 11.1 42 39-80 884-925 (1311)
127 PF15397 DUF4618: Domain of un 36.4 1.3E+02 0.0028 29.1 6.9 47 31-77 69-115 (258)
128 PRK13182 racA polar chromosome 35.8 1.1E+02 0.0024 27.5 6.1 55 43-106 85-139 (175)
129 PRK02224 chromosome segregatio 35.8 3.4E+02 0.0073 28.9 10.4 36 34-69 204-239 (880)
130 PF09728 Taxilin: Myosin-like 35.4 3E+02 0.0066 26.7 9.3 70 33-106 224-296 (309)
131 PF04977 DivIC: Septum formati 34.8 1.5E+02 0.0032 21.7 5.7 17 44-60 32-48 (80)
132 KOG3156 Uncharacterized membra 34.6 2.7E+02 0.0057 26.7 8.5 43 24-66 93-139 (220)
133 PF10146 zf-C4H2: Zinc finger- 34.4 3E+02 0.0065 25.9 8.8 73 36-108 25-100 (230)
134 KOG4001 Axonemal dynein light 34.2 2.2E+02 0.0047 27.6 7.9 78 3-103 163-242 (259)
135 PF10475 DUF2450: Protein of u 34.0 4E+02 0.0087 25.0 10.1 76 33-109 58-142 (291)
136 KOG0612 Rho-associated, coiled 33.9 2.7E+02 0.0058 32.7 9.7 30 40-69 498-527 (1317)
137 PF09726 Macoilin: Transmembra 33.9 2E+02 0.0044 31.2 8.5 57 24-84 509-575 (697)
138 PF04065 Not3: Not1 N-terminal 33.6 1.6E+02 0.0034 27.9 6.9 69 13-84 95-172 (233)
139 PRK09039 hypothetical protein; 32.6 3.7E+02 0.008 26.4 9.5 56 47-106 127-182 (343)
140 PF04977 DivIC: Septum formati 32.5 71 0.0015 23.5 3.6 31 43-73 24-54 (80)
141 PRK00888 ftsB cell division pr 32.5 1.3E+02 0.0029 24.8 5.6 16 88-103 47-62 (105)
142 PF10174 Cast: RIM-binding pro 32.3 3.3E+02 0.007 30.2 9.8 50 8-59 303-352 (775)
143 TIGR01843 type_I_hlyD type I s 32.3 4.3E+02 0.0093 24.8 10.1 13 7-19 179-191 (423)
144 PRK13169 DNA replication intia 32.2 1.9E+02 0.0042 24.5 6.6 15 95-109 69-83 (110)
145 TIGR00606 rad50 rad50. This fa 32.2 5E+02 0.011 29.7 11.6 20 7-26 733-752 (1311)
146 PF06657 Cep57_MT_bd: Centroso 32.0 2E+02 0.0042 22.9 6.2 57 34-110 15-71 (79)
147 PF09730 BicD: Microtubule-ass 31.7 2.8E+02 0.006 30.5 9.1 68 39-106 44-114 (717)
148 PF11593 Med3: Mediator comple 31.6 1.8E+02 0.004 29.7 7.3 72 37-108 23-98 (379)
149 PF10212 TTKRSYEDQ: Predicted 31.1 5.1E+02 0.011 27.6 10.7 60 43-102 455-514 (518)
150 PF06810 Phage_GP20: Phage min 31.0 1.4E+02 0.0029 26.3 5.7 28 36-63 34-64 (155)
151 PF06156 DUF972: Protein of un 30.7 1E+02 0.0022 25.9 4.6 16 94-109 71-86 (107)
152 PF07888 CALCOCO1: Calcium bin 30.5 2.5E+02 0.0055 30.0 8.4 12 93-104 238-249 (546)
153 PF08580 KAR9: Yeast cortical 30.4 4.6E+02 0.01 28.4 10.5 97 4-108 193-298 (683)
154 cd07599 BAR_Rvs167p The Bin/Am 30.3 2.3E+02 0.0049 25.3 7.1 56 5-60 126-184 (216)
155 PF07106 TBPIP: Tat binding pr 29.9 1.6E+02 0.0035 25.3 5.9 40 27-66 70-109 (169)
156 PF06160 EzrA: Septation ring 29.7 3.7E+02 0.0079 28.0 9.3 67 2-69 59-127 (560)
157 COG1340 Uncharacterized archae 29.6 2.7E+02 0.0059 27.6 8.0 61 46-106 58-124 (294)
158 PF00042 Globin: Globin plant 29.6 1.8E+02 0.004 22.0 5.6 61 3-65 22-90 (110)
159 PF02841 GBP_C: Guanylate-bind 29.1 4.7E+02 0.01 24.7 9.3 26 45-70 231-256 (297)
160 KOG1318 Helix loop helix trans 29.0 1.5E+02 0.0032 30.5 6.3 49 36-106 273-321 (411)
161 COG5185 HEC1 Protein involved 28.8 4.7E+02 0.01 28.2 9.9 41 22-62 250-290 (622)
162 COG1196 Smc Chromosome segrega 28.7 5.4E+02 0.012 29.1 11.0 81 216-303 530-614 (1163)
163 PRK02224 chromosome segregatio 28.5 4.3E+02 0.0093 28.2 9.8 32 39-70 202-233 (880)
164 PF06008 Laminin_I: Laminin Do 28.4 4.8E+02 0.01 24.1 9.9 46 13-58 137-182 (264)
165 cd01040 globin Globins are hem 28.1 2.9E+02 0.0062 21.5 8.9 86 3-91 25-116 (140)
166 PF10234 Cluap1: Clusterin-ass 27.6 3.1E+02 0.0068 26.6 7.9 51 34-84 160-213 (267)
167 PF10805 DUF2730: Protein of u 27.5 1.5E+02 0.0033 24.4 5.1 55 35-90 48-104 (106)
168 PRK14127 cell division protein 27.4 1.1E+02 0.0023 26.1 4.3 36 24-62 21-56 (109)
169 PF00170 bZIP_1: bZIP transcri 27.2 2.5E+02 0.0053 20.6 5.7 24 42-65 25-48 (64)
170 KOG4343 bZIP transcription fac 27.1 1.6E+02 0.0034 31.9 6.2 54 5-63 276-329 (655)
171 PRK04778 septation ring format 27.1 6.5E+02 0.014 26.1 10.6 37 33-69 314-360 (569)
172 PF04728 LPP: Lipoprotein leuc 27.0 1.2E+02 0.0025 23.4 4.0 27 45-71 5-31 (56)
173 PF15205 PLAC9: Placenta-speci 26.9 1E+02 0.0022 24.9 3.8 25 38-62 27-55 (74)
174 PF08912 Rho_Binding: Rho Bind 26.8 98 0.0021 24.7 3.7 23 45-67 5-27 (69)
175 PF05622 HOOK: HOOK protein; 26.7 21 0.00046 37.5 0.0 38 45-83 334-371 (713)
176 TIGR03545 conserved hypothetic 26.7 2.9E+02 0.0062 29.2 8.1 64 10-77 198-264 (555)
177 PF05266 DUF724: Protein of un 26.6 5E+02 0.011 23.7 8.8 11 93-103 156-166 (190)
178 TIGR01069 mutS2 MutS2 family p 26.4 2.4E+02 0.0052 30.7 7.7 13 274-286 734-746 (771)
179 PF12709 Kinetocho_Slk19: Cent 26.3 3.2E+02 0.0069 22.7 6.7 62 4-68 20-81 (87)
180 PF13870 DUF4201: Domain of un 26.3 3.1E+02 0.0068 23.8 7.1 59 47-105 46-107 (177)
181 PF13118 DUF3972: Protein of u 26.2 2.7E+02 0.0059 24.5 6.6 26 36-61 78-103 (126)
182 PF14661 HAUS6_N: HAUS augmin- 26.1 5E+02 0.011 24.0 8.8 38 29-66 164-201 (247)
183 PF14197 Cep57_CLD_2: Centroso 26.1 2.4E+02 0.0051 22.0 5.6 13 46-58 50-62 (69)
184 PRK09039 hypothetical protein; 25.6 3.3E+02 0.0071 26.7 7.8 43 42-84 136-181 (343)
185 PF14612 Ino80_Iec3: IEC3 subu 25.6 1.9E+02 0.0041 27.8 6.0 55 5-64 1-55 (232)
186 PRK10361 DNA recombination pro 25.6 4.8E+02 0.01 27.4 9.3 77 30-106 86-182 (475)
187 PF06818 Fez1: Fez1; InterPro 25.5 1.6E+02 0.0035 27.6 5.4 24 75-98 173-200 (202)
188 PF09787 Golgin_A5: Golgin sub 25.5 5.4E+02 0.012 26.4 9.6 36 74-109 336-382 (511)
189 cd07591 BAR_Rvs161p The Bin/Am 25.5 2.9E+02 0.0062 25.5 7.0 52 5-57 125-176 (224)
190 KOG0161 Myosin class II heavy 25.4 6.3E+02 0.014 31.1 11.2 104 6-110 1061-1174(1930)
191 cd07588 BAR_Amphiphysin The Bi 25.3 1.6E+02 0.0035 27.2 5.4 72 5-91 120-198 (211)
192 PHA00728 hypothetical protein 25.1 91 0.002 27.9 3.6 19 44-62 6-24 (151)
193 PF07352 Phage_Mu_Gam: Bacteri 25.1 2.3E+02 0.005 24.2 6.0 55 54-111 7-61 (149)
194 KOG0978 E3 ubiquitin ligase in 25.1 5.6E+02 0.012 28.3 9.9 35 74-108 586-620 (698)
195 KOG3227 Calcium-responsive tra 25.0 1.2E+02 0.0027 29.0 4.6 36 43-84 23-58 (231)
196 PF12889 DUF3829: Protein of u 25.0 4.8E+02 0.01 23.4 8.2 46 5-50 134-179 (276)
197 PF05130 FlgN: FlgN protein; 24.8 3.2E+02 0.0069 21.4 6.3 47 3-49 19-65 (143)
198 COG1196 Smc Chromosome segrega 24.7 6.7E+02 0.014 28.4 10.8 17 216-232 604-620 (1163)
199 PF06305 DUF1049: Protein of u 24.6 81 0.0017 22.9 2.7 24 47-70 45-68 (68)
200 KOG0933 Structural maintenance 24.6 6.3E+02 0.014 29.5 10.5 65 38-106 401-465 (1174)
201 KOG4421 Uncharacterized conser 24.5 3.6E+02 0.0077 28.4 8.1 79 1-80 540-621 (637)
202 TIGR02209 ftsL_broad cell divi 24.5 1.6E+02 0.0035 22.2 4.5 25 38-62 33-57 (85)
203 PF15254 CCDC14: Coiled-coil d 24.5 2.5E+02 0.0054 31.5 7.3 64 43-106 462-546 (861)
204 PF13801 Metal_resist: Heavy-m 24.4 3.1E+02 0.0068 20.7 9.2 39 23-61 39-77 (125)
205 PF09304 Cortex-I_coil: Cortex 24.3 3.3E+02 0.0071 23.5 6.6 36 41-76 42-77 (107)
206 PF06160 EzrA: Septation ring 24.1 7.9E+02 0.017 25.6 10.6 75 5-79 138-230 (560)
207 PRK11020 hypothetical protein; 24.0 2.2E+02 0.0047 25.0 5.5 57 47-109 2-58 (118)
208 PF12128 DUF3584: Protein of u 24.0 3.7E+02 0.008 30.5 8.8 79 28-106 791-872 (1201)
209 PF02388 FemAB: FemAB family; 23.9 2.6E+02 0.0057 27.6 6.8 62 34-110 240-301 (406)
210 COG0419 SbcC ATPase involved i 23.8 7E+02 0.015 27.3 10.5 17 2-18 170-186 (908)
211 PF11336 DUF3138: Protein of u 23.4 1.8E+02 0.0038 30.8 5.7 28 42-69 24-51 (514)
212 PRK00409 recombination and DNA 23.4 3.5E+02 0.0077 29.5 8.2 13 274-286 745-757 (782)
213 PF15290 Syntaphilin: Golgi-lo 23.2 3E+02 0.0065 27.5 6.9 73 17-96 74-163 (305)
214 PF01763 Herpes_UL6: Herpesvir 23.1 1.3E+02 0.0028 32.1 4.8 34 36-69 370-403 (557)
215 PF02050 FliJ: Flagellar FliJ 23.1 3.3E+02 0.0072 20.5 9.7 43 25-67 41-83 (123)
216 TIGR00634 recN DNA repair prot 23.0 4.1E+02 0.0088 27.4 8.2 19 12-30 313-331 (563)
217 PF11382 DUF3186: Protein of u 23.0 1.1E+02 0.0024 29.5 4.0 30 37-66 33-62 (308)
218 cd05899 IgV_TCR_beta Immunoglo 22.8 2.1E+02 0.0045 22.2 4.9 40 231-272 9-48 (110)
219 PF07200 Mod_r: Modifier of ru 22.7 3.7E+02 0.008 22.5 6.7 78 23-106 9-86 (150)
220 TIGR02169 SMC_prok_A chromosom 22.6 9.7E+02 0.021 25.8 11.1 13 5-17 206-218 (1164)
221 PRK12705 hypothetical protein; 22.6 9.2E+02 0.02 25.4 10.8 23 220-242 223-245 (508)
222 KOG4572 Predicted DNA-binding 22.6 5.8E+02 0.013 29.5 9.6 28 79-106 1079-1109(1424)
223 KOG0161 Myosin class II heavy 22.4 5E+02 0.011 31.9 9.6 62 47-108 954-1025(1930)
224 TIGR03185 DNA_S_dndD DNA sulfu 22.3 7.8E+02 0.017 25.8 10.2 16 90-105 450-465 (650)
225 PF05834 Lycopene_cycl: Lycope 22.0 24 0.00051 33.7 -0.7 11 242-252 265-275 (374)
226 PF08537 NBP1: Fungal Nap bind 21.9 1.8E+02 0.0039 29.2 5.3 55 43-99 175-229 (323)
227 PRK10636 putative ABC transpor 21.8 6.7E+02 0.014 26.3 9.6 68 39-106 559-629 (638)
228 PTZ00419 valyl-tRNA synthetase 21.7 2.5E+02 0.0054 31.2 6.8 59 48-106 927-988 (995)
229 PRK14140 heat shock protein Gr 21.5 2.2E+02 0.0048 26.2 5.4 50 39-92 33-82 (191)
230 PF06705 SF-assemblin: SF-asse 21.4 6.4E+02 0.014 23.1 11.1 15 3-17 34-48 (247)
231 PF05529 Bap31: B-cell recepto 21.4 4.7E+02 0.01 22.9 7.3 18 90-107 155-172 (192)
232 PF06204 CBM_X: Putative carbo 21.3 50 0.0011 25.5 1.1 22 234-255 32-53 (66)
233 PF15254 CCDC14: Coiled-coil d 21.3 2.4E+02 0.0051 31.7 6.4 60 45-104 450-513 (861)
234 TIGR02231 conserved hypothetic 21.2 5.3E+02 0.012 26.1 8.6 37 74-110 137-173 (525)
235 PHA02620 VP3; Provisional 21.1 31 0.00068 34.7 -0.1 21 265-285 276-297 (353)
236 PRK05729 valS valyl-tRNA synth 21.0 1.7E+02 0.0037 31.8 5.3 59 48-106 809-870 (874)
237 PRK01156 chromosome segregatio 21.0 1.1E+03 0.023 25.5 11.4 14 4-17 167-180 (895)
238 KOG3366 Mitochondrial F1F0-ATP 20.9 2.7E+02 0.0059 25.7 5.8 56 5-61 68-123 (172)
239 PF12711 Kinesin-relat_1: Kine 20.8 3.2E+02 0.0068 22.6 5.6 16 91-106 53-68 (86)
240 PRK14127 cell division protein 20.8 2.8E+02 0.0061 23.6 5.5 28 40-67 41-68 (109)
241 PRK11147 ABC transporter ATPas 20.7 4.6E+02 0.01 27.3 8.1 67 39-106 565-633 (635)
242 KOG3819 Uncharacterized conser 20.7 2.7E+02 0.0059 29.5 6.4 36 71-106 135-170 (513)
243 COG1792 MreC Cell shape-determ 20.5 3.8E+02 0.0082 25.7 7.0 42 47-110 70-111 (284)
244 PF09798 LCD1: DNA damage chec 20.5 86 0.0019 33.9 3.0 162 62-253 2-165 (654)
245 smart00338 BRLZ basic region l 20.4 2.1E+02 0.0046 21.0 4.3 33 37-69 20-52 (65)
246 PF05791 Bacillus_HBL: Bacillu 20.4 6.2E+02 0.013 22.5 8.7 79 27-105 101-179 (184)
247 PRK13729 conjugal transfer pil 20.3 2E+02 0.0043 30.2 5.4 18 88-105 103-120 (475)
248 KOG4571 Activating transcripti 20.3 2.7E+02 0.006 27.6 6.1 51 40-108 238-288 (294)
249 KOG0992 Uncharacterized conser 20.2 3.7E+02 0.008 29.1 7.3 25 217-241 476-500 (613)
250 PF09787 Golgin_A5: Golgin sub 20.2 3.8E+02 0.0082 27.5 7.3 23 28-50 231-260 (511)
251 KOG0709 CREB/ATF family transc 20.2 1.5E+02 0.0032 31.2 4.4 55 28-86 264-318 (472)
252 PF14988 DUF4515: Domain of un 20.2 6.3E+02 0.014 23.3 8.1 80 10-89 18-117 (206)
253 PF10498 IFT57: Intra-flagella 20.1 8.8E+02 0.019 24.3 9.8 37 75-111 287-323 (359)
No 1
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=93.62 E-value=0.36 Score=44.47 Aligned_cols=14 Identities=64% Similarity=0.992 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhh
Q 021778 4 LYKKLYDKYDKLKK 17 (307)
Q Consensus 4 Ly~KLydKYt~LKk 17 (307)
-|-|||.||..||+
T Consensus 66 nYYkL~~KY~~LK~ 79 (196)
T PF15272_consen 66 NYYKLYSKYQELKK 79 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 37899999999999
No 2
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.74 Score=48.81 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc-------------ccchHHHHHHHHHHHHHHhhhhhhHHHH
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR-------------STSNEQCLHYQKLLMEENQKNKALSEEV 98 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR-------------s~kd~q~~~~QkLLmEE~~Knk~L~eEV 98 (307)
.+..+-+...++-+++|+.++++|...+.+|+++++++| ..+|......++.|+|+..+-++|..++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888888888888888888875 4578888899999999999999999999
Q ss_pred HHHHHHHHhcC
Q 021778 99 ETLQKLLQEGT 109 (307)
Q Consensus 99 ~kLq~Ll~E~~ 109 (307)
.+|+++..--.
T Consensus 505 ~~l~k~~~lE~ 515 (652)
T COG2433 505 AELRKMRKLEL 515 (652)
T ss_pred HHHHHHHhhhh
Confidence 99998877333
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.96 E-value=0.96 Score=41.44 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 6 KKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 6 ~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.+|=...++|+ .+|.++++-...+-....+-+.+++..|+.|+.+|++|.+++..+++|+..+
T Consensus 96 p~le~el~~l~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 96 PDLENQVKTLT-DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665 4555555555566666667777788888888888888888877765555444
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.94 E-value=3.7 Score=37.79 Aligned_cols=56 Identities=34% Similarity=0.483 Sum_probs=36.1
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+..+.+.+.+.|..|..|++.+|.....++.+||.|| +- .=.|+-||-.-.+||.
T Consensus 252 ~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll-~~---K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 252 RLDEEREEYQAEIAELEEELAELREEMARQLREYQELL-DV---KLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-HH---HHhHHHHHHHHHHHHh
Confidence 33344444444455666666777777777777777743 32 2357888888888886
No 5
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.89 E-value=7.3 Score=32.89 Aligned_cols=64 Identities=30% Similarity=0.330 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.....=+++|...+++|.+++.++..+++ ....+....++-+-....+.+...+|+.||+..++
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555554 44566777788888888889999999999997776
No 6
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.84 E-value=7.4 Score=34.14 Aligned_cols=46 Identities=28% Similarity=0.334 Sum_probs=33.5
Q ss_pred CcchhhhHHHHhhHHHHHHHH----HHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 21 SELDNLNKEQELKFTTYVNAA----DKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 21 sd~d~lnkeQE~kf~~~~sAa----eelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
.|++.....+.+.|-++.+.+ +.-+..|+.++++|..++..|+.+|
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888877766 3445678888888888877776655
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=87.81 E-value=3.4 Score=47.08 Aligned_cols=99 Identities=27% Similarity=0.412 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhh--hhhcCc-chhhhHH--------HHhhHHHHHHHH--------HHHHHHHHhhhHHHHHHHHhhhh
Q 021778 4 LYKKLYDKYDKLK--KKKFSE-LDNLNKE--------QELKFTTYVNAA--------DKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 4 Ly~KLydKYt~LK--krKlsd-~d~lnke--------QE~kf~~~~sAa--------eelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
=|+-|-+||..|= -|++-+ ++++.+- .|.+|.+.+.|= |.-.++||+||..|..| ||.
T Consensus 1115 ~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q---lrd 1191 (1320)
T PLN03188 1115 QYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ---LRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---Hhh
Confidence 3888999999884 445544 4445443 467888776542 33456899999999999 665
Q ss_pred hhhhh--------c-ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 65 EVDSI--------R-STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 65 Elasi--------R-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
-..-| | -.-++-+.-+|+-.|+=.|-|..+..+|+|||+=+
T Consensus 1192 taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1192 TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 2 34456667788888888888888888888887655
No 8
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.06 E-value=2.7 Score=38.57 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
--+.+.+..|+.|.+.|.+++++++++.....+...++++...+..-+=...|+.|.+|+..+++=++
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777766666666666666666655555667777777777766544
No 9
>smart00338 BRLZ basic region leucin zipper.
Probab=86.87 E-value=1.4 Score=32.58 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
..|+...+.-+++|..+|..|..+|..|+.|++.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999877777665
No 10
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=84.83 E-value=8.4 Score=39.98 Aligned_cols=98 Identities=27% Similarity=0.442 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhh--hhcCc-chhhhHH--------HHhhHHHHHHH------H--HHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 5 YKKLYDKYDKLKK--KKFSE-LDNLNKE--------QELKFTTYVNA------A--DKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 5 y~KLydKYt~LKk--rKlsd-~d~lnke--------QE~kf~~~~sA------a--eelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
|+-|-+||..|=. |++-+ ++++.+. -+.+|.+-..| + +.-...||+||..|..| ||.-
T Consensus 346 YadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~Q---LrDT 422 (488)
T PF06548_consen 346 YADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQ---LRDT 422 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHhH
Confidence 8888899998844 44443 3334332 36788887655 1 23345889999999999 5554
Q ss_pred hhhh--------c-ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 66 VDSI--------R-STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 66 lasi--------R-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
..-| | -.-++-..-+|+-+|.=.|.|..+.-+|+||++=+
T Consensus 423 AEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 423 AEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2 33455566678888887788888888888877643
No 11
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.75 E-value=3.2 Score=30.68 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+...++...++-+..|..+|+.|..++..|..+++.++
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999988877776654
No 12
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=82.73 E-value=3.3 Score=36.17 Aligned_cols=57 Identities=30% Similarity=0.432 Sum_probs=43.8
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
..-.+..+|+.++.+|+.|+.+| ...||.|+|=|+ +||=..+++|++++++-+....
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl----~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKL----NRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHH----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777787888777 344699999997 8888889999999998887544
No 13
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.08 E-value=22 Score=33.00 Aligned_cols=91 Identities=24% Similarity=0.430 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHH-------HHHHhhhhhhhhhcccc
Q 021778 1 MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLC-------AQVNNLKSEVDSIRSTS 73 (307)
Q Consensus 1 ME~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~-------~qv~~Lr~ElasiRs~k 73 (307)
||.-|+.||.+|.++|.- ++++ +.-|..++ ..+++++..|+.+.++.. ++++.--.|++.+|+.-
T Consensus 88 ~E~sfsdl~~ryek~K~v----i~~~-k~NEE~Lk---k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~ 159 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEV----IEGY-KKNEETLK---KCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH 159 (207)
T ss_pred HHhhHHHHHHHHHHHHHH----HHHH-HHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999864 2222 22333333 333344444433333322 23334556788888888
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021778 74 NEQCLHYQKLLMEENQKNKALSEEVE 99 (307)
Q Consensus 74 d~q~~~~QkLLmEE~~Knk~L~eEV~ 99 (307)
..+++..|-.|--+.-+...|.+.++
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888666666666665554
No 14
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta
Probab=79.90 E-value=0.37 Score=36.26 Aligned_cols=16 Identities=44% Similarity=0.987 Sum_probs=11.1
Q ss_pred hhcccCCcchHHHHhh
Q 021778 287 EIMFSTSMCPIFFERI 302 (307)
Q Consensus 287 ~I~FS~~McpvFFeRi 302 (307)
.|.=...-|||||+||
T Consensus 58 ~~~C~s~DCpV~Y~R~ 73 (73)
T PF14260_consen 58 EIECDSLDCPVFYERV 73 (73)
T ss_pred CCcccCCCCCcceeeC
Confidence 3445666788888886
No 15
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=78.81 E-value=6.5 Score=33.53 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=40.1
Q ss_pred HHhhhhhhhhhc-ccch---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 59 VNNLKSEVDSIR-STSN---EQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 59 v~~Lr~ElasiR-s~kd---~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
+.+|.+|+.-++ +..| -+|.+|+++.++|.+-++.|+.+..|-.+-++|-.
T Consensus 9 IkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevs 63 (111)
T PF12001_consen 9 IKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVS 63 (111)
T ss_pred HHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666 3333 48999999999999999999999999888777543
No 16
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=78.08 E-value=12 Score=34.96 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh-----------c---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSI-----------R---STSNEQCLHYQKLLMEENQKNKALSEEVETLQK 103 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi-----------R---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~ 103 (307)
+...++..+-|++||++|++----|-..=+-. | +.+-++++-||+-|-+=..|-++|-.|-..|+.
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34566666677777777776533332211111 1 567789999999997777777889999888888
Q ss_pred H---HHhcC
Q 021778 104 L---LQEGT 109 (307)
Q Consensus 104 L---l~E~~ 109 (307)
| |+|..
T Consensus 137 lcl~LDeer 145 (195)
T PF10226_consen 137 LCLYLDEER 145 (195)
T ss_pred HHHHHhccc
Confidence 6 44444
No 17
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.71 E-value=11 Score=39.10 Aligned_cols=51 Identities=27% Similarity=0.221 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHH
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEE 87 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE 87 (307)
=+++++..++.|..+|+.|+++-+.||..-.+|...-++.+.-+++.+..|
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~ 117 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKE 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHH
Confidence 345566667778888888888877777766666544444444444444443
No 18
>PRK11546 zraP zinc resistance protein; Provisional
Probab=76.59 E-value=11 Score=33.31 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=24.7
Q ss_pred hhhhHHHHhhH----HHHHHHHHHHHHHHHhhhHHHHHH
Q 021778 24 DNLNKEQELKF----TTYVNAADKYIEFLRSENEKLCAQ 58 (307)
Q Consensus 24 d~lnkeQE~kf----~~~~sAaeelie~Lr~EN~~L~~q 58 (307)
..|..||-.++ .+|...+.+|.+.|..-..+|++.
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888887 667777777777777766666655
No 19
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=76.25 E-value=3.6 Score=38.96 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
+|+.||++|++++.+|+.++. . ...++..|-.+|++||.-.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~--------------~-------~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLE--------------I-------LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------H-------HHHHHHHHHHHHHHHhcCc
Confidence 578999999999755522211 1 1122577888999999854
No 20
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=76.22 E-value=6.3 Score=41.20 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 50 SENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+-.++|++||.+|+.=+.-+.-+--.++.+..+.|=||..-+--|.-||++|++-++
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 345677888888766665555555556667777777787778889999999999876
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.14 E-value=35 Score=32.64 Aligned_cols=47 Identities=13% Similarity=0.267 Sum_probs=24.8
Q ss_pred chhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 23 LDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 23 ~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
++...++.=..+.+-+.+.+.-|+.+|.+-++|..++..|..+++.+
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554455555555555555555555555555555555444444
No 22
>PF12539 Csm1: Chromosome segregation protein Csm1/Pcs1; InterPro: IPR020981 Saccharomyces cerevisiae Csm1 is part of the monopolin complex. Csm1 forms a complex with Mde4 and promotes monoorientation during meiosis []. It plays a mitotic role in DNA replication [] and is required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation []. This entry also contains the Schizosaccharomyces pombe homologue to Csm1, Pcs1. Pcs1 forms a complex with Mde4 and acts in the central kinetochore domain to clamp microtubule binding sites together[]. The two complexes (Csm1/Lrs4 and Pcs1/Mde4) contribute to the prevention of merotelic attachment [].; GO: 0005515 protein binding; PDB: 3N4S_C 3N4R_B 3N7N_A 3N4X_B.
Probab=75.79 E-value=8.1 Score=31.80 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCccccccCCCceEEEEEeecC---CceeEEEeeecCCCccceeeEeeecchhhhh-------hhhhhhh
Q 021778 216 LFQALIEYLLGMKLSPYHESEGRCVSALHQST---GYSFSLTWVKSKDGEEFELLYRVLSLGTLER-------VALGWMM 285 (307)
Q Consensus 216 ~fq~L~e~llgMKlS~~~~~e~~cisa~H~sS---GysFsLTwv~~~~gee~EllY~~~SLGTleR-------vApeWMR 285 (307)
+.--|++.|-|-++--..+++.--+--+-|++ -..|-|...+... +++|..|.+.=..-.++ +-|+.|.
T Consensus 3 ~~~dl~~~LTGl~V~~~~ed~~~~~FDc~Qtg~nGtl~ykL~i~~~~~-~~~e~~Y~P~l~~~~d~~~~~L~~~LPdYL~ 81 (90)
T PF12539_consen 3 IKEDLYEDLTGLIVRNVKEDDSGLWFDCIQTGRNGTLHYKLGIDKDFS-EDTEFTYVPLLDENRDRNLKELIKILPDYLC 81 (90)
T ss_dssp HHHHHHHHHHSEEEEEEEEESSCEEEEEEEE----EEEEEEEEE-STT-T--EEEEEEE-SSS-HHHHHHHHHHS-GGGG
T ss_pred hHHHHHHHccCeEEEEEEECCCCcEEEEEEcCCCcEEEEEEEeccCCC-CCceEEEEeccCcccchhHHHHHHHCcHhhE
Confidence 34568899999888765555544333333332 3568888777766 67899999987765555 7899999
Q ss_pred hhhccc
Q 021778 286 DEIMFS 291 (307)
Q Consensus 286 e~I~FS 291 (307)
++|+|-
T Consensus 82 d~itFp 87 (90)
T PF12539_consen 82 DEITFP 87 (90)
T ss_dssp S-EEEE
T ss_pred EEEEec
Confidence 999995
No 23
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.63 E-value=10 Score=38.37 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
+..+-.+.+|++|.||+.||..|..|++.+..|
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556778999999999999999998777443
No 24
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.60 E-value=60 Score=29.13 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhhcCc
Q 021778 6 KKLYDKYDKLKKKKFSE 22 (307)
Q Consensus 6 ~KLydKYt~LKkrKlsd 22 (307)
.+||++...|...+...
T Consensus 20 ~~L~~~~~~l~~~~~~~ 36 (302)
T PF10186_consen 20 NRLLELRSELQQLKEEN 36 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35777777666655444
No 25
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.31 E-value=7.8 Score=27.99 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
=..+...++.-+..|..+|..|..++..|+.|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677778888899999999999988777544
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.28 E-value=23 Score=30.51 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccc-hHHHHHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTS-NEQCLHYQ 81 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~k-d~q~~~~Q 81 (307)
..+++.-|..|+.+...|...+..|+.||+.+++.. .+++...-
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i 118 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEI 118 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 556666799999999999999999999999998554 44454333
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.76 E-value=6.6 Score=28.38 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
+.+..-+.|+.+|+.|..++..|+.|+..+
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666655555555444443
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.37 E-value=33 Score=32.60 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc------------ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIR------------STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR------------s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+++.+-++.++-+.+.|..||..+.++++.+| ++.+.++..++..+=--++.-..|+.|+..|...+.
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555566666666666666666665 566677777777775555666666666666665555
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.34 E-value=42 Score=31.01 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc----------c
Q 021778 2 ESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR----------S 71 (307)
Q Consensus 2 E~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR----------s 71 (307)
|.=+++|=.+.+.++.++-..... -...|..-+..+...|..+-.|+.+|..++.+|+.++..+| .
T Consensus 24 E~~N~~Le~~i~~~~~~~~~~~~~----~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 24 EQENKRLESEIEELREKKGEEVSR----IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHH---------HH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHhcccccCcc----cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666665333222 23445666667777777777888888777777777776654 5
Q ss_pred cchHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHhcC
Q 021778 72 TSNEQCLHYQKLLMEENQK-------NKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 72 ~kd~q~~~~QkLLmEE~~K-------nk~L~eEV~kLq~Ll~E~~ 109 (307)
..+.++...++.+=+++.. -+.|.+|+.-|+.++++..
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi 144 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEI 144 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5666666667776555554 4455566666666666543
No 30
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=72.06 E-value=6.3 Score=34.29 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHhhh
Q 021778 1 MESLYKKLYDKYDKLKK 17 (307)
Q Consensus 1 ME~Ly~KLydKYt~LKk 17 (307)
||+|-++||+--+.||.
T Consensus 10 ~eali~~lFa~VSalKa 26 (131)
T PF04859_consen 10 MEALIAKLFATVSALKA 26 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68888999998888886
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.36 E-value=12 Score=33.98 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=30.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHH-------HhhhhhhhhhcccchHHHHHHHHHH--HHHHhhh
Q 021778 29 EQELKFTTYVNAADKYIEFLRSENEKLCAQV-------NNLKSEVDSIRSTSNEQCLHYQKLL--MEENQKN 91 (307)
Q Consensus 29 eQE~kf~~~~sAaeelie~Lr~EN~~L~~qv-------~~Lr~ElasiRs~kd~q~~~~QkLL--mEE~~Kn 91 (307)
+.=..|+.-+.-.....++|+.||.+|..++ ..|.+|+..+......=-.+|+.|+ |+..||-
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444433334445555555555544 4444444444333333345666665 6655554
No 32
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.88 E-value=67 Score=27.11 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 77 CLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 77 ~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+....+...-|.+|. +-||.+||+-+.
T Consensus 124 ~~~~~tq~~~e~rkk---e~E~~kLk~rL~ 150 (151)
T PF11559_consen 124 LQQRKTQYEHELRKK---EREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 344445556677888 889999998664
No 33
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=69.29 E-value=36 Score=29.36 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhcCcchhhhHHHHhh
Q 021778 6 KKLYDKYDKLKKKKFSELDNLNKEQELK 33 (307)
Q Consensus 6 ~KLydKYt~LKkrKlsd~d~lnkeQE~k 33 (307)
+++.+-=+++++.....+...++.++..
T Consensus 15 a~~~e~e~~~~~~~~~~l~~~~~~l~~e 42 (136)
T PF04871_consen 15 AKILELETKLKSQAESSLEQENKRLEAE 42 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444444
No 34
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.26 E-value=44 Score=32.85 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHH
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKL---LMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkL---LmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
-...-+..++..-+.|+.+|.+++..+.++|+.+|+-..+.|++ .-+=+.+-.+|..++..|.....
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556778888899999999999999988887665555554 22223334444455555444433
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.06 E-value=53 Score=31.97 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=51.6
Q ss_pred chhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 23 LDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 23 ~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
++++..+.+. .......+.+++..|+...+.|..++..|+.-...+..-..+++..++..|-+..........++.-++
T Consensus 153 ~~~l~~D~~~-L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 153 LEGLKEDYKL-LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 556666677777777877788877777777666666555556676776666555555544444444444
Q ss_pred HHHH
Q 021778 103 KLLQ 106 (307)
Q Consensus 103 ~Ll~ 106 (307)
.-++
T Consensus 232 ~~l~ 235 (312)
T smart00787 232 EELQ 235 (312)
T ss_pred HHHH
Confidence 4444
No 36
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.82 E-value=39 Score=36.47 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=62.6
Q ss_pred hhhcCcchhhhHHHHhhHHHHHHHHHHHHH-------H-------HHhhhHHHHHHHHhhhhhhhhhcccch-------H
Q 021778 17 KKKFSELDNLNKEQELKFTTYVNAADKYIE-------F-------LRSENEKLCAQVNNLKSEVDSIRSTSN-------E 75 (307)
Q Consensus 17 krKlsd~d~lnkeQE~kf~~~~sAaeelie-------~-------Lr~EN~~L~~qv~~Lr~ElasiRs~kd-------~ 75 (307)
-|+..+||.|..+=+.-.+-+..||=|||- | |.+-..++..-++.||.|+.++|..-+ +
T Consensus 42 ~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~ 121 (705)
T KOG2307|consen 42 ARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQ 121 (705)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467778888888888877777788888775 2 334445566667788888888873322 2
Q ss_pred HHHHHH--HHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 76 QCLHYQ--KLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 76 q~~~~Q--kLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
||.+.- +....+.+...-.-+-|+||++++.-..
T Consensus 122 q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~p 157 (705)
T KOG2307|consen 122 QCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPP 157 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333221 3345566666677788999999998444
No 37
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.00 E-value=46 Score=31.21 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=52.0
Q ss_pred HHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHH---HHHHHhhhhhhhhhcccchHHHHHHHHHHHH
Q 021778 10 DKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKL---CAQVNNLKSEVDSIRSTSNEQCLHYQKLLME 86 (307)
Q Consensus 10 dKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L---~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmE 86 (307)
+-|+++|-+=+.+++.++.+. .-..+|..-++.|.++=+.=-+.| ..+++.|.+.+.+.+++++.-....++ +++
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r-~~e 88 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR-LYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 457788877777766655443 334456666666555433333333 455777888888888888877666644 345
Q ss_pred HHhhhhhhHHHHHHH
Q 021778 87 ENQKNKALSEEVETL 101 (307)
Q Consensus 87 E~~Knk~L~eEV~kL 101 (307)
|...- -.+|.++
T Consensus 89 ey~~L---k~~in~~ 100 (230)
T PF10146_consen 89 EYKPL---KDEINEL 100 (230)
T ss_pred HHHHH---HHHHHHH
Confidence 55543 3444444
No 38
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.48 E-value=29 Score=31.26 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+....+..|+.+.+.+.+.+.+|..++...+.++++. +-+..+|++. ++|..++..|++-++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--~eR~~~l~~l---~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--EEREELLEEL---EELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45677788899999999999999999998887777666 3334455444 345667777777666
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=27 Score=37.64 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHhcC
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKA---LSEEVETLQKLLQEGT 109 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~---L~eEV~kLq~Ll~E~~ 109 (307)
...+-..+-++.++.|+.||..|...+.+|+.++--++ .+|+..++..-.+.+++.+ +.++|.+|.+=|+|+.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~----~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLE----SELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888999999999999999999998887775 6888888888888887765 5689999998887654
No 40
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=66.38 E-value=17 Score=33.38 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=28.4
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
.|+.||++|.+++.+|+.+++. -.++.+|-.+|++||.-...
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~----------------------~~~l~~en~~L~~lL~~~~~ 114 (276)
T PRK13922 73 DLREENEELKKELLELESRLQE----------------------LEQLEAENARLRELLNLKES 114 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhcCccc
Confidence 6888888888887666333222 13446788899999985443
No 41
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.91 E-value=54 Score=29.51 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
...+.-|..|+.++..|..++.+|+..+.-
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888887777444433
No 42
>PTZ00249 variable surface protein Vir28; Provisional
Probab=65.51 E-value=5.9 Score=41.35 Aligned_cols=59 Identities=31% Similarity=0.530 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 1 MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 1 ME~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
|..|| .|||+|++||..+... . . =..|..++.-=.++|.+-...++.|...+.+++.-+
T Consensus 134 MK~LY-DLYDkYnklks~~~~~-~-~----C~tf~~~~~~YN~~I~~y~~~Dd~L~~kL~~fK~LI 192 (516)
T PTZ00249 134 MEKLY-DLYDYFTELKESKDSS-T-L----CRNISDLAEKYESMMKEYNEKDNKLCDKLTNLKNVI 192 (516)
T ss_pred HHHHH-HHHHHHHhhcccCCCC-C-C----cccHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 56676 4999999999654443 1 1 234666666666677766666777777766654333
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.32 E-value=57 Score=32.35 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.1
Q ss_pred eeeEeeecchhhhhhhhh
Q 021778 265 ELLYRVLSLGTLERVALG 282 (307)
Q Consensus 265 EllY~~~SLGTleRvApe 282 (307)
.|.|.-+|-|--.|+|..
T Consensus 463 ~~~~~~lS~Ge~~r~~la 480 (562)
T PHA02562 463 DFSYASFSQGEKARIDLA 480 (562)
T ss_pred ccChhhcChhHHHHHHHH
Confidence 678888999998888765
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.09 E-value=45 Score=35.60 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=52.6
Q ss_pred HHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh---hhhhc---ccchHHHHHHHHH
Q 021778 10 DKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE---VDSIR---STSNEQCLHYQKL 83 (307)
Q Consensus 10 dKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E---lasiR---s~kd~q~~~~QkL 83 (307)
+-|+..-+-- .|.+.+++|=..+|..|+.-.-.-|+.|+..|++|.+|+++++.. .+++| ++..+-+.+||.-
T Consensus 203 ~~Y~~fl~g~-d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y 281 (581)
T KOG0995|consen 203 RSYTSFLKGE-DNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY 281 (581)
T ss_pred HHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 4455443322 236889999999999999988889999999999999998865432 34443 4444555556554
Q ss_pred H
Q 021778 84 L 84 (307)
Q Consensus 84 L 84 (307)
+
T Consensus 282 ~ 282 (581)
T KOG0995|consen 282 V 282 (581)
T ss_pred H
Confidence 4
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.90 E-value=51 Score=25.66 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
+.+..|..||+.++.+..++..-..++..+|..+|.=....+- =...+..|-+|++.|++=+++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888877777777776655554433333 223455567888888876664
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.52 E-value=92 Score=29.89 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.......+.+++..|+...+.|..++..|+.-.+.+-...-+++..++..|.+-..+-.++..++..|+.-++
T Consensus 168 L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777777666666665555555577888888777666655555555555555444
No 47
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=62.39 E-value=91 Score=29.08 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhH-----------HHHHHHHHHHHhcCC
Q 021778 54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALS-----------EEVETLQKLLQEGTA 110 (307)
Q Consensus 54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~-----------eEV~kLq~Ll~E~~~ 110 (307)
.|...|.+|+.+|--.=..++.+.+.++..|+...-++++|. ..|--|.-.|...+.
T Consensus 86 ~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~ 153 (196)
T PF15272_consen 86 DLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNN 153 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444422235667777777777776666665555 445555555554443
No 48
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=62.01 E-value=49 Score=26.08 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
.++-|+.|+.||=.|.=.|.-|...+...- ++...+.-+.-.|=.-....|..|+.++++++++
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~---~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLG---PESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999888888877776221 1222222222222233445566777777777763
No 49
>smart00340 HALZ homeobox associated leucin zipper.
Probab=61.96 E-value=12 Score=27.58 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
.+.+-+.|.+||.+|...|.+||.
T Consensus 10 LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999998888753
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.92 E-value=39 Score=38.32 Aligned_cols=58 Identities=28% Similarity=0.294 Sum_probs=48.6
Q ss_pred hhHHHHHHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhh--cccchHHHHHHHHHH----HHHHh
Q 021778 32 LKFTTYVNA---ADKYIEFLRSENEKLCAQVNNLKSEVDSI--RSTSNEQCLHYQKLL----MEENQ 89 (307)
Q Consensus 32 ~kf~~~~sA---aeelie~Lr~EN~~L~~qv~~Lr~Elasi--Rs~kd~q~~~~QkLL----mEE~~ 89 (307)
+.|.+-|+| ||+||+.|-+-|=.|-+.|..|+.++..+ --+.++||++-++.+ +||+-
T Consensus 434 adlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld 500 (1243)
T KOG0971|consen 434 ADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELD 500 (1243)
T ss_pred HHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888 59999999999999999999999999877 467889999988876 55554
No 51
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=61.39 E-value=8.3 Score=34.17 Aligned_cols=71 Identities=34% Similarity=0.349 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
..|....-++-..+..|..+.++|+++|..|..|=+.+| ++++.+|..|-+-.+..-.|.+||.-|+-|..
T Consensus 4 ~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr----~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~ 74 (181)
T PF09311_consen 4 LGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLR----GELANTQQKLQESEQEVAQLPEEVKHLQFLVS 74 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHT-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhcCcchHHHHHHHHH
Confidence 346666677778888999999999999999999998888 78888999887777777888999999998865
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=60.95 E-value=1.1e+02 Score=32.37 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhh
Q 021778 5 YKKLYDKYDKLKKK 18 (307)
Q Consensus 5 y~KLydKYt~LKkr 18 (307)
|..++++|..|+..
T Consensus 208 ~~~~~~~~~~l~~~ 221 (1179)
T TIGR02168 208 QAEKAERYKELKAE 221 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777776654
No 53
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.75 E-value=13 Score=27.92 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
.++|..-|..|+.||..|.++++-+
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999997655
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=60.60 E-value=44 Score=35.34 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh---hcccchHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhcC
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS---IRSTSNEQCLHYQKLLMEENQ-KNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas---iRs~kd~q~~~~QkLLmEE~~-Knk~L~eEV~kLq~Ll~E~~ 109 (307)
--..++++-+.+|+.||.+|..++..+|++++- +|++-+.++ +-|++|.. .-..-+.||.-++...+--+
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~----q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRV----QTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 334555666666677777666666666655532 233333333 33455555 33344677777776666333
No 55
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.15 E-value=29 Score=27.29 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
+++|=+-|..|+-||++|.++...|
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6677788889999999998887666
No 56
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.14 E-value=36 Score=26.85 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=34.0
Q ss_pred HhhhhhcCcchhhhHHHHhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHhhhhh
Q 021778 14 KLKKKKFSELDNLNKEQELKFTTYVNAADKY---IEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 14 ~LKkrKlsd~d~lnkeQE~kf~~~~sAaeel---ie~Lr~EN~~L~~qv~~Lr~E 65 (307)
.|-+.=++-+++|.++=+..-.+..++-.+| .++=+.+|..|+++|++|-..
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444445556777766555555555554444 457788999999999998333
No 57
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.95 E-value=12 Score=30.15 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.|++.+.+-++.|..+|+.|..++.+|..++...+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56677778889999999999999999988776664
No 58
>PRK11637 AmiB activator; Provisional
Probab=59.55 E-value=86 Score=30.85 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=4.6
Q ss_pred hhhHHHHHHHH
Q 021778 92 KALSEEVETLQ 102 (307)
Q Consensus 92 k~L~eEV~kLq 102 (307)
+.|...|.+|+
T Consensus 243 ~~L~~~I~~l~ 253 (428)
T PRK11637 243 SRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 59
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=59.00 E-value=3.2 Score=31.96 Aligned_cols=17 Identities=41% Similarity=1.109 Sum_probs=14.4
Q ss_pred hhhhhhhhcccC-CcchH
Q 021778 281 LGWMMDEIMFST-SMCPI 297 (307)
Q Consensus 281 peWMRe~I~FS~-~Mcpv 297 (307)
-+|||++..|+. --||+
T Consensus 27 ~gWmR~nFs~~~~p~CPl 44 (59)
T PF14169_consen 27 NGWMRDNFSFEEEPVCPL 44 (59)
T ss_pred CcccccccccCCCccCCC
Confidence 589999999988 67775
No 60
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=58.20 E-value=7.4 Score=33.95 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=23.9
Q ss_pred HHHh-hhHHHHHHHHhhhhhhhhhcccchH
Q 021778 47 FLRS-ENEKLCAQVNNLKSEVDSIRSTSNE 75 (307)
Q Consensus 47 ~Lr~-EN~~L~~qv~~Lr~ElasiRs~kd~ 75 (307)
.||. ..++|.+|+.+|..||+.+|++|-.
T Consensus 8 eLr~~~ke~L~~ql~dLK~ELa~LRv~K~t 37 (123)
T KOG3436|consen 8 ELRGKSKEQLLKQLDDLKVELAQLRVAKVT 37 (123)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4554 5589999999999999999987754
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=57.14 E-value=59 Score=37.04 Aligned_cols=78 Identities=29% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh----c------ccchHHHHHHHHHHHHHH-------h-
Q 021778 28 KEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI----R------STSNEQCLHYQKLLMEEN-------Q- 89 (307)
Q Consensus 28 keQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi----R------s~kd~q~~~~QkLLmEE~-------~- 89 (307)
+.+...+..++.|.++-|+.+|..-+.++-.++++..+..-+ | -..+.+++++++.+..+. +
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~ 401 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEEREN 401 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456677888888888888888888887777777766655333 2 233456677776663322 2
Q ss_pred hhhhhHHHHHHHHHHH
Q 021778 90 KNKALSEEVETLQKLL 105 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll 105 (307)
|-+-|..||++|+.++
T Consensus 402 k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667888888877644
No 62
>PRK03918 chromosome segregation protein; Provisional
Probab=57.11 E-value=1.2e+02 Score=32.07 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=15.8
Q ss_pred CCceeEEEeeecCCCccceeeEeeecchhhhhh
Q 021778 247 TGYSFSLTWVKSKDGEEFELLYRVLSLGTLERV 279 (307)
Q Consensus 247 SGysFsLTwv~~~~gee~EllY~~~SLGTleRv 279 (307)
.++.|++.=+ .+|. ...+..+|-|.-.++
T Consensus 769 ~~~~~~i~~l--~~g~--~~~~~~lS~G~~~~~ 797 (880)
T PRK03918 769 EENKVKLFVV--YQGK--ERPLTFLSGGERIAL 797 (880)
T ss_pred CCCceEEEEe--CCCC--cCChhhCCHhHHHHH
Confidence 3455555532 2343 345666777777743
No 63
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.94 E-value=28 Score=31.58 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=12.4
Q ss_pred HhhhhhhHHHHHHHHHHH
Q 021778 88 NQKNKALSEEVETLQKLL 105 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll 105 (307)
..+|+.|..|+.+|++=+
T Consensus 117 ~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347778888887776543
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.35 E-value=1.1e+02 Score=26.38 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=6.8
Q ss_pred HhhhHHHHHHHHhhhhhhh
Q 021778 49 RSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 49 r~EN~~L~~qv~~Lr~Ela 67 (307)
+++...+++.......++.
T Consensus 115 ~~~~~~~~~~~~~~~~~l~ 133 (191)
T PF04156_consen 115 KEDLQELRELLKSVEERLD 133 (191)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333
No 65
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.32 E-value=65 Score=30.08 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.++...-|++.-..|.+|-+.+.+|++++.|+
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666666666555555
No 66
>PRK03918 chromosome segregation protein; Provisional
Probab=55.30 E-value=1.5e+02 Score=31.33 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q 021778 5 YKKLYDKYDKLK 16 (307)
Q Consensus 5 y~KLydKYt~LK 16 (307)
|.++|+....+.
T Consensus 160 ~~~~~~~~~~~~ 171 (880)
T PRK03918 160 YENAYKNLGEVI 171 (880)
T ss_pred HHHHHHHHHHHH
Confidence 455555444433
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.77 E-value=64 Score=30.74 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=5.3
Q ss_pred HHhhhHHHHHHHHhh
Q 021778 48 LRSENEKLCAQVNNL 62 (307)
Q Consensus 48 Lr~EN~~L~~qv~~L 62 (307)
|++|...|.+.+.+|
T Consensus 108 le~el~~l~~~~~~l 122 (239)
T COG1579 108 LEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 68
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.09 E-value=26 Score=25.35 Aligned_cols=27 Identities=37% Similarity=0.478 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
.+.=-+.|+.||+.|+++|..|...+.
T Consensus 17 Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333446788889999999888876653
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=53.95 E-value=1e+02 Score=28.77 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQ 58 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~q 58 (307)
+-+++++|.++-+++||..-..|.++
T Consensus 57 qal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 57 QALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777788888777655555554
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.01 E-value=1.5e+02 Score=27.11 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
...+..-|.++..|.+.|.+++..|..|+..++
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555554443
No 71
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=51.22 E-value=86 Score=27.04 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKN-KALSEEVETLQKLL 105 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Kn-k~L~eEV~kLq~Ll 105 (307)
.++++-.++..++++.+-+++..+-.+ +-++++.+-++--.++-+..+.+.|+++-+ +.|-.||+-+++-.
T Consensus 35 ~~~K~~~~~~~~~ae~~~~~~~~~a~~---~s~~~a~~~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~ 106 (115)
T COG4980 35 KKLKKSGDALFELAEDKGTDILMIADK---LSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAI 106 (115)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHH
Confidence 567778888888888888888887775 777888887777788999999999999977 77777777776543
No 72
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.11 E-value=1.4e+02 Score=27.27 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHHHHHHh-------hhhhhHHHHHHHHHHHHhc
Q 021778 79 HYQKLLMEENQ-------KNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 79 ~~QkLLmEE~~-------Knk~L~eEV~kLq~Ll~E~ 108 (307)
.+++.|.-|.. ..+.|.+||.+|.+-++|+
T Consensus 154 ~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 154 SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4456677888888877765
No 73
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.97 E-value=18 Score=35.59 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
.|+..-++.|-..|++|++||.+|.+||+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888899999999888754443
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.70 E-value=94 Score=32.50 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=47.9
Q ss_pred HHHHHHHHHHH---HHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 34 FTTYVNAADKY---IEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 34 f~~~~sAaeel---ie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+++.+-...+ .+.|+.||++|+.+-.++...++..-.....++.+-|..|-+|.++. ...+..|+.-|+
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~---~~~l~~l~~~l~ 140 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL---QGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 33444444444 45899999999998777777777766666677777788887777654 555666665553
No 75
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.61 E-value=48 Score=31.93 Aligned_cols=53 Identities=25% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.|+.|+.++.++++.|.+|+ .+=+..+..|+ -.+..+..+++.++++|+.+..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev----~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEV----EDLENKLDSVR---RSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHhc
Confidence 67777777777776663332 22233444444 3445677788888888888775
No 76
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=50.29 E-value=39 Score=31.97 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=27.6
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 26 LNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 26 lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
+.|-+...+... .-+..-|..|..||+.|+.+|..|+.|++-+|
T Consensus 206 ~~kSR~~~k~~~-~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 206 VRKSRDKRKQKE-DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333 34445567888888888888888766665554
No 77
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.97 E-value=96 Score=34.18 Aligned_cols=65 Identities=31% Similarity=0.404 Sum_probs=49.7
Q ss_pred HHHHHHHhhhHHHHHH--------------HHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 43 KYIEFLRSENEKLCAQ--------------VNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 43 elie~Lr~EN~~L~~q--------------v~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
..|+.|+.+|..|..+ |+.|..|+..+.-.-++....||+.|=+..--...|..||+|++-.-+|
T Consensus 608 K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~E 686 (786)
T PF05483_consen 608 KNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADE 686 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4677888888888766 7788888888888888888889988766666666777777777766554
No 78
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.65 E-value=55 Score=26.76 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHH
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQK 82 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~Qk 82 (307)
=++.|=|-|.-|+-|.++|.++=..|..|++.+|+.++.=..+.|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q 57 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3677778888888888888888888878887777777654444443
No 79
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=48.56 E-value=1.4e+02 Score=26.54 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHH
Q 021778 33 KFTTYVNAADKYI 45 (307)
Q Consensus 33 kf~~~~sAaeeli 45 (307)
+|-+|+....++|
T Consensus 88 ~f~syY~~L~~~i 100 (184)
T PF05791_consen 88 TFQSYYDTLVEAI 100 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666665
No 80
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.26 E-value=2e+02 Score=30.76 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhcCcc
Q 021778 215 CLFQALIEYLLGMKL 229 (307)
Q Consensus 215 ~~fq~L~e~llgMKl 229 (307)
--|...++-.+|=.|
T Consensus 535 ~~y~~Aie~~lg~~l 549 (1164)
T TIGR02169 535 ERYATAIEVAAGNRL 549 (1164)
T ss_pred HHHHHHHHHHhhhhh
Confidence 356667777777544
No 81
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.14 E-value=79 Score=30.97 Aligned_cols=17 Identities=12% Similarity=-0.193 Sum_probs=9.1
Q ss_pred eEeeecchhhhhhhhhh
Q 021778 267 LYRVLSLGTLERVALGW 283 (307)
Q Consensus 267 lY~~~SLGTleRvApeW 283 (307)
.|...=||+..+--|-|
T Consensus 253 ~~~~p~l~~~~~~q~s~ 269 (292)
T KOG4005|consen 253 RLPGPMLGPAAERQESD 269 (292)
T ss_pred cCCCcccchHhhhccch
Confidence 34445566665555554
No 82
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.08 E-value=37 Score=34.56 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=15.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhh
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
-||.||++|....++|+.||+-+
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666655
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.92 E-value=95 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 021778 90 KNKALSEEVETLQKLLQ 106 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll~ 106 (307)
...+|.--|.-||.+.+
T Consensus 97 ~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 84
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.86 E-value=2.1e+02 Score=25.76 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKL 104 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~L 104 (307)
.....|..++..|....++|..+++.++...+.--......+-. .+|...+||..|+.-
T Consensus 120 ~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~---~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 120 QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE---EEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34678888888888888888888887765433322222222222 234558888888764
No 85
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.07 E-value=2.8e+02 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHH
Q 021778 91 NKALSEEVETLQKLLQ 106 (307)
Q Consensus 91 nk~L~eEV~kLq~Ll~ 106 (307)
+.+.++.|.-||..+.
T Consensus 430 ~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456777777777765
No 86
>PRK11546 zraP zinc resistance protein; Provisional
Probab=46.65 E-value=35 Score=30.27 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHhhh
Q 021778 3 SLYKKLYDKYDKLKK 17 (307)
Q Consensus 3 ~Ly~KLydKYt~LKk 17 (307)
.|+.++|++...|+.
T Consensus 54 ~I~~~f~~~t~~LRq 68 (143)
T PRK11546 54 KIHNDFYAQTSALRQ 68 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 87
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.41 E-value=1.1e+02 Score=30.33 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.-+.+...-++||..+|++|...++.+..++...
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777899999999999988888777555
No 88
>PRK11637 AmiB activator; Provisional
Probab=46.32 E-value=2.2e+02 Score=28.06 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=5.5
Q ss_pred cCccccccCC
Q 021778 226 GMKLSPYHES 235 (307)
Q Consensus 226 gMKlS~~~~~ 235 (307)
|+-|.+..++
T Consensus 331 Gi~i~~~~g~ 340 (428)
T PRK11637 331 GMVIGASEGT 340 (428)
T ss_pred CEEeecCCCC
Confidence 5556555544
No 89
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=46.31 E-value=16 Score=29.52 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=11.7
Q ss_pred HHHHHHhhhHHHHHHHHhh
Q 021778 44 YIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 44 lie~Lr~EN~~L~~qv~~L 62 (307)
+|..|+.||.+|-..+..|
T Consensus 1 li~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKL 19 (76)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3566667777766665444
No 90
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=46.24 E-value=35 Score=28.33 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=25.1
Q ss_pred hhhHHHHhhHHHHHHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHH
Q 021778 25 NLNKEQELKFTTYVNA---ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQ 81 (307)
Q Consensus 25 ~lnkeQE~kf~~~~sA---aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~Q 81 (307)
-+|++=+. |.++.+. +++.|+.|+..-..++.+|...++++...+..-+..+.+-+
T Consensus 49 lIN~dY~d-Fv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~ 107 (133)
T PF06148_consen 49 LINDDYAD-FVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERK 107 (133)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHH
T ss_pred HHHhhHHH-HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555443 7777666 67778889888888888888888888777766666664433
No 91
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.82 E-value=2.8e+02 Score=27.14 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 4 LYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 4 Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
|..-|-..+..|+. |...|. +++.....++-+..+.-+.|+.|-..|...+.++
T Consensus 145 Lk~~L~~~~~~l~~----D~~~L~-~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 145 LKEGLDENLEGLKE----DYKLLM-KELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444455555553 222333 4444555666666666666666666666655554
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.78 E-value=1.6e+02 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcc
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRS 71 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs 71 (307)
..++-++.|..+...|..+++.|+.++..++.
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444555555555555555555554
No 93
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.68 E-value=1.6e+02 Score=35.49 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=63.6
Q ss_pred cchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHH
Q 021778 22 ELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEV 98 (307)
Q Consensus 22 d~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV 98 (307)
++.-++..+|..+..-..-.+.-|..|..+...|...+.+-.+++.++....+.++..||.++-+.....+.+-++|
T Consensus 784 ~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l 860 (1822)
T KOG4674|consen 784 NLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSL 860 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888889999999999999999999998888888889999999999999999977776555444443
No 94
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=45.40 E-value=1.2e+02 Score=22.93 Aligned_cols=36 Identities=14% Similarity=0.413 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.+..|+.|++++ ..|+.+...|...|.+|...+..+
T Consensus 49 nY~~fI~as~~I-~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 49 NYRDFIEASDEI-SSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666654 448888888888877776555444
No 95
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.32 E-value=33 Score=30.49 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcc
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRS 71 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs 71 (307)
+|..+|..|..||..|+.|++.+|-
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555555543
No 96
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=45.18 E-value=41 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=33.9
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH--HHHHhhhhhhHHH
Q 021778 48 LRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL--MEENQKNKALSEE 97 (307)
Q Consensus 48 Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL--mEE~~Knk~L~eE 97 (307)
|+.++.+|..+...|..++.+|+....---.+|+.|+ |+..+++.-+.+|
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~~~~~~ 160 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMAILVED 160 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 4556666666666666666666655555556788876 9999998777663
No 97
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=44.71 E-value=39 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.4
Q ss_pred HHHhhhHHHHHHHHhhhhhh
Q 021778 47 FLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~El 66 (307)
+|+.||++|++++..|+.++
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 61 VLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987774443
No 98
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=44.54 E-value=3.9e+02 Score=27.93 Aligned_cols=73 Identities=26% Similarity=0.347 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh-----------cccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSI-----------RSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKL-- 104 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi-----------Rs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~L-- 104 (307)
++.+++.+.+||--|.++-+| ++.|.+|- --+-.+|++..|+-|=.-+||. .-+|.-||+=
T Consensus 35 ~qk~~~~~D~lr~kilk~teq---ikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqks---ahtiaqlqkkL~ 108 (455)
T KOG3850|consen 35 VQKLKEIKDSLRQKILKRTEQ---IKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKS---AHTIAQLQKKLE 108 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhh---HHHHHHHHHHHH
Confidence 345888999999999999999 55555432 1344478888888887777776 6777766542
Q ss_pred --------HHhcCCCCCCCC
Q 021778 105 --------LQEGTASSSKDD 116 (307)
Q Consensus 105 --------l~E~~~~~~k~~ 116 (307)
+.-|.+..+||-
T Consensus 109 ~y~~rLkeieng~~r~s~~~ 128 (455)
T KOG3850|consen 109 QYHRRLKEIENGESRPSKDK 128 (455)
T ss_pred HHHHHHHHHhcCCCCCCcch
Confidence 224666666554
No 99
>PF00761 Polyoma_coat2: Polyomavirus coat protein; InterPro: IPR001070 This family includes the VP2 and VP3 internal coat proteins from Polyomaviruses, which are small dsDNA tumour viruses. Their capsids contain 360 copies of the VP1 proteins IPR000662 from INTERPRO arranged in 72 pentamers. This capsid encloses the internal proteins VP2 and VP3, as well as the viral DNA. A single copy of VP2 or VP3 associates with each VP1 pentamer. A crystal structure shows that the C-terminal region of the VP2/VP3 protein interacts with the VP1 pentamer [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1CN3_F.
Probab=44.18 E-value=7.8 Score=38.40 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=5.5
Q ss_pred eeeEeeec-chhhhhhhhhhhh
Q 021778 265 ELLYRVLS-LGTLERVALGWMM 285 (307)
Q Consensus 265 EllY~~~S-LGTleRvApeWMR 285 (307)
|..+++.. =|+..|+||+||-
T Consensus 274 e~v~~~~~pGGa~Qr~~PDWmL 295 (322)
T PF00761_consen 274 EYVEKYEAPGGANQRVTPDWML 295 (322)
T ss_dssp ----------------EEGGGH
T ss_pred CeEEeeCCCCccccccCchHHH
Confidence 55555543 4799999999995
No 100
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.10 E-value=1.8e+02 Score=28.49 Aligned_cols=53 Identities=26% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
.|+++|++|.+.+++++.++.+++..+ -+++|..|. |--||.+|++-+.|=.+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~---------s~LeE~~~~--l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVEN---------SRLEEMLKK--LPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHh--chhHHHHHHHHHHHhcc
Confidence 455556666666666655555555432 224444333 45577777776665544
No 101
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.96 E-value=1e+02 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
-+=+...+-.|..+|+||+.+++.|.++
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777999999999999998776
No 102
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=43.63 E-value=2.1e+02 Score=24.51 Aligned_cols=75 Identities=32% Similarity=0.367 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHH-----HhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 33 KFTTYVNAADKYIEFL-----RSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 33 kf~~~~sAaeelie~L-----r~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
|+.+|-.....+|+-+ +=|+++|++.= +|+-|.++--.++.+...+|.++-|=...=+-|..|-+-|++.-+|
T Consensus 35 ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG--~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~e 112 (120)
T PF14931_consen 35 KISEFQKIVKGFIEILDELAKRVENEKLKAIG--ARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 24677787775 8999999988889999999999888777777778888888888776
Q ss_pred cC
Q 021778 108 GT 109 (307)
Q Consensus 108 ~~ 109 (307)
..
T Consensus 113 Q~ 114 (120)
T PF14931_consen 113 QN 114 (120)
T ss_pred HH
Confidence 54
No 103
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.22 E-value=1.1e+02 Score=32.25 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhh----hhhhc---ccchHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHhc
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSE----VDSIR---STSNEQCLHYQKLLMEENQKNKALS---EEVETLQKLLQEG 108 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~E----lasiR---s~kd~q~~~~QkLLmEE~~Knk~L~---eEV~kLq~Ll~E~ 108 (307)
.|++-.|+.|+.|.++|+.++.--.++ ++-.| ++..++.+..|++|..|..++++|. +|-+++++...|.
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeer 328 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEER 328 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355667889999999999886433322 23333 6778899999999999999998875 6778888877765
No 104
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.69 E-value=48 Score=29.40 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 50 SENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
..+..|..+|..+-.++...+ ..++..+..++..+-.=..+.+.|.++|..+.++++
T Consensus 88 r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 88 RSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555655555554443 445555555555544333344445555554444443
No 105
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=42.48 E-value=1.8e+02 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 021778 95 SEEVETLQKLLQEGTA 110 (307)
Q Consensus 95 ~eEV~kLq~Ll~E~~~ 110 (307)
++.|..|+.++.....
T Consensus 59 ~~ri~~Lk~l~~~~~~ 74 (251)
T PF09753_consen 59 SERIDFLKGLIEAEKL 74 (251)
T ss_pred HHHHHHHHHHHhcccc
Confidence 7788899988875443
No 106
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.27 E-value=1.3e+02 Score=29.98 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 73 SNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 73 kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
+.+++..+++.+.+=.++-++|.+++..|+..++.
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555666667777777777763
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.07 E-value=1.8e+02 Score=26.11 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHhcCcc
Q 021778 211 GPANCLFQALIEYLLGMKL 229 (307)
Q Consensus 211 ~~~~~~fq~L~e~llgMKl 229 (307)
|..+++.++|.-|| |-+|
T Consensus 202 gyvahlv~lls~yL-~v~L 219 (302)
T PF10186_consen 202 GYVAHLVSLLSRYL-GVPL 219 (302)
T ss_pred HHHHHHHHHHHHHh-CCCC
Confidence 34456666666554 5554
No 108
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=41.90 E-value=37 Score=25.59 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=18.4
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHhhhH
Q 021778 25 NLNKEQELKFTTYVNAADKYIEFLRSENE 53 (307)
Q Consensus 25 ~lnkeQE~kf~~~~sAaeelie~Lr~EN~ 53 (307)
+|..+|..+|..|..++..-+..++...+
T Consensus 14 ~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~ 42 (100)
T PF07813_consen 14 NLTDEQKAKWRAIRQAMKAKMKPLKAMRE 42 (100)
T ss_dssp --THHHHHHHHHHHHHHCTTS------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 48889999999999999888887733333
No 109
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=41.68 E-value=76 Score=24.97 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL 84 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL 84 (307)
.+-|+.+=+||+.|..-+.+.-+ .++-.+|..||+.|
T Consensus 8 ~~~IQk~LdEN~~LI~~I~e~qn------~Gr~~Ec~qyq~~L 44 (65)
T PF05030_consen 8 TEQIQKMLDENDQLIQCIQEYQN------KGRAQECVQYQQIL 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHH
Confidence 45688899999999998877533 67778999999877
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.87 E-value=1.7e+02 Score=31.42 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhHH
Q 021778 31 ELKFTTYVNAADKYIEFLRSENEK 54 (307)
Q Consensus 31 E~kf~~~~sAaeelie~Lr~EN~~ 54 (307)
..||.+|+++++.-.+|+-+..++
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 468999998877655544433333
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.74 E-value=1.6e+02 Score=29.28 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
+..+=+..|..||..|+...++|.+|-.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~ 191 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETD 191 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 3344455677888888888888875554
No 112
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=40.71 E-value=40 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHH----HHHHhhh
Q 021778 71 STSNEQCLHYQKLL----MEENQKN 91 (307)
Q Consensus 71 s~kd~q~~~~QkLL----mEE~~Kn 91 (307)
..|+..|.+.++.| +.|.+.|
T Consensus 53 ~aKer~~~eLKrkLGit~l~elkqn 77 (162)
T PF04201_consen 53 AAKERHCAELKRKLGITPLSELKQN 77 (162)
T ss_pred HHHHHhHHHHHHHHCCchHHHHHHH
Confidence 78999999999998 8777766
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.54 E-value=2.9e+02 Score=25.35 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..+.-+..++.-++.|+..|+.|..+|..++.+++++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566677777777777776666666666
No 114
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.09 E-value=3.9e+02 Score=28.41 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhhcCc---ch-----------hhhHHHHhhHHHHHHHHHHHHH
Q 021778 4 LYKKLYDKYDKLKKKKFSE---LD-----------NLNKEQELKFTTYVNAADKYIE 46 (307)
Q Consensus 4 Ly~KLydKYt~LKkrKlsd---~d-----------~lnkeQE~kf~~~~sAaeelie 46 (307)
+-.||-.|-.||..+-++. |+ -|++|||+=-..+.+.|+.|-+
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777776665554 22 3456666655555555554433
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.08 E-value=79 Score=26.18 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhcccc
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSIRSTS 73 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~ElasiRs~k 73 (307)
+.-|..|..+|..|...+..|+.++..-|..|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 116
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=39.79 E-value=2e+02 Score=23.18 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred hcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHH
Q 021778 19 KFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEV 98 (307)
Q Consensus 19 Klsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV 98 (307)
.+..++..-..+...|......+...-..|+.....|.+.+... ......-+.+...+.+..-+|.+.......||
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f----~~flken~~k~~rA~k~a~~e~k~~~~k~~ei 83 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKF----DKFLKENEAKRERAEKRAEEEKKKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444445555555555543332 11223445555666666666666666666666
Q ss_pred HHHHHHHH
Q 021778 99 ETLQKLLQ 106 (307)
Q Consensus 99 ~kLq~Ll~ 106 (307)
.+|+.-+.
T Consensus 84 ~~l~~~l~ 91 (126)
T PF13863_consen 84 KKLKAELE 91 (126)
T ss_pred HHHHHHHH
Confidence 66655443
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.78 E-value=1.8e+02 Score=25.59 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHH
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQ 76 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q 76 (307)
++.-|+.|+.+...+...++.|.-||.++|+.|++=
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888777653
No 118
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=39.45 E-value=1.8e+02 Score=31.45 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHhhHHHHHHHHHHHHHH---HHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHH----HHHHH
Q 021778 30 QELKFTTYVNAADKYIEF---LRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEE----VETLQ 102 (307)
Q Consensus 30 QE~kf~~~~sAaeelie~---Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eE----V~kLq 102 (307)
+-+.|--+.+-|.+.+++ |.+|.++|..+...+ ..-.+++...|+-|+++.+-+.+|-+- |++|-
T Consensus 436 rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~--------~e~~~e~k~~~~~L~~~~~~~~~llgqi~~~i~kl~ 507 (707)
T KOG0957|consen 436 RNERMSGISSFMQERDSQIIPLEEEQLRLSREYLAE--------TEANQEKKSSQKHLVERFSANEELLGQILTSIEKLH 507 (707)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHhhhHHHHHHhhhhhHHHhc
Confidence 334444445555555553 555556666664443 333466777888899988888777655 46777
Q ss_pred HHHHhcCCCCC---CCCCCccccc
Q 021778 103 KLLQEGTASSS---KDDNNDNMQL 123 (307)
Q Consensus 103 ~Ll~E~~~~~~---k~~~~~n~~~ 123 (307)
.++-|-.+.++ +++||..+|.
T Consensus 508 ~pl~e~~pks~~p~~~~~~rk~g~ 531 (707)
T KOG0957|consen 508 QPLTELGPKSGLPLSDFNNRKSGS 531 (707)
T ss_pred chhhhcCCccCCcCcccccccccc
Confidence 77777776655 5666665554
No 119
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=39.16 E-value=2.3e+02 Score=28.31 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHhhHHHHHHHHH--------HHHHHHHhhhHHHHHHHHh-hhhhhhhhc--ccchHHHHHHHHHHHHHHh---------
Q 021778 30 QELKFTTYVNAAD--------KYIEFLRSENEKLCAQVNN-LKSEVDSIR--STSNEQCLHYQKLLMEENQ--------- 89 (307)
Q Consensus 30 QE~kf~~~~sAae--------elie~Lr~EN~~L~~qv~~-Lr~ElasiR--s~kd~q~~~~QkLLmEE~~--------- 89 (307)
++-..-.||.|++ +.|++||.+-.+|..|..+ -|.|-..|+ ++|+++.++|-..+-+=.+
T Consensus 87 s~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~ql 166 (330)
T KOG2991|consen 87 SWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQL 166 (330)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 4555566777765 7899999999999998654 345554453 8899999888665533222
Q ss_pred ----hhhhhHHHHHHHHHHHHhcCC
Q 021778 90 ----KNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 90 ----Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
=.-+.+.+.+||++++.+.-+
T Consensus 167 R~~llDPAinl~F~rlK~ele~tk~ 191 (330)
T KOG2991|consen 167 RSTLLDPAINLFFLRLKGELEQTKD 191 (330)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHH
Confidence 123567888999999885543
No 120
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=38.87 E-value=46 Score=24.35 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHH
Q 021778 77 CLHYQKLLMEENQKNKALSEEVET 100 (307)
Q Consensus 77 ~~~~QkLLmEE~~Knk~L~eEV~k 100 (307)
+..-|+|-+..+.+.++|..|+..
T Consensus 19 LDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 19 LDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444558888888888888875
No 121
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.53 E-value=66 Score=26.59 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~L 62 (307)
++.-++.|+.+|+.|.++|..|
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 122
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.52 E-value=2.5e+02 Score=25.51 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 28 KEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 28 keQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
|++=+.+..=-.+.+..+..+..||.+|.+-+..++.|++.+|
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~ 75 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELR 75 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444555555566777788888888888877777777776665
No 123
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.11 E-value=1.3e+02 Score=23.58 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHH---HHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 39 NAADKYI---EFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 39 sAaeeli---e~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
...+.+| +.|+.||..|++++..+..|=+.+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 489999999999987775554444
No 124
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.37 E-value=69 Score=26.86 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQC 77 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~ 77 (307)
++.+...++.|+.+|..|-+..-.++.+|...|..-...+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~ 68 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELY 68 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 5566777778888888888876444444444443333333
No 125
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.29 E-value=66 Score=25.91 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=11.7
Q ss_pred hhcCcchhhhHHHHhhHH
Q 021778 18 KKFSELDNLNKEQELKFT 35 (307)
Q Consensus 18 rKlsd~d~lnkeQE~kf~ 35 (307)
.||.+||.|-.+....-.
T Consensus 34 ~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 34 EKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 467778888776655443
No 126
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.58 E-value=3.3e+02 Score=31.03 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHY 80 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~ 80 (307)
...++-++.|..+++.+.+.+.++..++..+....+.-..++
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344445556666666666666666666655544333333333
No 127
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.37 E-value=1.3e+02 Score=29.14 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=38.3
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHH
Q 021778 31 ELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQC 77 (307)
Q Consensus 31 E~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~ 77 (307)
..++-++-.+++.=+..|..+-+.|.+.|.+...||+-+++=||.++
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EY 115 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEY 115 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556666677777789999999999999999999999988888764
No 128
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=35.84 E-value=1.1e+02 Score=27.52 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=31.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+..+-|...-+.+.+++.+| ...+..++++++-||-| +-+.|++|...+|++|-+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eL----e~~l~~kad~vvsYqll-----~hr~e~ee~~~~l~~le~ 139 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDEL----ERQLQQKADDVVSYQLL-----QHRREMEEMLERLQKLEA 139 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHH-----HhHHHHHHHHHHHHHHHH
Confidence 33444444555555554443 44458889999999965 344455555555555544
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=35.83 E-value=3.4e+02 Score=28.92 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..+-+.+++.-+..|+.+...+..++..++.+++.+
T Consensus 204 l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444444433
No 130
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.40 E-value=3e+02 Score=26.69 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=50.7
Q ss_pred hHHHHHHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 33 KFTTYVNA---ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 33 kf~~~~sA---aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
||.+|-++ +-++....|.|-+++...+..|.+|-...+ ..+..+.+-|++-...+..+..++.++++..+
T Consensus 224 Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k----~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 224 KFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK----SKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 667778888888888888888888877776 45666677777777777777888887776443
No 131
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.77 E-value=1.5e+02 Score=21.72 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=6.9
Q ss_pred HHHHHHhhhHHHHHHHH
Q 021778 44 YIEFLRSENEKLCAQVN 60 (307)
Q Consensus 44 lie~Lr~EN~~L~~qv~ 60 (307)
-++.|+.+|+.|..++.
T Consensus 32 ~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 32 EIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 132
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=34.61 E-value=2.7e+02 Score=26.72 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=27.3
Q ss_pred hhhhHHHHhhHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 24 DNLNKEQELKFTTYVNAAD----KYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 24 d~lnkeQE~kf~~~~sAae----elie~Lr~EN~~L~~qv~~Lr~El 66 (307)
+.+..-|.+.|..+.+-+. .-...||.||++|.-.|..+++.+
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677888876655443 334477777777777666655544
No 133
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.43 E-value=3e+02 Score=25.92 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
+++..-+..|+++++|.+.|+..=...-.||..|= .++|......+..--.-..+-..+.+|+.+|+.-..+.
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777777777777776444445554442 33444443333333222223344578888888776644
No 134
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=34.16 E-value=2.2e+02 Score=27.59 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh--hhhcccchHHHHHH
Q 021778 3 SLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV--DSIRSTSNEQCLHY 80 (307)
Q Consensus 3 ~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El--asiRs~kd~q~~~~ 80 (307)
+.|.-||.---+.--||-+- .+.+ -+-|..-+..|.++|..|-.+|+++...+ +.+|+.-+-+.
T Consensus 163 aAYqtlyeSsvAfGmRKALq---ae~e--------k~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i--- 228 (259)
T KOG4001|consen 163 AAYQTLYESSVAFGMRKALQ---AENE--------KTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI--- 228 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH---Hhhh--------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH---
Confidence 35677777666666666544 2222 23466777889999999999998886655 33444433333
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH
Q 021778 81 QKLLMEENQKNKALSEEVETLQK 103 (307)
Q Consensus 81 QkLLmEE~~Knk~L~eEV~kLq~ 103 (307)
+| |-..+||+.|++
T Consensus 229 -----eE----kk~~eei~fLk~ 242 (259)
T KOG4001|consen 229 -----EE----KKMKEEIEFLKE 242 (259)
T ss_pred -----HH----HHHHHHHHHHHH
Confidence 22 234677877765
No 135
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.04 E-value=4e+02 Score=25.01 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhccc---chHHHHHHHH------HHHHHHhhhhhhHHHHHHHHH
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRST---SNEQCLHYQK------LLMEENQKNKALSEEVETLQK 103 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~---kd~q~~~~Qk------LLmEE~~Knk~L~eEV~kLq~ 103 (307)
+...|++|+.. |..|+++...-...+.++|..|+.++.. ..=++...++ .+++-...=+.+-+-..+|+.
T Consensus 58 ~s~~f~~a~~~-v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ 136 (291)
T PF10475_consen 58 KSDSFFQAMSS-VQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQE 136 (291)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 4578888888888889999988887522 1222222222 134444455566677777888
Q ss_pred HHHhcC
Q 021778 104 LLQEGT 109 (307)
Q Consensus 104 Ll~E~~ 109 (307)
|+++|.
T Consensus 137 ll~~~d 142 (291)
T PF10475_consen 137 LLEEGD 142 (291)
T ss_pred HHhcCC
Confidence 887654
No 136
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.87 E-value=2.7e+02 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
-+.+.+++++.++..|..+|..|+.||.-+
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666665555555333
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.86 E-value=2e+02 Score=31.17 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred hhhhHHHHhhHHHHHHHHH----------HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH
Q 021778 24 DNLNKEQELKFTTYVNAAD----------KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL 84 (307)
Q Consensus 24 d~lnkeQE~kf~~~~sAae----------elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL 84 (307)
-+|..|+..+..+-..||. |-=+++|..-..|...+..||.|| -.+|+++......+
T Consensus 509 kQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el----k~kee~~~~~e~~~ 575 (697)
T PF09726_consen 509 KQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL----KQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5677777777776666665 334455555455544444444444 34556655554444
No 138
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.63 E-value=1.6e+02 Score=27.94 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=45.3
Q ss_pred HHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh-----c----ccchHHHHHHHHH
Q 021778 13 DKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI-----R----STSNEQCLHYQKL 83 (307)
Q Consensus 13 t~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi-----R----s~kd~q~~~~QkL 83 (307)
-.-|.|.+|. +||.... ++--.-.+..+.+..|.+=.+.|..||..+..|+.++ | ++++..+.+++..
T Consensus 95 kesKtKafSk-eGL~~~~--k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ 171 (233)
T PF04065_consen 95 KESKTKAFSK-EGLMAAS--KLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESR 171 (233)
T ss_pred HHhcccccch-hhhhccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHH
Confidence 3447788898 8887433 3334445666677777777777777777777777655 1 3566666666655
Q ss_pred H
Q 021778 84 L 84 (307)
Q Consensus 84 L 84 (307)
+
T Consensus 172 i 172 (233)
T PF04065_consen 172 I 172 (233)
T ss_pred H
Confidence 4
No 139
>PRK09039 hypothetical protein; Validated
Probab=32.63 E-value=3.7e+02 Score=26.37 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.++.+-.+..-+|.-|+.|++.+| .|++..|-.|-+=.+..++....|..|+.-++
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr----~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALR----RQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666676666 34666676665555566666666766665554
No 140
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.52 E-value=71 Score=23.46 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccc
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTS 73 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~k 73 (307)
.-|..|+.+++.|..+..+|..++..++.+.
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3466677777777777777766666664433
No 141
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.45 E-value=1.3e+02 Score=24.79 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=8.2
Q ss_pred HhhhhhhHHHHHHHHH
Q 021778 88 NQKNKALSEEVETLQK 103 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~ 103 (307)
.++|..|..||.+|+.
T Consensus 47 ~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 47 KARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3445555555555544
No 142
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.35 E-value=3.3e+02 Score=30.19 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021778 8 LYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQV 59 (307)
Q Consensus 8 LydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv 59 (307)
|+..+|+|...-=.+.|- +.+=..+.+=+.|.+.-.+.|.+|++.|+-.+
T Consensus 303 ~~~~qt~l~~~~~~~~d~--r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDM--RQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455556665544333222 45555555556666666666667766666554
No 143
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.31 E-value=4.3e+02 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhh
Q 021778 7 KLYDKYDKLKKKK 19 (307)
Q Consensus 7 KLydKYt~LKkrK 19 (307)
+-|+.|..|-+++
T Consensus 179 ~~~~~~~~L~~~g 191 (423)
T TIGR01843 179 EELEARRKLKEKG 191 (423)
T ss_pred HHHHHHHHHHHcC
Confidence 3344444444433
No 144
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.18 E-value=1.9e+02 Score=24.53 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021778 95 SEEVETLQKLLQEGT 109 (307)
Q Consensus 95 ~eEV~kLq~Ll~E~~ 109 (307)
.+=-..|..|-+||+
T Consensus 69 ~~g~~NL~~LY~EGF 83 (110)
T PRK13169 69 GEGKDNLARLYQEGF 83 (110)
T ss_pred cchHHHHHHHHHcCc
Confidence 334467888888886
No 145
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.18 E-value=5e+02 Score=29.67 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhcCcchhh
Q 021778 7 KLYDKYDKLKKKKFSELDNL 26 (307)
Q Consensus 7 KLydKYt~LKkrKlsd~d~l 26 (307)
.-|+.|..++.+.+.+++.-
T Consensus 733 ~~~~~~~~l~~~eip~l~~~ 752 (1311)
T TIGR00606 733 PGRQSIIDLKEKEIPELRNK 752 (1311)
T ss_pred hhHHHHHHHHHhhchhHHHH
Confidence 45788888876666664433
No 146
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=32.01 E-value=2e+02 Score=22.86 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
....+.+.++-+.||+-+-..|.++++.+ -.+ -..++++.|..++++|.+.+..+.+
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~-------d~s-------------~~~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQM-------DPS-------------LGRRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccc-------------cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665443 011 1235677788888888887776554
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.74 E-value=2.8e+02 Score=30.54 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh---cccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSI---RSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi---Rs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+.++-.+++-+.||++|.....+|+.+...+ |...-+++-+|.--=.-=.+..-+|.||-.-|||.+-
T Consensus 44 k~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 44 KQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444455566677777777766665443222 1111122222211111111255678888888888765
No 148
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.57 E-value=1.8e+02 Score=29.73 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh----cccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI----RSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi----Rs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
..++..+-|..-++..-=||-+.+|+=.=+++| -++..+++.-.+.-|+|=.-+=++|++.+.+||=|++-=
T Consensus 23 ~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~~~s~qeKFl~IR~KlleL~~~lQ~lS~df~~LqPLF~Ti 98 (379)
T PF11593_consen 23 SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMNNKSPQEKFLLIRSKLLELYNKLQELSSDFQKLQPLFDTI 98 (379)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHhhh
Confidence 667777788888888888888888887777777 267788888888999998899999999999999998743
No 149
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.07 E-value=5.1e+02 Score=27.63 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=41.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
.--+.+..|+..+...++.|..||..+|..=++|+.-.=--|..=+.+-..-.+||..||
T Consensus 455 ~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 455 KEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333455577888888888999999999988888876544444333334444578888887
No 150
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.03 E-value=1.4e+02 Score=26.32 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHh---hhHHHHHHHHhhh
Q 021778 36 TYVNAADKYIEFLRS---ENEKLCAQVNNLK 63 (307)
Q Consensus 36 ~~~sAaeelie~Lr~---EN~~L~~qv~~Lr 63 (307)
.=+..+..-|..|++ +|+.|..++.+|.
T Consensus 34 ~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 34 TQLKEADKQIKDLKKSAKDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 335556666677776 6777777766663
No 151
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.71 E-value=1e+02 Score=25.91 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHhcC
Q 021778 94 LSEEVETLQKLLQEGT 109 (307)
Q Consensus 94 L~eEV~kLq~Ll~E~~ 109 (307)
+.+=-..|..|-+||+
T Consensus 71 ~~~g~~NL~~LY~EGF 86 (107)
T PF06156_consen 71 LGEGRDNLARLYQEGF 86 (107)
T ss_pred ccchHHHHHHHHhcCe
Confidence 4445566888888876
No 152
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.47 E-value=2.5e+02 Score=29.96 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHH
Q 021778 93 ALSEEVETLQKL 104 (307)
Q Consensus 93 ~L~eEV~kLq~L 104 (307)
+.+.+..+|+.+
T Consensus 238 E~e~~~~~lk~~ 249 (546)
T PF07888_consen 238 EQEKELDKLKEL 249 (546)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 153
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=30.37 E-value=4.6e+02 Score=28.45 Aligned_cols=97 Identities=24% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhhcCc----chhh----hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcc-cch
Q 021778 4 LYKKLYDKYDKLKKKKFSE----LDNL----NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRS-TSN 74 (307)
Q Consensus 4 Ly~KLydKYt~LKkrKlsd----~d~l----nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs-~kd 74 (307)
+...||+.|-+|+.| +.= ||=| +.=|-..-..|-.|.+ +|..--+.|.++.+.|.+|+.++|. --|
T Consensus 193 ~Desl~~~ll~L~ar-m~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e----~L~~r~~~L~~k~~~L~~e~~~LK~ELie 267 (683)
T PF08580_consen 193 QDESLYSSLLALFAR-MQPLRASLDFLPMRIEEFQSRAESIFPSACE----ELEDRYERLEKKWKKLEKEAESLKKELIE 267 (683)
T ss_pred HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567899999999765 221 1111 0001111122333333 3333344455555555555555541 123
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 75 EQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 75 ~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
+.-...=+-|..|.++- -++|+++..=+++.
T Consensus 268 dRW~~vFr~l~~q~~~m---~esver~~~kl~~~ 298 (683)
T PF08580_consen 268 DRWNIVFRNLGRQAQKM---CESVERSLSKLQEA 298 (683)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc
Confidence 33333334445555554 55666664444433
No 154
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=30.29 E-value=2.3e+02 Score=25.31 Aligned_cols=56 Identities=36% Similarity=0.387 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-hhhhh-cCcchhhhH-HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 021778 5 YKKLYDKYDK-LKKKK-FSELDNLNK-EQELKFTTYVNAADKYIEFLRSENEKLCAQVN 60 (307)
Q Consensus 5 y~KLydKYt~-LKkrK-lsd~d~lnk-eQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~ 60 (307)
|.++.+|+.+ +++++ ++.=|.-.- +-|.++..--..=+.+-++|++|.-.|.+...
T Consensus 126 yd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~ 184 (216)
T cd07599 126 YDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALAD 184 (216)
T ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6677777777 66653 332111111 11444444444445555566666666666543
No 155
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.94 E-value=1.6e+02 Score=25.34 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=22.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 27 NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 27 nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
..+.-..+..-.....+-+..|+.++..|..++..|.+.+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3343344443455555556666666666666666665555
No 156
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.72 E-value=3.7e+02 Score=27.99 Aligned_cols=67 Identities=16% Similarity=0.314 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhhhhhcCcchhhhHHHHh--hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 2 ESLYKKLYDKYDKLKKKKFSELDNLNKEQEL--KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 2 E~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~--kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
+..|.++..+|+.+-..++.+++.+=-+-|. .-.+|. .|...+.+++..-+.+.+++..++.+|..+
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~-ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFK-KAKQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999997765433322 222222 334445555555555555555555555444
No 157
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.60 E-value=2.7e+02 Score=27.55 Aligned_cols=61 Identities=31% Similarity=0.424 Sum_probs=33.8
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHH
Q 021778 46 EFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEEN------QKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 46 e~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~------~Knk~L~eEV~kLq~Ll~ 106 (307)
..|+.+-+.++++|.+|+.+-..|.+.-+....+|..+.=.-. +--+.+..+|.+|-..++
T Consensus 58 ~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 58 QELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 3555556666666666655555554444444444444432222 123567788888888777
No 158
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=29.58 E-value=1.8e+02 Score=22.05 Aligned_cols=61 Identities=25% Similarity=0.462 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhhhhhcCcc------hhh--hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 3 SLYKKLYDKYDKLKKKKFSEL------DNL--NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 3 ~Ly~KLydKYt~LKkrKlsd~------d~l--nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
.+|.+|+.+|-.+|+ .+..+ +.+ +.+-..--..+..+...+|.+| ++.+.+...+.+|+..
T Consensus 22 ~~f~~lF~~~P~~~~-~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l-~~~~~l~~~l~~lg~~ 90 (110)
T PF00042_consen 22 EFFQRLFEEYPDYKK-LFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNL-DDPESLEAMLRKLGRR 90 (110)
T ss_dssp HHHHHHHHHSGGGGG-GGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTT-TSTHGHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHh-hcccccccchHHHHhccchHHHHHHHHHHHHHHHHHcc-CChHhHHHHHHHHHHH
Confidence 579999999998854 33322 222 1222333345667888899999 6777888887777543
No 159
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.09 E-value=4.7e+02 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+.|.+....+.+.+..|...|..-|
T Consensus 231 ~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 231 EQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544444433
No 160
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=28.95 E-value=1.5e+02 Score=30.54 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
...+|+-++|..|+.++++.++.- .-|+.| + .+|+.|-..|+.|+....
T Consensus 273 tILk~s~dYIr~Lqq~~q~~~E~~-------------------~rqk~l-e--~~n~~L~~rieeLk~~~~ 321 (411)
T KOG1318|consen 273 TILKASCDYIRELQQTLQRARELE-------------------NRQKKL-E--STNQELALRIEELKSEAG 321 (411)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------------------hhhhHH-H--hHHHHHHHHHHHHHHHHH
Confidence 356788888888888888777662 123333 2 889999999999998877
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.79 E-value=4.7e+02 Score=28.21 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=36.6
Q ss_pred cchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 22 ELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 22 d~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
|.+...+|=++-|..++...-.-|+.|+++|++|-+|+.+-
T Consensus 250 ~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea 290 (622)
T COG5185 250 NYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA 290 (622)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889999999999999999999999999997664
No 162
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.73 E-value=5.4e+02 Score=29.07 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCccc-ccc---CCCceEEEEEeecCCceeEEEeeecCCCccceeeEeeecchhhhhhhhhhhhhhhccc
Q 021778 216 LFQALIEYLLGMKLS-PYH---ESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLSLGTLERVALGWMMDEIMFS 291 (307)
Q Consensus 216 ~fq~L~e~llgMKlS-~~~---~~e~~cisa~H~sSGysFsLTwv~~~~gee~EllY~~~SLGTleRvApeWMRe~I~FS 291 (307)
=|+..++-++|=-|. ++- ++-..||.++-+.-+=.-|..+++..... ...+ .. + .-...+-+-+-|.|+
T Consensus 530 ~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~--~~~~-~~--~--~~g~~~~a~dli~~d 602 (1163)
T COG1196 530 KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL--RSLK-SD--A--APGFLGLASDLIDFD 602 (1163)
T ss_pred HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccc--cccc-cc--c--ccchhHHHHHHhcCC
Confidence 577788888884432 222 23455666665544444444333332210 0000 00 0 111222233678888
Q ss_pred CCcchHHHHhhh
Q 021778 292 TSMCPIFFERIS 303 (307)
Q Consensus 292 ~~McpvFFeRis 303 (307)
+.--|+|.--+.
T Consensus 603 ~~~~~~~~~~l~ 614 (1163)
T COG1196 603 PKYEPAVRFVLG 614 (1163)
T ss_pred HHHHHHHHHHhC
Confidence 876666654433
No 163
>PRK02224 chromosome segregation protein; Provisional
Probab=28.51 E-value=4.3e+02 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
..+..-+..++.+.+.|.+++..++.++..++
T Consensus 202 ~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~ 233 (880)
T PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQAR 233 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666665555555554
No 164
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.37 E-value=4.8e+02 Score=24.07 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 021778 13 DKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQ 58 (307)
Q Consensus 13 t~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~q 58 (307)
..+++|.|...-.........+..+++.+..|.+....+|..|.+.
T Consensus 137 ~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~ 182 (264)
T PF06008_consen 137 EEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEA 182 (264)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence 4577787777777777777778888888999988888888877555
No 165
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=28.15 E-value=2.9e+02 Score=21.47 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhhhhhcCcchhh------hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHH
Q 021778 3 SLYKKLYDKYDKLKKKKFSELDNL------NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQ 76 (307)
Q Consensus 3 ~Ly~KLydKYt~LKkrKlsd~d~l------nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q 76 (307)
.+|.+|+.+|-.+| ..+..+++. +.+-...-..++.+...+|.+|.+. +.|...+.+|+..=... .-..+.
T Consensus 25 ~~f~~lf~~~P~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-~~l~~~l~~lg~~H~~~-~v~~~~ 101 (140)
T cd01040 25 EFYERLFKAHPETR-ALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDL-EALKALLAKLGRKHAKR-GVDPEH 101 (140)
T ss_pred HHHHHHHHHChhHH-HHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHh-CCCHHH
Confidence 57999999999885 455554332 2333444466778888899998554 55777777776554443 336677
Q ss_pred HHHHHHHHHHHHhhh
Q 021778 77 CLHYQKLLMEENQKN 91 (307)
Q Consensus 77 ~~~~QkLLmEE~~Kn 91 (307)
......-|++-.++.
T Consensus 102 ~~~~~~~l~~~l~~~ 116 (140)
T cd01040 102 FKLFGEALLEVLAEV 116 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666543
No 166
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.61 E-value=3.1e+02 Score=26.63 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHH
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLL 84 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLL 84 (307)
....-.+.++-|..+..+.+.+..++++|.++-+++- --|-.++...||-|
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777777777777777777777766653 22345666666666
No 167
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.49 E-value=1.5e+02 Score=24.36 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH--HhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhh
Q 021778 35 TTYVNAADKYIEFL--RSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQK 90 (307)
Q Consensus 35 ~~~~sAaeelie~L--r~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~K 90 (307)
..=+++.|.-++|| +++-.+|.-.+.+++-+++.++..- +.+..-..||+|..-|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l-~~v~~~~~lLlE~~lk 104 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL-QGVSHQLDLLLENELK 104 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 33456677777777 7777777777777666666554332 4556666677765444
No 168
>PRK14127 cell division protein GpsB; Provisional
Probab=27.44 E-value=1.1e+02 Score=26.08 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=18.6
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 24 DNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 24 d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
-|.+.+.=-.|+.-| .+=++.|-.||.+|.+++..|
T Consensus 21 RGYd~~EVD~FLd~V---~~dye~l~~e~~~Lk~e~~~l 56 (109)
T PRK14127 21 RGYDQDEVDKFLDDV---IKDYEAFQKEIEELQQENARL 56 (109)
T ss_pred CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555565543 233445555666666655444
No 169
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.15 E-value=2.5e+02 Score=20.63 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
+..|+.|....+.|......|+.+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444333
No 170
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=27.15 E-value=1.6e+02 Score=31.93 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLK 63 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr 63 (307)
+.|+|.+|.+.=|++.+- ...+. |=++|+..+|--++.|-.||+.|+..=.-||
T Consensus 276 d~kv~krqQRmIKNResA--~~SRk---KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk 329 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESA--CQSRK---KKKEYMLGLEARLQALLSENEQLKKENATLK 329 (655)
T ss_pred CHHHHHHHHHHHhhHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 578999999777766554 12222 2345655555555544444444444433333
No 171
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.15 E-value=6.5e+02 Score=26.12 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH----------HHhhhhhhhhh
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQ----------VNNLKSEVDSI 69 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~q----------v~~Lr~Elasi 69 (307)
++..++..+.+-..+|..|-+.|... +..+.+++..+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~L 360 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESL 360 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHH
Confidence 46666666666666666666666665 55555555444
No 172
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.01 E-value=1.2e+02 Score=23.38 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=19.7
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhcc
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVDSIRS 71 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~ElasiRs 71 (307)
|.+|-++-..|..+|..|.+++..+|+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777774
No 173
>PF15205 PLAC9: Placenta-specific protein 9
Probab=26.86 E-value=1e+02 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHHH----HHHHHhhhHHHHHHHHhh
Q 021778 38 VNAADKY----IEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 38 ~sAaeel----ie~Lr~EN~~L~~qv~~L 62 (307)
.+++|+. ++||..|-..|+.++.+|
T Consensus 27 LdviEe~veKTVEhLeaEvk~LLg~leel 55 (74)
T PF15205_consen 27 LDVIEETVEKTVEHLEAEVKGLLGLLEEL 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544 569999999999998776
No 174
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=26.79 E-value=98 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=16.8
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhh
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
+.+|.+|++.|..++.+...|+.
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~ 27 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQ 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 67888999999999766544433
No 175
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.73 E-value=21 Score=37.53 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHH
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKL 83 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkL 83 (307)
|..|+.+|..|.++...|..++...++-+ .++..|++.
T Consensus 334 vk~Lee~N~~l~e~~~~LEeel~~~~~~~-~qle~~k~q 371 (713)
T PF05622_consen 334 VKELEEDNAVLLETKAMLEEELKKARALK-SQLEEYKKQ 371 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 55677777777777777777777665444 334444333
No 176
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.69 E-value=2.9e+02 Score=29.19 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHHhhhhhcCcchhhhHHHHhhHHHHHH---HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHH
Q 021778 10 DKYDKLKKKKFSELDNLNKEQELKFTTYVN---AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQC 77 (307)
Q Consensus 10 dKYt~LKkrKlsd~d~lnkeQE~kf~~~~s---Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~ 77 (307)
.+|.+|+++++.+...|-+-.+ +|..+.+ |..+.|..|+.+-....++ ++..++.+-.+..+-+
T Consensus 198 ~~v~~i~~~~ik~p~~i~~~~~-e~d~lk~e~~~~~~~i~~~~~~l~~~~~~---~~~~~~~lk~ap~~D~ 264 (555)
T TIGR03545 198 KRLEAIKKKDIKNPLELQKIKE-EFDKLKKEGKADKQKIKSAKNDLQNDKKQ---LKADLAELKKAPQNDL 264 (555)
T ss_pred HHHHHHHhccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhccHhHH
Confidence 4567777777776555544333 4443333 3333344444343333333 5555555544433333
No 177
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.59 E-value=5e+02 Score=23.71 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.3
Q ss_pred hhHHHHHHHHH
Q 021778 93 ALSEEVETLQK 103 (307)
Q Consensus 93 ~L~eEV~kLq~ 103 (307)
+.+.||.+|+.
T Consensus 156 ~~~~ei~~lks 166 (190)
T PF05266_consen 156 AKDKEISRLKS 166 (190)
T ss_pred HHHHHHHHHHH
Confidence 33566766653
No 178
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.38 E-value=2.4e+02 Score=30.69 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhhh
Q 021778 274 GTLERVALGWMMD 286 (307)
Q Consensus 274 GTleRvApeWMRe 286 (307)
|.|.+.-++|+++
T Consensus 734 G~Lr~~v~~~L~~ 746 (771)
T TIGR01069 734 GKLRKGVQELLKN 746 (771)
T ss_pred hHHHHHHHHHhcC
Confidence 7888888888875
No 179
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.34 E-value=3.2e+02 Score=22.69 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 4 LYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 4 Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
+=.-||--|..=--.|..- |-+-=|.+|..=+.....-+..|..||+.|..++..-|.|-..
T Consensus 20 vA~eLh~~YssKHE~KV~~---LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 20 VARELHALYSSKHETKVKA---LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHhhHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554332233322 4555666677777777777777778888888776666655443
No 180
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.29 E-value=3.1e+02 Score=23.77 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
.|+-||..|.+++.+--.||..+| ..--+.++.++.-|-.-......+..++...+..+
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~ 107 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEEL 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766666665554 12223344444444333334444444444443333
No 181
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=26.23 E-value=2.7e+02 Score=24.49 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNN 61 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~ 61 (307)
..++|-+|-|+-|++||.=|.+-+..
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s 103 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYS 103 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999888533
No 182
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=26.11 E-value=5e+02 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 29 EQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 29 eQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
..-..|++-.+.....++.+++..+.|..++.+|.++-
T Consensus 164 ~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~ 201 (247)
T PF14661_consen 164 AHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAEC 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666677777777777777764443
No 183
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=26.05 E-value=2.4e+02 Score=22.01 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=5.2
Q ss_pred HHHHhhhHHHHHH
Q 021778 46 EFLRSENEKLCAQ 58 (307)
Q Consensus 46 e~Lr~EN~~L~~q 58 (307)
..|+.||+.|..+
T Consensus 50 ~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 50 NKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 184
>PRK09039 hypothetical protein; Validated
Probab=25.63 E-value=3.3e+02 Score=26.73 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHH
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLL 84 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLL 84 (307)
---|.-|+.+.+.|++|+..|..+|+... .+.+.++++++..|
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566666666666555555555442 44455555555544
No 185
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=25.60 E-value=1.9e+02 Score=27.78 Aligned_cols=55 Identities=31% Similarity=0.388 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
|+-+=.||.|+|.+ ||+.=++-+.=|.+-.. +.++..-|+.||++|++.+-++-+
T Consensus 1 ykS~kkKy~Kmri~----Fd~~m~~~~~l~~~e~~-~~~~~kRl~~end~LLdlLld~N~ 55 (232)
T PF14612_consen 1 YKSWKKKYRKMRIK----FDQKMKESEELFREEQK-AEDTSKRLAEENDQLLDLLLDLNN 55 (232)
T ss_pred CchHHHHHHHHHHH----HHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455689888875 56666666666666554 457888999999999999766533
No 186
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.59 E-value=4.8e+02 Score=27.40 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=44.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh----------------hhhcccchHHHHHHHHHHH----HHHh
Q 021778 30 QELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV----------------DSIRSTSNEQCLHYQKLLM----EENQ 89 (307)
Q Consensus 30 QE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El----------------asiRs~kd~q~~~~QkLLm----EE~~ 89 (307)
.+..+.....++++-++.|..-.++|..+..+|-+++ ..+..--.+++..+++.+- ++.+
T Consensus 86 l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 86 VTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666555444 1222333455555555553 2556
Q ss_pred hhhhhHHHHHHHHHHHH
Q 021778 90 KNKALSEEVETLQKLLQ 106 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll~ 106 (307)
.+-+|.++|..|+++-+
T Consensus 166 ~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 166 ERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888888876654
No 187
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.55 E-value=1.6e+02 Score=27.62 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=14.9
Q ss_pred HHHHHHHHHH----HHHHhhhhhhHHHH
Q 021778 75 EQCLHYQKLL----MEENQKNKALSEEV 98 (307)
Q Consensus 75 ~q~~~~QkLL----mEE~~Knk~L~eEV 98 (307)
+++..||+.| ++=-++|..|..++
T Consensus 173 ekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 173 EKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677766 55566666666554
No 188
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.49 E-value=5.4e+02 Score=26.40 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=26.3
Q ss_pred hHHHHHHHHHH--HHHHh---------hhhhhHHHHHHHHHHHHhcC
Q 021778 74 NEQCLHYQKLL--MEENQ---------KNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 74 d~q~~~~QkLL--mEE~~---------Knk~L~eEV~kLq~Ll~E~~ 109 (307)
+.++.-|+..| ++|.. |.++-..||.+|...+..+.
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777 44422 45556889999999988776
No 189
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=25.49 E-value=2.9e+02 Score=25.49 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCA 57 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~ 57 (307)
|.++..|+.+|..|+-.|-..|. +.|.+|..-...=+.+-++|++|.-.|..
T Consensus 125 YD~~~~k~~kl~~K~~kd~~kL~-kae~el~~a~~~Ye~lN~~Lk~ELP~l~~ 176 (224)
T cd07591 125 YDAARAKVRKLIDKPSEDPTKLP-RAEKELDEAKEVYETLNDQLKTELPQLVD 176 (224)
T ss_pred HHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 67778888888766654422222 23333333333334444455555555544
No 190
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.40 E-value=6.3e+02 Score=31.10 Aligned_cols=104 Identities=27% Similarity=0.236 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh---cccchHHHHHHHH
Q 021778 6 KKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI---RSTSNEQCLHYQK 82 (307)
Q Consensus 6 ~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi---Rs~kd~q~~~~Qk 82 (307)
.+.=+.++...++|.+++-.++.+=+- -...+.-+...|..|....+.|.+++...|+..+-+ |++...++.+.+.
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~-e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLED-EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665555443322 233444455556666666666666554444433333 5666677777666
Q ss_pred HHHHH-------HhhhhhhHHHHHHHHHHHHhcCC
Q 021778 83 LLMEE-------NQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 83 LLmEE-------~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
.|-|- ...|+....||.+|+.-+.+.+.
T Consensus 1140 ~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1140 ELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66444 12455557788888887776654
No 191
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=25.34 E-value=1.6e+02 Score=27.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh---c----ccchHHH
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI---R----STSNEQC 77 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi---R----s~kd~q~ 77 (307)
|...+.+|.+|+.|+=.|-..|-+ |++-.+..+.+-+.|+.+ |..||=.+ | ..-=+-+
T Consensus 120 YDr~r~~~~kL~~K~~kde~KL~k------------ae~el~~Ak~~Ye~lN~~---L~~ELP~L~~~ri~f~~p~F~sl 184 (211)
T cd07588 120 YDSARHNLEALKAKKKVDDQKLTK------------AEEELQQAKKVYEELNTE---LHEELPALYDSRIAFYVDTLQSI 184 (211)
T ss_pred HHHHHHHHHHHHhcccccHhhHHH------------HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhhHHHHHHHHHH
Confidence 677788888888776655333332 444445555555555555 44454322 2 2333556
Q ss_pred HHHHHHHHHHHhhh
Q 021778 78 LHYQKLLMEENQKN 91 (307)
Q Consensus 78 ~~~QkLLmEE~~Kn 91 (307)
..+|..|..|+-|.
T Consensus 185 ~~~q~~F~~e~~~~ 198 (211)
T cd07588 185 FAAESVFHKEIGKV 198 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776664
No 192
>PHA00728 hypothetical protein
Probab=25.13 E-value=91 Score=27.85 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.0
Q ss_pred HHHHHHhhhHHHHHHHHhh
Q 021778 44 YIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 44 lie~Lr~EN~~L~~qv~~L 62 (307)
-++.|+.||++|..++.+|
T Consensus 6 eveql~keneelkkkla~l 24 (151)
T PHA00728 6 EVEQLKKENEELKKKLAEL 24 (151)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 4789999999999987666
No 193
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.08 E-value=2.3e+02 Score=24.19 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 021778 54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTAS 111 (307)
Q Consensus 54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~~ 111 (307)
.-..++.+|..+++.+-+.++++++..+.-+-.++ +.|..+|..|..+++.=...
T Consensus 7 ~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~---~~l~~~i~~l~~~l~~y~e~ 61 (149)
T PF07352_consen 7 WALRKIAELQREIARIEAEANDEIARIKEWYEAEI---APLQNRIEYLEGLLQAYAEA 61 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666667788887777776665 44588899999888854443
No 194
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=5.6e+02 Score=28.32 Aligned_cols=35 Identities=34% Similarity=0.326 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 74 NEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 74 d~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
..++++.--.|..+..|++-|.||+++|+.=+...
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778889999999999999999877743
No 195
>KOG3227 consensus Calcium-responsive transcription coactivator [Transcription]
Probab=24.97 E-value=1.2e+02 Score=29.02 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL 84 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL 84 (307)
+-|+.+-+||..|.--+-| +--..|-.||+.||.+|
T Consensus 23 ~~IQk~LdEN~~LI~~I~e------~Qn~Gk~~EC~qyq~~L 58 (231)
T KOG3227|consen 23 EQIQKMLDENKHLIQCIVE------SQNKGKLSECAQYQALL 58 (231)
T ss_pred HHHHHHHHhhhHHHHHHHH------hhccchHHHHHHHHHHH
Confidence 5688888999999877533 33478889999999987
No 196
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=24.96 E-value=4.8e+02 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHh
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRS 50 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~ 50 (307)
...|....++.-+.+|-.++.--+.+..-++++...++++|..|..
T Consensus 134 ~~~l~~~~~~~~~~~l~~lk~~g~~~~y~~~~~~~~a~~i~~~l~~ 179 (276)
T PF12889_consen 134 DAALEKINDERRKEQLEALKKEGKMIIYYMLKLMIDAEQIIDELQS 179 (276)
T ss_dssp HHHHHHHHHHHH------TTTTTHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444555555555677777888888888888888833
No 197
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=24.78 E-value=3.2e+02 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHH
Q 021778 3 SLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLR 49 (307)
Q Consensus 3 ~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr 49 (307)
.|..-+-.+++.|.++.+.+++.+..+.+.-...+...-+.+...+.
T Consensus 19 ~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~ 65 (143)
T PF05130_consen 19 ELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLA 65 (143)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888887777777777766555555444444444443
No 198
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.67 E-value=6.7e+02 Score=28.38 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCccccc
Q 021778 216 LFQALIEYLLGMKLSPY 232 (307)
Q Consensus 216 ~fq~L~e~llgMKlS~~ 232 (307)
-|+..+.+++|=-+-++
T Consensus 604 ~~~~~~~~~l~~t~Iv~ 620 (1163)
T COG1196 604 KYEPAVRFVLGDTLVVD 620 (1163)
T ss_pred HHHHHHHHHhCCeEEec
Confidence 46677778877544333
No 199
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.63 E-value=81 Score=22.94 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=17.7
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+|.++.+++.+++++++|++.+|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777788888888877777655
No 200
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.61 E-value=6.3e+02 Score=29.48 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
..+|+.-+..++.+...+.-.+.++++|+- .++-+++.....-..++.--.++..||++|++-++
T Consensus 401 l~~aK~~~~~~~t~~k~a~~k~e~~~~elk----~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~ 465 (1174)
T KOG0933|consen 401 LRDAKITLSEASTEIKQAKLKLEHLRKELK----LREGELATASAEYVKDIEELDALQNEVEKLKKRLQ 465 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555553 23344444444445566666677889999999888
No 201
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=3.6e+02 Score=28.44 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHH---HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHH
Q 021778 1 MESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTT---YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQC 77 (307)
Q Consensus 1 ME~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~---~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~ 77 (307)
|.++|+-+.+|++.|=.+|--- +.--+=-|..|.- -.-|+++-...--+|.+.|-.+++-|..||.|+|.+-+.|+
T Consensus 540 mdqiwsi~mek~dd~lq~~q~a-ekalrfyeiefe~ll~~e~aaee~lk~~~del~s~~~~~h~ledeles~r~gye~qi 618 (637)
T KOG4421|consen 540 MDQIWSIFMEKFDDLLQLKQQA-EKALRFYEIEFEHLLNCEEAAEEELKAKDDELASLGGALHMLEDELESTRIGYEEQI 618 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 5567777777776554433221 1111222333333 33455554444556777888899999999999999999998
Q ss_pred HHH
Q 021778 78 LHY 80 (307)
Q Consensus 78 ~~~ 80 (307)
.+.
T Consensus 619 gdl 621 (637)
T KOG4421|consen 619 GDL 621 (637)
T ss_pred hHH
Confidence 654
No 202
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.54 E-value=1.6e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
...++.-++.|+.||++|..++..|
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777665
No 203
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.53 E-value=2.5e+02 Score=31.53 Aligned_cols=64 Identities=28% Similarity=0.396 Sum_probs=37.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhh-----------hhcccchHHHHHHHHHH--HHHHhh-hhhh-------HHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVD-----------SIRSTSNEQCLHYQKLL--MEENQK-NKAL-------SEEVETL 101 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~Ela-----------siRs~kd~q~~~~QkLL--mEE~~K-nk~L-------~eEV~kL 101 (307)
..|+.+|+||.+|+..+.+-..++- -|+..-++-+++.+.+= +|+-.| |+.| +.||.||
T Consensus 462 k~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 462 KVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 4577889999999888766555542 23333344444444321 343332 2222 7899999
Q ss_pred HHHHH
Q 021778 102 QKLLQ 106 (307)
Q Consensus 102 q~Ll~ 106 (307)
+.|-.
T Consensus 542 ~eLtR 546 (861)
T PF15254_consen 542 RELTR 546 (861)
T ss_pred HHHHH
Confidence 98743
No 204
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.45 E-value=3.1e+02 Score=20.65 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.1
Q ss_pred chhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 021778 23 LDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNN 61 (307)
Q Consensus 23 ~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~ 61 (307)
.-+|..+|..++.....+.-.-+..++.+...++.++..
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ 77 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRA 77 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999998888888888888887777444
No 205
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.28 E-value=3.3e+02 Score=23.48 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHH
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQ 76 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q 76 (307)
.+.....|+.+|+....-+++|..+++.+|.+.|.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888888888888888888888776663
No 206
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.15 E-value=7.9e+02 Score=25.59 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhhhcCc-------chhh---hHHHHhhHHHHHH--------HHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 5 YKKLYDKYDKLKKKKFSE-------LDNL---NKEQELKFTTYVN--------AADKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd-------~d~l---nkeQE~kf~~~~s--------Aaeelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
+..|.++|..|||.=+.. ++.| =..=|.+|-.|.. +|.+.+..|+.+...|...+..+=.=+
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 567899999999875543 2333 3445667776653 578888899999888888866654444
Q ss_pred hhhcccchHHHHH
Q 021778 67 DSIRSTSNEQCLH 79 (307)
Q Consensus 67 asiRs~kd~q~~~ 79 (307)
..+...=-+|+.+
T Consensus 218 ~~l~~~~P~ql~e 230 (560)
T PF06160_consen 218 KELQKEFPDQLEE 230 (560)
T ss_pred HHHHHHhHHHHHH
Confidence 4444444444444
No 207
>PRK11020 hypothetical protein; Provisional
Probab=24.02 E-value=2.2e+02 Score=25.01 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
.|+.|..+|...+..+|-.++.....-|.+. =..|.+|+.+ |..||.+|+.......
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~---i~qf~~E~~~---l~k~I~~lk~~~~~~l 58 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEK---YAQFEKEKAT---LEAEIARLKEVQSQKL 58 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3566777777777777777776654444433 2345666655 4888888888777555
No 208
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.99 E-value=3.7e+02 Score=30.52 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 021778 28 KEQELKFTTYVNAADKY---IEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKL 104 (307)
Q Consensus 28 keQE~kf~~~~sAaeel---ie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~L 104 (307)
++.+.+-.+|-...++. +..++++...|.+++..++.+++.++........++++..-+=.++.+.+...+..|...
T Consensus 791 e~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 870 (1201)
T PF12128_consen 791 EERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQ 870 (1201)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 021778 105 LQ 106 (307)
Q Consensus 105 l~ 106 (307)
+.
T Consensus 871 l~ 872 (1201)
T PF12128_consen 871 LR 872 (1201)
T ss_pred HH
No 209
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.86 E-value=2.6e+02 Score=27.65 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
+.+|....++-++.|..+.++|.+++.+. -+.++.+-+-.+.-..+..+|..++.|+++..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~---------------~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKN---------------PKKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455555555555555555555554332 144444444444445567788888888775543
No 210
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.81 E-value=7e+02 Score=27.28 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHhhhh
Q 021778 2 ESLYKKLYDKYDKLKKK 18 (307)
Q Consensus 2 E~Ly~KLydKYt~LKkr 18 (307)
|.+|..+.+....++.+
T Consensus 170 e~~~~~l~e~~~~~~~~ 186 (908)
T COG0419 170 EKLSELLKEVIKEAKAK 186 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666544
No 211
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.43 E-value=1.8e+02 Score=30.80 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.+-|+.|+.+...|+.||++||++|++-
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999654
No 212
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.37 E-value=3.5e+02 Score=29.48 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=8.7
Q ss_pred hhhhhhhhhhhhh
Q 021778 274 GTLERVALGWMMD 286 (307)
Q Consensus 274 GTleRvApeWMRe 286 (307)
|.|.+.-++|+++
T Consensus 745 G~Lr~~v~~~L~~ 757 (782)
T PRK00409 745 GKLRKGVQEFLKK 757 (782)
T ss_pred hHHHHHHHHHHcC
Confidence 5666666777664
No 213
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.17 E-value=3e+02 Score=27.52 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred hhhcCcchhhhHHHHhhHHHHHHHH----HHHHH-------------HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHH
Q 021778 17 KKKFSELDNLNKEQELKFTTYVNAA----DKYIE-------------FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLH 79 (307)
Q Consensus 17 krKlsd~d~lnkeQE~kf~~~~sAa----eelie-------------~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~ 79 (307)
|-||-|-+.--+++|....++.+-. ||||+ +-|.|..+|..-|.-.|+-|+ +||.-+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~----ekDkGi-- 147 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA----EKDKGI-- 147 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----hhhhhH--
Q ss_pred HHHHHHHHHhhhhhhHH
Q 021778 80 YQKLLMEENQKNKALSE 96 (307)
Q Consensus 80 ~QkLLmEE~~Knk~L~e 96 (307)
||-|.|=+..|+-|+.
T Consensus 148 -QKYFvDINiQN~KLEs 163 (305)
T PF15290_consen 148 -QKYFVDINIQNKKLES 163 (305)
T ss_pred -HHHHhhhhhhHhHHHH
No 214
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=23.12 E-value=1.3e+02 Score=32.10 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
+|++.-=+-|+.||.+|+-+..++.++++||.-.
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~ 403 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRY 403 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556678888888888888877765544433
No 215
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.11 E-value=3.3e+02 Score=20.45 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=35.1
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 25 NLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 25 ~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
+++-.+-..+..|.++.+..|..++.+-+.+..++..++..+.
T Consensus 41 ~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~ 83 (123)
T PF02050_consen 41 GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQ 83 (123)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899999999999888888888888777766553
No 216
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.01 E-value=4.1e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=8.5
Q ss_pred HHHhhhhhcCcchhhhHHH
Q 021778 12 YDKLKKKKFSELDNLNKEQ 30 (307)
Q Consensus 12 Yt~LKkrKlsd~d~lnkeQ 30 (307)
+.+||+|.=.+++++.+..
T Consensus 313 l~~LkrKyg~s~e~l~~~~ 331 (563)
T TIGR00634 313 IKRLKRKYGASVEEVLEYA 331 (563)
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3444444444555544433
No 217
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.01 E-value=1.1e+02 Score=29.45 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
+.+..++-+..||.||++|+.+++.|..++
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888887775555
No 218
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=22.84 E-value=2.1e+02 Score=22.18 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred cccCCCceEEEEEeecCCceeEEEeeecCCCccceeeEeeec
Q 021778 231 PYHESEGRCVSALHQSTGYSFSLTWVKSKDGEEFELLYRVLS 272 (307)
Q Consensus 231 ~~~~~e~~cisa~H~sSGysFsLTwv~~~~gee~EllY~~~S 272 (307)
+...++.+-|.-.|.. -...+.|..+.+|+.+++++....
T Consensus 9 ~v~~G~~v~l~C~~~~--~~~~v~Wykq~~g~~~~~l~~~~~ 48 (110)
T cd05899 9 IKGRGQSVTLRCSQTS--GHDNMYWYRQDPGKGLQLLFYSNG 48 (110)
T ss_pred EEcCCCcEEEEEEECC--CCCEEEEEEECCCCCcEEEEEEcC
Confidence 3456777777777765 357899999999999999987765
No 219
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.67 E-value=3.7e+02 Score=22.50 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=38.4
Q ss_pred chhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 23 LDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 23 ~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
|.+|-... .+|..|+.-... ++.+..+.+.|..+...| |.-=-.++.++.+.+..+.+-...-+.|..+...+.
T Consensus 9 L~~Ll~d~-~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~l----Ae~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 9 LQELLSDE-EKLDAFVKSLPQ-VQELQQEREELLAENEEL----AEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp HHHHHHH--HHHHHHGGGGS---HHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCH-HHHHHHHHcCHH-HHHHHHHHHHHHHHHHHH----HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444332 446666655544 555666666666665544 222233345566655555555555555566665555
Q ss_pred HHHH
Q 021778 103 KLLQ 106 (307)
Q Consensus 103 ~Ll~ 106 (307)
+-++
T Consensus 83 ~~~~ 86 (150)
T PF07200_consen 83 QQQD 86 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 220
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.63 E-value=9.7e+02 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhh
Q 021778 5 YKKLYDKYDKLKK 17 (307)
Q Consensus 5 y~KLydKYt~LKk 17 (307)
|..+.++|..|+.
T Consensus 206 ~~e~~~~~~~l~~ 218 (1164)
T TIGR02169 206 EREKAERYQALLK 218 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555443
No 221
>PRK12705 hypothetical protein; Provisional
Probab=22.62 E-value=9.2e+02 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHHhcCccccccCCCceEEEE
Q 021778 220 LIEYLLGMKLSPYHESEGRCVSA 242 (307)
Q Consensus 220 L~e~llgMKlS~~~~~e~~cisa 242 (307)
-||.+-|-=|-+++..+-+.||.
T Consensus 223 ~~E~~tGvdliiddtp~~V~ls~ 245 (508)
T PRK12705 223 AFEGLTGVDLIIDDTPEAVVISS 245 (508)
T ss_pred HHHHhhCCceEecCCccchhhcc
Confidence 35666677777777776665553
No 222
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=22.59 E-value=5.8e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHH
Q 021778 79 HYQKLLMEENQ---KNKALSEEVETLQKLLQ 106 (307)
Q Consensus 79 ~~QkLLmEE~~---Knk~L~eEV~kLq~Ll~ 106 (307)
.+|+++.+-+. +.+-|-.||++|..-.+
T Consensus 1079 rakqkei~k~L~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1079 RAKQKEIDKILKEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444433 44556778888888877
No 223
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.38 E-value=5e+02 Score=31.89 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=44.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhc----------ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIR----------STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiR----------s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
.|+.|+..+-.+|.+|+.+++.++ -..++.+.+++.-|-++..|.+.|..-..||-+.+++-
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~l 1025 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDL 1025 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777776652 33566777777778888888888888888888877743
No 224
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.29 E-value=7.8e+02 Score=25.80 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHHHHH
Q 021778 90 KNKALSEEVETLQKLL 105 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll 105 (307)
+-+++.++|+++++.+
T Consensus 450 ~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 450 QLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555544
No 225
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=21.95 E-value=24 Score=33.69 Aligned_cols=11 Identities=55% Similarity=0.936 Sum_probs=9.2
Q ss_pred EEeecCCceeE
Q 021778 242 ALHQSTGYSFS 252 (307)
Q Consensus 242 a~H~sSGysFs 252 (307)
.+|+||||+|.
T Consensus 265 ~v~PsTGYs~~ 275 (374)
T PF05834_consen 265 MVKPSTGYSFA 275 (374)
T ss_pred CCCCcccHHHH
Confidence 46899999985
No 226
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=21.87 E-value=1.8e+02 Score=29.18 Aligned_cols=55 Identities=13% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVE 99 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~ 99 (307)
+-|=-|+.++++|.++++++..||.+ +.|+=++|.-...|++.....-.+++|.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~--~~k~L~faqekn~LlqslLddaniD~~y~ 229 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEI--TKKDLKFAQEKNALLQSLLDDANIDSEYV 229 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 55667899999999999999888887 34444555544555555444444455544
No 227
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.78 E-value=6.7e+02 Score=26.28 Aligned_cols=68 Identities=18% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcc--cc-hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRS--TS-NEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs--~k-d~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
...++-++.|..+.++|.+++.+|..+|+.--. +. ..++.+.++.+-+-...-.++.++-+.|...+.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777888888888777777765321 21 125666666665555555566666666665554
No 228
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=21.68 E-value=2.5e+02 Score=31.18 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhc--ccchHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 021778 48 LRSENEKLCAQVNNLKSEVDSIR--STSNEQCLHYQKLLME-ENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 48 Lr~EN~~L~~qv~~Lr~ElasiR--s~kd~q~~~~QkLLmE-E~~Knk~L~eEV~kLq~Ll~ 106 (307)
+..|-++|..++..|.+|++.++ -..++=+.++-....+ |.+|-.++.+++++|++.++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~ 988 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIE 988 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777666766666653 1111212222222222 22233455556666665554
No 229
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.54 E-value=2.2e+02 Score=26.20 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNK 92 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk 92 (307)
+++.++|+.|..+.+.|.+++.+|...+...+++ +..|++....|....+
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae----~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQAD----FENYKRRIQKENEAAE 82 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5666777778888888888888887776555543 5567777766665443
No 230
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.42 E-value=6.4e+02 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhhh
Q 021778 3 SLYKKLYDKYDKLKK 17 (307)
Q Consensus 3 ~Ly~KLydKYt~LKk 17 (307)
..+..|++..++|.+
T Consensus 34 ~r~~~i~e~i~~Le~ 48 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEK 48 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566667777664
No 231
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.40 E-value=4.7e+02 Score=22.91 Aligned_cols=18 Identities=56% Similarity=0.756 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 021778 90 KNKALSEEVETLQKLLQE 107 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll~E 107 (307)
+++.+++||++|++-++.
T Consensus 155 ~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 344446666666665553
No 232
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=21.35 E-value=50 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=16.5
Q ss_pred CCCceEEEEEeecCCceeEEEe
Q 021778 234 ESEGRCVSALHQSTGYSFSLTW 255 (307)
Q Consensus 234 ~~e~~cisa~H~sSGysFsLTw 255 (307)
.++.|++.+.|.-+||||...|
T Consensus 32 sNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 32 SNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp -SSSEEEEEETTSBEEEEES-T
T ss_pred eCCcEEEEEcCCCceeeccccc
Confidence 3568999999999999865443
No 233
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.26 E-value=2.4e+02 Score=31.71 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=37.9
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQK-NKALSEEVETLQKL 104 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~K-nk~L~eEV~kLq~L 104 (307)
.+-|+.-|++|+.-+..++.|=.-+| -+||+++.+-.+.+=.|+-+ .-++++-..+++.+
T Consensus 450 ~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~ 513 (861)
T PF15254_consen 450 QELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSL 513 (861)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777666666644443 67888888888888555443 34555555555544
No 234
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.19 E-value=5.3e+02 Score=26.12 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 74 NEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 74 d~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
.+++.+++..+.+=.++-+++.+++.+|+.-++.-..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566667777777777888899999999888775443
No 235
>PHA02620 VP3; Provisional
Probab=21.07 E-value=31 Score=34.72 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=13.8
Q ss_pred eeeEeeecc-hhhhhhhhhhhh
Q 021778 265 ELLYRVLSL-GTLERVALGWMM 285 (307)
Q Consensus 265 EllY~~~SL-GTleRvApeWMR 285 (307)
|..+++..= |--.|+||+||-
T Consensus 276 e~Ve~~~aPGGA~QR~aPDWML 297 (353)
T PHA02620 276 EFIEKTIAPGGANQRTAPQWML 297 (353)
T ss_pred CeeeeccCCCccccccCchHHH
Confidence 344443332 567999999994
No 236
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=21.00 E-value=1.7e+02 Score=31.84 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhc--ccchHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHH
Q 021778 48 LRSENEKLCAQVNNLKSEVDSIR--STSNEQCLHYQKLLMEENQ-KNKALSEEVETLQKLLQ 106 (307)
Q Consensus 48 Lr~EN~~L~~qv~~Lr~ElasiR--s~kd~q~~~~QkLLmEE~~-Knk~L~eEV~kLq~Ll~ 106 (307)
+..|.++|..++..|.+|++.++ -..++=+.++-....+..+ |-+++.+++.+|++.+.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~ 870 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLA 870 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777763 3333334445445544444 44677788888877765
No 237
>PRK01156 chromosome segregation protein; Provisional
Probab=20.98 E-value=1.1e+03 Score=25.52 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhh
Q 021778 4 LYKKLYDKYDKLKK 17 (307)
Q Consensus 4 Ly~KLydKYt~LKk 17 (307)
.|.++-+.+..++.
T Consensus 167 ~~~~~~~~~~~~~~ 180 (895)
T PRK01156 167 NYDKLKDVIDMLRA 180 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554444
No 238
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=20.86 E-value=2.7e+02 Score=25.73 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNN 61 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~ 61 (307)
-.++=.+|.+||-=+.-. |..-++=.+.+..-+.-++++.+--..+.++|...+.+
T Consensus 68 VD~~ek~y~slk~v~~~~-~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~ 123 (172)
T KOG3366|consen 68 VDKYEKKYDSLKPVPVDE-DKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEK 123 (172)
T ss_pred HHHHHHHHHhccccCCCH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888422222 33334444445555555555555555555555555433
No 239
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.84 E-value=3.2e+02 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 021778 91 NKALSEEVETLQKLLQ 106 (307)
Q Consensus 91 nk~L~eEV~kLq~Ll~ 106 (307)
|..|-+|+.+|+++..
T Consensus 53 N~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 53 NIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666653
No 240
>PRK14127 cell division protein GpsB; Provisional
Probab=20.83 E-value=2.8e+02 Score=23.59 Aligned_cols=28 Identities=46% Similarity=0.520 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
+...-+..|+.+|.+|.+++.+++..++
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555666666666666655544444
No 241
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=20.69 E-value=4.6e+02 Score=27.27 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcc--cchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRS--TSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs--~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+.++ ++.|..+.++|.+++.+|..+++.-.. +.+.++.+.++.+-+=...-.++.++-+.|..+.+
T Consensus 565 ~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 633 (635)
T PRK11147 565 KLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEALKN 633 (635)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55555 888888888888888888888865432 21224555554444433344455666666654443
No 242
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=20.65 E-value=2.7e+02 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 71 STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 71 s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
..+-.+|+-||+-|.+=.-|-++|-.|+++|+.|.-
T Consensus 135 ~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~ 170 (513)
T KOG3819|consen 135 GAMLPEVAGYQQKLYELENKQEELLRENLELKELCH 170 (513)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456688999999987777788999999999999865
No 243
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.51 E-value=3.8e+02 Score=25.68 Aligned_cols=42 Identities=33% Similarity=0.355 Sum_probs=26.5
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
++..||+.|++++.++ .+. ..+.+.|.+|=.+|++||.....
T Consensus 70 ~~~~en~~Lk~~l~~~------------~~~----------~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 70 DLALENEELKKELAEL------------EQL----------LEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHHhHHHHHHHHHH------------HHH----------HHHHHHHHHHHHHHHHHhCCccc
Confidence 5666788888875443 111 12345567788899999985543
No 244
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=20.50 E-value=86 Score=33.93 Aligned_cols=162 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCCCCCCCCCcchhhh
Q 021778 62 LKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTASSSKDDNNDNMQLYTPEGAQPTSGNQSKEKT 141 (307)
Q Consensus 62 Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~~~~k~~~~~n~~~~t~e~~~~~s~~~s~~mt 141 (307)
||.+|+.+-.+|++|+..-....-+-.+.. .+|+.+||.-+| ...|-.++. ..+...-+
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~---~~el~~Lk~~vq---------kLEDEKKFL---------~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESH---EEELNKLKSEVQ---------KLEDEKKFL---------NNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH---------HHHHHHHHH---------HHHHHHHh
Q ss_pred hhhhcccCCccchhhhhcccCCCCcccchhhhhccccccccccccc--hhhhhhhhhhcccccCCCCCCCCCCchhHHHH
Q 021778 142 RKRRRKFGSESESECMITASSRGQDDAIEGQSAKDLSKENVSWGAL--LNEQLAECCKRTIDTSGGGENDSGPANCLFQA 219 (307)
Q Consensus 142 ~Kr~r~~~~~ke~~~~i~~~~~~~~~s~e~~s~~~~~k~~~s~~~~--~~~q~leCc~r~~~~SG~~~~es~~~~~~fq~ 219 (307)
.+++|.....++...-......++..+..-..+...+..+...... -+...+.=-++..+ |++- +.=|.
T Consensus 61 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~k~~~~ep~~~~~~l~~~r~v~d-------etSl--f~D~l 131 (654)
T PF09798_consen 61 SSKRRKNVSSPSGTNSTSNSTSTPESSSAANTSEESSPKSKKREIEPKKPYVPLNPNRIVPD-------ETSL--FFDHL 131 (654)
T ss_pred hhhhccccccccccccccccccCCCcccccccccccchhhcccccCccccccccCcceecCC-------cHHH--HHHHH
Q ss_pred HHHHHhcCccccccCCCceEEEEEeecCCceeEE
Q 021778 220 LIEYLLGMKLSPYHESEGRCVSALHQSTGYSFSL 253 (307)
Q Consensus 220 L~e~llgMKlS~~~~~e~~cisa~H~sSGysFsL 253 (307)
..=.++|+|+++-.==+.+|+=-.|.-.+..|.+
T Consensus 132 ~~h~I~Gs~~ttie~LnkI~ld~~~~~~~~~~~i 165 (654)
T PF09798_consen 132 WNHKINGSKRTTIEILNKICLDYIDDFQFKNFKI 165 (654)
T ss_pred HHhhcccccccHHHHHhhhhhccchhccccceee
No 245
>smart00338 BRLZ basic region leucin zipper.
Probab=20.38 E-value=2.1e+02 Score=20.96 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
+...-+..|..|..+...|..+..+|+.+++.+
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777777765555443
No 246
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.35 E-value=6.2e+02 Score=22.53 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=38.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 27 NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 27 nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
+++.-.+|++-..+..+-|..-+.+-+.+...+..++..+..=-..=..-...++..|-.+.-.=..|..+|..++...
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 4555555655555555555555555555555555554444333333333445556666555544455555555554433
No 247
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.34 E-value=2e+02 Score=30.25 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=13.8
Q ss_pred HhhhhhhHHHHHHHHHHH
Q 021778 88 NQKNKALSEEVETLQKLL 105 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll 105 (307)
.+|=++|++|+.+|+..+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344457899999998887
No 248
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.28 E-value=2.7e+02 Score=27.63 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEG 108 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~ 108 (307)
||--+.+-=|-|-+.|..++..| +.+.++|-+ .-.+|..||-.|++|+-|.
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~L--------e~rN~~LK~----------qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGL--------EKRNEELKD----------QASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999998888 666666622 2345677888888887653
No 249
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=3.7e+02 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCccccccCCCceEEE
Q 021778 217 FQALIEYLLGMKLSPYHESEGRCVS 241 (307)
Q Consensus 217 fq~L~e~llgMKlS~~~~~e~~cis 241 (307)
=+.|++-+|+..+.+...++.+-+.
T Consensus 476 ka~lierivrLQ~a~arknekiefL 500 (613)
T KOG0992|consen 476 KADLIERIVRLQLAIARKNEKIEFL 500 (613)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 4678888888888887777766543
No 250
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=20.20 E-value=3.8e+02 Score=27.51 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=13.6
Q ss_pred HHHHhhHHHHH-------HHHHHHHHHHHh
Q 021778 28 KEQELKFTTYV-------NAADKYIEFLRS 50 (307)
Q Consensus 28 keQE~kf~~~~-------sAaeelie~Lr~ 50 (307)
+-++..|..|- ++-+.+|+.||+
T Consensus 231 ~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 231 ESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 34556666666 445566666665
No 251
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=20.18 E-value=1.5e+02 Score=31.17 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=38.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHH
Q 021778 28 KEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLME 86 (307)
Q Consensus 28 keQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmE 86 (307)
+|---|=++|+.+.|.-+..--.||.+|-.||.+|..+=.++- +||.++|+++..
T Consensus 264 QESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl----~qL~klQt~v~q 318 (472)
T KOG0709|consen 264 QESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLL----AQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHH----HHHHHHHHHHhh
Confidence 4444566788888888888888889999888888755544443 566666666544
No 252
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.17 E-value=6.3e+02 Score=23.27 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHH----------HHHhhhHHH----------HHHHHhhhhhhhhh
Q 021778 10 DKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIE----------FLRSENEKL----------CAQVNNLKSEVDSI 69 (307)
Q Consensus 10 dKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie----------~Lr~EN~~L----------~~qv~~Lr~Elasi 69 (307)
+++.+|.+.=.-..+.+.++++.--..|-+-..+|=. +|+.+...| -..+..|+.|+..+
T Consensus 18 ~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 18 KKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666666444444333332222 222222222 12244455555555
Q ss_pred cccchHHHHHHHHHHHHHHh
Q 021778 70 RSTSNEQCLHYQKLLMEENQ 89 (307)
Q Consensus 70 Rs~kd~q~~~~QkLLmEE~~ 89 (307)
+..-...+.+.+..|+.|..
T Consensus 98 ~~e~~~~l~~~~~qfl~EK~ 117 (206)
T PF14988_consen 98 RAEHAEKLQEAESQFLQEKA 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666655544
No 253
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.13 E-value=8.8e+02 Score=24.27 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 021778 75 EQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTAS 111 (307)
Q Consensus 75 ~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~~ 111 (307)
+++..++.-..+=++.=..+++|+++.|+-.+|+...
T Consensus 287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 287 EKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444444555557899999999999988875
Done!