Query 021778
Match_columns 307
No_of_seqs 26 out of 28
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emc_A Monopolin complex subun 96.5 0.022 7.7E-07 50.9 11.0 92 214-306 71-179 (190)
2 2xv5_A Lamin-A/C; structural p 91.8 0.15 5.1E-06 39.1 3.8 55 48-106 3-57 (74)
3 3n4s_A Monopolin complex subun 91.4 0.38 1.3E-05 40.1 6.1 91 215-306 7-114 (116)
4 3a2a_A Voltage-gated hydrogen 89.0 0.79 2.7E-05 34.2 5.4 43 40-107 8-50 (58)
5 1x8y_A Lamin A/C; structural p 88.7 0.73 2.5E-05 35.6 5.3 60 43-106 21-80 (86)
6 1jnm_A Proto-oncogene C-JUN; B 87.9 0.82 2.8E-05 33.1 4.9 36 35-70 21-56 (62)
7 1t2k_D Cyclic-AMP-dependent tr 87.9 0.75 2.6E-05 33.1 4.7 35 36-70 22-56 (61)
8 3c3g_A Alpha/beta peptide with 87.3 0.66 2.3E-05 31.3 3.7 20 88-107 13-32 (33)
9 1gk4_A Vimentin; intermediate 87.2 1 3.5E-05 34.4 5.3 60 43-106 19-78 (84)
10 3m48_A General control protein 86.4 0.67 2.3E-05 31.3 3.4 19 89-107 14-32 (33)
11 3c3f_A Alpha/beta peptide with 86.3 0.81 2.8E-05 31.1 3.7 19 89-107 15-33 (34)
12 1uo4_A General control protein 85.7 0.82 2.8E-05 31.0 3.6 20 88-107 14-33 (34)
13 2oxj_A Hybrid alpha/beta pepti 84.6 1.1 3.9E-05 30.3 3.8 19 89-107 15-33 (34)
14 2bni_A General control protein 84.0 1.1 3.6E-05 30.5 3.5 20 88-107 14-33 (34)
15 2ve7_A Kinetochore protein HEC 83.5 1 3.4E-05 41.8 4.4 50 21-70 163-212 (315)
16 3mov_A Lamin-B1; LMNB1, B-type 83.4 6.1 0.00021 31.2 8.3 60 43-106 30-89 (95)
17 1kd8_B GABH BLL, GCN4 acid bas 83.3 1.6 5.4E-05 30.0 4.1 19 89-107 15-33 (36)
18 1ci6_A Transcription factor AT 83.1 1.7 5.9E-05 31.8 4.7 34 36-69 23-56 (63)
19 3i00_A HIP-I, huntingtin-inter 83.0 5.1 0.00017 33.1 7.9 65 42-106 14-78 (120)
20 2wq1_A General control protein 82.9 1.4 4.8E-05 29.7 3.7 20 88-107 13-32 (33)
21 2hy6_A General control protein 82.4 1.8 6.1E-05 29.4 4.1 19 89-107 15-33 (34)
22 1go4_E MAD1 (mitotic arrest de 82.1 6.3 0.00021 31.9 8.0 67 36-106 12-92 (100)
23 3ol1_A Vimentin; structural ge 82.1 11 0.00039 30.3 9.6 74 34-107 18-108 (119)
24 3qh9_A Liprin-beta-2; coiled-c 81.9 5.4 0.00019 31.5 7.3 56 38-105 18-77 (81)
25 3oja_B Anopheles plasmodium-re 81.7 10 0.00034 36.0 10.6 70 34-106 507-579 (597)
26 3vmx_A Voltage-gated hydrogen 81.7 5.1 0.00018 28.9 6.5 42 41-107 2-43 (48)
27 3tnu_A Keratin, type I cytoske 81.5 6.6 0.00023 31.9 8.1 52 51-106 78-129 (131)
28 1gk6_A Vimentin; intermediate 81.1 1.1 3.8E-05 32.5 3.0 49 54-106 4-52 (59)
29 1hjb_A Ccaat/enhancer binding 80.3 1.7 5.8E-05 34.2 4.0 23 40-62 40-62 (87)
30 1dh3_A Transcription factor CR 80.3 2.5 8.6E-05 30.3 4.6 32 36-67 22-53 (55)
31 3tnu_B Keratin, type II cytosk 80.2 6.5 0.00022 31.8 7.6 49 54-106 79-127 (129)
32 1kd8_A GABH AIV, GCN4 acid bas 80.2 2.4 8.1E-05 29.1 4.1 19 89-107 15-33 (36)
33 3oja_A Leucine-rich immune mol 80.1 6.5 0.00022 36.7 8.6 57 6-70 413-469 (487)
34 1gu4_A CAAT/enhancer binding p 78.6 2.1 7.3E-05 33.0 4.0 31 40-70 40-70 (78)
35 2dfs_A Myosin-5A; myosin-V, in 78.4 8.4 0.00029 41.2 9.8 18 89-106 1023-1040(1080)
36 3hnw_A Uncharacterized protein 77.2 15 0.00051 30.6 9.1 72 32-104 58-132 (138)
37 2wt7_A Proto-oncogene protein 76.5 3.8 0.00013 29.7 4.7 32 36-67 23-54 (63)
38 3lay_A Zinc resistance-associa 76.4 6.8 0.00023 34.0 7.0 33 26-58 68-100 (175)
39 2yy0_A C-MYC-binding protein; 74.5 2.1 7.3E-05 30.8 2.8 27 44-70 20-46 (53)
40 2dgc_A Protein (GCN4); basic d 73.9 4.5 0.00015 29.7 4.5 32 36-67 30-61 (63)
41 1nkp_B MAX protein, MYC proto- 73.1 4.9 0.00017 30.1 4.7 38 32-69 36-73 (83)
42 1gd2_E Transcription factor PA 69.9 3.6 0.00012 31.2 3.2 30 41-70 41-70 (70)
43 3trt_A Vimentin; cytoskeleton, 69.6 21 0.00072 26.1 7.4 64 7-70 13-76 (77)
44 4f9l_D 20.1 anti-BTN3A1 antibo 65.2 2.9 9.9E-05 38.6 2.3 34 239-272 148-184 (259)
45 1hlo_A Protein (transcription 64.1 9.3 0.00032 28.5 4.5 34 32-65 46-79 (80)
46 1nlw_A MAD protein, MAX dimeri 62.8 11 0.00036 28.8 4.7 59 7-69 15-73 (80)
47 3ol1_A Vimentin; structural ge 62.1 49 0.0017 26.6 8.7 94 8-105 17-117 (119)
48 4etp_A Kinesin-like protein KA 60.5 26 0.0009 33.3 8.0 52 40-102 7-58 (403)
49 2j5u_A MREC protein; bacterial 60.3 5 0.00017 36.0 2.8 41 47-109 23-63 (255)
50 2v71_A Nuclear distribution pr 58.0 57 0.002 28.8 9.1 56 27-82 40-95 (189)
51 4f9p_D 103.2 anti-BTN3A1 antib 56.3 4.6 0.00016 37.2 2.0 36 239-274 17-55 (254)
52 3oja_B Anopheles plasmodium-re 55.7 86 0.0029 29.6 10.6 22 85-106 554-575 (597)
53 1nkp_A C-MYC, MYC proto-oncoge 55.6 16 0.00056 28.1 4.7 53 7-63 20-72 (88)
54 3swk_A Vimentin; cytoskeleton, 55.3 36 0.0012 26.1 6.6 53 44-107 8-60 (86)
55 1am9_A Srebp-1A, protein (ster 54.8 16 0.00054 27.6 4.4 34 35-68 42-75 (82)
56 1x8y_A Lamin A/C; structural p 54.4 62 0.0021 24.7 7.8 67 21-87 13-82 (86)
57 2v4h_A NF-kappa-B essential mo 53.6 89 0.0031 25.8 9.0 68 38-106 33-100 (110)
58 2jee_A YIIU; FTSZ, septum, coi 53.5 60 0.0021 25.4 7.6 37 38-74 15-51 (81)
59 2wuj_A Septum site-determining 53.5 15 0.00052 26.3 3.9 38 25-65 19-56 (57)
60 2v71_A Nuclear distribution pr 52.7 1.2E+02 0.0042 26.7 10.7 52 31-82 30-81 (189)
61 3mov_A Lamin-B1; LMNB1, B-type 52.1 44 0.0015 26.2 6.7 60 26-85 27-89 (95)
62 3s4r_A Vimentin; alpha-helix, 49.9 89 0.003 24.3 8.7 69 33-105 17-86 (93)
63 1wt6_A Myotonin-protein kinase 49.8 93 0.0032 24.5 8.4 61 32-107 10-70 (81)
64 2yy0_A C-MYC-binding protein; 49.0 23 0.00079 25.3 4.3 30 38-67 21-50 (53)
65 1cn3_F Fragment of coat protei 49.0 3.1 0.00011 27.0 -0.3 14 275-288 11-24 (29)
66 3oja_A Leucine-rich immune mol 49.0 48 0.0016 30.9 7.6 12 95-106 448-459 (487)
67 3s4r_A Vimentin; alpha-helix, 48.7 47 0.0016 25.9 6.4 54 2-62 29-82 (93)
68 1ci6_A Transcription factor AT 48.6 57 0.0019 23.6 6.4 32 37-68 17-48 (63)
69 1uix_A RHO-associated kinase; 48.5 35 0.0012 26.2 5.4 28 43-70 4-31 (71)
70 1nkp_B MAX protein, MYC proto- 45.5 32 0.0011 25.6 4.8 35 35-69 46-80 (83)
71 1t2k_D Cyclic-AMP-dependent tr 45.0 37 0.0013 24.1 4.9 31 39-69 18-48 (61)
72 3cve_A Homer protein homolog 1 44.9 27 0.00093 26.7 4.3 41 43-83 7-47 (72)
73 1i84_S Smooth muscle myosin he 44.6 1.1E+02 0.0036 32.8 10.2 32 37-68 872-903 (1184)
74 1ik9_A DNA repair protein XRCC 44.5 80 0.0027 27.9 7.9 28 42-69 138-165 (213)
75 3cvf_A Homer-3, homer protein 44.4 27 0.00094 27.1 4.3 41 43-83 13-53 (79)
76 1s1c_X RHO-associated, coiled- 44.3 45 0.0015 25.5 5.4 28 43-70 6-33 (71)
77 4a3a_A Amphiphysin; structural 44.2 1.5E+02 0.005 26.1 9.6 72 5-91 146-224 (243)
78 3o0z_A RHO-associated protein 43.0 1.7E+02 0.0058 25.5 10.3 77 30-106 35-114 (168)
79 2r2v_A GCN4 leucine zipper; co 42.3 50 0.0017 22.4 4.7 19 89-107 15-33 (34)
80 3mq7_A Bone marrow stromal ant 41.9 1.1E+02 0.0038 25.6 7.9 60 29-106 43-102 (121)
81 3l4q_C Phosphatidylinositol 3- 41.5 1.4E+02 0.0047 26.0 8.8 13 4-16 32-44 (170)
82 1kd8_A GABH AIV, GCN4 acid bas 41.5 38 0.0013 23.2 4.1 28 41-68 6-33 (36)
83 3sja_C Golgi to ER traffic pro 41.3 73 0.0025 24.0 6.1 52 52-109 8-59 (65)
84 1zxa_A CGMP-dependent protein 41.1 34 0.0012 25.9 4.3 42 28-69 10-51 (67)
85 3m48_A General control protein 41.0 29 0.00098 23.4 3.4 24 41-64 5-28 (33)
86 1nlw_A MAD protein, MAX dimeri 40.9 39 0.0013 25.6 4.7 34 35-68 46-79 (80)
87 2eqb_B RAB guanine nucleotide 40.2 74 0.0025 25.6 6.4 17 73-89 24-40 (97)
88 1gk4_A Vimentin; intermediate 37.7 1.2E+02 0.0042 22.8 7.0 63 24-86 14-79 (84)
89 4ath_A MITF, microphthalmia-as 37.6 97 0.0033 24.3 6.5 27 35-61 31-57 (83)
90 3u06_A Protein claret segregat 37.5 63 0.0022 30.9 6.6 52 47-102 7-58 (412)
91 2w83_C C-JUN-amino-terminal ki 36.3 1.1E+02 0.0038 23.9 6.6 22 39-60 5-26 (77)
92 1kd8_B GABH BLL, GCN4 acid bas 36.1 56 0.0019 22.3 4.3 28 40-67 5-32 (36)
93 3hnw_A Uncharacterized protein 35.7 1.8E+02 0.006 24.1 8.3 23 76-98 111-133 (138)
94 2oxj_A Hybrid alpha/beta pepti 35.7 49 0.0017 22.4 3.9 26 39-64 4-29 (34)
95 3ghg_A Fibrinogen alpha chain; 35.4 52 0.0018 33.6 5.8 22 65-86 132-153 (562)
96 3na7_A HP0958; flagellar bioge 35.2 1.2E+02 0.004 26.7 7.5 7 71-77 146-152 (256)
97 2wt7_B Transcription factor MA 35.1 28 0.00096 27.6 3.1 38 43-80 48-85 (90)
98 2wt7_A Proto-oncogene protein 34.1 92 0.0031 22.3 5.6 25 42-66 22-46 (63)
99 2xdj_A Uncharacterized protein 34.0 57 0.002 25.2 4.7 22 45-66 29-50 (83)
100 2jee_A YIIU; FTSZ, septum, coi 32.9 1.3E+02 0.0044 23.5 6.5 39 31-69 12-53 (81)
101 1zme_C Proline utilization tra 32.9 42 0.0014 23.2 3.5 25 43-67 44-68 (70)
102 3he5_B Synzip2; heterodimeric 32.1 1.4E+02 0.0048 21.4 6.1 43 5-59 5-47 (52)
103 2lf0_A Uncharacterized protein 31.6 1.1E+02 0.0039 25.6 6.4 58 47-110 7-64 (123)
104 2efr_A General control protein 31.2 1.1E+02 0.0037 26.2 6.3 60 41-104 96-155 (155)
105 3nmd_A CGMP dependent protein 30.6 67 0.0023 24.7 4.5 27 42-68 39-65 (72)
106 1jcd_A Major outer membrane li 30.4 61 0.0021 23.3 4.0 27 45-71 6-32 (52)
107 1ef1_C Moesin; membrane, FERM 29.7 26 0.00089 27.8 2.1 21 50-70 26-46 (90)
108 2ve7_C Kinetochore protein NUF 29.6 29 0.001 31.2 2.7 26 37-62 135-160 (250)
109 3i00_A HIP-I, huntingtin-inter 29.5 79 0.0027 25.9 5.1 18 54-71 44-61 (120)
110 3sjb_C Golgi to ER traffic pro 29.5 1.1E+02 0.0037 24.5 5.7 48 53-106 26-73 (93)
111 3jsv_C NF-kappa-B essential mo 29.4 1.8E+02 0.0061 23.4 6.9 32 75-106 47-78 (94)
112 3na7_A HP0958; flagellar bioge 29.0 2.9E+02 0.01 24.1 10.0 30 43-72 60-89 (256)
113 1t6f_A Geminin; coiled-coil, c 28.2 32 0.0011 23.6 2.1 16 42-57 20-35 (37)
114 3ghg_A Fibrinogen alpha chain; 28.1 77 0.0026 32.4 5.6 26 52-77 104-130 (562)
115 4dvz_A Cytotoxicity-associated 27.4 1.6E+02 0.0054 29.7 7.5 60 41-100 315-375 (569)
116 1uii_A Geminin; human, DNA rep 27.2 90 0.0031 24.6 4.8 23 37-59 54-76 (83)
117 3lay_A Zinc resistance-associa 26.9 2.3E+02 0.0079 24.3 7.8 30 40-69 75-104 (175)
118 1nkp_A C-MYC, MYC proto-oncoge 26.8 90 0.0031 23.8 4.7 15 47-61 70-84 (88)
119 3c3g_A Alpha/beta peptide with 26.4 89 0.0031 21.0 3.9 25 40-64 4-28 (33)
120 1go4_E MAD1 (mitotic arrest de 26.3 53 0.0018 26.5 3.4 24 39-62 71-94 (100)
121 1gk6_A Vimentin; intermediate 26.2 1.2E+02 0.0042 21.6 5.0 45 43-87 7-54 (59)
122 2fxo_A Myosin heavy chain, car 26.1 2.5E+02 0.0086 22.4 11.7 98 7-106 17-121 (129)
123 3mq9_A Bone marrow stromal ant 26.0 3E+02 0.01 25.3 9.0 17 90-106 444-460 (471)
124 3q0x_A Centriole protein; cent 26.0 48 0.0016 30.0 3.4 30 46-75 188-217 (228)
125 4dvy_P Cytotoxicity-associated 25.9 1.6E+02 0.0056 30.8 7.5 60 41-100 575-635 (876)
126 3c3f_A Alpha/beta peptide with 25.5 94 0.0032 21.0 3.9 25 40-64 5-29 (34)
127 1jnm_A Proto-oncogene C-JUN; B 25.5 51 0.0018 23.5 2.9 29 40-68 19-47 (62)
128 2nrj_A HBL B protein; enteroto 25.4 1.9E+02 0.0066 26.8 7.6 77 30-106 117-193 (346)
129 2dgc_A Protein (GCN4); basic d 25.2 59 0.002 23.7 3.2 18 89-106 44-61 (63)
130 2cly_C ATP synthase coupling f 24.8 54 0.0018 25.6 3.1 16 91-106 37-52 (77)
131 3tnu_A Keratin, type I cytoske 24.8 1.9E+02 0.0065 23.2 6.5 46 39-84 41-86 (131)
132 3a7o_A Autophagy protein 16; c 24.4 1.4E+02 0.0048 23.2 5.3 55 50-108 11-68 (75)
133 3hhm_B NISH2 P85alpha; PI3KCA, 24.0 4.6E+02 0.016 24.8 10.9 12 5-16 142-153 (373)
134 3rrs_A Cellobiose phosphorylas 23.8 27 0.00091 36.2 1.5 43 209-255 730-774 (822)
135 3he5_A Synzip1; heterodimeric 23.7 1.3E+02 0.0043 21.4 4.5 21 37-57 4-24 (49)
136 1ezj_A Nucleocapsid phosphopro 23.6 56 0.0019 27.0 3.1 33 47-83 66-98 (115)
137 3mq7_A Bone marrow stromal ant 23.0 1.2E+02 0.0043 25.3 5.1 31 42-72 70-100 (121)
138 3qde_A Cellobiose phosphorylas 22.6 27 0.00093 35.9 1.3 43 209-255 717-761 (811)
139 2ve7_A Kinetochore protein HEC 21.9 2.5E+02 0.0086 25.7 7.5 38 35-72 170-207 (315)
140 1p9i_A Cortexillin I/GCN4 hybr 21.9 79 0.0027 20.7 2.9 20 43-62 6-25 (31)
141 4avm_A Bridging integrator 2; 21.8 3.9E+02 0.013 23.1 11.5 79 5-91 141-219 (237)
142 1l8d_A DNA double-strand break 21.7 2.6E+02 0.009 21.1 8.6 16 91-106 87-102 (112)
143 1mba_A Myoglobin; oxygen stora 21.3 2.2E+02 0.0074 22.1 6.1 83 3-88 28-117 (147)
144 1gd2_E Transcription factor PA 21.2 1.2E+02 0.0042 22.7 4.4 32 37-68 30-61 (70)
145 1i84_S Smooth muscle myosin he 21.0 1.6E+02 0.0055 31.4 6.7 19 47-65 917-935 (1184)
146 1nfn_A Apolipoprotein E3; lipi 20.9 2.3E+02 0.0079 24.2 6.6 65 37-106 93-160 (191)
147 2bni_A General control protein 20.6 1.3E+02 0.0046 20.3 3.9 24 41-64 6-29 (34)
148 1gs9_A Apolipoprotein E, APOE4 20.6 2.9E+02 0.0099 23.2 7.1 20 39-58 95-114 (165)
149 3m9b_A Proteasome-associated A 20.4 1.8E+02 0.0061 26.8 6.1 29 71-102 67-95 (251)
150 2wvr_A Geminin; DNA replicatio 20.4 1.8E+02 0.0061 26.4 5.9 17 50-66 115-131 (209)
151 1wlq_A Geminin; coiled-coil; 2 20.3 1.6E+02 0.0056 23.1 5.0 17 50-66 38-54 (83)
152 2wl8_A Peroxisomal biogenesis 20.2 3.4E+02 0.012 22.4 7.3 43 6-52 36-79 (126)
153 2zxx_A Geminin; coiled-coil, c 20.2 2.2E+02 0.0075 22.1 5.7 43 50-107 34-76 (79)
No 1
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=96.49 E-value=0.022 Score=50.87 Aligned_cols=92 Identities=18% Similarity=0.352 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCccccccCCCceEEEEEeec--CC--------ceeEEEeeecCCCccceeeEeeecc-------hhh
Q 021778 214 NCLFQALIEYLLGMKLSPYHESEGRCVSALHQS--TG--------YSFSLTWVKSKDGEEFELLYRVLSL-------GTL 276 (307)
Q Consensus 214 ~~~fq~L~e~llgMKlS~~~~~e~~cisa~H~s--SG--------ysFsLTwv~~~~gee~EllY~~~SL-------GTl 276 (307)
.++.-=|++.|-|.++--..+++.=-+--+-|+ .| .-|-|..++.. .+++|+-|.+.=. ..|
T Consensus 71 i~i~~DL~e~LTGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k~~-~~~~e~~Y~P~l~~r~~ee~r~L 149 (190)
T 4emc_A 71 SEVIKDLYEYLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQ-AQVTEVIYAPVLKQRSTEELYSL 149 (190)
T ss_dssp HHHHHHHHHHHHSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEEEC------CCEEEEEECCSSSCHHHHHHH
T ss_pred hhHHHHHHHHccCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEeeccCC-CCCceEEEeccccccchHHHHHH
Confidence 466667888888888877777777666666666 46 66888887754 3468999998764 456
Q ss_pred hhhhhhhhhhhhcccCCcchHHHHhhhhcc
Q 021778 277 ERVALGWMMDEIMFSTSMCPIFFERISGVI 306 (307)
Q Consensus 277 eRvApeWMRe~I~FS~~McpvFFeRis~Vi 306 (307)
-.+-|++|.++|+|.-...+-||-||.+-+
T Consensus 150 ~~~LPdYL~d~ltFP~~~l~qFY~Kv~kaL 179 (190)
T 4emc_A 150 QSKLPEYLFETLSFPLSSLNQFYNKIAKSL 179 (190)
T ss_dssp HHHSCGGGGSCEEEETTHHHHHHHHHHHTT
T ss_pred HHhCcHHhhceeeecHHHHHHHHHHHHHHh
Confidence 778899999999999999999999998865
No 2
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=91.80 E-value=0.15 Score=39.09 Aligned_cols=55 Identities=27% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 48 LRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 48 Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
|..|.+.+..+|.+|..+|+.+|.++..|+.+||.||= -| -.|+-||..-.+||.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Lln---iK-l~Le~EIatYRkLLE 57 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD---IK-LALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHh
Confidence 56788899999999999999999999999999998872 11 257899999999997
No 3
>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET: 1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*
Probab=91.40 E-value=0.38 Score=40.13 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCccccccCCCceEEEEEeecC--C--------ceeEEEeeecCCCccceeeEeeecch-------hhh
Q 021778 215 CLFQALIEYLLGMKLSPYHESEGRCVSALHQST--G--------YSFSLTWVKSKDGEEFELLYRVLSLG-------TLE 277 (307)
Q Consensus 215 ~~fq~L~e~llgMKlS~~~~~e~~cisa~H~sS--G--------ysFsLTwv~~~~gee~EllY~~~SLG-------Tle 277 (307)
-+.-=|+|.|-|.++--..+++.=-+--+-|++ | .-|.|...+.. .+++|.-|.+.=.. .|-
T Consensus 7 ~i~~DL~e~LtGL~V~~~~ed~~~~~FD~~Qtg~nG~~~~d~~tl~ykL~i~k~~-~~~~e~~Y~P~l~~~~~e~~r~L~ 85 (116)
T 3n4s_A 7 EVIKDLYEYLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQ-AQVTEVIYAPVLKQRSTEELYSLQ 85 (116)
T ss_dssp HHHHHHHHHHHSEEEEEEEEC-CCEEEEEEECC-------CCCCEEEEEEEC-------CEEEEEEECTTCCHHHHHHHH
T ss_pred HhHHHHHHHccCcEEEEEEEcCCCeEEEEEEcCcCCCcCCcceEEEEEEEeccCC-cCCceEEEeccccccchhHHHHHH
Confidence 345568999999999888888877777777875 4 78999988855 35689999987554 567
Q ss_pred hhhhhhhhhhhcccCCcchHHHHhhhhcc
Q 021778 278 RVALGWMMDEIMFSTSMCPIFFERISGVI 306 (307)
Q Consensus 278 RvApeWMRe~I~FS~~McpvFFeRis~Vi 306 (307)
.+-|++|-++|+|--...+-||-||.+-+
T Consensus 86 ~~LPdYL~d~lsFP~~~l~qFY~Kv~kaL 114 (116)
T 3n4s_A 86 SKLPEYLFETLSFPLSSLNQFYNKIAKSL 114 (116)
T ss_dssp TTSCGGGGSCEEEEGGGHHHHHHHHHHHH
T ss_pred HHCcHhheeeEEecHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998754
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=89.01 E-value=0.79 Score=34.21 Aligned_cols=43 Identities=28% Similarity=0.487 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
.++.-+..|+.-|..|.++|++| +.+|++- +.||+||-+||+.
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~L-----------e~~c~e~--------------eQEieRL~~LLkq 50 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHL-----------EFSCSEK--------------EQEIERLNKLLRQ 50 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------------HHHHHHHHHHHHH
Confidence 46667889999999999999887 4556432 6799999999984
No 5
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=88.68 E-value=0.73 Score=35.58 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=46.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
++=..+..+.+.+..++.+|..+|+.+|.++..++.+||.||= -| -.|+-||-.-.+||.
T Consensus 21 e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln---vK-~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 21 DLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD---IK-LALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhHHHHHHHHHHHc
Confidence 3333556677778888888999999999999999999998871 11 157889999999886
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=87.90 E-value=0.82 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
..+.+..++-++.|..+|+.|..+|..|+.|++.++
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788889999999999999999988887776
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.87 E-value=0.75 Score=33.12 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+.+..++-+++|..+|..|..+|..|+.|++.++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999999999998877776554
No 8
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=87.32 E-value=0.66 Score=31.31 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.8
Q ss_pred HhhhhhhHHHHHHHHHHHHh
Q 021778 88 NQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll~E 107 (307)
..+|.+|..||.||+.|+.+
T Consensus 13 l~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 13 XSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhHHHHHHHHHHHHHcc
Confidence 35678889999999999874
No 9
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.18 E-value=1 Score=34.44 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=46.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+.=.+...+...+...+.+|..+|+.+|.++..++.+||.||= -| -.|+-||-.-.+||.
T Consensus 19 e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln---vK-~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 19 EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN---VK-MALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhHHHHHHHHHHHc
Confidence 3334455566677788888999999999999999999998871 11 157889999999986
No 10
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.41 E-value=0.67 Score=31.28 Aligned_cols=19 Identities=47% Similarity=0.569 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.+|.+|..||.||+.|+.+
T Consensus 14 ~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 14 SKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHhhc
Confidence 3566778888888888764
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.27 E-value=0.81 Score=31.06 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.+|.+|..||.||+.|+.+
T Consensus 15 ~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 15 SXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHHHHHHHHHHHHHhc
Confidence 4677889999999999874
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=85.73 E-value=0.82 Score=31.03 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.3
Q ss_pred HhhhhhhHHHHHHHHHHHHh
Q 021778 88 NQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll~E 107 (307)
..+|.+|..||.||++||.+
T Consensus 14 l~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 14 LSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHHcc
Confidence 35677889999999999864
No 13
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.56 E-value=1.1 Score=30.34 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=14.9
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.+|++|..||.||+.|+.+
T Consensus 15 ~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 15 XKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HhhhhHHHHHHHHHHHHhc
Confidence 4677788888888888864
No 14
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.98 E-value=1.1 Score=30.51 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=14.9
Q ss_pred HhhhhhhHHHHHHHHHHHHh
Q 021778 88 NQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll~E 107 (307)
..+|.+|..||.||+.|+.+
T Consensus 14 l~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 14 LSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHccHHHHHHHHHHHHHhcc
Confidence 35677889999999999875
No 15
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=83.45 E-value=1 Score=41.79 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=41.1
Q ss_pred CcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 21 SELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 21 sd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+++.+..+-..+|.....+...-|+.|+.+|++|.+++.+|+.+..+.+
T Consensus 163 d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 163 DSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp SCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788888888888888877788899999999999999999866654443
No 16
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.38 E-value=6.1 Score=31.23 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=47.0
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
++=..+..+-+.+...+..|..+++.+|.++..++.+||.|| +=. -.|+-||..-.+||.
T Consensus 30 e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-nvK---l~Le~EIatYrkLLE 89 (95)
T 3mov_A 30 ELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL-DVK---LALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHc
Confidence 333455567777888888899999999999999999999765 221 257889999999985
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=83.25 E-value=1.6 Score=29.96 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.++.+|..||.||+.|+.+
T Consensus 15 ~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 15 SKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcc
Confidence 4566778888888888764
No 18
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.09 E-value=1.7 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
...+..+.-++.|..+|..|..+|..|+.|++-+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888999999999988875554433
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.95 E-value=5.1 Score=33.05 Aligned_cols=65 Identities=25% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+.+|+||+.|++.|+..+..+..|-+.+=.+...++...+..|-+=..-....-.|.+.|+..++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999888877776665555555555555554332222222344444444444
No 20
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=82.86 E-value=1.4 Score=29.72 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=15.9
Q ss_pred HhhhhhhHHHHHHHHHHHHh
Q 021778 88 NQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 88 ~~Knk~L~eEV~kLq~Ll~E 107 (307)
+.++.+|..||.||++|+-+
T Consensus 13 l~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 13 TSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhHHHHHHHHHHHHHhcC
Confidence 35677789999999999864
No 21
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.40 E-value=1.8 Score=29.38 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.+|.+|..||.||++|+-+
T Consensus 15 ~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 15 SANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHhcc
Confidence 4577889999999999864
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.08 E-value=6.3 Score=31.94 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh--hccc------------chHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS--IRST------------SNEQCLHYQKLLMEENQKNKALSEEVETL 101 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas--iRs~------------kd~q~~~~QkLLmEE~~Knk~L~eEV~kL 101 (307)
+=+.+...-|+.|+.||++|++.+..|..+|.. +|-+ +.=--..+|.. -++ -..|..||++|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~-~~~---~e~Lq~E~erL 87 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL-RED---HSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH-HHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH-HHH---HHHHHHHHHHH
Confidence 456778888999999999999999999888855 2211 11111222221 122 23568899999
Q ss_pred HHHHH
Q 021778 102 QKLLQ 106 (307)
Q Consensus 102 q~Ll~ 106 (307)
+..++
T Consensus 88 r~~v~ 92 (100)
T 1go4_E 88 RGLLR 92 (100)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98876
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.06 E-value=11 Score=30.32 Aligned_cols=74 Identities=16% Similarity=0.334 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh----------cccchHHHHHHHHHHHHHH-------hhhhhhHH
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI----------RSTSNEQCLHYQKLLMEEN-------QKNKALSE 96 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi----------Rs~kd~q~~~~QkLLmEE~-------~Knk~L~e 96 (307)
|-.+...+...|..+..||.+|..++.+++..+... |..-+..++..+|.+=+.+ .+-+.|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556665555555544443333 2333344444444332222 24455666
Q ss_pred HHHHHHHHHHh
Q 021778 97 EVETLQKLLQE 107 (307)
Q Consensus 97 EV~kLq~Ll~E 107 (307)
||.=|+++.++
T Consensus 98 El~FLKk~hee 108 (119)
T 3ol1_A 98 EIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 24
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.87 E-value=5.4 Score=31.48 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhh----hhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEV----DSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~El----asiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
...+++||++++ .|+-.|.++.+|= -.++++| ++++-.|++|-.- +.||.+|+.-+
T Consensus 18 ~~~~E~L~qEi~----~Lr~kv~elEnErlQyEkKLKsTK-~El~~Lq~qLe~k-------d~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELR----HLKIKVEELENERNQYEWKLKATK-AEVAQLQEQVALK-------DAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhh-------HHHHHHHHHHH
Confidence 367788888765 4667776665553 2345666 5677777766432 44777776543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.75 E-value=10 Score=35.99 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 34 FTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 34 f~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+.......++..+.+..+++++..+++++..++..++ -..+.++.+.++.+-+-.+.+..+. .+|++|++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~---~~~~~l~~ 579 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR---QKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHH
Confidence 3334444444555555555555555544444444321 2233344444444444444443333 33444544
No 26
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=81.74 E-value=5.1 Score=28.92 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
|+.-|.-|+.=|+.|..+|.+| +..|. ++..||+||++||+.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~L-----------e~~c~--------------~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHL-----------EFSCS--------------EKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----------HHHcc--------------HHHHHHHHHHHHHHH
Confidence 5566888999999999998877 34442 236899999999983
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.52 E-value=6.6 Score=31.88 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 51 ENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 51 EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+-..+...|.+|..+|+.+|.++..++.+||.|| +=. =.|+-||-.-.+||.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll-~vK---l~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL-DVK---TRLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHC
Confidence 4445556677888999999999999999999655 211 157889999998884
No 28
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=81.06 E-value=1.1 Score=32.50 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+...+.+|..+++.+|.++..|+.+||.||= -| -.|+-||..-.+||.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Lln---iK-~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLN---VK-MALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHhHHHHHHHHHHHc
Confidence 45667778889999999999999999998771 11 257899999999997
No 29
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.34 E-value=1.7 Score=34.22 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~L 62 (307)
.++.-++.|..||..|..+|..|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999998776
No 30
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.30 E-value=2.5 Score=30.34 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
.|++-.+.-+..|..||..|..++..|..+++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888899999999999999988876653
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.24 E-value=6.5 Score=31.80 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 54 KLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 54 ~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.+...|.+|..+|+.+|.++..++.+||.|| +=. =.|+-||-.-.+||.
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-nvK---l~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELM-NTK---LALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHC
Confidence 3445577788888999999999999999655 221 157888988888874
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.22 E-value=2.4 Score=29.09 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.++.+|..||.||++|+.+
T Consensus 15 ~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 15 SEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhcc
Confidence 3556678888888888764
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.05 E-value=6.5 Score=36.73 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 6 KKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 6 ~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.++-++|..+.++ +.++++. +..+.+++.+.|++|+.||++|...+.++..+++..+
T Consensus 413 ~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 413 RAIVKRYEEMYVE-------QQSVQNN-AIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHhhc-chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3555566666544 3333333 7778888899999999999999998888766555544
No 34
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=78.63 E-value=2.1 Score=33.00 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
..+.-+..|..||..|..+|..|..|++.+|
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999999988876666554
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.42 E-value=8.4 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=9.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 021778 89 QKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~ 106 (307)
.|-..|.+|..+|++.+.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666655444
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.24 E-value=15 Score=30.60 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc---ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR---STSNEQCLHYQKLLMEENQKNKALSEEVETLQKL 104 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR---s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~L 104 (307)
+-.+.-+..|.|+.. ++.+++.|..++.++.+|+.++. .....++....+.+-+=.+++.+|..++.+|+.=
T Consensus 58 ~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 58 RTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777764 66778888888887777777764 3334455555555555555666666666666543
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.52 E-value=3.8 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
.+.+-.+.-++.|..+|..|..+|..|+.|++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777888888887766644443
No 38
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.36 E-value=6.8 Score=34.01 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=21.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 021778 26 LNKEQELKFTTYVNAADKYIEFLRSENEKLCAQ 58 (307)
Q Consensus 26 lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~q 58 (307)
|..||..++..+.++...=+..||.+-..++.+
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~E 100 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYE 100 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999888877776665555555444444443
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.55 E-value=2.1 Score=30.78 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 44 YIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 44 lie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
=++-|+.||+.|..+++.|..+++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888877765555544
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=73.88 E-value=4.5 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 36 TYVNAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 36 ~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
.+....+.-++.|..+|..|..+|..|+.+|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566677788888888888777766653
No 41
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=73.10 E-value=4.9 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..=...+..|-++|.+|+.+++.|..++.+|+.+...+
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677788899999999999888887775554433
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.91 E-value=3.6 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+...+.|..||+.|+++|..|..|+..+|
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455677888888888888877776543
No 43
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=69.56 E-value=21 Score=26.09 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 7 KLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 7 KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.+=..|..+-.+--.|+|..-+.+=..+..-+..--+-+.+.|.|.-+|+-+|..|..||.++|
T Consensus 13 eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 13 DVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677666665556555555443334444444445566778888888888888888887775
No 44
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=65.16 E-value=2.9 Score=38.63 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=27.8
Q ss_pred EEEEEeecCCceeE---EEeeecCCCccceeeEeeec
Q 021778 239 CVSALHQSTGYSFS---LTWVKSKDGEEFELLYRVLS 272 (307)
Q Consensus 239 cisa~H~sSGysFs---LTwv~~~~gee~EllY~~~S 272 (307)
+|..+-.+|||+|+ +.||-++||...||+=.+..
T Consensus 148 Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLEwvg~I~~ 184 (259)
T 4f9l_D 148 SVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINP 184 (259)
T ss_dssp CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECT
T ss_pred cEEEEEeeeCCCcccCcEEEEEECCCCceEEEeEEeC
Confidence 45555678999986 89999999999999866654
No 45
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.06 E-value=9.3 Score=28.51 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
..=...+..|-++|.+|+.+++.|.+++..|+.+
T Consensus 46 ~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345677888899999999999999998887543
No 46
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.80 E-value=11 Score=28.75 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 7 KLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 7 KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.|=+.|.+|+.- ++.+..-.+ +.=...+..|-++|.+|+.++.+|.+....|+.+...+
T Consensus 15 ~lk~~f~~Lr~~-vP~~~~~~k---~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 15 HLRLSLEKLKGL-VPLGPDSSR---HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHS-SCCCSSSCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777652 232211111 12246677788999999999998888877775555444
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.08 E-value=49 Score=26.59 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhH---HHHHHHHhhhhhhhh---hcccchHHHHHHH
Q 021778 8 LYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENE---KLCAQVNNLKSEVDS---IRSTSNEQCLHYQ 81 (307)
Q Consensus 8 LydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~---~L~~qv~~Lr~Elas---iRs~kd~q~~~~Q 81 (307)
+|.+|-.-=++++.++-.=+-.-++...++..+++++-.-..+|.. .+-..+..||+.+.. .|++-+.++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~i---- 92 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV---- 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH----
Confidence 4555555445566553333334466777777777777654444332 122223334443322 244444444
Q ss_pred HHHHHHHh-hhhhhHHHHHHHHHHH
Q 021778 82 KLLMEENQ-KNKALSEEVETLQKLL 105 (307)
Q Consensus 82 kLLmEE~~-Knk~L~eEV~kLq~Ll 105 (307)
.-|.||+. -.+--.+||.-||..+
T Consensus 93 esL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 93 ESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23445554 2233467887777544
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.53 E-value=26 Score=33.32 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
+.++-|.+|+.+..+|.+.++++ +.++.+.+..|.+|...++.|.-+|..|+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDT-----------ELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555667777777777776555 45667777888888888888888887775
No 49
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.26 E-value=5 Score=36.01 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
.|+.||++|++++.+|+. +....++|..|-.+|++||.-..
T Consensus 23 ~l~~eN~~Lk~e~~~l~~----------------------~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQ----------------------LESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ---CTTTTHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCcc
Confidence 578899999888765521 22233455778899999998443
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=58.04 E-value=57 Score=28.83 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=24.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHH
Q 021778 27 NKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQK 82 (307)
Q Consensus 27 nkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~Qk 82 (307)
.++=|+.+-.=+.+++.-+.+|+..|.+|...+..++..+....+.-..+....|+
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~ 95 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555444444444444444433333333333333
No 51
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=56.33 E-value=4.6 Score=37.25 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=28.1
Q ss_pred EEEEEeecCCceeE---EEeeecCCCccceeeEeeecch
Q 021778 239 CVSALHQSTGYSFS---LTWVKSKDGEEFELLYRVLSLG 274 (307)
Q Consensus 239 cisa~H~sSGysFs---LTwv~~~~gee~EllY~~~SLG 274 (307)
+|..+=.+|||+|+ +.||.++||...||+=.+..-|
T Consensus 17 Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~ 55 (254)
T 4f9p_D 17 SVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRS 55 (254)
T ss_dssp CEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTT
T ss_pred CeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCC
Confidence 34444578999987 8999999999999997665433
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.69 E-value=86 Score=29.63 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=9.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH
Q 021778 85 MEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 85 mEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
-+..++.+++.+|+..+.+=++
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3333444455555555533333
No 53
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.65 E-value=16 Score=28.06 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 021778 7 KLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLK 63 (307)
Q Consensus 7 KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr 63 (307)
+|=+.|..|+.- ++.+ .....+.=...+..|-++|.+|+.++..|..++..|+
T Consensus 20 ~ln~~f~~Lr~~-vP~~---~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 20 ELKRSFFALRDQ-IPEL---ENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHTT-CGGG---TTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777652 3332 1112334467778888999999999999988876663
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=55.32 E-value=36 Score=26.15 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 44 YIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 44 lie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
-|..|..||.+|.-++.++ ...+.+++.-+=+|...+.....+|..|++.+++
T Consensus 8 qi~~l~~e~~~l~~e~dn~-----------~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNL-----------AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556667777777776555 2445566666777777888888888888877763
No 55
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.76 E-value=16 Score=27.60 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
...+..|-++|.+|+.+++.|.+++..|+.++++
T Consensus 42 a~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 42 SAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788889999999999998888888666654
No 56
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.37 E-value=62 Score=24.65 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=47.5
Q ss_pred CcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh---hhhhcccchHHHHHHHHHHHHH
Q 021778 21 SELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE---VDSIRSTSNEQCLHYQKLLMEE 87 (307)
Q Consensus 21 sd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E---lasiRs~kd~q~~~~QkLLmEE 87 (307)
..++.--.+-|..|-.-++-....|.+|..+..+++......-.| |-.|...-|-+.+-|++||--|
T Consensus 13 ~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 345666677777777777777778888887777777765444333 3445677799999999999654
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.60 E-value=89 Score=25.77 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+.+|++.+..-+.+-++|.+.+..++..+.-| .-=..|+.=|..-|.-|-..++.+.+|++.|+.-+.
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I-~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKIVMETV-PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 45666666555555555554443333322111 011246777778888888888888999988876543
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.54 E-value=60 Score=25.38 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccch
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSN 74 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd 74 (307)
++.|=+-|.-|+-|.+.|.++-..|..+...+|+.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~ 51 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444454555555555555554444444444444333
No 59
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=53.50 E-value=15 Score=26.29 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=23.1
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 021778 25 NLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 25 ~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E 65 (307)
|.+.++=-. |++...+-++.|..||..|.+++..|..+
T Consensus 19 GY~~~EVD~---FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 19 GYDEDEVNE---FLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444333 44455666788899999999998777443
No 60
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.68 E-value=1.2e+02 Score=26.71 Aligned_cols=52 Identities=4% Similarity=0.054 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHH
Q 021778 31 ELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQK 82 (307)
Q Consensus 31 E~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~Qk 82 (307)
+..|.+|..-..+|=..|-.+.+.+-.+..+|++.++.++..-+.=-.+|+.
T Consensus 30 e~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 30 RDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877777777777666666666665555444433333333
No 61
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.09 E-value=44 Score=26.25 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=34.4
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh---hhhhhcccchHHHHHHHHHHH
Q 021778 26 LNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKS---EVDSIRSTSNEQCLHYQKLLM 85 (307)
Q Consensus 26 lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~---ElasiRs~kd~q~~~~QkLLm 85 (307)
--++-|..|..-.......|.+|..+..+++......-. +|-.|...-|-+++-|++||-
T Consensus 27 ~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 27 RIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444455544445555566666666655554332212 334456777888999999883
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.86 E-value=89 Score=24.27 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh-hhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021778 33 KFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEV-DSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLL 105 (307)
Q Consensus 33 kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~El-asiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll 105 (307)
+|..|.+. |-.|..+|..|..++..++..- ..+.+.=+.++.+.++.+-+=+..+-.|.-||..|+..+
T Consensus 17 RlAsyIdK----VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 17 RFANLIDK----VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566533 5678888888888877765432 223444567777777777766666666676766665544
No 63
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.84 E-value=93 Score=24.48 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 32 LKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 32 ~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
...+|+.+|.+.-|..= +. +..||..+|+ -....|..|-|=..+|++|..||++|++-+.+
T Consensus 10 ~~~leLQSALeaEIqAK----Q~-------i~EELs~vr~----~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTR----QS-------LSREMEAIRT----DNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CCHHHHHHHHHHHHHHH----HH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788877777531 12 2222322332 23445667777788999999999999988876
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.03 E-value=23 Score=25.31 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 38 VNAADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 38 ~sAaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
+.|.+--++.||.+++.|.+++.+|+++|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677778888888888777777764
No 65
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=49.03 E-value=3.1 Score=27.00 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=10.6
Q ss_pred hhhhhhhhhhhhhh
Q 021778 275 TLERVALGWMMDEI 288 (307)
Q Consensus 275 TleRvApeWMRe~I 288 (307)
+-.||.|+||---|
T Consensus 11 shqrvtpdwmlpli 24 (29)
T 1cn3_F 11 SHQRVTPDWMLPLI 24 (29)
T ss_dssp CCCCCEEGGGHHHH
T ss_pred cccccCchhhHHHH
Confidence 45799999996544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.03 E-value=48 Score=30.88 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021778 95 SEEVETLQKLLQ 106 (307)
Q Consensus 95 ~eEV~kLq~Ll~ 106 (307)
.+|-.||+++++
T Consensus 448 ~~~~~~~~~~~~ 459 (487)
T 3oja_A 448 AEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhhhhhhhhh
Confidence 334444444443
No 67
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.72 E-value=47 Score=25.86 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 2 ESLYKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 2 E~Ly~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
|+=++.|=.|...|+.+.-+. -...|-.+...+...|..+..||.+|.-++.+|
T Consensus 29 EqqN~~Le~~i~~l~~~~~~~-------~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 29 EQQNKILLAELEQLKGQGKSR-------LGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555443332 123355555666666666666666666665555
No 68
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.57 E-value=57 Score=23.61 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
|...-++.++.|..+.+.|...-.+|+.+++.
T Consensus 17 ~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 17 YRQKKRAEQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666554433
No 69
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=48.46 E-value=35 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.-|.+|.+|++.|+.++.++..++..++
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999877655555544
No 70
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.53 E-value=32 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.+|.....+-++.|..+.+.|..++..|+.+|+.+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777777777777776654
No 71
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.04 E-value=37 Score=24.12 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..-+++++.|..+.+.|..+-..|+++++.+
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777776666666666665555443
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.92 E-value=27 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKL 83 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkL 83 (307)
.=++.+..+|..|.++|..|...|..-++..+..=.+.+++
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999888777766665555444444443
No 73
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.64 E-value=1.1e+02 Score=32.79 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
-+...++.+..|+.+.+.|..++++++.++..
T Consensus 872 ~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~ 903 (1184)
T 1i84_S 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666665555543
No 74
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.46 E-value=80 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..-+.+|..+|++|....++|..++...
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447788888888888888887766444
No 75
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.40 E-value=27 Score=27.11 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKL 83 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkL 83 (307)
.=++.+..+|..|.++|..|...|..-|+..+..=.+.+++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888899999998888777766665554444444333
No 76
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=44.25 E-value=45 Score=25.55 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=20.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhc
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiR 70 (307)
.-|.+|..|++.|+.++.++..++..++
T Consensus 6 k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 6 KDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999777655555544
No 77
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=44.21 E-value=1.5e+02 Score=26.14 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh---c----ccchHHH
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI---R----STSNEQC 77 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi---R----s~kd~q~ 77 (307)
|.+...||.+|+.|+=.|-..|-+ |++-.+.-+.+-+.|+++ |..||-.+ | ..-=+-+
T Consensus 146 YD~~~~k~~kL~~K~~kd~~kl~k------------ae~el~~Ak~~Ye~lN~~---L~eELP~l~~~r~~~~~~~~~s~ 210 (243)
T 4a3a_A 146 YDSARHHLEALQSSKRKDESRISK------------AEEEFQKAQKVFEEFNVD---LQEELPSLWSRRVGFYVNTFKNV 210 (243)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHH------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHH------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777666444111111 233333344455555555 44555332 1 2223567
Q ss_pred HHHHHHHHHHHhhh
Q 021778 78 LHYQKLLMEENQKN 91 (307)
Q Consensus 78 ~~~QkLLmEE~~Kn 91 (307)
...|..|..|..|.
T Consensus 211 i~~Q~~f~~e~~k~ 224 (243)
T 4a3a_A 211 SSLEAKFHKEIAVL 224 (243)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899999998875
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=43.02 E-value=1.7e+02 Score=25.54 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 30 QELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQK---LLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 30 QE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~Qk---LLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+...+---+++++..+..|++-+..|..+-..|..+++.+.+.=+++-....+ +.-|=.-+...|.+|+.+++.-+.
T Consensus 35 ~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 35 SHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555444433333332222222111110 000001167777888887776443
No 79
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.30 E-value=50 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=14.9
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 021778 89 QKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~E 107 (307)
.++..|.-||.||++||-+
T Consensus 15 ~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 15 SKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHhcC
Confidence 3566678999999999865
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.85 E-value=1.1e+02 Score=25.62 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 29 EQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 29 eQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+-|+.-.+.-..+..|..-|..|...-.++|.+|+.|+.-+ +++=+..++||++|..--+
T Consensus 43 ~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~L------------------nq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 43 DVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL------------------NHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhch
Confidence 33444444455556666666666666555565554444322 3334445888888876544
No 81
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=41.53 E-value=1.4e+02 Score=26.04 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhh
Q 021778 4 LYKKLYDKYDKLK 16 (307)
Q Consensus 4 Ly~KLydKYt~LK 16 (307)
-|..||+.||++.
T Consensus 32 ~yd~l~e~y~r~s 44 (170)
T 3l4q_C 32 EYDQLYEEYTRTS 44 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4889999999876
No 82
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.49 E-value=38 Score=23.17 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
.++-|++|-.+|..|-.+|..|++.+.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4566777777777777777777665543
No 83
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.27 E-value=73 Score=24.05 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 021778 52 NEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGT 109 (307)
Q Consensus 52 N~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~ 109 (307)
-..|..++-.|+.|+.+|= ..|++|++=|| .||=--|.+||++|.+-++-.+
T Consensus 8 ~~~l~~E~~~lk~E~~stS--aQDeFAKWaKL----~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 8 YLAKVKERHELKEFNNSIS--AQDNYAKWTKN----NRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSC--TTTTHHHHHHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc--hHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccc
Confidence 3455566666666666653 45788888877 5666778899999988887443
No 84
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.07 E-value=34 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 28 KEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 28 keQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
..++..|...+.+=++.|..|..+++.=.+.+.+||+++.-.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777776666666666665555433
No 85
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.03 E-value=29 Score=23.37 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
.|+-+++|..+|..|..+|..|++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466788888888888888877744
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.95 E-value=39 Score=25.56 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
.+|.....+-...|..|++.|..+...|+.+|..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777888888888877777777653
No 87
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.25 E-value=74 Score=25.62 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHHHHHh
Q 021778 73 SNEQCLHYQKLLMEENQ 89 (307)
Q Consensus 73 kd~q~~~~QkLLmEE~~ 89 (307)
.+.++...+..|-+|..
T Consensus 24 ~~~e~~~L~~~l~eE~~ 40 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENE 40 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 88
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=37.69 E-value=1.2e+02 Score=22.78 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=40.4
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh---hhhhcccchHHHHHHHHHHHH
Q 021778 24 DNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSE---VDSIRSTSNEQCLHYQKLLME 86 (307)
Q Consensus 24 d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~E---lasiRs~kd~q~~~~QkLLmE 86 (307)
+.--.+-|..+-.-+..+...|.+|..+..+++......-.| |-.|...-|-+.+-|++||--
T Consensus 14 E~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 14 ERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 444455566665556666667777777766666664433333 334467778999999999843
No 89
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=37.62 E-value=97 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNN 61 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~ 61 (307)
-..++++=|+|.+|+.||+++.+.-..
T Consensus 31 g~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 31 GTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999888433
No 90
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.49 E-value=63 Score=30.94 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
.|+.|.++|++++.+|..++..+ ..++.+....|.+|...++.|.-+|..|+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~----~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQ----AAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444443333222 22333334445555566666666665554
No 91
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.34 E-value=1.1e+02 Score=23.86 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVN 60 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~ 60 (307)
..|-.-|++|-.||.+|++-=|
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKN 26 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKN 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888877633
No 92
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.14 E-value=56 Score=22.33 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
-.++=|++|..+|..|-.+|..|++-+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3456667777777777777776655443
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.75 E-value=1.8e+02 Score=24.11 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHH
Q 021778 76 QCLHYQKLLMEENQKNKALSEEV 98 (307)
Q Consensus 76 q~~~~QkLLmEE~~Knk~L~eEV 98 (307)
++.++|+.+-+-..+...|..|.
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333444444443
No 94
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.74 E-value=49 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
+..++-++.|-.+|..|..+|..|+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34567778888888888888877754
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.42 E-value=52 Score=33.60 Aligned_cols=22 Identities=9% Similarity=0.295 Sum_probs=14.4
Q ss_pred hhhhhcccchHHHHHHHHHHHH
Q 021778 65 EVDSIRSTSNEQCLHYQKLLME 86 (307)
Q Consensus 65 ElasiRs~kd~q~~~~QkLLmE 86 (307)
.|+.||..=++|+.+.|||=.+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777888887644
No 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.24 E-value=1.2e+02 Score=26.69 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.5
Q ss_pred ccchHHH
Q 021778 71 STSNEQC 77 (307)
Q Consensus 71 s~kd~q~ 77 (307)
..-+..+
T Consensus 146 ~~~~~~~ 152 (256)
T 3na7_A 146 SLVENEV 152 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 97
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.05 E-value=28 Score=27.62 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHY 80 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~ 80 (307)
+-+.+|.+++..|..++..|+.|++.+....|.=-.+|
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888999998888888877777664444433333
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.14 E-value=92 Score=22.32 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhh
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~El 66 (307)
.++++.|..+-+.|..+-..|+.++
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766665554
No 99
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.01 E-value=57 Score=25.20 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=13.9
Q ss_pred HHHHHhhhHHHHHHHHhhhhhh
Q 021778 45 IEFLRSENEKLCAQVNNLKSEV 66 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~El 66 (307)
|+.|+.|..+|+++|.++..+|
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 4466777777777766664444
No 100
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.93 E-value=1.3e+02 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=25.2
Q ss_pred HhhHHHHHHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 31 ELKFTTYVNA---ADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 31 E~kf~~~~sA---aeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
|.|.-..++. ..--|+.||.+|..|..++.++++.-+.+
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445444443 34468888888888888887765554443
No 101
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.92 E-value=42 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhh
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVD 67 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~Ela 67 (307)
..|+.|....+.|..+|..|++.|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777766666554
No 102
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.13 E-value=1.4e+02 Score=21.41 Aligned_cols=43 Identities=33% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQV 59 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv 59 (307)
++-|-.|..+|||-. |.-|+.. +-.+..|.+||+|..+|...|
T Consensus 5 naylrkkiarlkkdn------lqlerde------qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDN------LQLERDE------QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh------hhhhhhH------hhHHHHHHHHHHHHHHHHHHH
Confidence 344667778888743 3333322 345678888888887765543
No 103
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.58 E-value=1.1e+02 Score=25.62 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQEGTA 110 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E~~~ 110 (307)
-|+.|..+|..++..++-.+|.....-|.+.. ..|.+|+.+ |..||.+|+..+.....
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i---~qf~~E~~~---l~k~I~~lk~~q~~~ls 64 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKY---AELEKEKAT---LEAEIARLREVHSQKLS 64 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHH---HHHHHHHHH---HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 36778888888888888888877655554442 356777765 48999999998886663
No 104
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=31.17 E-value=1.1e+02 Score=26.23 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKL 104 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~L 104 (307)
|+--|.-|..+.++|-+.+..-+.....|....|+-+.+..- =..++-.|+-||-+|++|
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~----~~~~~~~~~~~~~~~~~~ 155 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE----LLSKNYHLENEVARLKKL 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHHhhcC
Confidence 444455566666666555433322333333333332222222 245777788888888764
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.56 E-value=67 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
++.|..|..+.++..+.+.+|++|+.-
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 106
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.35 E-value=61 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhcc
Q 021778 45 IEFLRSENEKLCAQVNNLKSEVDSIRS 71 (307)
Q Consensus 45 ie~Lr~EN~~L~~qv~~Lr~ElasiRs 71 (307)
|.+|-++-+.|..+|..|.+++..+|+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888876
No 107
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=29.71 E-value=26 Score=27.81 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHhhhhhhhhhc
Q 021778 50 SENEKLCAQVNNLKSEVDSIR 70 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~ElasiR 70 (307)
.-|+.|..|+.+|++||+++|
T Consensus 26 eKsk~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 26 EKNERVQKHLKALTSELANAR 46 (90)
T ss_dssp HHCHHHHHHHHHHHHHHHTTB
T ss_pred HHhHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999997
No 108
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=29.55 E-value=29 Score=31.18 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
|....-..++.+-.+.+.+.++++.|
T Consensus 135 FRE~~~~~~~e~~~~~e~~~~~i~ql 160 (250)
T 2ve7_C 135 FREACRETYMEFLWQYKSSADKMQQL 160 (250)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444333
No 109
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.47 E-value=79 Score=25.90 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhhhhhhcc
Q 021778 54 KLCAQVNNLKSEVDSIRS 71 (307)
Q Consensus 54 ~L~~qv~~Lr~ElasiRs 71 (307)
.|..+|+.|..||+.-|.
T Consensus 44 ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555444444443
No 110
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.45 E-value=1.1e+02 Score=24.54 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 53 EKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 53 ~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
..|..++-+|+.|+.+| ...|++|++=|| +||=.-|.+||++|.+-+.
T Consensus 26 ~~lk~E~~~lk~E~~st--SaQDeFAKWaKL----~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 26 LAKVKERHELKEFNNSI--SAQDNYAKWTKN----NRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp HHHHHHHHHHHHHHTTS--CTTTCHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554 345788888776 5666667788888877665
No 111
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=29.40 E-value=1.8e+02 Score=23.38 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 75 EQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 75 ~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.|+.=|..-|.-|-..++.+.+|.+.|+..+.
T Consensus 47 ~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 47 AQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56777888888888888888888888876554
No 112
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.02 E-value=2.9e+02 Score=24.11 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=14.2
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhccc
Q 021778 43 KYIEFLRSENEKLCAQVNNLKSEVDSIRST 72 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr~ElasiRs~ 72 (307)
.-|..+..+-+.+.+.+...+..+.+++..
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~ 89 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSEIKSE 89 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 333344444444444455555555555533
No 113
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=28.20 E-value=32 Score=23.63 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhHHHHH
Q 021778 42 DKYIEFLRSENEKLCA 57 (307)
Q Consensus 42 eelie~Lr~EN~~L~~ 57 (307)
.+-|.+||.||++|.+
T Consensus 20 deeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 20 DNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHh
Confidence 5679999999999865
No 114
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.10 E-value=77 Score=32.41 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=11.5
Q ss_pred hHHHHHHHH-hhhhhhhhhcccchHHH
Q 021778 52 NEKLCAQVN-NLKSEVDSIRSTSNEQC 77 (307)
Q Consensus 52 N~~L~~qv~-~Lr~ElasiRs~kd~q~ 77 (307)
|+.-.-||. +||..++-|+..-+.|+
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444 44444444444444444
No 115
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=27.39 E-value=1.6e+02 Score=29.71 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhc-ccchHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIR-STSNEQCLHYQKLLMEENQKNKALSEEVET 100 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiR-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~k 100 (307)
+-.+|...-+-|.+|.+.|.+.-+-+|... ++-=+++-++|+-|-.-.||++-|+.||.|
T Consensus 315 ~nklikdfl~snkelv~k~~nfnkavaeakntgny~~vkkaqkdlekslrkrehlekev~k 375 (569)
T 4dvz_A 315 ANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEK 375 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788889999888888887775 666789999999999999999999999986
No 116
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.18 E-value=90 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q 021778 37 YVNAADKYIEFLRSENEKLCAQV 59 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv 59 (307)
-+.+-++-|..|+.+|+.|++.+
T Consensus 54 ~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
No 117
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.89 E-value=2.3e+02 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDSI 69 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Elasi 69 (307)
.++++.+.-+.+...|+.++..+|.||..+
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554433
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.78 E-value=90 Score=23.84 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=6.6
Q ss_pred HHHhhhHHHHHHHHh
Q 021778 47 FLRSENEKLCAQVNN 61 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~ 61 (307)
.|+.+|+.|..++..
T Consensus 70 ~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 70 LLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 119
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.36 E-value=89 Score=20.99 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
..|+=+++|-.+|..|..+|..|++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456677777777777777766643
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.32 E-value=53 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~L 62 (307)
+++++.|+-|+.|+++|++.|..|
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999997655
No 121
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.17 E-value=1.2e+02 Score=21.59 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhh---hhhhhhcccchHHHHHHHHHHHHH
Q 021778 43 KYIEFLRSENEKLCAQVNNLK---SEVDSIRSTSNEQCLHYQKLLMEE 87 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~Lr---~ElasiRs~kd~q~~~~QkLLmEE 87 (307)
..|.+|..+..+++......- .+|-.|...-|-+.+-|++||--|
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgE 54 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGE 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 344455555544444433222 223445577789999999998543
No 122
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.11 E-value=2.5e+02 Score=22.43 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHH
Q 021778 7 KLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLME 86 (307)
Q Consensus 7 KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmE 86 (307)
++=+++.+|+.+ |...+..-++=|.+...+..-..++...|..|.+.|. ...+....|..-+..-+.++.+.+..|=+
T Consensus 17 ~~~eel~~lke~-l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~-e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 17 SMKEEFTRLKEA-LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA-DAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555432 2222334444456666666666666677777755443 33555556666667777777777777777
Q ss_pred HHhhhhhhH-------HHHHHHHHHHH
Q 021778 87 ENQKNKALS-------EEVETLQKLLQ 106 (307)
Q Consensus 87 E~~Knk~L~-------eEV~kLq~Ll~ 106 (307)
+...|..|. .+|..|++-++
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554 45555555444
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.05 E-value=3e+02 Score=25.32 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 021778 90 KNKALSEEVETLQKLLQ 106 (307)
Q Consensus 90 Knk~L~eEV~kLq~Ll~ 106 (307)
|-++|+.||-+|-.-++
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666654444
No 124
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.03 E-value=48 Score=30.05 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhhhcccchH
Q 021778 46 EFLRSENEKLCAQVNNLKSEVDSIRSTSNE 75 (307)
Q Consensus 46 e~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~ 75 (307)
+..+.|++.+.+++.+-|..+|.+|-.-|.
T Consensus 188 ~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 188 SRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666666666666666666644333
No 125
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=25.86 E-value=1.6e+02 Score=30.78 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhc-ccchHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKSEVDSIR-STSNEQCLHYQKLLMEENQKNKALSEEVET 100 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ElasiR-s~kd~q~~~~QkLLmEE~~Knk~L~eEV~k 100 (307)
|-.+|...-+-|.+|.+.|.+..+-+|... ++-=+++-++|+-|-.-.||++-|+.||.|
T Consensus 575 ~nklikdfl~snkelvgk~~nfnkavaeakntgnydevkkaqkdlekslrkrehlekev~k 635 (876)
T 4dvy_P 575 ANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEK 635 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788889999888888888775 666789999999999999999999999986
No 126
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.50 E-value=94 Score=21.01 Aligned_cols=25 Identities=8% Similarity=0.059 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
..++=+++|-.+|..|..+|..|++
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3456667777777777777766643
No 127
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.47 E-value=51 Score=23.50 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 40 AADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 40 Aaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
.-+++|+.|..+-+.|..+-..|+.++..
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777777777777666666544433
No 128
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=25.43 E-value=1.9e+02 Score=26.84 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=46.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 021778 30 QELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 30 QE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
.-..|++.+.....-|...+..-+.+...|.+.+..|..=...-..-...++..|-.+.-.-..|..||+.|+.-.+
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 34556667666666666666666666666666665554322222333445555555555555567777777777666
No 129
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.22 E-value=59 Score=23.68 Aligned_cols=18 Identities=44% Similarity=0.551 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 021778 89 QKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 89 ~Knk~L~eEV~kLq~Ll~ 106 (307)
..|..|..||..|+.++.
T Consensus 44 ~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 44 SKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667778888877765
No 130
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=24.83 E-value=54 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 021778 91 NKALSEEVETLQKLLQ 106 (307)
Q Consensus 91 nk~L~eEV~kLq~Ll~ 106 (307)
.++|.+|+.||+++--
T Consensus 37 ~kel~~el~kL~~~YG 52 (77)
T 2cly_C 37 QQDLDRELFKLKQMYG 52 (77)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHC
Confidence 3578999999999876
No 131
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.80 E-value=1.9e+02 Score=23.17 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL 84 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL 84 (307)
+-+.--|+.|..|.+.|..+-..|...|+.+...-+.++..+|..+
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i 86 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555666666555
No 132
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.36 E-value=1.4e+02 Score=23.17 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHhc
Q 021778 50 SENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQ---KLLQEG 108 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq---~Ll~E~ 108 (307)
+.++.|+..+..||+|| ..||.+....+-.+-=-++..+-|+-||.-|- +||+++
T Consensus 11 ~~~~~~~~~l~~Lr~eL----~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~r 68 (75)
T 3a7o_A 11 SHDDALLNTLAILQKEL----KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQK 68 (75)
T ss_dssp -CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHH
Confidence 34556666666666665 45777777766666555566667777876652 455543
No 133
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.96 E-value=4.6e+02 Score=24.75 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhh
Q 021778 5 YKKLYDKYDKLK 16 (307)
Q Consensus 5 y~KLydKYt~LK 16 (307)
|..||+.|++++
T Consensus 142 ~~~~~~~~~~~~ 153 (373)
T 3hhm_B 142 YDRLYEEYTRTS 153 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhccch
Confidence 778999999765
No 134
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=23.81 E-value=27 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCCchhHHHHHHHHHhcCccccccCCCceEEEEEeecC--CceeEEEe
Q 021778 209 DSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQST--GYSFSLTW 255 (307)
Q Consensus 209 es~~~~~~fq~L~e~llgMKlS~~~~~e~~cisa~H~sS--GysFsLTw 255 (307)
-+|++.|++.+++|.+|||+... +++.|.-+-++. ||+|++.|
T Consensus 730 ~tGsa~w~~~~lve~~LGlr~~~----~~L~i~P~LP~~w~~~~~~~~~ 774 (822)
T 3rrs_A 730 LTGTAAWNFVTVSQYLLGVRPEY----DGLVVDPQIGPDVPSFTVTRVA 774 (822)
T ss_dssp SSTHHHHHHHHHHHTTSCEEECS----SEEEECCCCCTTCCEEEEEEEE
T ss_pred hhhhHHHHHHHHHHhEEeEEEEC----CEEEEeCCCCCcCCcEEEEEEE
Confidence 35677999999999999999853 556654444443 55555433
No 135
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.70 E-value=1.3e+02 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 021778 37 YVNAADKYIEFLRSENEKLCA 57 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~ 57 (307)
++...+.-+..|.+||+-|..
T Consensus 4 lvaqlenevaslenenetlkk 24 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHH
Confidence 333444444555555555443
No 136
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=23.63 E-value=56 Score=27.02 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHH
Q 021778 47 FLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKL 83 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkL 83 (307)
.--+||+.++.| +.+|+.|.| +--..+.+|||.
T Consensus 66 ~kv~en~~~L~Q---IQ~ei~s~r-d~hkR~~E~QkE 98 (115)
T 1ezj_A 66 RKVDENKQLLKQ---IQESVESFR-DIYKRFSEYQKE 98 (115)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhhhhHHHHHH---HHHHHHHHH-HHHHHHHHhHHH
Confidence 334679999999 677888888 445567777764
No 137
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.01 E-value=1.2e+02 Score=25.35 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhccc
Q 021778 42 DKYIEFLRSENEKLCAQVNNLKSEVDSIRST 72 (307)
Q Consensus 42 eelie~Lr~EN~~L~~qv~~Lr~ElasiRs~ 72 (307)
-..|+.|++|+..|..++.+.--|+..+|..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3458888999999888876664454444433
No 138
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.62 E-value=27 Score=35.94 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCCCchhHHHHHHHHHhcCccccccCCCceEEEEEeecC--CceeEEEe
Q 021778 209 DSGPANCLFQALIEYLLGMKLSPYHESEGRCVSALHQST--GYSFSLTW 255 (307)
Q Consensus 209 es~~~~~~fq~L~e~llgMKlS~~~~~e~~cisa~H~sS--GysFsLTw 255 (307)
-+|++.|++.+++|.+|||+... +++.|.-+-++. ||+|++.+
T Consensus 717 ~tGsa~w~~~~~ve~~lGl~~~~----~~L~i~P~LP~~w~~~~~~~~~ 761 (811)
T 3qde_A 717 LTGTAAWNFVAISQWILGVKPDY----DGLKIDPCIPKAWDGYKVTRYF 761 (811)
T ss_dssp CSTHHHHHHHHHHHTTSCEEEET----TEEEECCBCCTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhceeEEEC----CEEEEeCcCCcccCcEEEEEEE
Confidence 35677999999999999999852 466665555544 55555443
No 139
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.92 E-value=2.5e+02 Score=25.71 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhccc
Q 021778 35 TTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRST 72 (307)
Q Consensus 35 ~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~ 72 (307)
.++.+++++.......|.+.|.++...|+.|++.++..
T Consensus 170 ~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 170 AELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555668888888888888888888443
No 140
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.86 E-value=79 Score=20.70 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=16.7
Q ss_pred HHHHHHHhhhHHHHHHHHhh
Q 021778 43 KYIEFLRSENEKLCAQVNNL 62 (307)
Q Consensus 43 elie~Lr~EN~~L~~qv~~L 62 (307)
.+...|..||.+|.++|.+|
T Consensus 6 allasleaenkqlkakveel 25 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999887
No 141
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=21.81 E-value=3.9e+02 Score=23.11 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH
Q 021778 5 YKKLYDKYDKLKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL 84 (307)
Q Consensus 5 y~KLydKYt~LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL 84 (307)
|.+.+.||.+|+.|+-.|-..|.+- |.++..--..=+.+-++|++|.-.|...... +-..-=+-+...|.-|
T Consensus 141 yd~~~~~~~kl~~k~~kd~~kl~ka-e~el~~a~~~ye~lN~~L~~eLP~l~~~~~~-------~~~~~~~~~i~~q~~f 212 (237)
T 4avm_A 141 YDSARHHLEAVQNAKKKDEAKTAKA-EEEFNKAQTVFEDLNQELLEELPILYNSRIG-------CYVTIFQNISNLRDVF 212 (237)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6677788888888776552222221 1112222222233333444444444332110 1122235677889999
Q ss_pred HHHHhhh
Q 021778 85 MEENQKN 91 (307)
Q Consensus 85 mEE~~Kn 91 (307)
+.|+.+.
T Consensus 213 ~~~~~~~ 219 (237)
T 4avm_A 213 YREMSKL 219 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.73 E-value=2.6e+02 Score=21.08 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHH
Q 021778 91 NKALSEEVETLQKLLQ 106 (307)
Q Consensus 91 nk~L~eEV~kLq~Ll~ 106 (307)
-..+..++..|..-+.
T Consensus 87 i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 87 KSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444554444443
No 143
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=21.34 E-value=2.2e+02 Score=22.10 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhhhhcCcchhhhHH---HHhhHHH----HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchH
Q 021778 3 SLYKKLYDKYDKLKKKKFSELDNLNKE---QELKFTT----YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNE 75 (307)
Q Consensus 3 ~Ly~KLydKYt~LKkrKlsd~d~lnke---QE~kf~~----~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~ 75 (307)
.+|.+|+..|-.+|. .++.+.++.-+ +-.+|.. +..+....|.+|. +.+.|...+..|...=+...++ .+
T Consensus 28 ~~~~rlF~~~P~~k~-~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld-~~~~l~~~l~~L~~~H~~~gV~-p~ 104 (147)
T 1mba_A 28 DFLVALFEKFPDSAN-FFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAA-NAGKMSAMLSQFAKEHVGFGVG-SA 104 (147)
T ss_dssp HHHHHHHHHCGGGGG-GCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCC-HH
T ss_pred HHHHHHHHhCchHHH-hhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHhhcCCCC-HH
Confidence 478899999988874 56555444322 2234444 7778888888884 3467777777776554544454 34
Q ss_pred HHHHHHHHHHHHH
Q 021778 76 QCLHYQKLLMEEN 88 (307)
Q Consensus 76 q~~~~QkLLmEE~ 88 (307)
.+.-...-|++=.
T Consensus 105 ~f~~~~~~ll~~l 117 (147)
T 1mba_A 105 QFENVRSMFPGFV 117 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4544444454433
No 144
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.25 E-value=1.2e+02 Score=22.69 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDS 68 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~Elas 68 (307)
|+...+.-|..|..+|+.|......|+.++..
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554445444433
No 145
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.99 E-value=1.6e+02 Score=31.44 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=7.5
Q ss_pred HHHhhhHHHHHHHHhhhhh
Q 021778 47 FLRSENEKLCAQVNNLKSE 65 (307)
Q Consensus 47 ~Lr~EN~~L~~qv~~Lr~E 65 (307)
.|..+.++|.+++.+|..+
T Consensus 917 ~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333
No 146
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.94 E-value=2.3e+02 Score=24.19 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHH---HHHHhhhhhhHHHHHHHHHHHH
Q 021778 37 YVNAADKYIEFLRSENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLL---MEENQKNKALSEEVETLQKLLQ 106 (307)
Q Consensus 37 ~~sAaeelie~Lr~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLL---mEE~~Knk~L~eEV~kLq~Ll~ 106 (307)
+...++++.+.|+.+-+.|+.++.-...|| |.--...+.+||..| .+|.++. +.+.++.|+..+.
T Consensus 93 l~~~~e~lr~~l~kdlEelr~kL~P~~eEL---~~~l~~~~Eelr~~L~Py~eelr~k--l~~~~eeLr~~l~ 160 (191)
T 1nfn_A 93 LSKELQAAQARLGADMEDVCGRLVQYRGEV---QAMLGQSTEELRVRLASHLRKLRKR--LLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHhH
Confidence 445566666666667777776644443333 333344455666655 5555543 5677777777775
No 147
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.64 E-value=1.3e+02 Score=20.26 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh
Q 021778 41 ADKYIEFLRSENEKLCAQVNNLKS 64 (307)
Q Consensus 41 aeelie~Lr~EN~~L~~qv~~Lr~ 64 (307)
.|+=+++|-.+|..|..+|..|++
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 456667777777777777766643
No 148
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.57 E-value=2.9e+02 Score=23.23 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q 021778 39 NAADKYIEFLRSENEKLCAQ 58 (307)
Q Consensus 39 sAaeelie~Lr~EN~~L~~q 58 (307)
..++.+-+.|+.+-+.++.+
T Consensus 95 ~~~e~Lr~~L~~d~EelR~~ 114 (165)
T 1gs9_A 95 KELQAAQARLGADMEDVRGR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 149
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.44 E-value=1.8e+02 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021778 71 STSNEQCLHYQKLLMEENQKNKALSEEVETLQ 102 (307)
Q Consensus 71 s~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq 102 (307)
..+.+.|.+..+.+..|+.+- .+||.+|+
T Consensus 67 ~arNe~L~~~Lk~ar~El~~L---keElerL~ 95 (251)
T 3m9b_A 67 AARNSKLMETLKEARQQLLAL---REEVDRLG 95 (251)
T ss_dssp TTTHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 455555666555555555443 56666654
No 150
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.38 E-value=1.8e+02 Score=26.36 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHhhhhhh
Q 021778 50 SENEKLCAQVNNLKSEV 66 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~El 66 (307)
.||+.|..+|..|..|+
T Consensus 115 eEN~~Lh~~ie~l~eEi 131 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEI 131 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666655443333
No 151
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.33 E-value=1.6e+02 Score=23.14 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHhhhhhh
Q 021778 50 SENEKLCAQVNNLKSEV 66 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~El 66 (307)
.||++|..+|..++.|+
T Consensus 38 ~EN~~Lh~~ie~~~eEi 54 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEI 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666655443333
No 152
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=20.22 E-value=3.4e+02 Score=22.41 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHHHH-hhhhhcCcchhhhHHHHhhHHHHHHHHHHHHHHHHhhh
Q 021778 6 KKLYDKYDK-LKKKKFSELDNLNKEQELKFTTYVNAADKYIEFLRSEN 52 (307)
Q Consensus 6 ~KLydKYt~-LKkrKlsd~d~lnkeQE~kf~~~~sAaeelie~Lr~EN 52 (307)
+-|++||-+ |+.+| +.|..|.=.+|..=+..+.++++.+.++.
T Consensus 36 Kel~~kyP~WLe~nk----~~l~~Ed~~RY~kQ~~lv~~I~~~fE~~~ 79 (126)
T 2wl8_A 36 KEITEKYPEWLQSHR----ESLPPEQFEKYQEQHSVMCKICEQFEAET 79 (126)
T ss_dssp HHHHTTHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhHHHHhCc----ccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 458889988 77665 34566777777777778888888777754
No 153
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.17 E-value=2.2e+02 Score=22.13 Aligned_cols=43 Identities=28% Similarity=0.450 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhhhhhhhhhcccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 021778 50 SENEKLCAQVNNLKSEVDSIRSTSNEQCLHYQKLLMEENQKNKALSEEVETLQKLLQE 107 (307)
Q Consensus 50 ~EN~~L~~qv~~Lr~ElasiRs~kd~q~~~~QkLLmEE~~Knk~L~eEV~kLq~Ll~E 107 (307)
.||.+|-..|..+..|++ .|-+|++.=+++-.++.-|-..+++
T Consensus 34 ~EN~~Lh~~ie~~~eEi~---------------~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIA---------------RLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------HHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887655433332 3455666666677777777666653
Done!