BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021779
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1
Length = 351
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 32/312 (10%)
Query: 19 KGLAVVLVGGHILVQLLPASV------------SVLALIPARTIP---FAWNLLTAGYIE 63
+ L +L ++V+ L A+V LA+ P P + W L T G +E
Sbjct: 10 QHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLME 69
Query: 64 QTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVN----FLTSLCIFITAVALYYITR 119
Q V V +S ++ G+LLEP+WG+ E L F +VN L + +T +A + +
Sbjct: 70 QHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVY 129
Query: 120 LETYLYMPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
L T + + G G L G LV +KQ + D L + +++ +P L+L L + + T
Sbjct: 130 LFT---VRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLL 186
Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
+ L + FG W+YLR+ Q+ ++ GD +D FAF++FFPE ++PV+ +A++ H
Sbjct: 187 QSPALASYGFGLLSSWVYLRFYQR--HSRGRGDMADHFAFATFFPEILQPVVGLLANLVH 244
Query: 239 RMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQ 294
+L ++T D + SLPG+DP +A RRR+ +AL ERL K Q
Sbjct: 245 SLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQ 301
Query: 295 SVEESKKDAAEN 306
S+ S D E
Sbjct: 302 SIWPSMDDDEEE 313
>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1
Length = 350
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 12/272 (4%)
Query: 42 LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFI 98
LA+ P P + W L T G +EQ V V +S ++ G+LLEP+WG+ E L F +
Sbjct: 45 LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104
Query: 99 VNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKI 156
VN L + + Y + YL+ + + G G L G LV +KQ + D L + ++
Sbjct: 105 VNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQV 164
Query: 157 KAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDF 216
+ +P L+L L + + T + L + FG W+YLR+ Q+ ++ GD +D F
Sbjct: 165 RVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQR--HSRGRGDMADHF 222
Query: 217 AFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASR 272
AF++FFPE ++PV+ +A++ H +L ++T D + SLPG+DP +A R
Sbjct: 223 AFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAER 282
Query: 273 RRERGARALEERLA-TEKLAAAQSVEESKKDA 303
RR+ +AL ERL E +A S+++ +++A
Sbjct: 283 RRQLALKALNERLKRVEDQSAWPSMDDDEEEA 314
>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1
Length = 351
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 140/274 (51%), Gaps = 14/274 (5%)
Query: 42 LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFI 98
LA+ P P + W L T G +EQ V V +S ++ G+LLEP+WG+ E L F +
Sbjct: 45 LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104
Query: 99 VNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKI 156
VN L + Y + YL+ + + G G L G LV +KQ + D L + ++
Sbjct: 105 VNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQV 164
Query: 157 KAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDF 216
+ +P L+L L + + T + L + FG W+YLR+ Q+ ++ GD +D F
Sbjct: 165 RVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVYLRFYQR--HSRGRGDMADHF 222
Query: 217 AFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASR 272
AF++FFPE ++PV+ +A++ H +L ++T D + SLPG+DP +A R
Sbjct: 223 AFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAER 282
Query: 273 RRERGARALEERLATEKLAAAQSVEESKKDAAEN 306
RR+ +AL ERL K QSV S D E
Sbjct: 283 RRQLALKALNERL---KRVEDQSVWPSMDDDEEE 313
>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1
SV=1
Length = 342
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 30/276 (10%)
Query: 41 VLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS-KEFLKFIFIV 99
+L ++P++ + +L+ + +I+ VVV+ L L+ G +E W S KE KFI ++
Sbjct: 67 LLQMVPSQIWRYPTSLVLSNFIDTKAWKVVVNLLNLIIGGSFIERNWNSSKEMFKFIIVL 126
Query: 100 NFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLK---- 155
LT++ I + + + + + + L +PL G +L GF + +Q++P+ + LK
Sbjct: 127 GSLTNVLIIMLTLLVSFFSN-KVRLDIPLDGNYTILIGFPIIYRQLLPETTIIHLKTPQF 185
Query: 156 ----IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK-------- 203
+ K LP ++ A L ++ + W YLR+ QK
Sbjct: 186 LAKNFRFKLLPIFVMFTMTVTQIIWFHHFAQLFSIWVTFFASWSYLRFFQKLAPLNCPSL 245
Query: 204 PETK-------LSGDPSDDFAFSSFFPEFIRPVIDPIAS-IFHRMLCGRRTETSGDDHGY 255
P T L GD SD F FFP+ I+P++ PI + I++ ++ + D
Sbjct: 246 PTTNSQGGQEILVGDASDTFQLIYFFPDLIKPILRPIFNFIYNVVVVKFKVIKPFHDIDI 305
Query: 256 TLGG--ASLPGSDPIEA--SRRRERGARALEERLAT 287
+G A G+ I RRR+ + LEER+
Sbjct: 306 DIGNTIAESRGAKKIMTVEERRRQLALQVLEERMVN 341
>sp|O42826|PDH1_SCHPO Protein pdh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pdh1 PE=4 SV=1
Length = 226
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%)
Query: 44 LIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLT 103
L+P F W ++T +++ V ++ S L L G +E WG KE+L F + +
Sbjct: 49 LVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGVEIERSWGHKEYLLFCQFLTVIP 108
Query: 104 SLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQI 145
++ + I Y IT L + + AG L Q+
Sbjct: 109 NIAVLIPCFIAYKITDSHYLLVAIIQSTTAIQAGILTAWYQL 150
>sp|P47480|TIG_MYCGE Trigger factor OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tig PE=1 SV=1
Length = 444
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 190 TYMGWIYLRYLQKKPET---------KLSGDPSDDFAFSSFFPEFIRPV--IDPIASIFH 238
T+ +++ LQ KP T KL P D+ F SF PE + + S FH
Sbjct: 225 TFPSDYHVKELQSKPVTFEVVLKAIKKLEFTPMDETNFKSFLPEQFQSFTSLKAFKSYFH 284
Query: 239 RMLCGRRTETSGDDHG-----YTLGGASLP----GSDPIEASR-RRERGARALEERLATE 288
+++ ++ ET ++ + L LP +EA+R + + ++A + ++ E
Sbjct: 285 KLMENKKQETILQENNQKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYKIPFE 344
Query: 289 KLAAAQSV------EESKKDAAENV 307
KL +A ++ + + K+A ENV
Sbjct: 345 KLLSASNITLTELQDRNIKEAKENV 369
>sp|Q9BBT6|NDHJ_LOTJA NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lotus
japonicus GN=ndhJ PE=3 SV=1
Length = 158
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 67 HGVVVSTLGLLFMG----KLLEPVWGSKEFLKFIFIVNFLTSLCIFITA-----VALYYI 117
HG+V +LG + G ++ W S + +++ N+L S C + + ++Y++
Sbjct: 12 HGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHL 71
Query: 118 TRLETYLYMP 127
TR+E +Y P
Sbjct: 72 TRIECGIYQP 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,579,821
Number of Sequences: 539616
Number of extensions: 4495650
Number of successful extensions: 15281
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15248
Number of HSP's gapped (non-prelim): 38
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)