Query 021779
Match_columns 307
No_of_seqs 254 out of 1362
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 4.3E-23 1.5E-27 177.9 19.0 172 13-203 2-181 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 8.9E-23 3E-27 178.1 14.8 174 13-203 7-186 (196)
3 1g70_B RSG-1.2 peptide; peptid 92.8 0.055 1.9E-06 29.5 1.8 18 264-281 6-23 (26)
4 2kxh_B Peptide of FAR upstream 54.6 6.4 0.00022 22.9 1.6 12 268-279 11-23 (31)
5 3c01_A Surface presentation of 41.7 21 0.00072 23.1 2.8 22 266-287 16-37 (48)
6 4ffl_A PYLC; amino acid, biosy 36.6 15 0.00053 33.1 2.2 25 263-287 337-361 (363)
7 3bzy_A ESCU; auto cleavage pro 34.2 31 0.0011 22.9 2.8 22 266-287 22-43 (54)
8 3ha4_A MIX1; TPR-like, helix-t 26.4 22 0.00076 27.4 1.1 27 258-286 11-42 (154)
9 2xse_A Thymine dioxygenase JBP 17.1 86 0.003 25.0 2.8 22 260-284 144-165 (170)
10 3b1s_A Flagellar biosynthetic 21.1 30 0.001 22.7 0.0 22 266-287 20-41 (52)
11 3b0z_A Flagellar biosynthetic 20.8 31 0.0011 22.7 0.0 22 266-287 20-41 (52)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.91 E-value=4.3e-23 Score=177.88 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=131.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCcc-ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhCh
Q 021779 13 GFTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPART-IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS 89 (307)
Q Consensus 13 ~~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~~-~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs 89 (307)
+.+|+|+.++++|+++|++....+. ...++++.|... .+|+||++|++|+|.++.|+++||+.++.+|+.+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4578999999999999999876543 456788888643 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH---HHccCCeEEEeccccchHHHHHH
Q 021779 90 KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIK---QIVPDQELYLLKIKAKWLPSLML 166 (307)
Q Consensus 90 ~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~---ql~P~~~v~l~~ir~k~lp~~~l 166 (307)
++|+.+|+++++.+++.+.+. .++ +..|+||+++|++++.. ...|+.++. ++.+.... +
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~-------~~~------~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~--~ 143 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKF-------SGP------WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIF--A 143 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HCS------CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------cCC------CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHH--H
Confidence 999999999999999976431 111 26899999999998753 467776542 22222211 1
Q ss_pred HHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779 167 LLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYLQKK 203 (307)
Q Consensus 167 ~~~~~~~~~~--~~~~~~~~~~l~G~~~gw~Ylrf~q~~ 203 (307)
.+.++.++.. .+++++.+ |++|+++|+++...++|+
T Consensus 144 ~~~~~~~~~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~ 181 (181)
T 2xov_A 144 LIWIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVDSLN 181 (181)
T ss_dssp HHHHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHHhcC
Confidence 2222333332 24667776 999999999998887763
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.89 E-value=8.9e-23 Score=178.09 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=128.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCcc-ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhCh
Q 021779 13 GFTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPART-IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS 89 (307)
Q Consensus 13 ~~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~~-~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs 89 (307)
+.+++|+.++++|+++|++....+. ..+++++.|... .+|+||++|++|+|.++.|+++||+.++.+|+.+|+.||+
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~ 86 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS 86 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 5578999999999999999876542 456788888754 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HccCCeEEEeccccchHHHHHH
Q 021779 90 KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLKIKAKWLPSLML 166 (307)
Q Consensus 90 ~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~q---l~P~~~v~l~~ir~k~lp~~~l 166 (307)
++|+.+|+++++.+++.+.+. .++ ...|+||+++|++++... ..|+. .. ++.+...+..+.+
T Consensus 87 ~~~l~~yl~~~~~~~l~~~~~-------~~~------~~vGaSGai~gl~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 151 (196)
T 2nr9_A 87 VKLLMLYVVASAITGYVQNYV-------SGP------AFFGLSGVVYAVLGYVFIRDKLNHHL-FD-LPEGFFTMLLVGI 151 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HCS------CCCCSHHHHHHHHHHHHHHHHSSTTS-CC-CCCSSTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------cCC------CeeeHHHHHHHHHHHHHHHHHhcchh-hc-chHHHHHHHHHHH
Confidence 999999999999999976431 221 268999999999986533 33443 11 2222222222222
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779 167 LLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK 203 (307)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~ 203 (307)
.+.+. .....+++++.+ |++|+++|+++...+.++
T Consensus 152 ~~~~~-~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 152 ALGFI-SPLFGVEMGNAA-HISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp THHHH-SCSSCCTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhccCCCccHHH-HHHHHHHHHHHHHHHHhc
Confidence 22221 111123667776 999999999988777664
No 3
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=92.76 E-value=0.055 Score=29.55 Aligned_cols=18 Identities=56% Similarity=0.733 Sum_probs=13.6
Q ss_pred CCCchhhhHHHHHHHHHH
Q 021779 264 GSDPIEASRRRERGARAL 281 (307)
Q Consensus 264 g~~~~eaeRRR~~AlkaL 281 (307)
|+.|.-|||||.+|..|.
T Consensus 6 gsrpsgaerrrrraaaa~ 23 (26)
T 1g70_B 6 GSRPSGAERRRRRAAAAX 23 (26)
T ss_pred CCCCchHHHHHHHHHhhh
Confidence 456777899998887654
No 4
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=54.58 E-value=6.4 Score=22.90 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=9.6
Q ss_pred hhh-hHHHHHHHH
Q 021779 268 IEA-SRRRERGAR 279 (307)
Q Consensus 268 ~ea-eRRR~~Alk 279 (307)
+|| +|-||+|.|
T Consensus 11 adA~~RaRQIaAK 23 (31)
T 2kxh_B 11 KDALQRARQIAAK 23 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 444 899999987
No 5
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=41.74 E-value=21 Score=23.11 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred CchhhhHHHHHHHHHHHHHHhh
Q 021779 266 DPIEASRRRERGARALEERLAT 287 (307)
Q Consensus 266 ~~~eaeRRR~~AlkaL~eRl~~ 287 (307)
||+--.|||+++-+...+|+.+
T Consensus 16 dP~iK~~~R~~~~e~a~~~m~~ 37 (48)
T 3c01_A 16 NPEVKSKRREVHMEILSEQVKS 37 (48)
T ss_pred CHHHHHHHHHHHHHHHHhHHHh
Confidence 7888899999999999999863
No 6
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=36.63 E-value=15 Score=33.13 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhh
Q 021779 263 PGSDPIEASRRRERGARALEERLAT 287 (307)
Q Consensus 263 pg~~~~eaeRRR~~AlkaL~eRl~~ 287 (307)
-|.|++||.+|.+.||+.+++|+.+
T Consensus 337 ~G~~~~eA~~k~~~al~~i~~~~g~ 361 (363)
T 4ffl_A 337 WGKDREETGAKRCKGLSVLKERFGA 361 (363)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCHHHHHHHHHHHHHHHHHHhcc
Confidence 3679999999999999999999873
No 7
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=34.23 E-value=31 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred CchhhhHHHHHHHHHHHHHHhh
Q 021779 266 DPIEASRRRERGARALEERLAT 287 (307)
Q Consensus 266 ~~~eaeRRR~~AlkaL~eRl~~ 287 (307)
||+--.|||+++-+...+|+.+
T Consensus 22 dP~iK~r~R~~~re~a~~~m~~ 43 (54)
T 3bzy_A 22 NPEIKGERRRLHSEIQSGSLAN 43 (54)
T ss_pred CHHHHHHHHHHHHHHHHhHHHh
Confidence 7888899999999999999863
No 8
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=26.40 E-value=22 Score=27.43 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=14.4
Q ss_pred CCCCCCCCCchhhhHHHHHH-----HHHHHHHHh
Q 021779 258 GGASLPGSDPIEASRRRERG-----ARALEERLA 286 (307)
Q Consensus 258 ~~~~lpg~~~~eaeRRR~~A-----lkaL~eRl~ 286 (307)
+.+.+| |.-||||||.-- --.|.||.-
T Consensus 11 gp~~lp--deleae~rrrndprrppwpllhqr~v 42 (154)
T 3ha4_A 11 GPIELP--EELEAQRQRHNDPRRPPWPLLHQRVV 42 (154)
T ss_dssp --------CCHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred CCccCc--HHHHHHHHhhCCCCCCCchhhhhhhh
Confidence 346777 788999998643 245667753
No 9
>2xse_A Thymine dioxygenase JBP1; oxidoreductase, DNA-binding; HET: MSE; 1.90A {Leishmania tarentolae}
Probab=17.11 E-value=86 Score=24.97 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=14.5
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHH
Q 021779 260 ASLPGSDPIEASRRRERGARALEER 284 (307)
Q Consensus 260 ~~lpg~~~~eaeRRR~~AlkaL~eR 284 (307)
+.+| |+|-|||+++-++.=|.|
T Consensus 144 KDMP---pEEqeRR~~Rk~~IEeAR 165 (170)
T 2xse_A 144 KDMP---PEEKKRRMERKQRIEEAR 165 (170)
T ss_dssp -CCC---HHHHHHHHHHHHHHHHHH
T ss_pred ccCC---HHHHHHHHHHHHHHHHHH
Confidence 5566 899999998765543333
No 10
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=21.05 E-value=30 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.9
Q ss_pred CchhhhHHHHHHHHHHHHHHhh
Q 021779 266 DPIEASRRRERGARALEERLAT 287 (307)
Q Consensus 266 ~~~eaeRRR~~AlkaL~eRl~~ 287 (307)
||+--.|||+++-+...+|+.+
T Consensus 20 dP~iK~~~R~~~~e~a~~~m~~ 41 (52)
T 3b1s_A 20 HPEVKSRIKARMRELAKSRMMA 41 (52)
Confidence 7887899999999999988863
No 11
>3b0z_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=20.80 E-value=31 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred CchhhhHHHHHHHHHHHHHHhh
Q 021779 266 DPIEASRRRERGARALEERLAT 287 (307)
Q Consensus 266 ~~~eaeRRR~~AlkaL~eRl~~ 287 (307)
||+--.|||+++-+...+|+.+
T Consensus 20 dP~iK~~~R~~~re~a~~~m~~ 41 (52)
T 3b0z_A 20 DPHVKGKIRQMQRAAAQRRMME 41 (52)
Confidence 7887899999999999988863
Done!