BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021780
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 54/329 (16%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C+ MQA + PPD+ CKDKFLIQ V T+DEDIT+ MF+K GK++EE KLRV
Sbjct: 64 CEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVT 123
Query: 74 LMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV----------- 118
L+ P SP L P N KQ + E S+ KDR S E + P G+ V
Sbjct: 124 LVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGHDEL 182
Query: 119 --AANAEVFETAKFA-----------DELTETKD------------LQWLENAKERDESR 153
A NA+ +T K A ++L TKD + + K+ D+ R
Sbjct: 183 KAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDADDGR 242
Query: 154 AAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASELKP 208
A K TTN+ +++A D+ Q F + +D IS D D ++
Sbjct: 243 AIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQNVR- 296
Query: 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268
+ ELKL KD EE+KLK++ ++S+L++A+ TI KLME R ++++ + L+HEL LR
Sbjct: 297 --GLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRT 354
Query: 269 KSNLRRVQVGFPLLFVCMVALIGLVVGYL 297
K ++ V GFPLL+VC+VA I V+G+
Sbjct: 355 KKIVKEVHNGFPLLYVCVVAFIAYVIGHF 383
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 9 SKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEK 68
S E+L TMQAQ+ AP DLQCKDKFL+Q +V G + +D+T +MF+K++G VEE
Sbjct: 63 SSEVL----VTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEET 118
Query: 69 KLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIP--PGDGVAANAEVFE 126
KLRV+ ++PP+ P + R G ++ SSP S+ + S P D V A E
Sbjct: 119 KLRVVYVAPPRPPSPV-REGS-EEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSE 176
Query: 127 TAKFADELTETKD 139
+LTE K+
Sbjct: 177 ARALVTKLTEEKN 189
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C+ TMQAQ+ AP D+QCKDKFL+QG++ G + +++T +MF+K++G VEE KLRV
Sbjct: 81 CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140
Query: 74 LMSPPQSPVLLPRNGELKQDSSPETSL 100
++PP+ P + E + SSP S+
Sbjct: 141 YVAPPRPPSPVHEGSE--EGSSPRASV 165
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C TMQAQ+ AP D+QCKDKFL+Q +VV GT+ +++ ++MF K++G+ +E+ KLRV+
Sbjct: 66 CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVV 125
Query: 74 LMSPPQSPVLLPRNGELKQDSSPETSL 100
+ P P +P E + +SP SL
Sbjct: 126 YI-PANPPSPVPEGSE--EGNSPMASL 149
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C+ MQA + AP D QCKDK L Q VV GT D+++TS+MF+K++G VEE ++I
Sbjct: 65 CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKII 124
Query: 74 LMSP--PQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVA 119
++P PQSPV + G L+ SSP S+ D+ + + P G+
Sbjct: 125 YVAPPQPQSPV---QEG-LEDGSSPSASVS-DKGNASEVFVGPSVGIV 167
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C+ MQA + AP D+QC+DK L Q VV T+ +D+TS+MF+K++G EE +L+V+
Sbjct: 235 CEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVM 294
Query: 74 LMSPPQSPVLLPRNGELKQDSSPETSLQKD 103
++PPQ P P ++ SSP S+ +
Sbjct: 295 YVTPPQPPS--PVQEGTEEGSSPRASVSDN 322
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73
C + T+QAQR PPD+QCKDKFL+Q +VP T +++ D F KDSGK + E KL+V
Sbjct: 68 CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127
Query: 74 LMSP 77
++P
Sbjct: 128 YITP 131
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 199 PAEDASELKPAKDILELKLAKDFEELKLKLNVM----------------DSQLREAEHTI 242
P D EL +D K E KLK++ + D Q E TI
Sbjct: 99 PHTDVDEL--PQDTFTKDSGKTLTECKLKVSYITPSTTQRSSESGATNGDGQSSETISTI 156
Query: 243 RKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 297
++L E R A ++ L+HELE +RR+ N R G L MV LIGL++G++
Sbjct: 157 QRLKEERDAAVKQTQQLQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFI 211
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 14 CKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 72
CK TMQAQ+ P D+Q +KF+IQ ++ G + +++T +MF+K+SG VEE KLRV
Sbjct: 65 CKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRV 123
>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsF PE=3 SV=1
Length = 210
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 139 DLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSR 198
D + ++ AK+ E + AKD + T +++EAKD + + +KD E+ A + ++ +
Sbjct: 121 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVK 180
Query: 199 PAEDASELKPAKDILELKLAKDFEELK 225
A+D E+K AKD E+K AKD +E+K
Sbjct: 181 EAKDTKEVKEAKDTKEVKEAKDTKEVK 207
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 138 KDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQS 197
K+ N + E + AKD + T +++EAKD + + +KD E+ A + ++
Sbjct: 111 KEASTTNNENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEV 170
Query: 198 RPAEDASELKPAKDILELKLAKDFEELK 225
+ A+D E+K AKD E+K AKD +E+K
Sbjct: 171 KEAKDTKEVKEAKDTKEVKEAKDTKEVK 198
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 128 AKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDE 187
AK E+ E KD + ++ AK+ E + AKD + T +++EAKD + + +KD E
Sbjct: 128 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 187
Query: 188 LISAAEDEQSRPAEDASELKPAKDILELK 216
+ + A+D E+K AKD E+K
Sbjct: 188 V---------KEAKDTKEVKEAKDTKEVK 207
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 125/324 (38%), Gaps = 48/324 (14%)
Query: 17 QFTMQAQRVAP-PDLQCKDKFLIQGIVVPFGTSDEDITSDMF-----AKDSGKYVEEKKL 70
Q +QA + P PD +C+DKFLIQ + + G +D + + G+ + ++K+
Sbjct: 63 QVLLQAMKEEPAPDFKCRDKFLIQSMAI--GDADTSNVENYHEFWTEMEKQGRSIFDRKI 120
Query: 71 RVILMS--PPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETA 128
R + + PPQS + E S+P S++ L+ P GV+ + +
Sbjct: 121 RCVYSTKQPPQS---ADKQVENTSTSNPPVSVEGSENLASSVGGPTAVGVSLDEAQNDFN 177
Query: 129 KFADELTETKDLQWLENA-KERDESRAAKDVQMFGT--TNVTNKLREAKD-VQTFE--SS 182
D L+ + ++ + ES D + T T+ N KD + T E SS
Sbjct: 178 GAKDHLSNGVNTVVPDSTFRSTFESAQIPDASVVQTVVTDADNGAASVKDTIVTAESASS 237
Query: 183 KDIDELISAAED----EQSRPAE------DASELKPAKDILELKLAKDFEELKLKLNVMD 232
K D S +D E +P+E ++ + L+ EE K N D
Sbjct: 238 KGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFD 297
Query: 233 SQLREAEHTIRKLMEARKLATREK-----------------DMLKHELEVLRRKSNLRRV 275
S+L E+ + K+ E TRE + +K S +
Sbjct: 298 SKLPESTPAVEKVSENLGSETRESLQGAKPAAGAHSSDNALEQIKPSYSADPSSSTGASL 357
Query: 276 --QVGFPLLFVCMVALIGLVVGYL 297
G P V ++ LI ++GYL
Sbjct: 358 TESPGIPPNIVIILCLIFFLIGYL 381
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 87 NGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENA 146
+G + S ET L+K + + ++ ++ K D+ E +D ++L
Sbjct: 847 SGTINTFVSHETELEKYKLIESIK---------------KSEKSLDKQAEERDKKYLLYF 891
Query: 147 KERDESRAAKDVQMFGTTNVTNKLREAKDVQT--FESSKDIDEL--ISAAEDEQSRPAE 201
+ER+E+R D Q N+ ++L +A + T FE+SK+++E I A EQSR +
Sbjct: 892 EEREEARPKAD-QYGSLINIVSRLLDASNRSTSSFETSKNMEEYERIDAMAKEQSRICQ 949
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 201 EDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 257
E+A E + K +LE K E++L LN +QL +TIR+L + L RE++
Sbjct: 515 EEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKRERE 571
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,274,889
Number of Sequences: 539616
Number of extensions: 4650863
Number of successful extensions: 15571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 536
Number of HSP's that attempted gapping in prelim test: 14917
Number of HSP's gapped (non-prelim): 1113
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)