Query 021780
Match_columns 307
No_of_seqs 167 out of 294
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 05:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.7 1E-17 2.3E-22 153.3 5.8 76 2-78 48-124 (242)
2 KOG0439 VAMP-associated protei 99.5 1.7E-14 3.7E-19 127.8 7.9 81 1-83 55-137 (218)
3 PF00635 Motile_Sperm: MSP (Ma 98.6 6.3E-08 1.4E-12 76.2 5.4 57 2-59 49-106 (109)
4 PRK10884 SH3 domain-containing 96.9 0.0051 1.1E-07 56.4 9.0 71 228-298 120-191 (206)
5 PF14197 Cep57_CLD_2: Centroso 90.1 1.6 3.4E-05 34.0 7.0 49 221-269 7-62 (69)
6 PRK10884 SH3 domain-containing 87.9 2.3 5E-05 39.2 7.6 69 226-298 125-195 (206)
7 PRK04406 hypothetical protein; 86.3 4.3 9.3E-05 32.1 7.2 50 222-271 7-56 (75)
8 PF04102 SlyX: SlyX; InterPro 85.4 4.3 9.3E-05 31.2 6.7 48 225-272 3-50 (69)
9 PRK04325 hypothetical protein; 84.3 4.8 0.0001 31.5 6.7 50 222-271 5-54 (74)
10 PRK10132 hypothetical protein; 83.7 16 0.00036 30.7 10.0 23 278-300 84-106 (108)
11 PRK10404 hypothetical protein; 82.6 9.3 0.0002 31.7 8.1 23 278-300 78-100 (101)
12 PF05957 DUF883: Bacterial pro 81.7 16 0.00035 28.9 8.9 22 279-300 72-93 (94)
13 PRK02119 hypothetical protein; 79.9 10 0.00022 29.7 7.1 48 224-271 7-54 (73)
14 PRK00846 hypothetical protein; 79.5 9.5 0.00021 30.6 6.8 48 223-270 10-57 (77)
15 PRK02793 phi X174 lysis protei 79.3 9.8 0.00021 29.7 6.7 48 224-271 6-53 (72)
16 PRK00736 hypothetical protein; 78.5 10 0.00023 29.2 6.6 46 226-271 5-50 (68)
17 PRK00295 hypothetical protein; 78.4 11 0.00023 29.2 6.6 46 226-271 5-50 (68)
18 PF06156 DUF972: Protein of un 75.1 14 0.0003 31.0 7.0 51 218-268 7-57 (107)
19 COG3883 Uncharacterized protei 73.1 13 0.00028 36.0 7.1 69 203-271 29-97 (265)
20 PF07798 DUF1640: Protein of u 71.4 25 0.00054 31.2 8.1 40 257-297 134-173 (177)
21 PF06156 DUF972: Protein of un 68.7 39 0.00084 28.4 8.2 50 222-271 4-53 (107)
22 PF05546 She9_MDM33: She9 / Md 67.7 19 0.00042 33.8 6.8 53 219-271 32-85 (207)
23 PF10498 IFT57: Intra-flagella 67.5 21 0.00046 35.6 7.5 67 211-282 265-331 (359)
24 PF10779 XhlA: Haemolysin XhlA 67.3 54 0.0012 25.1 8.8 67 224-299 4-71 (71)
25 PF05064 Nsp1_C: Nsp1-like C-t 67.2 17 0.00036 30.5 5.8 65 205-269 22-86 (116)
26 PRK13169 DNA replication intia 67.1 26 0.00057 29.7 6.9 52 217-268 6-57 (110)
27 PF11166 DUF2951: Protein of u 66.3 36 0.00079 28.7 7.4 22 278-299 68-89 (98)
28 KOG3156 Uncharacterized membra 64.9 15 0.00033 34.7 5.6 90 205-298 109-217 (220)
29 PF14874 PapD-like: Flagellar- 62.8 8.1 0.00017 30.1 2.9 23 2-24 53-75 (102)
30 PF06005 DUF904: Protein of un 62.7 33 0.00071 27.0 6.2 41 229-269 7-54 (72)
31 PF03962 Mnd1: Mnd1 family; I 62.2 17 0.00036 33.0 5.2 56 215-271 72-127 (188)
32 PF10473 CENP-F_leu_zip: Leuci 60.8 58 0.0013 28.7 8.1 53 217-269 29-81 (140)
33 PF06005 DUF904: Protein of un 60.4 54 0.0012 25.8 7.1 30 240-269 32-61 (72)
34 PF13544 N_methyl_2: Type IV p 60.3 8.6 0.00019 25.5 2.3 21 273-293 10-30 (31)
35 PF13870 DUF4201: Domain of un 60.2 62 0.0013 28.4 8.3 67 212-282 77-143 (177)
36 PRK13169 DNA replication intia 59.8 47 0.001 28.2 7.1 50 222-271 4-53 (110)
37 PF11120 DUF2636: Protein of u 58.8 7.4 0.00016 30.2 2.0 19 283-301 9-27 (62)
38 PF12777 MT: Microtubule-bindi 57.8 36 0.00078 33.1 7.0 53 217-269 226-278 (344)
39 PF10482 CtIP_N: Tumour-suppre 57.0 31 0.00067 30.0 5.6 39 225-263 81-119 (120)
40 COG2991 Uncharacterized protei 55.3 9.7 0.00021 30.7 2.2 22 279-300 4-26 (77)
41 PF12325 TMF_TATA_bd: TATA ele 53.8 1E+02 0.0022 26.4 8.3 50 220-269 31-83 (120)
42 PF06548 Kinesin-related: Kine 53.7 44 0.00095 35.0 7.1 33 238-270 429-471 (488)
43 KOG0995 Centromere-associated 53.1 52 0.0011 35.2 7.6 63 215-281 269-331 (581)
44 PF13870 DUF4201: Domain of un 52.3 39 0.00085 29.6 5.8 48 217-264 89-136 (177)
45 PF02687 FtsX: FtsX-like perme 51.4 26 0.00057 26.8 4.1 40 258-297 25-64 (121)
46 PF11027 DUF2615: Protein of u 50.1 18 0.0004 30.5 3.1 27 276-302 50-76 (103)
47 PF09738 DUF2051: Double stran 49.8 38 0.00082 33.2 5.7 44 221-264 79-122 (302)
48 PF15188 CCDC-167: Coiled-coil 49.4 64 0.0014 26.4 6.1 27 246-273 42-68 (85)
49 PF11544 Spc42p: Spindle pole 49.4 94 0.002 25.2 6.9 50 220-269 6-55 (76)
50 COG4317 Uncharacterized protei 49.4 13 0.00028 30.8 2.1 16 285-300 32-47 (93)
51 PF08826 DMPK_coil: DMPK coile 49.2 91 0.002 24.0 6.6 38 224-268 23-60 (61)
52 COG4575 ElaB Uncharacterized c 47.1 1.3E+02 0.0029 25.6 7.8 22 278-299 81-102 (104)
53 PF08912 Rho_Binding: Rho Bind 46.7 63 0.0014 25.7 5.5 47 217-263 1-51 (69)
54 smart00340 HALZ homeobox assoc 46.4 37 0.00081 24.9 3.8 19 251-269 16-34 (44)
55 PF11559 ADIP: Afadin- and alp 46.1 1.4E+02 0.0031 25.3 8.1 55 214-268 68-122 (151)
56 PRK13673 hypothetical protein; 44.8 30 0.00066 29.8 3.7 36 261-299 77-112 (118)
57 PF13851 GAS: Growth-arrest sp 44.8 94 0.002 28.4 7.2 47 219-265 27-80 (201)
58 PF04977 DivIC: Septum formati 44.3 64 0.0014 23.9 5.1 26 241-266 25-50 (80)
59 PF06667 PspB: Phage shock pro 43.8 27 0.0006 27.8 3.1 21 282-302 12-32 (75)
60 PRK15422 septal ring assembly 43.8 97 0.0021 25.3 6.2 41 224-264 23-63 (79)
61 COG4467 Regulator of replicati 43.3 1.1E+02 0.0023 26.6 6.7 43 221-263 10-52 (114)
62 PRK04778 septation ring format 43.2 1.9E+02 0.0042 30.1 10.0 88 214-302 378-465 (569)
63 PF00769 ERM: Ezrin/radixin/mo 41.7 67 0.0015 30.2 5.9 41 229-269 78-118 (246)
64 PF06305 DUF1049: Protein of u 41.7 26 0.00057 25.7 2.6 21 279-299 18-39 (68)
65 PLN03188 kinesin-12 family pro 41.2 75 0.0016 37.1 7.1 33 238-270 1199-1241(1320)
66 PF08606 Prp19: Prp19/Pso4-lik 41.0 77 0.0017 25.2 5.2 37 224-260 27-70 (70)
67 PRK03992 proteasome-activating 40.6 80 0.0017 31.2 6.5 46 223-268 5-50 (389)
68 PF11621 Sbi-IV: C3 binding do 40.5 43 0.00094 26.3 3.6 37 232-268 11-60 (69)
69 PF02183 HALZ: Homeobox associ 40.1 1.4E+02 0.003 21.5 6.0 29 241-269 13-41 (45)
70 PF09726 Macoilin: Transmembra 39.4 77 0.0017 34.4 6.6 56 214-269 420-475 (697)
71 PF11221 Med21: Subunit 21 of 39.0 2E+02 0.0043 24.8 7.9 56 214-269 78-133 (144)
72 KOG0972 Huntingtin interacting 38.5 1.2E+02 0.0027 30.5 7.3 36 243-283 304-339 (384)
73 PF10205 KLRAQ: Predicted coil 38.3 1.8E+02 0.0039 24.7 7.2 43 224-266 24-73 (102)
74 TIGR03007 pepcterm_ChnLen poly 37.1 4.4E+02 0.0095 26.4 11.1 15 282-296 415-429 (498)
75 COG5407 SEC63 Preprotein trans 36.9 22 0.00048 37.5 2.1 22 279-300 193-214 (610)
76 PF10031 DUF2273: Small integr 36.7 33 0.00071 25.4 2.4 22 278-299 28-50 (51)
77 TIGR03185 DNA_S_dndD DNA sulfu 36.4 1.7E+02 0.0036 31.0 8.4 49 220-268 224-276 (650)
78 PF02960 K1: K1 glycoprotein; 35.3 32 0.00068 30.0 2.4 21 276-297 67-87 (130)
79 PF06305 DUF1049: Protein of u 35.2 52 0.0011 24.1 3.3 27 241-267 42-68 (68)
80 TIGR03592 yidC_oxa1_cterm memb 34.8 2.2E+02 0.0047 25.2 7.7 31 238-271 34-64 (181)
81 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.7 2.5E+02 0.0055 23.7 7.8 32 239-270 83-114 (132)
82 PF03962 Mnd1: Mnd1 family; I 34.6 87 0.0019 28.4 5.3 54 217-271 67-120 (188)
83 KOG4005 Transcription factor X 34.5 1.3E+02 0.0028 29.5 6.5 35 235-269 92-140 (292)
84 PF04888 SseC: Secretion syste 34.5 2.3E+02 0.005 26.8 8.3 58 236-297 18-76 (306)
85 KOG3119 Basic region leucine z 34.3 2E+02 0.0042 27.5 7.8 48 224-271 206-253 (269)
86 PRK15422 septal ring assembly 33.8 1.4E+02 0.0029 24.4 5.6 36 228-263 6-41 (79)
87 PF06160 EzrA: Septation ring 33.5 3.5E+02 0.0075 28.4 10.1 90 212-302 372-461 (560)
88 PF04728 LPP: Lipoprotein leuc 33.2 2.2E+02 0.0048 21.8 6.8 39 214-252 5-43 (56)
89 PF04420 CHD5: CHD5-like prote 33.2 72 0.0016 28.1 4.4 21 253-273 72-92 (161)
90 PF08317 Spc7: Spc7 kinetochor 33.1 2.4E+02 0.0052 27.3 8.3 50 220-269 217-266 (325)
91 PRK01026 tetrahydromethanopter 32.7 56 0.0012 26.5 3.3 25 218-242 14-38 (77)
92 PF08112 ATP-synt_E_2: ATP syn 32.2 1.6E+02 0.0036 22.5 5.5 36 231-269 16-52 (56)
93 PTZ00454 26S protease regulato 32.1 1.4E+02 0.0029 30.1 6.6 41 228-268 24-64 (398)
94 PF10151 DUF2359: Uncharacteri 31.9 1.7E+02 0.0036 30.6 7.4 83 210-303 198-287 (469)
95 TIGR02532 IV_pilin_GFxxxE prep 31.8 67 0.0015 20.5 2.9 22 276-297 1-23 (26)
96 KOG0554 Asparaginyl-tRNA synth 31.3 22 0.00048 36.7 1.0 44 244-289 378-424 (446)
97 TIGR02212 lolCE lipoprotein re 31.2 43 0.00094 31.8 2.9 14 260-273 296-309 (411)
98 PF13815 Dzip-like_N: Iguana/D 30.9 1.5E+02 0.0033 24.6 5.8 35 235-269 82-116 (118)
99 TIGR01149 mtrG N5-methyltetrah 30.1 67 0.0015 25.6 3.3 24 218-241 11-34 (70)
100 KOG0980 Actin-binding protein 30.1 1.3E+02 0.0029 34.0 6.6 144 35-268 249-400 (980)
101 PF13851 GAS: Growth-arrest sp 29.7 3.1E+02 0.0068 25.1 8.0 53 219-271 79-131 (201)
102 PHA02562 46 endonuclease subun 29.6 1.8E+02 0.004 29.2 7.1 16 251-266 355-370 (562)
103 PF03672 UPF0154: Uncharacteri 28.9 47 0.001 25.9 2.2 17 283-299 2-18 (64)
104 KOG0977 Nuclear envelope prote 28.7 1.6E+02 0.0035 31.4 6.7 49 220-268 142-190 (546)
105 smart00338 BRLZ basic region l 28.6 2E+02 0.0043 21.2 5.5 28 240-267 33-60 (65)
106 PF07798 DUF1640: Protein of u 28.5 2.6E+02 0.0057 24.7 7.2 51 239-293 123-173 (177)
107 PRK01844 hypothetical protein; 28.2 45 0.00097 26.7 2.0 20 279-298 5-24 (72)
108 PF12325 TMF_TATA_bd: TATA ele 28.2 2.7E+02 0.0059 23.9 6.9 47 221-267 18-64 (120)
109 PF00038 Filament: Intermediat 28.2 3.8E+02 0.0083 25.0 8.6 53 216-268 79-138 (312)
110 KOG3202 SNARE protein TLG1/Syn 28.1 5.4E+02 0.012 24.6 10.6 22 277-298 213-234 (235)
111 PF02060 ISK_Channel: Slow vol 27.9 55 0.0012 28.8 2.7 21 277-297 40-66 (129)
112 PF05008 V-SNARE: Vesicle tran 27.8 1.9E+02 0.0042 21.7 5.5 45 223-267 22-67 (79)
113 PF15035 Rootletin: Ciliary ro 27.6 2.2E+02 0.0047 25.9 6.6 34 231-264 86-119 (182)
114 PF10473 CENP-F_leu_zip: Leuci 27.5 3.8E+02 0.0083 23.7 7.9 54 215-268 41-94 (140)
115 PF12301 CD99L2: CD99 antigen 27.0 44 0.00094 30.4 2.0 26 280-305 119-144 (169)
116 PF10186 Atg14: UV radiation r 26.8 2.8E+02 0.0061 25.2 7.3 8 291-298 198-205 (302)
117 PRK00523 hypothetical protein; 26.7 52 0.0011 26.3 2.2 21 278-298 5-25 (72)
118 PF01102 Glycophorin_A: Glycop 26.6 48 0.001 28.6 2.1 21 280-300 68-90 (122)
119 TIGR03017 EpsF chain length de 26.5 6.2E+02 0.013 24.8 10.8 82 213-298 305-414 (444)
120 PF05667 DUF812: Protein of un 26.3 3.5E+02 0.0077 29.0 8.8 50 219-268 328-384 (594)
121 PF07297 DPM2: Dolichol phosph 26.3 68 0.0015 25.9 2.8 25 279-303 50-75 (78)
122 KOG0978 E3 ubiquitin ligase in 26.1 2.3E+02 0.005 31.2 7.4 54 217-270 564-617 (698)
123 COG3074 Uncharacterized protei 25.9 2.4E+02 0.0051 22.9 5.7 40 230-269 8-54 (79)
124 PF07106 TBPIP: Tat binding pr 25.9 3.3E+02 0.0072 23.6 7.2 53 216-268 83-137 (169)
125 PRK10814 outer membrane-specif 25.8 59 0.0013 31.3 2.8 14 260-273 294-307 (399)
126 KOG4657 Uncharacterized conser 25.5 3.6E+02 0.0078 26.2 7.8 53 241-299 80-132 (246)
127 PF14283 DUF4366: Domain of un 25.5 19 0.00041 33.7 -0.6 24 275-299 158-181 (218)
128 COG5547 Small integral membran 25.4 57 0.0012 25.4 2.1 21 280-300 31-51 (62)
129 COG3086 RseC Positive regulato 25.2 62 0.0014 29.2 2.6 24 276-299 98-121 (150)
130 PRK09413 IS2 repressor TnpA; R 25.2 1.8E+02 0.004 24.0 5.3 32 238-269 76-107 (121)
131 PF03904 DUF334: Domain of unk 25.0 3.1E+02 0.0068 26.3 7.3 43 238-285 118-160 (230)
132 PRK11146 outer membrane-specif 25.0 60 0.0013 31.4 2.7 14 260-273 297-310 (412)
133 PF14646 MYCBPAP: MYCBP-associ 25.0 61 0.0013 32.4 2.8 34 3-40 292-325 (426)
134 PF09304 Cortex-I_coil: Cortex 24.9 4.5E+02 0.0097 22.6 8.6 62 208-269 12-73 (107)
135 PF03961 DUF342: Protein of un 24.9 2.9E+02 0.0064 27.8 7.6 28 241-268 376-403 (451)
136 TIGR02213 lolE_release lipopro 24.5 62 0.0014 31.4 2.7 38 260-298 296-338 (411)
137 PF03302 VSP: Giardia variant- 24.5 44 0.00095 33.5 1.7 24 277-300 370-394 (397)
138 PF08702 Fib_alpha: Fibrinogen 24.4 3.1E+02 0.0068 24.0 6.8 43 211-253 28-70 (146)
139 COG3763 Uncharacterized protei 24.3 77 0.0017 25.4 2.7 19 281-299 7-25 (71)
140 PF15456 Uds1: Up-regulated Du 24.3 4.6E+02 0.01 22.6 8.0 55 215-270 32-104 (124)
141 PHA03029 hypothetical protein; 24.2 40 0.00087 27.6 1.1 18 285-303 19-36 (92)
142 PF01618 MotA_ExbB: MotA/TolQ/ 24.2 1.8E+02 0.0039 24.4 5.1 16 283-298 64-79 (139)
143 TIGR02231 conserved hypothetic 24.1 2.1E+02 0.0046 29.2 6.5 48 221-268 126-173 (525)
144 KOG2077 JNK/SAPK-associated pr 23.9 2.7E+02 0.0058 30.6 7.3 67 205-271 315-381 (832)
145 TIGR02976 phageshock_pspB phag 23.6 96 0.0021 24.7 3.1 21 281-301 11-31 (75)
146 PRK02201 putative inner membra 23.6 3.2E+02 0.0069 27.6 7.5 37 237-273 164-203 (357)
147 TIGR02797 exbB tonB-system ene 23.6 1.2E+02 0.0025 27.8 4.1 20 278-297 118-142 (211)
148 PF07235 DUF1427: Protein of u 23.6 41 0.00089 28.0 1.1 15 285-299 31-45 (90)
149 TIGR02209 ftsL_broad cell divi 23.5 2.4E+02 0.0051 21.4 5.3 32 236-267 27-58 (85)
150 PF13815 Dzip-like_N: Iguana/D 23.0 2.7E+02 0.0059 23.1 5.9 36 227-262 81-116 (118)
151 PF00170 bZIP_1: bZIP transcri 23.0 3.1E+02 0.0068 20.1 5.9 33 236-268 29-61 (64)
152 PF15397 DUF4618: Domain of un 22.9 4.1E+02 0.0089 25.8 7.8 67 216-290 60-126 (258)
153 PF09991 DUF2232: Predicted me 22.9 78 0.0017 28.6 2.9 22 281-302 61-82 (290)
154 PF07334 IFP_35_N: Interferon- 22.8 1.4E+02 0.0029 24.2 3.8 29 241-269 1-29 (76)
155 PF13234 rRNA_proc-arch: rRNA- 22.7 64 0.0014 29.9 2.3 51 220-270 215-265 (268)
156 PF08614 ATG16: Autophagy prot 22.6 1.9E+02 0.0041 25.9 5.2 46 223-268 99-144 (194)
157 PF12709 Kinetocho_Slk19: Cent 22.6 2.7E+02 0.0058 23.0 5.6 31 239-269 48-78 (87)
158 PF09753 Use1: Membrane fusion 22.5 6.3E+02 0.014 23.4 9.2 14 256-269 208-221 (251)
159 PF08317 Spc7: Spc7 kinetochor 22.4 3.7E+02 0.0081 26.0 7.5 36 216-251 220-255 (325)
160 KOG1962 B-cell receptor-associ 22.4 2.9E+02 0.0062 26.3 6.5 47 218-264 164-210 (216)
161 KOG3970 Predicted E3 ubiquitin 22.3 1E+02 0.0022 30.1 3.5 22 282-303 254-276 (299)
162 TIGR02449 conserved hypothetic 22.2 3.7E+02 0.0081 21.0 6.1 41 229-269 3-43 (65)
163 KOG3313 Molecular chaperone Pr 22.2 1.4E+02 0.0031 27.8 4.4 39 230-271 121-159 (187)
164 COG1340 Uncharacterized archae 22.1 3.7E+02 0.0081 26.6 7.4 49 223-271 52-100 (294)
165 TIGR03493 cellullose_BcsF cell 22.0 66 0.0014 25.2 1.9 20 283-302 9-28 (62)
166 COG1730 GIM5 Predicted prefold 22.0 3.5E+02 0.0077 24.0 6.7 45 219-263 94-138 (145)
167 PF00672 HAMP: HAMP domain; I 22.0 88 0.0019 22.2 2.5 18 282-299 3-20 (70)
168 PF12732 YtxH: YtxH-like prote 21.7 1E+02 0.0022 23.5 2.9 21 282-302 3-23 (74)
169 KOG0963 Transcription factor/C 21.4 4.3E+02 0.0093 28.9 8.2 60 209-268 289-358 (629)
170 PF10883 DUF2681: Protein of u 21.3 45 0.00098 27.4 0.9 21 283-303 7-27 (87)
171 PF06612 DUF1146: Protein of u 21.2 83 0.0018 23.0 2.2 15 285-299 30-44 (48)
172 PF10211 Ax_dynein_light: Axon 21.2 5.6E+02 0.012 23.2 7.9 50 219-270 127-179 (189)
173 TIGR03510 XapX XapX domain. Th 21.1 90 0.0019 23.2 2.3 19 282-300 28-46 (49)
174 PF10205 KLRAQ: Predicted coil 21.1 5.2E+02 0.011 21.9 7.9 52 218-269 4-55 (102)
175 PF04576 Zein-binding: Zein-bi 21.0 3.2E+02 0.0069 22.9 5.8 30 223-252 21-50 (94)
176 PF07989 Microtub_assoc: Micro 20.9 2.7E+02 0.0059 21.9 5.2 50 214-269 9-58 (75)
177 PF15030 DUF4527: Protein of u 20.6 3.8E+02 0.0082 26.4 7.0 40 230-269 27-66 (277)
178 PF11772 EpuA: DNA-directed RN 20.4 61 0.0013 23.8 1.3 17 282-298 6-22 (47)
179 PF09738 DUF2051: Double stran 20.2 4.9E+02 0.011 25.7 7.8 48 221-268 114-161 (302)
180 PRK00888 ftsB cell division pr 20.2 2.8E+02 0.006 23.0 5.3 31 230-267 31-61 (105)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.70 E-value=1e-17 Score=153.35 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=70.5
Q ss_pred CCccceecCCCeEEEEEEecCCCCCC-CCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAP-PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 78 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaP-PDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~ 78 (307)
.||.|+|.|+++++|+|+||++++.| ||+||||||||||+..++..+-+|+ .|+|+..+++-|-++||||+|.--.
T Consensus 48 RPN~g~Iep~stv~VeVilq~l~eEpapdfKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse~~ 124 (242)
T COG5066 48 RPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRDKFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSEEE 124 (242)
T ss_pred cCCCceeccCCeeEEEEEeeccccCCCCCccccceeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeeccc
Confidence 59999999999999999999999999 9999999999999999998888888 7889888888899999999998443
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-14 Score=127.77 Aligned_cols=81 Identities=28% Similarity=0.465 Sum_probs=67.9
Q ss_pred CCCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhc--ccCCCcceeeeeEEEEeCCC
Q 021780 1 MLTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA--KDSGKYVEEKKLRVILMSPP 78 (307)
Q Consensus 1 ~~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~--Ke~g~~V~E~KLRVVyv~P~ 78 (307)
+-||.|+|.||++|+|.|++||++..|+|++|||||+||++.++.+. ..++ .+.|. +..++.+.+.|++|+|+.|+
T Consensus 55 VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~~~~-~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~ 132 (218)
T KOG0439|consen 55 VRPNGGVIDPGSTVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAPPPT-TRDV-VDLWKFQKETPKESFETKLRVVFVAPT 132 (218)
T ss_pred EcCCcceECCCCcEEEEEEeccCccCchhhcccceEEEEEEecCCcc-ccch-hhhccccccccccccceeeEEEeeCCC
Confidence 35999999999999999999999888999999999999999999872 2222 33443 33489999999999999998
Q ss_pred CCCCc
Q 021780 79 QSPVL 83 (307)
Q Consensus 79 ~pP~~ 83 (307)
.++..
T Consensus 133 ~~~~~ 137 (218)
T KOG0439|consen 133 ETDSV 137 (218)
T ss_pred CCccc
Confidence 87643
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=98.61 E-value=6.3e-08 Score=76.20 Aligned_cols=57 Identities=28% Similarity=0.360 Sum_probs=41.9
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCc-ccchhhhcc
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDE-DITSDMFAK 59 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~-DIt~dmf~K 59 (307)
.|+.|+|.||+++.|.|+++++...+.+.. +|||+||++.++++.... +....+|..
T Consensus 49 ~P~~G~i~p~~~~~i~I~~~~~~~~~~~~~-~dkf~I~~~~~~~~~~~~~~~~~~~~~~ 106 (109)
T PF00635_consen 49 KPSYGIIEPGESVEITITFQPFDFEPSNKK-KDKFLIQSIVVPDNATDPKKDFKQIWKN 106 (109)
T ss_dssp ESSEEEE-TTEEEEEEEEE-SSSTTTTSTS-SEEEEEEEEEE-TT-SSSHHHHHCCHHH
T ss_pred cCCCEEECCCCEEEEEEEEEecccCCCCCC-CCEEEEEEEEcCCCccchhhhHHHHHhc
Confidence 499999999999999999999987765544 999999999998875443 333445544
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.93 E-value=0.0051 Score=56.43 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=48.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCc-chhHHHHHHHHHHHHHHHh
Q 021780 228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGF-PLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GF-pllFV~~VaLlGi~lGyll 298 (307)
..+++.++.++...|..|.+|.....+|..++|+|++.|+.+......+.=+ -|++=..|+++|++||.++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3445666677778888899999999999999999988877653322111112 2334467788888888875
No 5
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.13 E-value=1.6 Score=34.00 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKL-------ATREKDMLKHELEVLRRK 269 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~-------aiqe~~kLqqEL~lLrr~ 269 (307)
+..|..+|..+..|++--...+..|+-||+. |.+++++|+.|++.||++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777788887778888889999965 556789999999999986
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.91 E-value=2.3 Score=39.20 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=35.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCCcchhHHHHHH-HHHHHHHHHh
Q 021780 226 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR-VQVGFPLLFVCMVA-LIGLVVGYLS 298 (307)
Q Consensus 226 ~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~-~~~GFpllFV~~Va-LlGi~lGyll 298 (307)
.++...+....+.+.--.+|++|-..+-.+++.|+.|++-+++....+- -.||. |+++| |||++|-||.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~----v~~~GlllGlilp~l~ 195 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG----VAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH----HHHHHHHHHHHhcccc
Confidence 3344444444444444455555555555555555555555554322110 12553 33333 3899999997
No 7
>PRK04406 hypothetical protein; Provisional
Probab=86.25 E-value=4.3 Score=32.05 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=43.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.++..++..||.++.--+.+|..|++.=-.--++.+.|+.+|..|+.+-.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999988888899999999999977543
No 8
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.39 E-value=4.3 Score=31.15 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=41.1
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021780 225 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 272 (307)
Q Consensus 225 k~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~ 272 (307)
..++..||.|+.-.+.+|..|.+.=-.--++.++|+.+|..|+.+-..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999987544
No 9
>PRK04325 hypothetical protein; Provisional
Probab=84.30 E-value=4.8 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=42.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+.+..++..||.|+.--+.+|..|.+.=-.--++.+.|+.+|..|+.+-.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678899999999999999999988888888999999999976543
No 10
>PRK10132 hypothetical protein; Provisional
Probab=83.70 E-value=16 Score=30.69 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred CcchhHHHHHHHHHHHHHHHhcC
Q 021780 278 GFPLLFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 278 GFpllFV~~VaLlGi~lGyll~~ 300 (307)
--||.-|.+.|.+|++||+|+.+
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999864
No 11
>PRK10404 hypothetical protein; Provisional
Probab=82.62 E-value=9.3 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhcC
Q 021780 278 GFPLLFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 278 GFpllFV~~VaLlGi~lGyll~~ 300 (307)
--|+--|-+.|.+|++||+|+.+
T Consensus 78 e~Pw~avGiaagvGlllG~Ll~R 100 (101)
T PRK10404 78 EKPWQGIGVGAAVGLVLGLLLAR 100 (101)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhc
Confidence 37888899999999999999863
No 12
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=81.74 E-value=16 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHHHHHhcC
Q 021780 279 FPLLFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 279 FpllFV~~VaLlGi~lGyll~~ 300 (307)
-|+.-|.+.+.+|++||+|+.+
T Consensus 72 ~P~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC
Confidence 6999999999999999999974
No 13
>PRK02119 hypothetical protein; Provisional
Probab=79.89 E-value=10 Score=29.66 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=41.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+..++..||.++.--+.+|..|++.=-.--++.+.|+.+|..|+.+-.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988888888999999999976543
No 14
>PRK00846 hypothetical protein; Provisional
Probab=79.54 E-value=9.5 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
++..++..||.++.-.+.+|..|++.=-..-++.++|+..|..|+.+-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999888899999999999888653
No 15
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.32 E-value=9.8 Score=29.66 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=41.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+..++..||.++.-.+.+|..|.+.=-.--++.+.|+.+|..|+.+-.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999988888889999999999976543
No 16
>PRK00736 hypothetical protein; Provisional
Probab=78.49 E-value=10 Score=29.21 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=39.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 226 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 226 ~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.++..||.|+.-.+.+|..|++.=-.--++.+.|+.+|..|+.+-.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999988888888999999999976543
No 17
>PRK00295 hypothetical protein; Provisional
Probab=78.44 E-value=11 Score=29.19 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 226 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 226 ~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.++..||.|+.-.+.+|..|++.=-.--++.+.|+.+|..|+.+-.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999888888888999999999976543
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.06 E-value=14 Score=31.02 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=34.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
..-+.++...+..+-.++.+-+..|..|.||...-.-||+.|+.-|..+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666667777777777777777777777777777766643
No 19
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.06 E-value=13 Score=35.99 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=57.8
Q ss_pred ccccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 203 ASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 203 ~s~~~~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+++....++..+.++.++.+++..++.-|+.+..+...-|..+.++-+..-++..+|++|++.++....
T Consensus 29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666778889999999999999999999999999999999999999999999999988775443
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.39 E-value=25 Score=31.15 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhccccccCCcchhHHHHHHHHHHHHHHH
Q 021780 257 DMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 297 (307)
Q Consensus 257 ~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~lGyl 297 (307)
.++..|+.-||.....-+. .=.-+++-+++|.+++++||+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~-~~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKW-DTLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544332211 123345666677888888886
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.65 E-value=39 Score=28.40 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=45.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.++=..+..++.++.+.-+-|..|+..-..-+.||..|+-|-+-||++-.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999998754
No 22
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=67.73 E-value=19 Score=33.76 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=46.9
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhc
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE-VLRRKSN 271 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~-lLrr~~~ 271 (307)
..++.||.....+|.++.+|...+...+.+-..|++++...|.|+- +|-||.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4678899999999999999999999999999999999999999986 6666543
No 23
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.49 E-value=21 Score=35.60 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=53.8
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 021780 211 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 282 (307)
Q Consensus 211 ~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpll 282 (307)
|.++.++...+...+.+|+..+.++.++..-++.++.+=+.-.++.++.++||+- ++++ -..|=||+
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~~--mtD~sPlv 331 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGSS--MTDGSPLV 331 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC--CCCCCHHH
Confidence 4456777778888899999999999999999999999999999999999999885 3332 24566654
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.33 E-value=54 Score=25.08 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=32.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhH-HHHHHHHHHHHHHHhc
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLF-VCMVALIGLVVGYLSH 299 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllF-V~~VaLlGi~lGyll~ 299 (307)
++.+++..+.++.+-+.-|.+|..-....-++..-+.+.|+-+.. +.+ +++ .++=|+++.++||++|
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~--n~k-------W~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS--NTK-------WIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 334555556666555555555532222222222456666666653 222 233 3344566666777664
No 25
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=67.15 E-value=17 Score=30.47 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=36.4
Q ss_pred ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 205 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+..|-=+..+..-++.|.+.-.+++..+..|-+...-|.+|..+-..+...-++|.|+|+.+...
T Consensus 22 eiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 22 EIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454455566677889999999999999999999999999999999999999999999999864
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.07 E-value=26 Score=29.71 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=40.6
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+..-+.+|...+..+-.++.+-+..|..|-||...-.-||+.||.-|+.+..
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556666777777888888888999999988888899999998887743
No 27
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=66.31 E-value=36 Score=28.67 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.0
Q ss_pred CcchhHHHHHHHHHHHHHHHhc
Q 021780 278 GFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 278 GFpllFV~~VaLlGi~lGyll~ 299 (307)
-+-=+=..+.||+|+++|-|+-
T Consensus 68 nir~~KmwilGlvgTi~gslii 89 (98)
T PF11166_consen 68 NIRDIKMWILGLVGTIFGSLII 89 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3554556678999999998764
No 28
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=64.87 E-value=15 Score=34.74 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=54.2
Q ss_pred ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH------------------HHHHHH-HHHHHHHHH
Q 021780 205 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------------------LATREK-DMLKHELEV 265 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~------------------~aiqe~-~kLqqEL~l 265 (307)
++.......+..+-...+.||+.+..++.++++- |+|-+-|-| ..+.|+ .|+-+|+.-
T Consensus 109 el~S~e~sEF~~lr~e~EklkndlEk~ks~lr~e---i~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~ 185 (220)
T KOG3156|consen 109 ELVSIERSEFANLRAENEKLKNDLEKLKSSLRHE---ISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTN 185 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHH
Confidence 3344445555556566666666655555555441 222221111 122222 688899999
Q ss_pred HHhhhccccccCCcchhHHHHHHHHHHHHHHHh
Q 021780 266 LRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 266 Lrr~~~~~~~~~GFpllFV~~VaLlGi~lGyll 298 (307)
||....+- .-.-.-++|-+++|...++|||+-
T Consensus 186 lk~qi~s~-K~qt~qw~~g~v~~~~Al~La~~r 217 (220)
T KOG3156|consen 186 LKTQIESV-KTQTIQWLIGVVTGTSALVLAYLR 217 (220)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876653 124578899999999999999973
No 29
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=62.81 E-value=8.1 Score=30.14 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.1
Q ss_pred CCccceecCCCeEEEEEEecCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQR 24 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqk 24 (307)
-|..|.|.||+++++.|++.|-+
T Consensus 53 ~~~~g~l~PG~~~~~~V~~~~~~ 75 (102)
T PF14874_consen 53 EPPSGFLAPGESVELEVTFSPTK 75 (102)
T ss_pred ECCCCEECCCCEEEEEEEEEeCC
Confidence 37899999999999999999643
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.69 E-value=33 Score=27.00 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=23.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q 021780 229 NVMDSQLREAEHTIRKLMEARK-------LATREKDMLKHELEVLRRK 269 (307)
Q Consensus 229 ~~~e~kl~Ea~~~I~kL~EEr~-------~aiqe~~kLqqEL~lLrr~ 269 (307)
..|+.|...|-.+|..|+.|-. ..-++|..|++|..-||..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665554443 4444466666666666643
No 31
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.24 E-value=17 Score=32.99 Aligned_cols=56 Identities=32% Similarity=0.434 Sum_probs=34.0
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 215 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 215 ~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
..+.+++++++.++..++.++.++.. =..=++||...+++.+.|++|+..|+.+-.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555421 222246777778888888888888776543
No 32
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.77 E-value=58 Score=28.73 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.0
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+-+|.+.....+-.+....+-+.+.|..|.++-...+++++.|..||+-||+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444555566777778888887778888888888777764
No 33
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.37 E-value=54 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 240 HTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 240 ~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.-=..|.+++..--++|++|++|-.-...+
T Consensus 32 e~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 32 EKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445577888888899999988776653
No 34
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=60.28 E-value=8.6 Score=25.50 Aligned_cols=21 Identities=33% Similarity=0.418 Sum_probs=8.5
Q ss_pred ccccCCcchhHHHHHHHHHHH
Q 021780 273 RRVQVGFPLLFVCMVALIGLV 293 (307)
Q Consensus 273 ~~~~~GFpllFV~~VaLlGi~ 293 (307)
++.|.||.|+=++++-.|+.+
T Consensus 10 ~~~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp --------HHHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHHHH
Confidence 336789999988666555544
No 35
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.22 E-value=62 Score=28.35 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=49.9
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 021780 212 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 282 (307)
Q Consensus 212 ~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpll 282 (307)
+.+.|+-+-...+...+..+...+.+....+.+++++-..+-.++++++....-||.++. ..+.|-+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~----~~~~P~l 143 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG----LLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcHH
Confidence 345566566666667777778888888888888998888888999999999888886532 3355655
No 36
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.82 E-value=47 Score=28.22 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.++=.++..++.++...-.-|..|+..-...+.||..|+-|-+-||++-.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999998765
No 37
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=58.84 E-value=7.4 Score=30.20 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 021780 283 FVCMVALIGLVVGYLSHPQ 301 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~~~ 301 (307)
.|++.|||++.+||++|..
T Consensus 9 ii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRW 27 (62)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4678899999999999854
No 38
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.82 E-value=36 Score=33.14 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=44.2
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.....++...+|...+.++.+...-|..|+.+...++++++.|+++++...++
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777888888888888999999999999999999999999876654
No 39
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=56.98 E-value=31 Score=30.00 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=31.6
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 225 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 225 k~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
|.+-.+.++.....-..|..|+-|+++--+||.+|+.|+
T Consensus 81 kK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 81 KKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344445666666667799999999999999999999997
No 40
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.27 E-value=9.7 Score=30.71 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=16.0
Q ss_pred cchhHHHHHH-HHHHHHHHHhcC
Q 021780 279 FPLLFVCMVA-LIGLVVGYLSHP 300 (307)
Q Consensus 279 FpllFV~~Va-LlGi~lGyll~~ 300 (307)
|=|.|++++. ++|+.+||++++
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 4566776554 568999999984
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.76 E-value=1e+02 Score=26.41 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=33.6
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEAR---KLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr---~~aiqe~~kLqqEL~lLrr~ 269 (307)
....++..+..++..-.+|..-|.+|+++. +....+...|++|+.-|..+
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666777777776665 56667777888888777754
No 42
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=53.69 E-value=44 Score=34.97 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhh
Q 021780 238 AEHTIRKLMEARK----------LATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 238 a~~~I~kL~EEr~----------~aiqe~~kLqqEL~lLrr~~ 270 (307)
|..++.+|+|.-. .+-|++.||.++|+.|+|+-
T Consensus 429 agEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 429 AGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777776432 45689999999999999863
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.14 E-value=52 Score=35.24 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcch
Q 021780 215 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPL 281 (307)
Q Consensus 215 ~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpl 281 (307)
..+.+|++-.+.-.++++.|...-...+.+|.+|-..-..|+.+||+|-+-|+++... +||+-
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~----Q~iS~ 331 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL----QGISG 331 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCH
Confidence 4466788877777888888888888888899999889999999999999999986532 36764
No 44
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.34 E-value=39 Score=29.58 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=23.6
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
+..+...++..+...+..+...+.-+.+++.+|+....++.+|+++..
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444445555555555555555555555555555555444443
No 45
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=51.43 E-value=26 Score=26.76 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhccccccCCcchhHHHHHHHHHHHHHHH
Q 021780 258 MLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 297 (307)
Q Consensus 258 kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~lGyl 297 (307)
+=++|+..+|.-|.+++.=...-+.-.++++++|+++|++
T Consensus 25 ~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~ 64 (121)
T PF02687_consen 25 ERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGIL 64 (121)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999888776322233344445566666666644
No 46
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=50.11 E-value=18 Score=30.51 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhcCCC
Q 021780 276 QVGFPLLFVCMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 276 ~~GFpllFV~~VaLlGi~lGyll~~~~ 302 (307)
.+|.+.+|+.++.++=.++-|++||..
T Consensus 50 ~~~~~~~~~~~~w~~~A~~ly~~RP~s 76 (103)
T PF11027_consen 50 DGGNSMFMMMMLWMVLAMALYLLRPSS 76 (103)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCchh
Confidence 367889999999999999999999864
No 47
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=49.77 E-value=38 Score=33.23 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
+.+||..|.++++|...|--.-..|--||.+-..|.|.|+.+|+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 34455556666666666555555555555555555555554444
No 48
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=49.44 E-value=64 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 021780 246 MEARKLATREKDMLKHELEVLRRKSNLR 273 (307)
Q Consensus 246 ~EEr~~aiqe~~kLqqEL~lLrr~~~~~ 273 (307)
-+|.++-...-....+||-.||++ |+|
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkE-NrK 68 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKE-NRK 68 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hhh
Confidence 366666666777888999999985 545
No 49
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=49.41 E-value=94 Score=25.15 Aligned_cols=50 Identities=24% Similarity=0.188 Sum_probs=43.8
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
--.+|+.+|..-+..+..-..+|.-|+..=..-++-+.+|+.+..-+++.
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34568888988888888889999999999999999999999999988874
No 50
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.37 E-value=13 Score=30.82 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhcC
Q 021780 285 CMVALIGLVVGYLSHP 300 (307)
Q Consensus 285 ~~VaLlGi~lGyll~~ 300 (307)
.+|||+||++||=+-|
T Consensus 32 AlvGllGilvGeq~~p 47 (93)
T COG4317 32 ALVGLLGILVGEQIVP 47 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999996543
No 51
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.19 E-value=91 Score=23.98 Aligned_cols=38 Identities=39% Similarity=0.471 Sum_probs=20.6
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
.|+.....+.+|.||+.-..-|. ++.+.|+.||+-+|.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~-------~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELE-------QEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 34444455666666654443333 455666777766663
No 52
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=47.11 E-value=1.3e+02 Score=25.60 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred CcchhHHHHHHHHHHHHHHHhc
Q 021780 278 GFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 278 GFpllFV~~VaLlGi~lGyll~ 299 (307)
--|+-=|-+-|-+|++||.||-
T Consensus 81 e~PWq~VGvaAaVGlllGlLls 102 (104)
T COG4575 81 ENPWQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred cCCchHHHHHHHHHHHHHHHHh
Confidence 3688888999999999999985
No 53
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=46.74 E-value=63 Score=25.67 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=31.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--HHHHHH--HHHHHHHH
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR--KLATRE--KDMLKHEL 263 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr--~~aiqe--~~kLqqEL 263 (307)
+++|+.++-....++-.|+.++..-+.+++++. -..+.. ...|++|-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~ 51 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTER 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788777777777888888888888888887 333321 22356664
No 54
>smart00340 HALZ homeobox associated leucin zipper.
Probab=46.43 E-value=37 Score=24.85 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021780 251 LATREKDMLKHELEVLRRK 269 (307)
Q Consensus 251 ~aiqe~~kLqqEL~lLrr~ 269 (307)
+-+.||++||+|+..||.-
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999974
No 55
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.11 E-value=1.4e+02 Score=25.33 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=35.7
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
..++..+++-|+.++..++.++.-+..-...|+.+-+++......++.|+.-++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777776666666666666666666666666666666666665553
No 56
>PRK13673 hypothetical protein; Provisional
Probab=44.77 E-value=30 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.499 Sum_probs=23.9
Q ss_pred HHHHHHHhhhccccccCCcchhHHHHHHHHHHHHHHHhc
Q 021780 261 HELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 261 qEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~lGyll~ 299 (307)
=||.+.|||.. + +.+||=..|++.+ ++-+.+||.+.
T Consensus 77 mEm~l~r~kk~-k-~~~~~~~~~ii~l-vlti~lG~~Lp 112 (118)
T PRK13673 77 MEMSLAKRKKG-K-PTGGFWWIFIIVL-VLTILLGLILP 112 (118)
T ss_pred HHHHHHHHHcC-C-CcccHHHHHHHHH-HHHHHHHHHhc
Confidence 38889998754 3 4577766666653 55567887654
No 57
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.76 E-value=94 Score=28.41 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=25.2
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELEV 265 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr-------~~aiqe~~kLqqEL~l 265 (307)
..+..||.....|..+....+..+.-+..|. ..+.+++..|+++|..
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666555555555555554444 4555555555555544
No 58
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.34 E-value=64 Score=23.89 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
-|..|+.+-....+++++|++|++.|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555566666666655
No 59
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.81 E-value=27 Score=27.83 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q 021780 282 LFVCMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 282 lFV~~VaLlGi~lGyll~~~~ 302 (307)
+|+++||.+.+++-|.-|...
T Consensus 12 vf~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 12 VFMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 599999999999999988543
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.76 E-value=97 Score=25.27 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
|++.+.++++|-.....-+.-++..|..-.++|++||+|-.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444556666666654
No 61
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.26 E-value=1.1e+02 Score=26.58 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
+.+|...++.+-.++..-++-+.-|.||...-.-||.+||.=|
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 3333334444444444444444444444444444444444433
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.24 E-value=1.9e+02 Score=30.13 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHHHHHHHHHH
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLV 293 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~ 293 (307)
.+.+-+.++++..++..++....+-...|..|+.+-..|.+.-++++..|.-++|....+ .-.|.|=-|.-+..-+.--
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~-~lpgip~~y~~~~~~~~~~ 456 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS-NLPGLPEDYLEMFFEVSDE 456 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHH
Confidence 455667788888888888888888899999999999999999999999999998865433 4479999999888777666
Q ss_pred HHHHhcCCC
Q 021780 294 VGYLSHPQN 302 (307)
Q Consensus 294 lGyll~~~~ 302 (307)
+.-|.+..+
T Consensus 457 i~~l~~~L~ 465 (569)
T PRK04778 457 IEALAEELE 465 (569)
T ss_pred HHHHHHHhc
Confidence 665555444
No 63
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.75 E-value=67 Score=30.20 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=35.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 229 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 229 ~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
..|+.++.++...|.+|.+++...-.+...||+++...|..
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999988763
No 64
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.68 E-value=26 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=14.4
Q ss_pred cchhH-HHHHHHHHHHHHHHhc
Q 021780 279 FPLLF-VCMVALIGLVVGYLSH 299 (307)
Q Consensus 279 FpllF-V~~VaLlGi~lGyll~ 299 (307)
.|+.. +++..++|+++|+++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 45544 4556678999999874
No 65
>PLN03188 kinesin-12 family protein; Provisional
Probab=41.22 E-value=75 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhh
Q 021780 238 AEHTIRKLMEAR----------KLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 238 a~~~I~kL~EEr----------~~aiqe~~kLqqEL~lLrr~~ 270 (307)
|..++.+|+|.- ..+-||+.||.++|+.|+||-
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777642 246689999999999999874
No 66
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=40.95 E-value=77 Score=25.25 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=23.9
Q ss_pred HHHhhhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 224 LKLKLNVMDSQLR-------EAEHTIRKLMEARKLATREKDMLK 260 (307)
Q Consensus 224 lk~kl~~~e~kl~-------Ea~~~I~kL~EEr~~aiqe~~kLq 260 (307)
|+..|+....+|+ -|..+|.||..||+.+.++..+||
T Consensus 27 LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 27 LRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 4444444444444 457799999988888877666553
No 67
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.61 E-value=80 Score=31.18 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=34.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
++..++.+++.+....++.+..|.++.+...++..+|++|++.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555666677777778888888888888888888888887774
No 68
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=40.45 E-value=43 Score=26.29 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHH-----HHHHHHHH--------HHHHHHHHHHHh
Q 021780 232 DSQLREAEHTIRKLMEA-----RKLATREK--------DMLKHELEVLRR 268 (307)
Q Consensus 232 e~kl~Ea~~~I~kL~EE-----r~~aiqe~--------~kLqqEL~lLrr 268 (307)
++.+-+|...|++|.|| ||.|-++- +-||.||+.|-.
T Consensus 11 der~~~AN~Ai~~L~~~DSI~NRR~AQR~VNK~~~D~~~~~QK~LD~i~A 60 (69)
T PF11621_consen 11 DERVMSANDAISKLQQKDSIQNRRAAQREVNKAPMDSKNHFQKQLDQINA 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Confidence 45577888899999875 56665554 447888887653
No 69
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.10 E-value=1.4e+02 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
---.|+.+.++-.+||++|+.|+..|+.+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888889999999999998865
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.35 E-value=77 Score=34.43 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
...+-.|++.||+.|.-+...=.|.+..|+.|+.-.++.-.+.+.||+|.|.|..|
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~K 475 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNK 475 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 45777899999999999888888999999999997778889999999999988865
No 71
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=38.98 E-value=2e+02 Score=24.84 Aligned_cols=56 Identities=25% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+..-+|+++.|=..|-+.+.--++=.+.|.+|.+|.+.+-+|+.+.-.|.+.|.++
T Consensus 78 Ii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888888776555557789999888888877777777777766553
No 72
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.47 E-value=1.2e+02 Score=30.47 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhH
Q 021780 243 RKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLF 283 (307)
Q Consensus 243 ~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllF 283 (307)
++=|++-+.-..+..+++|||+- +|.+ ...|-|+.=
T Consensus 304 ~~rT~~L~eVm~e~E~~KqemEe---~G~~--msDGaplvk 339 (384)
T KOG0972|consen 304 SSRTETLDEVMDEIEQLKQEMEE---QGAK--MSDGAPLVK 339 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccc--ccCCchHHH
Confidence 33333444445667788888873 3433 346888753
No 73
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=38.33 E-value=1.8e+02 Score=24.70 Aligned_cols=43 Identities=30% Similarity=0.330 Sum_probs=32.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDM-------LKHELEVL 266 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~k-------LqqEL~lL 266 (307)
=..+-+.+...|.+-+..|.|+..|-.+-.--|+. ||.||+..
T Consensus 24 EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 24 EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888899999999998877666665 46666643
No 74
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.11 E-value=4.4e+02 Score=26.42 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 021780 282 LFVCMVALIGLVVGY 296 (307)
Q Consensus 282 lFV~~VaLlGi~lGy 296 (307)
+++++-+++|+++|.
T Consensus 415 ~~l~~g~~~Gl~lg~ 429 (498)
T TIGR03007 415 LLMLAGLLGGLGAGI 429 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444544555555553
No 75
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=36.90 E-value=22 Score=37.45 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHhcC
Q 021780 279 FPLLFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 279 FpllFV~~VaLlGi~lGyll~~ 300 (307)
=+++||||++|||++|-|...+
T Consensus 193 s~y~~v~Y~lllGv~LPy~v~r 214 (610)
T COG5407 193 SMYAFVMYSLLLGVFLPYWVYR 214 (610)
T ss_pred CceeHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998753
No 76
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.71 E-value=33 Score=25.38 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=17.5
Q ss_pred Ccc-hhHHHHHHHHHHHHHHHhc
Q 021780 278 GFP-LLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 278 GFp-llFV~~VaLlGi~lGyll~ 299 (307)
||- .+|+++.+.+|..+|+.+.
T Consensus 28 GF~~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 28 GFWKTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 543 7888899999999998764
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.40 E-value=1.7e+02 Score=30.96 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=21.5
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARK----LATREKDMLKHELEVLRR 268 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~----~aiqe~~kLqqEL~lLrr 268 (307)
..+++..++..++..+.++..-+..|.++.+ .-.++++.|+.++..++.
T Consensus 224 ~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~ 276 (650)
T TIGR03185 224 KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEA 276 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555544444444222 223344455555554443
No 78
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=35.26 E-value=32 Score=30.04 Aligned_cols=21 Identities=57% Similarity=0.936 Sum_probs=16.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHH
Q 021780 276 QVGFPLLFVCMVALIGLVVGYL 297 (307)
Q Consensus 276 ~~GFpllFV~~VaLlGi~lGyl 297 (307)
++-| |+|.-+|||||.+.|.|
T Consensus 67 ~v~f-LvfmTlVaLIgTMCgIL 87 (130)
T PF02960_consen 67 QVHF-LVFMTLVALIGTMCGIL 87 (130)
T ss_pred Eeee-eHHHHHHHHHHHHHHHH
Confidence 3434 67888999999988765
No 79
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.16 E-value=52 Score=24.11 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
...+++-+.+..-++.+++++|++-||
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667777777778888888887765
No 80
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=34.82 E-value=2.2e+02 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 238 AEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 238 a~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
..--+.+++|+-+ .+++++|+|+..|.|+.+
T Consensus 34 i~P~~~~i~~k~k---~~~~~~~~e~~~l~k~~~ 64 (181)
T TIGR03592 34 LQPKLKEIQEKYK---DDPQKLQQEMMKLYKEEG 64 (181)
T ss_pred hhHHHHHHHHHHH---hhHHHHHHHHHHHHHHhC
Confidence 3344444544443 245778999988887643
No 81
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.65 E-value=2.5e+02 Score=23.65 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 239 EHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 239 ~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
.+.-..|.+.+.+--.++..|+.|+..+.++.
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666777888999998887653
No 82
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.65 E-value=87 Score=28.40 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=39.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.-.-...|+.++..++.++.+...-|..+..+|..+ .+|..+-+++..|+.+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~ 120 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELK 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776666555 888888888888887543
No 83
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.54 E-value=1.3e+02 Score=29.50 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Q 021780 235 LREAEHTIRKLMEARK--------------LATREKDMLKHELEVLRRK 269 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~--------------~aiqe~~kLqqEL~lLrr~ 269 (307)
.+|-+-.|.-|+||.+ +-+-+|++|.+||+++|..
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555544 3445667777888877753
No 84
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=34.51 E-value=2.3e+02 Score=26.77 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccCCcchhHHHHHHHHHHHHHHH
Q 021780 236 REAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN-LRRVQVGFPLLFVCMVALIGLVVGYL 297 (307)
Q Consensus 236 ~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~-~~~~~~GFpllFV~~VaLlGi~lGyl 297 (307)
.-....+.++++.+. ++.++.++|++.--++-. .+ ..+=|+=.|=.+++.++++.|-+
T Consensus 18 ~~~~~~~~~~~~~~~---~~~~e~~~~~~e~~~kaeeaq-K~Gi~~kIf~wi~~avsvv~~~~ 76 (306)
T PF04888_consen 18 KSKKEQIERASEAQE---KKAEEKAEEIEEAQEKAEEAQ-KAGIFSKIFGWIGTAVSVVAGAF 76 (306)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHH
Confidence 333456666666665 666666667664433321 12 12447777777777777666653
No 85
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=34.35 E-value=2e+02 Score=27.54 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 224 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 224 lk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+|..+.....+..|...-|.-|..|+..-.++...|++|+..||+-..
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556777788888999999999999999999999998544
No 86
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.79 E-value=1.4e+02 Score=24.45 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=20.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
+..|++|.-.|-.+|.-|.=|-.---.+|..|.+|.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888887777766544333333333333333
No 87
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.54 E-value=3.5e+02 Score=28.39 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=71.6
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHHHHHHHH
Q 021780 212 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIG 291 (307)
Q Consensus 212 ~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlG 291 (307)
...+.+...++++...+...+.+..+-...+..|+.+=..|-++-++++++|-.++|+-.++ .=.|.|==|.-+.....
T Consensus 372 ~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~-nLPGlp~~y~~~~~~~~ 450 (560)
T PF06160_consen 372 VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS-NLPGLPEDYLDYFFDVS 450 (560)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 33456667777888888888888888899999999999999999999999999999975543 34799988888877777
Q ss_pred HHHHHHhcCCC
Q 021780 292 LVVGYLSHPQN 302 (307)
Q Consensus 292 i~lGyll~~~~ 302 (307)
--+.-+....|
T Consensus 451 ~~i~~l~~~L~ 461 (560)
T PF06160_consen 451 DEIEELSDELN 461 (560)
T ss_pred HHHHHHHHHHh
Confidence 66666655443
No 88
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.21 E-value=2.2e+02 Score=21.76 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=29.1
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA 252 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~a 252 (307)
..+++.|++.|++|.+.|.....-..+-|...++|-..|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999888877777777666666654444
No 89
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.19 E-value=72 Score=28.07 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 021780 253 TREKDMLKHELEVLRRKSNLR 273 (307)
Q Consensus 253 iqe~~kLqqEL~lLrr~~~~~ 273 (307)
-|+-|||..||+.+.......
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477788888988888765544
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.06 E-value=2.4e+02 Score=27.30 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=24.0
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.+..++.++.....++.+...-...|+++......++.+++.|+.-+.+.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444555555555555555555555555443
No 91
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=32.73 E-value=56 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTI 242 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I 242 (307)
.+|+.+++.||+.+|+|.+-+.+-|
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988876533
No 92
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=32.18 E-value=1.6e+02 Score=22.51 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=24.8
Q ss_pred hhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 231 MDSQLREA-EHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 231 ~e~kl~Ea-~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
|.+||.+- ..+.++|..|-...+.++. .||+.+||+
T Consensus 16 Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~---~~lEevKrk 52 (56)
T PF08112_consen 16 LKSKLDEKKSEILSNLNMEYEKILKQRR---KELEEVKRK 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33344443 3377889999888877764 588888886
No 93
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=32.11 E-value=1.4e+02 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=27.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+..++.+....+.-+.+|+++.+..-+|..+|+.|++.|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555555666667777777777777778888777764
No 94
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=31.85 E-value=1.7e+02 Score=30.60 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=47.6
Q ss_pred hhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 021780 210 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 282 (307)
Q Consensus 210 ~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr-------~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpll 282 (307)
....+.++.++-+++-.|++. -+.|+-.-+...+||- ...+.+-|+.-|. ++.|- + +.||+..
T Consensus 198 S~llL~~l~~~W~~~s~KL~k---~l~~Tl~sfr~~Nee~~~k~~~~~~~lk~~dk~Ck~--il~K~---~--~~~c~w~ 267 (469)
T PF10151_consen 198 SVLLLKHLDDEWKESSKKLSK---SLKETLKSFRLKNEELLKKGKAKDESLKECDKACKV--ILGKM---S--GSSCPWT 267 (469)
T ss_pred HHHHHHHHHHhHHhhhHHHHH---HHHHHHHHHHHhHHHHHhccccchHHHHHHHHHHHH--HHHhh---c--CCCCchH
Confidence 344567777777777777763 5777766666666654 1344555666664 45541 2 3467765
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 021780 283 FVCMVALIGLVVGYLSHPQNR 303 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~~~~~ 303 (307)
.+++ -++.++.|++.+-.++
T Consensus 268 ~l~l-lllvliaG~l~yDv~~ 287 (469)
T PF10151_consen 268 RLLL-LLLVLIAGFLAYDVRS 287 (469)
T ss_pred HHHH-HHHHHHHHHHHHhhhc
Confidence 5433 3334444666665543
No 95
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=31.75 E-value=67 Score=20.46 Aligned_cols=22 Identities=27% Similarity=0.612 Sum_probs=13.9
Q ss_pred cCCcchhHH-HHHHHHHHHHHHH
Q 021780 276 QVGFPLLFV-CMVALIGLVVGYL 297 (307)
Q Consensus 276 ~~GFpllFV-~~VaLlGi~lGyl 297 (307)
|.||+++=+ +.++++|+++.+.
T Consensus 1 ~~GfTLiEllial~i~~i~~~~~ 23 (26)
T TIGR02532 1 QRGFTLIELLVVLAILGILAAIA 23 (26)
T ss_pred CCceeHHHHHHHHHHHHHHHHHh
Confidence 358998744 4556666666554
No 96
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=31.34 E-value=22 Score=36.66 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhccccccCCcchhHHHHHHH
Q 021780 244 KLMEARKLATREKDMLKHELE---VLRRKSNLRRVQVGFPLLFVCMVAL 289 (307)
Q Consensus 244 kL~EEr~~aiqe~~kLqqEL~---lLrr~~~~~~~~~GFpllFV~~VaL 289 (307)
-|+|||..-++++-..+.|++ -|||.++.. .+||.|=|==|+..
T Consensus 378 SlREe~~~~l~e~g~~~~~~eWYldLRryG~vp--hgGFGlGfER~lq~ 424 (446)
T KOG0554|consen 378 SLREERKARLKERGLTREELEWYLDLRRYGSVP--HGGFGLGFERMLQY 424 (446)
T ss_pred ccchhhHHHHHhcCCCccccceehhhhhcCCCC--CCcccccHHHHHHH
Confidence 489999888999888888887 789988877 79999988766544
No 97
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=31.25 E-value=43 Score=31.82 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhccc
Q 021780 260 KHELEVLRRKSNLR 273 (307)
Q Consensus 260 qqEL~lLrr~~~~~ 273 (307)
++|+-.||.=|.++
T Consensus 296 ~rEigilralG~~~ 309 (411)
T TIGR02212 296 QGDIAILRTLGATP 309 (411)
T ss_pred hhHHHHHHHcCCCh
Confidence 57999999988776
No 98
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.91 E-value=1.5e+02 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+...+.-+..+.++.....+...++.+|+..||++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555666666666553
No 99
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.14 E-value=67 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=20.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHT 241 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~ 241 (307)
.+|+.++..||+++|+|.+-+.+-
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E 34 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGE 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998876553
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.13 E-value=1.3e+02 Score=34.00 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred eeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeCCCCCCCccCCCCCCCCCCCCcchhhhhcccCCcccCCC
Q 021780 35 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP 114 (307)
Q Consensus 35 KFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~pP~~~p~ng~~~~~~~~~~~v~k~~l~~~~Ee~~~ 114 (307)
|-|||-=..|.+ .|++|...+ +.+.+=+|||+++..+|+.-++ .-|-..+...+
T Consensus 249 k~LI~IP~LP~~------~Pnf~~~sd---l~~~~~pvv~i~~Epsp~se~~-----------------~~n~~~~s~~~ 302 (980)
T KOG0980|consen 249 KRLIQIPTLPED------APNFLRQSD---LESYITPVVYIPSEPSPVSEDE-----------------EMNLPDTSAST 302 (980)
T ss_pred HHHhcCCCCCCC------Ccccccccc---hhhcCCCceecCCCCCCCCCcc-----------------ccccccccccc
Q ss_pred CCCcccch--hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccchhcccccccccccchhhhhhhhhh
Q 021780 115 GDGVAANA--EVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAA 192 (307)
Q Consensus 115 p~~~~~~~--~v~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 192 (307)
|-+.+..| ++-++|.. +|++.
T Consensus 303 pa~~~~~~~~~~~~~~~~---------------------------------------------------------~~~~~ 325 (980)
T KOG0980|consen 303 PAGHDPEPLDLFEAEPAS---------------------------------------------------------DPPNA 325 (980)
T ss_pred cccCCCCCccccccCccc---------------------------------------------------------CCccc
Q ss_pred hcccCCcccccc------ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 193 EDEQSRPAEDAS------ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 193 ~~~~~~~a~~~s------~~~~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
-...+++-.... .++..........-.-++..++.++.++-.+.|+...-.+=+||-. +||+|+..|
T Consensus 326 sqkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-------qLr~elaql 398 (980)
T KOG0980|consen 326 SQKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-------QLRNELAQL 398 (980)
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred Hh
Q 021780 267 RR 268 (307)
Q Consensus 267 rr 268 (307)
++
T Consensus 399 ~a 400 (980)
T KOG0980|consen 399 LA 400 (980)
T ss_pred HH
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.72 E-value=3.1e+02 Score=25.06 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=44.0
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
++++.-|..|.++..++.+...-|..|+-|...-.|...+|++|-+-|.++-.
T Consensus 79 ~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 79 KNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677888888999999999999999999999999999998887644
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.56 E-value=1.8e+02 Score=29.25 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 021780 251 LATREKDMLKHELEVL 266 (307)
Q Consensus 251 ~aiqe~~kLqqEL~lL 266 (307)
+.++++..|+.|++-|
T Consensus 355 ~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 355 TLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555444444
No 103
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.93 E-value=47 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021780 283 FVCMVALIGLVVGYLSH 299 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~ 299 (307)
.+++..++|.++||++-
T Consensus 2 ~iilali~G~~~Gff~a 18 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIA 18 (64)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666678999998863
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.68 E-value=1.6e+02 Score=31.44 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=38.1
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+..+.-..++++++++.-+.+-|.+|.+|.+.--+|+..|+.+|..+|+
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3333445677788888888888888888888888888888888887775
No 105
>smart00338 BRLZ basic region leucin zipper.
Probab=28.64 E-value=2e+02 Score=21.20 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 240 HTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 240 ~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
.-+..|..+...--.+.+.|++|+..|+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433344444444444444
No 106
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.51 E-value=2.6e+02 Score=24.71 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHHHHHHHHHH
Q 021780 239 EHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLV 293 (307)
Q Consensus 239 ~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~ 293 (307)
..+-.|+.|=++.-..+...|+-|++-+|-.-. | -.+.++|.|+..++|++
T Consensus 123 ~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~l-r---~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 123 AKQELKIQELNNKIDTEIANLRTEIESLKWDTL-R---WLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHH
Confidence 345555655555666777889999999887543 4 35666776666666654
No 107
>PRK01844 hypothetical protein; Provisional
Probab=28.23 E-value=45 Score=26.71 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=13.6
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 021780 279 FPLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 279 FpllFV~~VaLlGi~lGyll 298 (307)
+-++.+++..|+|.++||++
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556667788888886
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.22 E-value=2.7e+02 Score=23.86 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
++.|.+.+.-++..+.-...-|.+|..+|+.+-+|.=+|-.+.+-++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555665555555555555555554443
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.19 E-value=3.8e+02 Score=25.03 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=31.9
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE-------KDMLKHELEVLRR 268 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe-------~~kLqqEL~lLrr 268 (307)
++-.++.+++.++.........++.-|.+|+.+-..++.. .+.|+.||+++++
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 3445555555666555555556666677777666655544 4556667777764
No 110
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.08 E-value=5.4e+02 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=13.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHh
Q 021780 277 VGFPLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 277 ~GFpllFV~~VaLlGi~lGyll 298 (307)
-|--.+.+++||++|+++-.++
T Consensus 213 ~~~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 213 CSQWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred ccchhHHHHHHHHHHHHHHHhc
Confidence 3444555677788877765443
No 111
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=27.85 E-value=55 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.502 Sum_probs=11.8
Q ss_pred CCcchhHHHHH------HHHHHHHHHH
Q 021780 277 VGFPLLFVCMV------ALIGLVVGYL 297 (307)
Q Consensus 277 ~GFpllFV~~V------aLlGi~lGyl 297 (307)
.+...+|+++| .++||+|||+
T Consensus 40 ~~~~~lYIL~vmgfFgff~~gImlsyv 66 (129)
T PF02060_consen 40 DDNEYLYILVVMGFFGFFTVGIMLSYV 66 (129)
T ss_dssp -SSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHH
Confidence 34556666443 4567778875
No 112
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.83 E-value=1.9e+02 Score=21.75 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLA-TREKDMLKHELEVLR 267 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~a-iqe~~kLqqEL~lLr 267 (307)
+.+..+...+..+.||..+|..+.-|-++. ..++..++..+.-.|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr 67 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYR 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456667778888999999999887665433 244444444444333
No 113
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.56 E-value=2.2e+02 Score=25.93 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 231 MDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 231 ~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
+..+|++|......|+++-...+++-..|++||+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777776
No 114
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.49 E-value=3.8e+02 Score=23.67 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 215 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 215 ~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
.++..|.++-|.-+..++.++++..+-...|..|-.+-..+++.|-+++...+.
T Consensus 41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777766666777777776666666666666666666666655554443
No 115
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=27.02 E-value=44 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCcCC
Q 021780 280 PLLFVCMVALIGLVVGYLSHPQNRLS 305 (307)
Q Consensus 280 pllFV~~VaLlGi~lGyll~~~~~~~ 305 (307)
..+=+|.|||+|.+-+||-.+.+++-
T Consensus 119 GIvsav~valvGAvsSyiaYqkKKlC 144 (169)
T PF12301_consen 119 GIVSAVVVALVGAVSSYIAYQKKKLC 144 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45667899999999999998777653
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.76 E-value=2.8e+02 Score=25.19 Aligned_cols=8 Identities=25% Similarity=0.767 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 021780 291 GLVVGYLS 298 (307)
Q Consensus 291 Gi~lGyll 298 (307)
+..|||..
T Consensus 198 saALgyva 205 (302)
T PF10186_consen 198 SAALGYVA 205 (302)
T ss_pred HHHHHHHH
Confidence 34444443
No 117
>PRK00523 hypothetical protein; Provisional
Probab=26.73 E-value=52 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.2
Q ss_pred CcchhHHHHHHHHHHHHHHHh
Q 021780 278 GFPLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 278 GFpllFV~~VaLlGi~lGyll 298 (307)
|+-++.+++..|+|.++||++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666678899999886
No 118
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.62 E-value=48 Score=28.61 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHH--HHHhcC
Q 021780 280 PLLFVCMVALIGLVV--GYLSHP 300 (307)
Q Consensus 280 pllFV~~VaLlGi~l--Gyll~~ 300 (307)
-..|-+|.|+||++| -|++||
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888877 677764
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.54 E-value=6.2e+02 Score=24.82 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------
Q 021780 213 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK----------------------- 269 (307)
Q Consensus 213 ~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~----------------------- 269 (307)
....+..+++.++.+.+.++..+++.+.-+.++... ..+...|++|++.-|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~~~~~~~ 380 (444)
T TIGR03017 305 VTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQSNQTDIS 380 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceE
Q ss_pred -----hccccccCCcchhHHHHHHHHHHHHHHHh
Q 021780 270 -----SNLRRVQVGFPLLFVCMVALIGLVVGYLS 298 (307)
Q Consensus 270 -----~~~~~~~~GFpllFV~~VaLlGi~lGyll 298 (307)
..+..-..==..+++++.+++|+++|..+
T Consensus 381 Vi~~a~~P~~P~~P~~~~~l~~~~~~Gl~lg~~~ 414 (444)
T TIGR03017 381 ILNPAVPPLEPSSPRLLLNLVLSIFLGMLLGIGF 414 (444)
T ss_pred eeCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
No 120
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.35 E-value=3.5e+02 Score=29.01 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=28.7
Q ss_pred hhHHHHHHhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 219 KDFEELKLKLNVMDSQLREA-------EHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea-------~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+..++|+..++.+...+.+. ..-+.++.+|....-.++..|++|+.+.+|
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k 384 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK 384 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444 445555666666666677777777765444
No 121
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=26.34 E-value=68 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=19.2
Q ss_pred cch-hHHHHHHHHHHHHHHHhcCCCc
Q 021780 279 FPL-LFVCMVALIGLVVGYLSHPQNR 303 (307)
Q Consensus 279 Fpl-lFV~~VaLlGi~lGyll~~~~~ 303 (307)
.|. +-++.++++|+.+||+|-.++|
T Consensus 50 lP~~lll~~~~~vg~f~g~vmik~~~ 75 (78)
T PF07297_consen 50 LPIFLLLLGLSGVGTFLGYVMIKSKK 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344 3567778899999999987776
No 122
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=2.3e+02 Score=31.23 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=43.2
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
+.+-+..|+.++...+.++.+...-+..+..|..--.+.+..|+.|++-||++-
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777788888888888888888888888999999999999863
No 123
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.90 E-value=2.4e+02 Score=22.91 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 230 VMDSQLREAEHTIR-------KLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~-------kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.+++|...|-.+|. .|+|++++-.|+-+.+|+--+-|+++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 45666666655554 44555555555555455444445443
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.88 E-value=3.3e+02 Score=23.61 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEH--TIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~--~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
.+...+.+++.....+++.|....+ +...|.++-..-.+++..|+.-|+.||.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433322 2233344444444556666666666665
No 125
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=25.82 E-value=59 Score=31.32 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhccc
Q 021780 260 KHELEVLRRKSNLR 273 (307)
Q Consensus 260 qqEL~lLrr~~~~~ 273 (307)
++|+-.||.-+..+
T Consensus 294 ~rEigiLralG~~~ 307 (399)
T PRK10814 294 QGEVAILQTQGLTR 307 (399)
T ss_pred HHHHHHHHHcCCCh
Confidence 57999999988766
No 126
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=3.6e+02 Score=26.17 Aligned_cols=53 Identities=23% Similarity=0.127 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHHHHHHHHHHHHHHhc
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLlGi~lGyll~ 299 (307)
++.+=.+++.-..|+..-+|+|||.||+..-....-.| =++.+|+.-.|.+.|
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d------d~keiIs~kr~~~~K 132 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD------DSKEIISQKRQALSK 132 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHH
Confidence 44444444556678888899999988874221101122 456666666555544
No 127
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=25.52 E-value=19 Score=33.72 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=19.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHhc
Q 021780 275 VQVGFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 275 ~~~GFpllFV~~VaLlGi~lGyll~ 299 (307)
+..|+ ++++++|+|+|.-.||++|
T Consensus 158 s~~g~-ll~lllv~l~gGGa~yYfK 181 (218)
T PF14283_consen 158 SGMGS-LLLLLLVALIGGGAYYYFK 181 (218)
T ss_pred cchHH-HHHHHHHHHhhcceEEEEE
Confidence 34555 7788889999998888887
No 128
>COG5547 Small integral membrane protein [Function unknown]
Probab=25.42 E-value=57 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHhcC
Q 021780 280 PLLFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 280 pllFV~~VaLlGi~lGyll~~ 300 (307)
--+||++..+||+-.||+.++
T Consensus 31 Ktilviil~~lGv~iGl~~~r 51 (62)
T COG5547 31 KTILVIILILLGVYIGLYKKR 51 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999998874
No 129
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.24 E-value=62 Score=29.15 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhc
Q 021780 276 QVGFPLLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 276 ~~GFpllFV~~VaLlGi~lGyll~ 299 (307)
.-||.=+++++.+++|+.+||++-
T Consensus 98 ~L~~~e~~~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 98 YLFFSELIVIFGAFLGLALGFLLA 121 (150)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999873
No 130
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.18 E-value=1.8e+02 Score=23.99 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 238 AEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 238 a~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.+.-|.+|..+-.....|++-|++-+++.|++
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 34457777777777778888888888888875
No 131
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.01 E-value=3.1e+02 Score=26.35 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHH
Q 021780 238 AEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVC 285 (307)
Q Consensus 238 a~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~ 285 (307)
+..-|.++++|..+.+|+ .+|..|-.++.-+. ---||-.+|++
T Consensus 118 ~~~ei~k~r~e~~~ml~e---vK~~~E~y~k~~k~--~~~gi~aml~V 160 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQE---VKQSHEKYQKRQKS--MYKGIGAMLFV 160 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHhHHHHHHH
Confidence 344588888888888777 66677777654221 12355544443
No 132
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=24.98 E-value=60 Score=31.43 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhccc
Q 021780 260 KHELEVLRRKSNLR 273 (307)
Q Consensus 260 qqEL~lLrr~~~~~ 273 (307)
++|+..||.=|.++
T Consensus 297 ~rEigilralG~~~ 310 (412)
T PRK11146 297 SGDIAILRTLGAKD 310 (412)
T ss_pred HHHHHHHHHcCCCh
Confidence 47999999988766
No 133
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=24.95 E-value=61 Score=32.42 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=26.2
Q ss_pred CccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEE
Q 021780 3 TGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQG 40 (307)
Q Consensus 3 PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQS 40 (307)
.+.|+|.||++..|.|+.||.+. - --+..+.+.+
T Consensus 292 ~~~gvilPGe~~~~~~~F~s~~~--G--if~E~W~L~t 325 (426)
T PF14646_consen 292 TSSGVILPGETRNFPFMFKSRKV--G--IFKERWELRT 325 (426)
T ss_pred CCCCEECCCceEEEEEEEeCCCc--e--EEEEEEEEEE
Confidence 47899999999999999999862 1 2255666665
No 134
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.93 E-value=4.5e+02 Score=22.60 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=46.8
Q ss_pred CchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 208 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 208 ~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+.-...+..+....+..|.....|...-.+-++....|..++.+..|-..-||-+++-+|+.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666777777777777777777778888999999999999999999888877764
No 135
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.92 E-value=2.9e+02 Score=27.79 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
.+.+|.+.+....++..+|+.++..|+.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555554443
No 136
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=24.49 E-value=62 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhccccccC-CcchhHHHHH----HHHHHHHHHHh
Q 021780 260 KHELEVLRRKSNLRRVQV-GFPLLFVCMV----ALIGLVVGYLS 298 (307)
Q Consensus 260 qqEL~lLrr~~~~~~~~~-GFpllFV~~V----aLlGi~lGyll 298 (307)
++|+-.||.=|.++ .+- ..=++-.+++ +++|+++|+++
T Consensus 296 ~~ei~~l~alG~~~-~~i~~~~~~e~~~l~~~G~~lG~~lg~~l 338 (411)
T TIGR02213 296 QGDIAILRTLGAND-GLIKRIFVWYGLQAGMKGSLIGIVLGVIV 338 (411)
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999888766 332 1112222444 45555555543
No 137
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=24.48 E-value=44 Score=33.48 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=18.2
Q ss_pred CCcchhHHHHHH-HHHHHHHHHhcC
Q 021780 277 VGFPLLFVCMVA-LIGLVVGYLSHP 300 (307)
Q Consensus 277 ~GFpllFV~~Va-LlGi~lGyll~~ 300 (307)
.|++..-|++|| |+|+|..+||-|
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 588888776665 888888888764
No 138
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=24.36 E-value=3.1e+02 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=35.7
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021780 211 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 253 (307)
Q Consensus 211 ~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ai 253 (307)
+.+...+.+|+++|+..|...+.+..+|..+|..+++--+.+.
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q 70 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQ 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence 3456678999999999999999999999999988887654443
No 139
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=77 Score=25.39 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 021780 281 LLFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 281 llFV~~VaLlGi~lGyll~ 299 (307)
++++++--|+|+++||++-
T Consensus 7 il~ivl~ll~G~~~G~fia 25 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666677999999874
No 140
>PF15456 Uds1: Up-regulated During Septation
Probab=24.30 E-value=4.6e+02 Score=22.55 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=40.5
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 215 LKLAKDFEELKLKLNVMDSQLREAEHTIRKL------------------MEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 215 ~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL------------------~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
..++.=++-++.|++ ++.|+++|-..|.+| .||.....+-.+.+.+||..+.++.
T Consensus 32 ~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 32 RSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345555666777776 888999988888888 4666677777888888888777643
No 141
>PHA03029 hypothetical protein; Provisional
Probab=24.23 E-value=40 Score=27.63 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 021780 285 CMVALIGLVVGYLSHPQNR 303 (307)
Q Consensus 285 ~~VaLlGi~lGyll~~~~~ 303 (307)
++.+++|++-|||+. +|.
T Consensus 19 lila~igiiwg~lls-i~k 36 (92)
T PHA03029 19 LILAIIGIIWGFLLS-INK 36 (92)
T ss_pred HHHHHHHHHHHHHHH-HHH
Confidence 456889999999997 654
No 142
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=24.22 E-value=1.8e+02 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 021780 283 FVCMVALIGLVVGYLS 298 (307)
Q Consensus 283 FV~~VaLlGi~lGyll 298 (307)
+.-++||||+++|.+.
T Consensus 64 ~aP~lGLlGTv~Gmi~ 79 (139)
T PF01618_consen 64 IAPLLGLLGTVIGMIE 79 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457899999999764
No 143
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.11 E-value=2.1e+02 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
..++..-+.-...++.++...+..|..+.+..-++.++|++||..|..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444455566667777777778887777787888888888877764
No 144
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=23.91 E-value=2.7e+02 Score=30.60 Aligned_cols=67 Identities=27% Similarity=0.282 Sum_probs=49.3
Q ss_pred ccCCchhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 205 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+.+||-|++.-.+..-+.+|...-..|...++-+...=.||.|.-+.--+|..++++|++.-|++.+
T Consensus 315 etKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~ 381 (832)
T KOG2077|consen 315 ETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAK 381 (832)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777766666666677766666777777666666677777777777788999999998888744
No 145
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.63 E-value=96 Score=24.72 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 021780 281 LLFVCMVALIGLVVGYLSHPQ 301 (307)
Q Consensus 281 llFV~~VaLlGi~lGyll~~~ 301 (307)
.+|+++||.+.+++=|.-|+.
T Consensus 11 iif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 458899999999999997643
No 146
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=23.60 E-value=3.2e+02 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccc
Q 021780 237 EAEHTIRKLMEARK---LATREKDMLKHELEVLRRKSNLR 273 (307)
Q Consensus 237 Ea~~~I~kL~EEr~---~aiqe~~kLqqEL~lLrr~~~~~ 273 (307)
+..-.+.+++|.-+ ...++.+++|+|+..|.|+.+-+
T Consensus 164 ~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~gin 203 (357)
T PRK02201 164 ELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNIS 203 (357)
T ss_pred HhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 33334444444332 34566889999999999865433
No 147
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=23.59 E-value=1.2e+02 Score=27.78 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=14.4
Q ss_pred CcchhHH-----HHHHHHHHHHHHH
Q 021780 278 GFPLLFV-----CMVALIGLVVGYL 297 (307)
Q Consensus 278 GFpllFV-----~~VaLlGi~lGyl 297 (307)
|.++|=. =++||||+++|-+
T Consensus 118 ~l~~L~ti~~~APllGLLGTV~Gmi 142 (211)
T TIGR02797 118 GTGVLATIGATAPFVGLFGTVWGIM 142 (211)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 3789999999965
No 148
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=23.57 E-value=41 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhc
Q 021780 285 CMVALIGLVVGYLSH 299 (307)
Q Consensus 285 ~~VaLlGi~lGyll~ 299 (307)
.++||+||++|+-+-
T Consensus 31 Al~GllGi~~Ge~~~ 45 (90)
T PF07235_consen 31 ALVGLLGILLGEQAI 45 (90)
T ss_pred HHHHHHHHhcccchh
Confidence 489999999998553
No 149
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.50 E-value=2.4e+02 Score=21.44 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 236 REAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 236 ~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
.....-|.++..+....-.+++.|+.|...|.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556666666666677777777776554
No 150
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.03 E-value=2.7e+02 Score=23.13 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=18.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 227 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 262 (307)
Q Consensus 227 kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqE 262 (307)
.+..++.++.++..-+.+|+.+-...-++..+|++|
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555
No 151
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.01 E-value=3.1e+02 Score=20.13 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 236 REAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 236 ~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
.+-+.-+..|..+...-..+++.|++|+.-|+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555566666666666554
No 152
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.93 E-value=4.1e+02 Score=25.81 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=49.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhHHHHHHHH
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALI 290 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GFpllFV~~VaLl 290 (307)
.-.+..+.++..|+.+++|. ++-+.+|..+=..--...++.+.||-+|+.- + +.+||.--|.+..|.
T Consensus 60 ~~~~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY---k--D~EYPvK~vqIa~L~ 126 (258)
T PF15397_consen 60 SNHKQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLSTY---K--DHEYPVKAVQIANLV 126 (258)
T ss_pred cChHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h--hhhhhHHHHHHHHHH
Confidence 33456666777777766553 4578888888888888889999999999864 2 578998887766553
No 153
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=22.90 E-value=78 Score=28.63 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC
Q 021780 281 LLFVCMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 281 llFV~~VaLlGi~lGyll~~~~ 302 (307)
+.|++..++.|+++||++|...
T Consensus 61 ~~~~~~~~l~g~~lg~~~~~~~ 82 (290)
T PF09991_consen 61 LFYLLFFGLPGLVLGYLLRKKR 82 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 5677888999999999998543
No 154
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.80 E-value=1.4e+02 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 241 TIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 241 ~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+|.-|+||...--++.+||.-||..++|.
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678888888888888888888887764
No 155
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=22.71 E-value=64 Score=29.93 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=30.1
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
+|.++-.+...++.++....-.-..--++.-...+++.+|++|+..||++.
T Consensus 215 ~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l 265 (268)
T PF13234_consen 215 EFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQL 265 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555444221111223466677888999999999999864
No 156
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.59 E-value=1.9e+02 Score=25.87 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
++..++..++.++.+-...|..|+.++..--++...|..||...++
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.56 E-value=2.7e+02 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 239 EHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 239 ~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+.-|.+|..+.....+|+..|+.+|+.-|..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999988865
No 158
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=22.55 E-value=6.3e+02 Score=23.45 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhh
Q 021780 256 KDMLKHELEVLRRK 269 (307)
Q Consensus 256 ~~kLqqEL~lLrr~ 269 (307)
..+|+.|-.-|...
T Consensus 208 ~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 208 LSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666666654
No 159
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.39 E-value=3.7e+02 Score=26.03 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=18.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 251 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ 251 (307)
....+++.++.++.+++.++.+-..-|..+++++..
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554445554444443
No 160
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.35 E-value=2.9e+02 Score=26.26 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=25.2
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
-++.++..++|...+.+-.+-..-...+..|=+....++++||.+++
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444555555555444455555555555566666666665543
No 161
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=1e+02 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHH-HHHHhcCCCc
Q 021780 282 LFVCMVALIGLV-VGYLSHPQNR 303 (307)
Q Consensus 282 lFV~~VaLlGi~-lGyll~~~~~ 303 (307)
+|+++.|+||.+ +-|||++..|
T Consensus 254 ~fli~lgvLafi~~i~lM~rlGr 276 (299)
T KOG3970|consen 254 LFLIFLGVLAFITIIMLMKRLGR 276 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 799999999865 5677776544
No 162
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.25 E-value=3.7e+02 Score=21.00 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 229 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 229 ~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
..++.|+..--..-.+|++|.+.--++...++.|=..|+.|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766555555555555555443
No 163
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=1.4e+02 Score=27.76 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=32.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
.||--++||+++|.| -..++.+..+.+.++|++||-+.+
T Consensus 121 MlEY~leEAeaLLkk---nl~sa~k~l~~~~~DldfLrdQvT 159 (187)
T KOG3313|consen 121 MLEYDLEEAEALLKK---NLTSAVKSLDVLEEDLDFLRDQVT 159 (187)
T ss_pred EEEecHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhce
Confidence 456778999998754 567899999999999999997654
No 164
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.05 E-value=3.7e+02 Score=26.65 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=27.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 271 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~ 271 (307)
+|..+...+.++..|--.-|..|+++|+.....-+.|.++..-++++.+
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444445555566666666666666666666666666544
No 165
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.00 E-value=66 Score=25.16 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 021780 283 FVCMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~~~~ 302 (307)
.|++-|||-+-|||+++++-
T Consensus 9 li~lcALIf~pLgyl~~r~~ 28 (62)
T TIGR03493 9 LVLLCALIFFPLGYLARRSL 28 (62)
T ss_pred HHHHHHHHHHhHHHHHHhhh
Confidence 46778999999999998753
No 166
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.99 E-value=3.5e+02 Score=24.00 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=29.5
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
+.++-++.+...++.-+......|.+|......-.++.++++|+.
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666677777777666666666666664
No 167
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=21.97 E-value=88 Score=22.24 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 021780 282 LFVCMVALIGLVVGYLSH 299 (307)
Q Consensus 282 lFV~~VaLlGi~lGyll~ 299 (307)
++++++.+++++++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLA 20 (70)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666677777664
No 168
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.74 E-value=1e+02 Score=23.49 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q 021780 282 LFVCMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 282 lFV~~VaLlGi~lGyll~~~~ 302 (307)
+-+++=|++|.++|||+-|-.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~s 23 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKS 23 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344556789999999998754
No 169
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.43 E-value=4.3e+02 Score=28.89 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=36.6
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Q 021780 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE----------KDMLKHELEVLRR 268 (307)
Q Consensus 209 ~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe----------~~kLqqEL~lLrr 268 (307)
..+.....++.|++.++..+.+...++..+-+.+.+.-..+++++.+ .+.++.||-.||.
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 35556677888888887777666655555444444444444444443 3456677777775
No 170
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.34 E-value=45 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 021780 283 FVCMVALIGLVVGYLSHPQNR 303 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~~~~~ 303 (307)
++.+.|++++++||+.....+
T Consensus 7 v~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999998765443
No 171
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=21.16 E-value=83 Score=22.98 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhc
Q 021780 285 CMVALIGLVVGYLSH 299 (307)
Q Consensus 285 ~~VaLlGi~lGyll~ 299 (307)
+++-+++|.+||++-
T Consensus 30 ll~vllsIalGylvs 44 (48)
T PF06612_consen 30 LLIVLLSIALGYLVS 44 (48)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344567889999864
No 172
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.15 E-value=5.6e+02 Score=23.21 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=25.4
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKL---MEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL---~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
..+..|+.+.+.++.+..+...-+..+ .+|++. .++.+.+.|+++|++.+
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 344445555555555555443333332 122221 34566788888888754
No 173
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=21.12 E-value=90 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.656 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 021780 282 LFVCMVALIGLVVGYLSHP 300 (307)
Q Consensus 282 lFV~~VaLlGi~lGyll~~ 300 (307)
.+.-++|++|+.+||.+-+
T Consensus 28 ~laGl~gi~gm~~G~~~~~ 46 (49)
T TIGR03510 28 VLAGLVGLLGMLLGEQAVP 46 (49)
T ss_pred hHHHHHHHHHHHHhHHHHH
Confidence 4556899999999998653
No 174
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.06 E-value=5.2e+02 Score=21.95 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=37.4
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+..+..|+.....|..-.-+-.+--..|+++=+.--+..++++||++.|.-+
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~Fr 55 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFR 55 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556555555556666789999888889999999999988653
No 175
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=21.04 E-value=3.2e+02 Score=22.92 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLA 252 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~a 252 (307)
||-...+-.-+--+||-+||.+|.+||.+.
T Consensus 21 ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~ 50 (94)
T PF04576_consen 21 ELEEERSAAASAASEAMAMILRLQEEKAAV 50 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 343444444455678999999999999754
No 176
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.86 E-value=2.7e+02 Score=21.95 Aligned_cols=50 Identities=30% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 214 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 214 ~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
...+.+.-=+||.++.-|+..+..+ --+-...+++||-.|+.|++-|+|.
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~~~------~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQKL------GPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556888887777776621 1223334455555555555555543
No 177
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.65 E-value=3.8e+02 Score=26.36 Aligned_cols=40 Identities=38% Similarity=0.508 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.++-+|+.-.+.-..|.--++.|+.-+++||-+|+.|+||
T Consensus 27 TLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk 66 (277)
T PF15030_consen 27 TLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKK 66 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666666666666666654
No 178
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=20.41 E-value=61 Score=23.79 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 021780 282 LFVCMVALIGLVVGYLS 298 (307)
Q Consensus 282 lFV~~VaLlGi~lGyll 298 (307)
+.+++..++|+++||-+
T Consensus 6 lL~~~~l~iGlmIGY~v 22 (47)
T PF11772_consen 6 LLAILALAIGLMIGYGV 22 (47)
T ss_pred HHHHHHHHHHHHeeeee
Confidence 34566677899999963
No 179
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.21 E-value=4.9e+02 Score=25.68 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+.-||-+|-++++.+.+...-+.+..-|-..--+..+.|+.|++.||-
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443322222233333445556666666654
No 180
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.16 E-value=2.8e+02 Score=22.98 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
.++.++.+++.-+.+|. ++|+.|+.|++.|+
T Consensus 31 ~l~~q~~~~~~e~~~l~-------~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLK-------ARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 33444444444444444 44444444444444
Done!