Query 021780
Match_columns 307
No_of_seqs 167 out of 294
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 99.8 5.1E-20 1.7E-24 157.1 7.1 80 2-86 66-147 (152)
2 2cri_A Vesicle-associated memb 99.8 4E-19 1.4E-23 150.1 9.5 76 2-81 62-137 (147)
3 1z9l_A Vesicle-associated memb 99.7 2.8E-18 9.7E-23 141.0 8.8 71 2-76 58-128 (128)
4 1msp_A MSP, major sperm protei 99.6 1.4E-15 5E-20 125.7 8.3 70 2-75 56-125 (126)
5 1m1s_A WR4; structural genomic 99.2 1.6E-11 5.4E-16 101.8 7.7 61 2-73 54-114 (116)
6 1row_A SSP-19, MSP-domain prot 99.2 1.9E-11 6.6E-16 99.6 6.6 61 2-73 46-106 (109)
7 3efg_A Protein SLYX homolog; x 85.2 2.7 9.4E-05 32.2 6.9 50 223-272 11-60 (78)
8 3hnw_A Uncharacterized protein 81.4 4.5 0.00015 33.9 7.3 33 217-249 66-98 (138)
9 3i00_A HIP-I, huntingtin-inter 78.1 10 0.00035 31.3 8.2 58 209-269 12-83 (120)
10 2ys4_A Hydrocephalus-inducing 76.5 1.8 6.1E-05 34.2 3.2 23 2-24 70-92 (122)
11 3hnw_A Uncharacterized protein 76.3 11 0.00038 31.5 8.1 45 221-265 91-135 (138)
12 1nlw_A MAD protein, MAX dimeri 72.2 8.1 0.00028 29.5 5.8 36 234-269 41-76 (80)
13 3qbt_B Inositol polyphosphate 69.9 2.6 9E-05 34.7 2.8 21 3-23 81-101 (140)
14 2e6j_A Hydin protein; PAPD, st 69.7 2.2 7.6E-05 32.5 2.1 23 2-24 60-82 (112)
15 2oqq_A Transcription factor HY 66.7 12 0.0004 26.2 5.0 34 230-263 7-40 (42)
16 3m9b_A Proteasome-associated A 66.3 5.9 0.0002 36.7 4.6 39 230-268 58-96 (251)
17 1gd2_E Transcription factor PA 64.4 8.9 0.0003 29.0 4.5 43 219-268 21-64 (70)
18 2jee_A YIIU; FTSZ, septum, coi 62.8 20 0.00067 28.1 6.2 18 228-245 8-25 (81)
19 2eqb_B RAB guanine nucleotide 59.3 27 0.00091 28.2 6.6 45 223-267 9-60 (97)
20 2qyw_A Vesicle transport throu 55.2 42 0.0014 26.4 7.2 47 222-268 45-99 (102)
21 1nkp_B MAX protein, MYC proto- 52.9 31 0.001 25.8 5.8 36 235-270 42-77 (83)
22 1lwu_C Fibrinogen gamma chain; 52.2 35 0.0012 32.4 7.3 53 217-269 3-55 (323)
23 1l8d_A DNA double-strand break 52.1 25 0.00084 27.2 5.3 42 227-268 4-45 (112)
24 1wt6_A Myotonin-protein kinase 51.7 41 0.0014 26.4 6.3 36 227-269 39-74 (81)
25 3vkg_A Dynein heavy chain, cyt 51.6 32 0.0011 41.7 8.3 54 216-269 2018-2071(3245)
26 3onj_A T-snare VTI1; helix, HA 51.5 44 0.0015 26.0 6.7 39 222-260 30-71 (97)
27 2fxo_A Myosin heavy chain, car 50.2 68 0.0023 26.0 7.9 47 220-266 77-123 (129)
28 1vcs_A Vesicle transport throu 48.3 26 0.00088 27.6 4.9 28 223-250 35-62 (102)
29 3oja_B Anopheles plasmodium-re 45.5 28 0.00096 33.5 5.6 10 258-267 562-571 (597)
30 4emc_A Monopolin complex subun 45.4 20 0.00069 32.0 4.2 39 231-269 11-49 (190)
31 1nkp_A C-MYC, MYC proto-oncoge 45.3 45 0.0016 25.6 5.8 35 235-269 47-81 (88)
32 3t97_C Nuclear pore glycoprote 44.9 54 0.0018 24.3 5.9 40 230-269 2-41 (64)
33 2fxo_A Myosin heavy chain, car 43.9 81 0.0028 25.5 7.4 46 220-265 14-59 (129)
34 3qis_A Inositol polyphosphate 43.2 13 0.00044 35.0 2.8 22 3-24 84-105 (366)
35 3nmd_A CGMP dependent protein 42.0 72 0.0025 24.4 6.3 40 228-267 28-67 (72)
36 3htk_A Structural maintenance 41.2 87 0.003 21.7 6.6 45 218-262 11-55 (60)
37 3s4r_A Vimentin; alpha-helix, 41.2 61 0.0021 25.2 6.0 38 232-269 55-92 (93)
38 3hhm_B NISH2 P85alpha; PI3KCA, 40.9 82 0.0028 30.1 8.0 61 209-269 195-255 (373)
39 3na7_A HP0958; flagellar bioge 39.4 1E+02 0.0036 27.2 8.0 27 216-242 94-120 (256)
40 3m91_A Proteasome-associated A 39.1 87 0.003 22.3 6.0 36 231-266 14-49 (51)
41 2dfs_A Myosin-5A; myosin-V, in 38.6 73 0.0025 34.5 8.0 32 223-254 981-1012(1080)
42 4etp_A Kinesin-like protein KA 38.5 79 0.0027 30.3 7.5 50 218-267 9-58 (403)
43 3l4q_C Phosphatidylinositol 3- 37.9 68 0.0023 28.0 6.3 62 209-270 86-147 (170)
44 3ol1_A Vimentin; structural ge 37.3 1.6E+02 0.0055 23.6 8.5 50 219-268 48-104 (119)
45 1ic2_A Tropomyosin alpha chain 37.0 1.2E+02 0.004 22.7 6.8 48 219-266 13-60 (81)
46 1ykh_B RNA polymerase II holoe 36.9 1E+02 0.0035 25.3 7.0 53 217-269 69-121 (132)
47 3q0x_A Centriole protein; cent 36.8 73 0.0025 28.9 6.6 45 225-269 170-214 (228)
48 1gd2_E Transcription factor PA 36.0 60 0.002 24.4 5.0 25 222-246 32-56 (70)
49 2w6a_A ARF GTPase-activating p 35.7 1.4E+02 0.0047 22.4 7.0 47 221-267 15-61 (63)
50 1ic2_A Tropomyosin alpha chain 35.6 1.4E+02 0.0047 22.3 7.9 45 225-269 5-49 (81)
51 1s1c_X RHO-associated, coiled- 35.6 1.3E+02 0.0043 22.9 6.8 48 216-263 3-52 (71)
52 1uix_A RHO-associated kinase; 34.3 1.5E+02 0.005 22.6 6.9 47 217-263 2-52 (71)
53 1yke_B RNA polymerase II holoe 34.1 1.1E+02 0.0037 25.9 6.9 52 218-269 70-121 (151)
54 1m1j_C Fibrinogen gamma chain; 34.0 1.1E+02 0.0038 29.8 7.8 37 212-248 31-67 (409)
55 2jee_A YIIU; FTSZ, septum, coi 33.1 1.7E+02 0.0059 22.7 8.0 46 223-268 24-69 (81)
56 3swk_A Vimentin; cytoskeleton, 31.7 1.6E+02 0.0055 22.5 6.9 53 216-268 25-84 (86)
57 3ghg_C Fibrinogen gamma chain; 30.6 1.5E+02 0.0051 29.1 8.0 38 211-248 30-67 (411)
58 3u59_A Tropomyosin beta chain; 30.4 1.6E+02 0.0054 22.8 6.8 42 227-268 10-51 (101)
59 1m1j_B Fibrinogen beta chain; 30.4 1.7E+02 0.0057 29.1 8.5 34 212-245 93-126 (464)
60 2wg5_A General control protein 30.1 53 0.0018 26.1 4.1 26 243-268 10-35 (109)
61 3na7_A HP0958; flagellar bioge 29.1 2.3E+02 0.0077 25.0 8.5 15 254-268 90-104 (256)
62 4fm3_A Uncharacterized hypothe 27.9 99 0.0034 24.8 5.3 35 229-263 60-94 (98)
63 3cl3_D NF-kappa-B essential mo 27.2 12 0.00041 31.7 -0.2 41 228-268 11-51 (130)
64 3u1c_A Tropomyosin alpha-1 cha 27.0 2E+02 0.0067 22.5 6.8 34 231-264 28-61 (101)
65 3qc1_A Immunoglobulin-binding 26.1 1.4E+02 0.0049 26.9 6.6 50 219-268 184-241 (243)
66 2ks1_B Epidermal growth factor 26.0 44 0.0015 23.2 2.5 18 285-302 22-39 (44)
67 3hd7_B Syntaxin-1A; membrane p 25.4 2.5E+02 0.0084 22.0 8.0 30 237-266 46-75 (109)
68 2ls4_A High affinity copper up 29.5 17 0.00057 22.9 0.0 21 283-303 4-24 (26)
69 2l2t_A Receptor tyrosine-prote 22.9 55 0.0019 22.8 2.5 17 286-302 22-38 (44)
70 3s9g_A Protein hexim1; cyclin 22.6 3E+02 0.01 22.3 7.2 29 240-268 65-93 (104)
71 1go4_E MAD1 (mitotic arrest de 22.4 1.3E+02 0.0043 24.3 4.9 38 242-279 14-51 (100)
72 1t6f_A Geminin; coiled-coil, c 22.4 60 0.0021 22.0 2.5 15 251-265 4-18 (37)
73 1naf_A ADP-ribosylation factor 22.3 1.5E+02 0.0053 25.2 5.8 35 235-269 34-68 (158)
74 3u06_A Protein claret segregat 22.1 2.1E+02 0.007 27.6 7.3 50 218-267 9-58 (412)
75 2dfs_A Myosin-5A; myosin-V, in 22.0 2.6E+02 0.0088 30.3 8.7 14 254-267 1063-1076(1080)
76 1wlq_A Geminin; coiled-coil; 2 21.9 1E+02 0.0035 24.2 4.2 8 259-266 57-64 (83)
77 4h22_A Leucine-rich repeat fli 21.2 3.3E+02 0.011 22.0 8.7 54 217-270 28-81 (103)
78 1m1j_C Fibrinogen gamma chain; 21.0 2.5E+02 0.0087 27.3 7.7 52 217-268 82-133 (409)
79 1oxz_A ADP-ribosylation factor 21.0 1.6E+02 0.0055 25.7 5.8 35 235-269 50-84 (186)
80 3ghg_B Fibrinogen beta chain; 21.0 1.9E+02 0.0066 28.9 6.9 39 211-249 87-125 (461)
81 2v4h_A NF-kappa-B essential mo 20.7 3.5E+02 0.012 22.1 7.4 20 250-269 86-105 (110)
82 1hjb_A Ccaat/enhancer binding 20.5 2.1E+02 0.0073 22.2 5.8 34 236-269 39-72 (87)
83 2zvf_A Alanyl-tRNA synthetase; 20.0 2.1E+02 0.0073 23.2 6.1 48 236-283 28-77 (171)
84 2e7s_A RAB guanine nucleotide 20.0 1.2E+02 0.004 25.7 4.5 28 240-267 50-80 (135)
85 2i1j_A Moesin; FERM, coiled-co 20.0 24 0.00083 35.4 0.3 40 230-269 409-448 (575)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.80 E-value=5.1e-20 Score=157.13 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeC--CCCCCcccchhhhcccCCCcceeeeeEEEEeCCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ 79 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp--~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~ 79 (307)
-||.|+|+||++++|.|+|||++++ +||||||||++.++ ++.+..|+. ++|++..+..++++||||+|+.+++
T Consensus 66 rP~~GiI~P~~s~~V~V~lq~~~~~----~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~ 140 (152)
T 1wic_A 66 KPSNSSCDPGASIDIIVSPHGGLTV----SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSK 140 (152)
T ss_dssp ESSEEEECTTCEEEEEEEECSSSCC----CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCS
T ss_pred cCCCcEECCCCeEEEEEEecCcccC----CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCC
Confidence 5999999999999999999999752 89999999999999 666677884 7998888899999999999999999
Q ss_pred CCCccCC
Q 021780 80 SPVLLPR 86 (307)
Q Consensus 80 pP~~~p~ 86 (307)
||+++..
T Consensus 141 p~s~~~~ 147 (152)
T 1wic_A 141 PNSLMLS 147 (152)
T ss_dssp SSSSCCC
T ss_pred CCCcccc
Confidence 9876544
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=4e-19 Score=150.09 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeCCCCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSP 81 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~P~~pP 81 (307)
-||.|+|+||++++|.|+|||++ .+|+++||||||||++.++++.+ |+ .++|.+..+..++++||||+|+.|++.+
T Consensus 62 rP~~GiI~P~~s~~v~V~l~~~~-~~p~~~~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 62 RPNSGIIDPGSIVTVSVMLQPFD-YDPNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEND 137 (147)
T ss_dssp ESSEEECCTTCEEEEEEEECCCC-CCTTCCSCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred cCCCcEECCCCeEEEEEEECCCc-CCccccCCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence 59999999999999999999996 56778999999999999998643 44 6789888889999999999999888664
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.74 E-value=2.8e-18 Score=141.05 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEeC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMS 76 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv~ 76 (307)
-||+|+|+||++++|.|+|||++ .+|+++|||||+||++.+++|.+ |+ .++|.+..+..++|+||||+|.+
T Consensus 58 rP~~G~i~P~~s~~v~V~~~~~~-~~p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~~ 128 (128)
T 1z9l_A 58 RPNSGVIDPGSIVTVSVMLQPFD-YDPNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEM 128 (128)
T ss_dssp ESCEEEECTTCEEEEEEEECCCC-CCTTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEEC
T ss_pred eCCCcEECCCCeEEEEEEECcCc-CCcccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEeC
Confidence 59999999999999999999996 46678999999999999998653 45 68999888889999999999963
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.60 E-value=1.4e-15 Score=125.73 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEEEe
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 75 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVVyv 75 (307)
-||+|+|+||++|+|.|+|||+++.|++++ |||||||++.+|+|.+ +|++.+||.++ ..+..++|+|-|-
T Consensus 56 rP~~Gii~P~~s~~v~V~~q~~~~~~~~~~-kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 56 DPPCGVLDPKEKVLMAVSCDTFNAATEDLN-NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp ESCEEEECTTCEEEEEEEECCCCGGGSCCS-SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred ECCCeEECCCCEEEEEEEecCCCCCCCccC-CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 599999999999999999999998887755 9999999999999864 78988888653 4689999999995
No 5
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.23 E-value=1.6e-11 Score=101.76 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEE
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVV 73 (307)
-||.|+|+||++++|.|+|||+ | .|+||||||++.++++.. |. .++|++..+ ..+.+|+++
T Consensus 54 rP~~G~I~Pg~~~~I~I~~q~~---~---~k~DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 54 RPVYGFVDAKGKSKLDINRLPG---P---PKEDKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp ECSEEEECTTCEEEEEEEECSC---C---SCEEEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred cCCceEECCCCeEEEEEEeCCC---C---CCCCEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 4999999999999999999997 2 689999999999997533 32 568887654 577777764
No 6
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.20 E-value=1.9e-11 Score=99.63 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCccceecCCCeEEEEEEecCCCCCCCCCCcCceeEEEEEeeCCCCCCcccchhhhcccCCCcceeeeeEEE
Q 021780 2 LTGKNYISKEILCKTQFTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 73 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqkeaPPDmqCKDKFLVQSvvVp~g~t~~DIt~dmf~Ke~g~~V~E~KLRVV 73 (307)
-||+|+|+||++++|+|+|||. ..||||||||++.++++. .|. .++|++.... .+.+|+++
T Consensus 46 rP~~G~I~P~~~~~i~I~~q~~------~~~~dKflvq~~~~~~~~--~d~-~~~fk~~~~~--g~~~i~l~ 106 (109)
T 1row_A 46 APVFGFVDPSGSKDVVITRTAG------APKEDKLVVHFASAPADA--TDA-QAAFVAVAPA--GTVTIPMS 106 (109)
T ss_dssp ECSEEEECTTEEEEEEEEECSC------CCEEEEEEEEEEECCTTC--SCH-HHHHTTCCCC--EEEEEEEE
T ss_pred cCCceEECCCCeEEEEEEeCCC------CCCCCEEEEEEEECCCCC--CCH-HHHhhcCCCC--ceEEEEEE
Confidence 4999999999999999999994 258999999999999763 233 6788876543 34455543
No 7
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=85.23 E-value=2.7 Score=32.24 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 272 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~ 272 (307)
++..++..||.|+.-.+.+|..|.+.=-.--++.++|+.+|..|+.+-..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999988889999999999999987543
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.43 E-value=4.5 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=13.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 249 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr 249 (307)
++.|.-.++.+...++..+.+-..-|..|++|-
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333
No 9
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.11 E-value=10 Score=31.32 Aligned_cols=58 Identities=31% Similarity=0.446 Sum_probs=39.2
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Q 021780 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME--------------ARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 209 ~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~E--------------Er~~aiqe~~kLqqEL~lLrr~ 269 (307)
-.+....++.++++-|+..+..+ ..||...|..|+. .+..|.-+++.|+.|++.|++.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777776544433 5566666666655 4556677789999999999864
No 10
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.47 E-value=1.8 Score=34.18 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=21.5
Q ss_pred CCccceecCCCeEEEEEEecCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQR 24 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqk 24 (307)
.|++|.|.||++++|.|+..|..
T Consensus 70 ~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 70 EPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp ESSEEEECTTCEEEEEEEECCSS
T ss_pred ECCcCEECCCCEEEEEEEEEcCC
Confidence 58999999999999999999985
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.30 E-value=11 Score=31.55 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 265 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~l 265 (307)
...||.+|..++.+++++..-+.+|+++.+.--.++.+|+.||..
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555556556666666655555555556555543
No 12
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.21 E-value=8.1 Score=29.50 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 234 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 234 kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
-|..|..-|..|.++.....++++.|+.|.+.|+++
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999875
No 13
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=69.95 E-value=2.6 Score=34.71 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=19.2
Q ss_pred CccceecCCCeEEEEEEecCC
Q 021780 3 TGKNYISKEILCKTQFTMQAQ 23 (307)
Q Consensus 3 PNsGVI~PgsT~~VsVtLQAq 23 (307)
|..|.|.||++|.|.|++..-
T Consensus 81 P~~G~L~Pge~~~I~v~~~v~ 101 (140)
T 3qbt_B 81 PFEGYLEPNETVDISLDVYVS 101 (140)
T ss_dssp SCEEEECTTCEEEEEEEECBC
T ss_pred CcccccCCCCeeEEEEEEEEc
Confidence 899999999999999998854
No 14
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.66 E-value=2.2 Score=32.47 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=20.8
Q ss_pred CCccceecCCCeEEEEEEecCCC
Q 021780 2 LTGKNYISKEILCKTQFTMQAQR 24 (307)
Q Consensus 2 ~PNsGVI~PgsT~~VsVtLQAqk 24 (307)
-|..|.|.||+++.|.|+..|-.
T Consensus 60 ~p~~g~i~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 60 SPKEGIIEPSGVQAIQISFSSII 82 (112)
T ss_dssp ESSEEEECTTBCCEEEEEECCCC
T ss_pred ECCcCEECCCCEEEEEEEEECCC
Confidence 38899999999999999999964
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.72 E-value=12 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
.||.+-.+-+.-...|.|--.+-..||++|||=|
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4444444444555555444444456788888743
No 16
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=66.33 E-value=5.9 Score=36.72 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=31.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+++.++....+-..+|+++.+.+-+|..+||.|++.|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555666666788999999999999999999999984
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.40 E-value=8.9 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred hhHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 219 KDFEELKLK-LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 219 ~d~~elk~k-l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+.|-+.|.+ +..|+.++.+.+..... ...+|+.|++++..|+.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~-------l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSS-------TTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 445555432 33445555444444444 44555555555555543
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.76 E-value=20 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=12.4
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 021780 228 LNVMDSQLREAEHTIRKL 245 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL 245 (307)
++.|+.|...|-.+|..|
T Consensus 8 leqLE~KIq~avdtI~lL 25 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLL 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446677777777777763
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.26 E-value=27 Score=28.16 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=28.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~-------EEr~~aiqe~~kLqqEL~lLr 267 (307)
.++-++..++.++.....-+.+|+ .-|..+-+++.++.+||+-|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444443 345577789999999999775
No 20
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=55.18 E-value=42 Score=26.36 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=33.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHh
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDML-------KHELEVLRR 268 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~-aiqe~~kL-------qqEL~lLrr 268 (307)
++.|..+...+..+.||..+|..+.-|-++ ...+|.++ |+||+-|++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888899999999999999887553 33344433 456666655
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.86 E-value=31 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
|..|-.-|..|.++...-.++.+.|++|...|+.+-
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999888888888999999998888754
No 22
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=52.22 E-value=35 Score=32.36 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=42.0
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+++.+..|..++..++..+..+.+.|..|++.-.+.-.+.++|++.+..|+.+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888888888888899999888777777888888888877764
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.08 E-value=25 Score=27.23 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 227 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 227 kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
++.+.+.++.+...-|.+|+.++..--.+...|++.|.+|..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555566777777788887777777788888888887754
No 24
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.69 E-value=41 Score=26.39 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=20.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 227 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 227 kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
...+.+++|.||++-...| ..+..+|+.+|+.||..
T Consensus 39 ~ni~~eskL~eae~rn~eL-------~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 39 DNQNFASQLREAEARNRDL-------EAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcc
Confidence 3345555666666554444 23466677777777654
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.55 E-value=32 Score=41.69 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=45.3
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.+.+.....+.+|+..+.++.+.+.-|.+|+++-..+++|+++|++|++...+|
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777888888888888999999999999999999999999987765
No 26
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.52 E-value=44 Score=25.99 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLMEARKLA---TREKDMLK 260 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~a---iqe~~kLq 260 (307)
++.|..+...+..+.||..+|..+.-|-++. ..++.+++
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~ 71 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYK 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4677788888999999999999998888776 24454444
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.19 E-value=68 Score=25.97 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
--.+|-.++..+.+.+.+-+.....|..+++..-++.+.|+..++-+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666666666665544
No 28
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.29 E-value=26 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.5
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARK 250 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~ 250 (307)
+.|..+...+..+.||..+|..+.-|-+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788889999999999988755
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.55 E-value=28 Score=33.50 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021780 258 MLKHELEVLR 267 (307)
Q Consensus 258 kLqqEL~lLr 267 (307)
.|+||+..+|
T Consensus 562 ~l~~e~~~~~ 571 (597)
T 3oja_B 562 ELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.43 E-value=20 Score=32.04 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 231 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 231 ~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
++++++.|..+|++|.-|...-.||.+...+|+.-|+++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888776665555555555555555543
No 31
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.26 E-value=45 Score=25.60 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
|..|-.-|..|.++.....++.+.|+++-..|+++
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888777777766666777666666654
No 32
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=44.87 E-value=54 Score=24.33 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
..+..|-+-..-|++|.++-..+-++.++|-|+|+++-..
T Consensus 2 ~WD~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~Q 41 (64)
T 3t97_C 2 AWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQ 41 (64)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778899999999999999999999999988753
No 33
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.91 E-value=81 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=34.9
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 220 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 265 (307)
Q Consensus 220 d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~l 265 (307)
.+..+..++..++.++...++....|.+......++++.|+..|..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555667777888888888888888888888888888877654
No 34
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=43.19 E-value=13 Score=35.02 Aligned_cols=22 Identities=5% Similarity=0.132 Sum_probs=20.3
Q ss_pred CccceecCCCeEEEEEEecCCC
Q 021780 3 TGKNYISKEILCKTQFTMQAQR 24 (307)
Q Consensus 3 PNsGVI~PgsT~~VsVtLQAqk 24 (307)
|..|.|.||++|.|.|++..-.
T Consensus 84 p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 84 PFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp SCEEEECTTCEEEEEEEECBCT
T ss_pred CCccEECCCCEEEEEEEEEECH
Confidence 8899999999999999998765
No 35
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.97 E-value=72 Score=24.40 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=24.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
|..-.+++..-...|..|..+=..--.+.+.||-||+.+|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555556666665555555556667888888765
No 36
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.19 E-value=87 Score=21.71 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 262 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqE 262 (307)
-+++.+.+.+.+..+..+.++..-+.+++++-+.+..+-.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444555555555555555555555555554444444443
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.17 E-value=61 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 232 DSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 232 e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+..+.++...|..++-|+....-|.+.|+.+++-+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778888888888888888888899998888864
No 38
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=40.92 E-value=82 Score=30.15 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=49.9
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 209 ~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
++++....+....+.||+++.++.......+.-+..-.++-+..=++.+.|+=||..|||.
T Consensus 195 ~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 195 GNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 3555667788889999999999888777777777777788888888899999999999984
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.37 E-value=1e+02 Score=27.25 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHH
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTI 242 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I 242 (307)
.+.+.++.++.+...++..+.|+..-|
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.06 E-value=87 Score=22.32 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 231 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 231 ~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
++.++.-..+-=.||.+.-+.|-+|..+|+.|++-|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445566777777888888888888866
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.60 E-value=73 Score=34.52 Aligned_cols=32 Identities=3% Similarity=0.133 Sum_probs=16.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATR 254 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiq 254 (307)
+++.++..++.++.+.+.-+.++..|+...-+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555566666555554433
No 42
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.49 E-value=79 Score=30.29 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=34.6
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
...+.+|+.+...++.++.+++.-+..|.+.-...-+++++|..++.-||
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455666666666667777766666666666666677888888887776
No 43
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.93 E-value=68 Score=27.99 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred chhHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 209 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 209 ~~~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
++.+....+....+-|+++|..+...-.....-+....++-+..=++.+.|+=||-.|++..
T Consensus 86 ~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 86 GNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp CCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34445556777788899999998888777777888888888888899999999999999864
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.32 E-value=1.6e+02 Score=23.61 Aligned_cols=50 Identities=28% Similarity=0.369 Sum_probs=30.0
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 268 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ai-------qe~~kLqqEL~lLrr 268 (307)
.+.+.+|.|+.+--.+-..++.-|..|+..-..++ .+.+-|+.||.+||+
T Consensus 48 ~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 48 EDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555655444444556666666665444332 355778899999986
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.97 E-value=1.2e+02 Score=22.69 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=34.9
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 219 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
.|..+...++..++.++.+++.-..++-+|-.+-.+..+.|+.||+-.
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777788877777777777777777777777777644
No 46
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.90 E-value=1e+02 Score=25.31 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=42.3
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
-+|+++-|=..|-+.+.--++-.+.|.+|-+|.+.+-+|+.+.-+|-+.|.++
T Consensus 69 k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 69 KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888876666667889999999888888888888887777654
No 47
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.84 E-value=73 Score=28.92 Aligned_cols=45 Identities=11% Similarity=0.246 Sum_probs=35.2
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 225 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 225 k~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
-.+++.+++++..-..-+.+.++|+++..-+...-+|-+..+|..
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777888889999999999999999988864
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.04 E-value=60 Score=24.42 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=11.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHH
Q 021780 222 EELKLKLNVMDSQLREAEHTIRKLM 246 (307)
Q Consensus 222 ~elk~kl~~~e~kl~Ea~~~I~kL~ 246 (307)
.+|..++..++.....+..-+..|+
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444
No 49
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.74 E-value=1.4e+02 Score=22.37 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=23.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 221 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 221 ~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
+=|+|.-|...|+|....-.+=..|.+|-|.--.+.++||.|=--||
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 44566555554444444444444445555554445555555544444
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.63 E-value=1.4e+02 Score=22.32 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 225 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 225 k~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
|.|++.|+.....|..-...+...-+.+-+.+.++-+|+.-|.|+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444443333333333333444445555555555544
No 51
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.61 E-value=1.3e+02 Score=22.95 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT--REKDMLKHEL 263 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ai--qe~~kLqqEL 263 (307)
.+++|++++.....++-.++..+..-+.++++|.-.++ +=..+|++|-
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888877777788888888777777776665522 2345666664
No 52
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=34.33 E-value=1.5e+02 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=31.1
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT----REKDMLKHEL 263 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ai----qe~~kLqqEL 263 (307)
+++|++++.....++-.|+.++..-+.++++|.-... +=..+|++|-
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~ 52 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777788888777777776655521 2345566664
No 53
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.08 E-value=1.1e+02 Score=25.91 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=39.2
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
+|+++-|=..|-+.+.--++-.+.|.+|-+|.+.+-+|+.+.-+|-+.|.++
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888776666667788888888887777777777777666554
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.00 E-value=1.1e+02 Score=29.84 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021780 212 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 248 (307)
Q Consensus 212 ~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EE 248 (307)
.++..|-+|+++|+.-+.+++.+.+++..+|..+..-
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888888888888888887777666554
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.09 E-value=1.7e+02 Score=22.72 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 223 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 223 elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
=|+..+.+++.|-.....-..-++..|..--+||++|++|......
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444445555566666777778777665443
No 56
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.67 E-value=1.6e+02 Score=22.48 Aligned_cols=53 Identities=30% Similarity=0.393 Sum_probs=32.1
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 021780 216 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 268 (307)
Q Consensus 216 ~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~ai-------qe~~kLqqEL~lLrr 268 (307)
++-.+++.+|.|+.+=-.+-.+|+.-|..|+..-..++ .+-+-|+.|+.+||+
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666665544444556667777766555443 345678888888885
No 57
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.57 E-value=1.5e+02 Score=29.12 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.8
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021780 211 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 248 (307)
Q Consensus 211 ~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EE 248 (307)
..++..|-+|+++|+..|..+....++|...|..|+.-
T Consensus 30 ~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 30 STYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 34567888999999999999999999999998888764
No 58
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.40 E-value=1.6e+02 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=16.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 227 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 227 kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
|.+.|......|..-...+....+.+-+.+.++-+|+.-|.|
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~k 51 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333444444444444443
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.40 E-value=1.7e+02 Score=29.14 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021780 212 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 245 (307)
Q Consensus 212 ~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL 245 (307)
.+..+|-+|+++|+.++..++.+..+|..+|..|
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~I 126 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMI 126 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455688999999999999998888887665444
No 60
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.06 E-value=53 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 243 RKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 243 ~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
..|+++++..-+|.++|+.|++.|+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788888888999999999999985
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.13 E-value=2.3e+02 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q 021780 254 REKDMLKHELEVLRR 268 (307)
Q Consensus 254 qe~~kLqqEL~lLrr 268 (307)
+|.+-|++|++.+.+
T Consensus 90 kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 90 RELRSLNIEEDIAKE 104 (256)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 62
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=27.92 E-value=99 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 229 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 263 (307)
Q Consensus 229 ~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL 263 (307)
..++..|.||++...|=.+.-+..-+-.+-|+|||
T Consensus 60 Ae~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 60 AELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788887777666555444444445555554
No 63
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.22 E-value=12 Score=31.67 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=0.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 228 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 228 l~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
|++..+||++|+.+-.+|.+.-+++.++...+..||+-+++
T Consensus 11 LqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp ----------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45778889999999999999888888888888888887775
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.95 E-value=2e+02 Score=22.46 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 231 MDSQLREAEHTIRKLMEARKLATREKDMLKHELE 264 (307)
Q Consensus 231 ~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~ 264 (307)
++.++.+++.--.++-+|-.+-.+.++.|..||+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444
No 65
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=26.09 E-value=1.4e+02 Score=26.86 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=35.2
Q ss_pred hhHHHHHHhhhhhhhhhH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 219 KDFEELKLKLNVMDSQLR------EA--EHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 219 ~d~~elk~kl~~~e~kl~------Ea--~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
|.-.+|+.||..++...+ |. +-.+..|+----.++++.+.+.||+++|+.
T Consensus 184 K~eKeLe~kL~~L~~~~e~~~~DeE~~Re~yL~~L~l~~~~s~~~Lesi~~EleiL~~ 241 (243)
T 3qc1_A 184 KQKKEVEHRLSALKSAVESGQADDERVREYHLLHLRRWIAVSLEELESIDQEIKILKE 241 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555677778777765431 22 224555566666799999999999999985
No 66
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.00 E-value=44 Score=23.19 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 021780 285 CMVALIGLVVGYLSHPQN 302 (307)
Q Consensus 285 ~~VaLlGi~lGyll~~~~ 302 (307)
+.+++++++++|++|+-+
T Consensus 22 ~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 344566677788888643
No 67
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=25.38 E-value=2.5e+02 Score=22.04 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 237 EAEHTIRKLMEARKLATREKDMLKHELEVL 266 (307)
Q Consensus 237 Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lL 266 (307)
+=..+|.+.-.-=..+...-++=.+||..-
T Consensus 46 eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 46 SQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333334444444555555433
No 68
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=29.46 E-value=17 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.581 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 021780 283 FVCMVALIGLVVGYLSHPQNR 303 (307)
Q Consensus 283 FV~~VaLlGi~lGyll~~~~~ 303 (307)
++|+--++|..+||++-+.++
T Consensus 4 ~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 455666789999999986654
No 69
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.92 E-value=55 Score=22.78 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCC
Q 021780 286 MVALIGLVVGYLSHPQN 302 (307)
Q Consensus 286 ~VaLlGi~lGyll~~~~ 302 (307)
.+++++.+++|++|+-+
T Consensus 22 ~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33466677778888654
No 70
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.62 E-value=3e+02 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 240 HTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 240 ~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+-|.-|..|-+.-..||+.|.||=++-|+
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555555555555667777777666664
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.43 E-value=1.3e+02 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCc
Q 021780 242 IRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGF 279 (307)
Q Consensus 242 I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~~~~~~~GF 279 (307)
+.+|+++-.+--+||++|+++.+.|.-+--.+..+|-|
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~ 51 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDY 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
No 72
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.35 E-value=60 Score=22.02 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021780 251 LATREKDMLKHELEV 265 (307)
Q Consensus 251 ~aiqe~~kLqqEL~l 265 (307)
.++|||.||..|++.
T Consensus 4 ~~L~ENekLhk~ie~ 18 (37)
T 1t6f_A 4 EALKENEKLHKEIEQ 18 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999888874
No 73
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.26 E-value=1.5e+02 Score=25.25 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
|.+|..+|.-+..+-....++..|++.||+.+|..
T Consensus 34 L~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~n 68 (158)
T 1naf_A 34 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNN 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 67888888777666666689999999999998864
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.12 E-value=2.1e+02 Score=27.62 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=30.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021780 218 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 267 (307)
Q Consensus 218 ~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLr 267 (307)
-..+.+++.+...++.+..+..+.+..++|+-...-.+|++|..++.-||
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555566666666666666666555555566666666666654
No 75
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.00 E-value=2.6e+02 Score=30.31 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 021780 254 REKDMLKHELEVLR 267 (307)
Q Consensus 254 qe~~kLqqEL~lLr 267 (307)
+++..|+.|++.-|
T Consensus 1063 ~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A 1063 EETKQLELDLNDER 1076 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 76
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.88 E-value=1e+02 Score=24.20 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021780 259 LKHELEVL 266 (307)
Q Consensus 259 LqqEL~lL 266 (307)
|++|.+.|
T Consensus 57 Lk~en~~L 64 (83)
T 1wlq_A 57 LRKENKDL 64 (83)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 77
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.18 E-value=3.3e+02 Score=22.04 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=27.2
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 270 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~ 270 (307)
+.=-+.-||-++.++++.+.+...-.....-|-..-.+..+.|+.+++.||-.-
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555544444433222222233344455667777777777543
No 78
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.04 E-value=2.5e+02 Score=27.28 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=39.6
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021780 217 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 268 (307)
Q Consensus 217 ~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr 268 (307)
+++...+|..++..++..+...++.|..|.+--...-...+.|++.+..|..
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888888888887666655666777777776664
No 79
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.04 E-value=1.6e+02 Score=25.72 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 235 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 235 l~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
|.+|..+|.-+..+-....++..|++.||+.+|..
T Consensus 50 L~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~n 84 (186)
T 1oxz_A 50 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNN 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 57888888666555566678899999999988864
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.98 E-value=1.9e+02 Score=28.85 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=33.7
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021780 211 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 249 (307)
Q Consensus 211 ~~~~~~~~~d~~elk~kl~~~e~kl~Ea~~~I~kL~EEr 249 (307)
..++..|-+|+++|+..|..++.+.++|..+|..|+.--
T Consensus 87 ~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~ 125 (461)
T 3ghg_B 87 LQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLW 125 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999998887653
No 81
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.74 E-value=3.5e+02 Score=22.15 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021780 250 KLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 250 ~~aiqe~~kLqqEL~lLrr~ 269 (307)
-.+-.+++.|++++..|.++
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34455666666666666654
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.47 E-value=2.1e+02 Score=22.18 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 236 REAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 236 ~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.+...-+..|..|...--.+.+.|++|+..||.-
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777888888877754
No 83
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.04 E-value=2.1e+02 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cc-cccCCcchhH
Q 021780 236 REAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN-LR-RVQVGFPLLF 283 (307)
Q Consensus 236 ~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~~~-~~-~~~~GFpllF 283 (307)
.+...-|.+|.+|.+..-++.++|++++....-..- .. ..-.|+.+++
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~ 77 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVA 77 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEE
Confidence 466678999999999999999999999876653221 11 0125777654
No 84
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.04 E-value=1.2e+02 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 021780 240 HTIRKLMEA---RKLATREKDMLKHELEVLR 267 (307)
Q Consensus 240 ~~I~kL~EE---r~~aiqe~~kLqqEL~lLr 267 (307)
.+-.+|.+| |..|-+++.++.+||+-|.
T Consensus 50 ~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 50 RLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp THHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 5577788999999999775
No 85
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.01 E-value=24 Score=35.40 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=4.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021780 230 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 269 (307)
Q Consensus 230 ~~e~kl~Ea~~~I~kL~EEr~~aiqe~~kLqqEL~lLrr~ 269 (307)
.|+.++.|+...|.+|.+|+...-.|..+||+|+...|+.
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ---------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888888888888888776653
Done!