Query 021781
Match_columns 307
No_of_seqs 268 out of 1427
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 9.6E-55 3.3E-59 372.2 12.4 135 62-207 8-142 (143)
2 2ecm_A Ring finger and CHY zin 99.4 4.5E-13 1.6E-17 94.0 5.0 52 204-256 3-54 (55)
3 2ecl_A Ring-box protein 2; RNF 99.3 9.7E-13 3.3E-17 100.9 5.1 52 205-257 25-76 (81)
4 2ep4_A Ring finger protein 24; 99.3 3.8E-12 1.3E-16 94.7 5.4 56 201-258 10-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.3 3.2E-12 1.1E-16 89.8 4.6 49 206-256 5-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 92.8 4.9 53 203-257 11-63 (69)
7 1x4j_A Ring finger protein 38; 99.2 3.5E-12 1.2E-16 95.4 3.7 52 204-257 21-72 (75)
8 1v87_A Deltex protein 2; ring- 99.2 7.7E-12 2.6E-16 100.3 4.9 54 204-257 23-94 (114)
9 2l0b_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 97.3 4.5 52 204-257 38-89 (91)
10 2ect_A Ring finger protein 126 99.2 1.3E-11 4.5E-16 92.6 4.6 52 204-257 13-64 (78)
11 2k2d_A Ring finger and CHY zin 99.2 4.9E-12 1.7E-16 98.3 2.0 57 248-304 1-70 (79)
12 1g25_A CDK-activating kinase a 99.2 2.1E-11 7.2E-16 88.8 5.0 52 206-257 3-55 (65)
13 2ea6_A Ring finger protein 4; 99.2 1.6E-11 5.4E-16 89.3 4.2 52 204-256 13-67 (69)
14 3ng2_A RNF4, snurf, ring finge 99.2 1.4E-11 4.7E-16 90.5 3.9 53 204-257 8-63 (71)
15 2xeu_A Ring finger protein 4; 99.1 2.5E-11 8.6E-16 87.0 4.0 51 206-257 3-56 (64)
16 2ct2_A Tripartite motif protei 99.1 6.1E-11 2.1E-15 90.2 5.3 53 205-257 14-68 (88)
17 1chc_A Equine herpes virus-1 r 99.1 5.7E-11 1.9E-15 86.7 4.2 49 205-257 4-52 (68)
18 3dpl_R Ring-box protein 1; ubi 99.1 9.7E-11 3.3E-15 95.0 5.4 34 222-256 67-100 (106)
19 2d8t_A Dactylidin, ring finger 99.1 8.9E-11 3E-15 87.0 4.3 49 204-257 13-61 (71)
20 1e4u_A Transcriptional repress 99.0 2.2E-11 7.5E-16 93.6 0.4 58 205-264 10-69 (78)
21 2csy_A Zinc finger protein 183 99.0 1.1E-10 3.9E-15 88.4 4.3 48 204-256 13-60 (81)
22 3hct_A TNF receptor-associated 99.0 3.5E-11 1.2E-15 97.7 1.4 88 205-296 17-107 (118)
23 1rmd_A RAG1; V(D)J recombinati 99.0 1.8E-11 6E-16 98.8 -0.5 87 206-296 23-113 (116)
24 2ysl_A Tripartite motif-contai 99.0 1.9E-10 6.5E-15 84.9 5.2 49 204-256 18-68 (73)
25 1t1h_A Gspef-atpub14, armadill 99.0 2.3E-10 7.8E-15 85.8 5.3 49 204-256 6-54 (78)
26 2ecy_A TNF receptor-associated 99.0 1.5E-10 5.3E-15 84.4 3.6 49 205-257 14-62 (66)
27 2djb_A Polycomb group ring fin 99.0 2E-10 6.7E-15 85.3 4.2 49 205-257 14-62 (72)
28 2ecn_A Ring finger protein 141 99.0 8.3E-11 2.8E-15 86.5 1.5 48 204-257 13-60 (70)
29 4ayc_A E3 ubiquitin-protein li 99.0 2.1E-10 7.1E-15 95.7 3.9 47 206-257 53-99 (138)
30 2yur_A Retinoblastoma-binding 99.0 1.6E-10 5.4E-15 86.5 2.8 49 205-257 14-64 (74)
31 4ap4_A E3 ubiquitin ligase RNF 99.0 2.8E-10 9.6E-15 91.9 4.1 52 205-257 6-60 (133)
32 3lrq_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 89.4 3.8 49 206-257 22-70 (100)
33 4ap4_A E3 ubiquitin ligase RNF 98.9 8.4E-11 2.9E-15 95.0 -0.0 109 120-257 6-125 (133)
34 3fl2_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 91.1 4.6 48 206-257 52-99 (124)
35 2ysj_A Tripartite motif-contai 98.9 7E-10 2.4E-14 80.0 4.5 44 204-251 18-63 (63)
36 2ecw_A Tripartite motif-contai 98.9 1.2E-09 4.2E-14 81.9 4.9 49 205-257 18-71 (85)
37 2egp_A Tripartite motif-contai 98.9 3E-10 1E-14 84.9 1.2 49 205-257 11-65 (79)
38 2ecj_A Tripartite motif-contai 98.9 1E-09 3.6E-14 77.3 3.9 43 205-251 14-58 (58)
39 3ztg_A E3 ubiquitin-protein li 98.9 1.2E-09 4.1E-14 84.3 4.1 48 205-256 12-61 (92)
40 4a0k_B E3 ubiquitin-protein li 98.9 3E-10 1E-14 94.0 0.5 50 206-256 48-111 (117)
41 2y43_A E3 ubiquitin-protein li 98.9 1.5E-09 5.1E-14 85.1 4.3 48 206-257 22-69 (99)
42 2ecv_A Tripartite motif-contai 98.8 1.4E-09 5E-14 81.5 3.9 49 205-257 18-71 (85)
43 2d8s_A Cellular modulator of i 98.8 1.6E-09 5.4E-14 83.8 4.1 53 203-257 12-70 (80)
44 2ckl_A Polycomb group ring fin 98.8 2E-09 6.7E-14 85.8 4.7 48 206-257 15-62 (108)
45 3l11_A E3 ubiquitin-protein li 98.8 6.6E-10 2.3E-14 89.3 1.8 48 206-257 15-62 (115)
46 2ckl_B Ubiquitin ligase protei 98.8 1.9E-09 6.6E-14 91.9 4.6 48 206-256 54-101 (165)
47 1z6u_A NP95-like ring finger p 98.8 3.3E-09 1.1E-13 90.3 4.6 48 206-257 78-125 (150)
48 3knv_A TNF receptor-associated 98.8 5.2E-10 1.8E-14 94.4 -0.8 90 205-298 30-132 (141)
49 1jm7_A BRCA1, breast cancer ty 98.8 3.4E-09 1.2E-13 84.0 3.5 47 206-256 21-69 (112)
50 3hcs_A TNF receptor-associated 98.7 1.2E-09 4.3E-14 93.4 0.2 84 205-292 17-103 (170)
51 2vje_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 73.8 3.6 50 203-257 5-57 (64)
52 4ic3_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 75.8 2.2 43 206-257 24-67 (74)
53 1bor_A Transcription factor PM 98.6 1.2E-08 4E-13 72.8 1.0 45 204-256 4-48 (56)
54 2kr4_A Ubiquitin conjugation f 98.6 4.6E-08 1.6E-12 75.6 4.3 48 205-257 13-60 (85)
55 2c2l_A CHIP, carboxy terminus 98.6 9.5E-08 3.2E-12 85.8 7.0 52 202-257 204-255 (281)
56 1jm7_B BARD1, BRCA1-associated 98.5 1.4E-08 4.7E-13 82.2 1.3 44 206-256 22-66 (117)
57 2vje_B MDM4 protein; proto-onc 98.5 3.8E-08 1.3E-12 72.0 3.1 49 204-257 5-56 (63)
58 2kre_A Ubiquitin conjugation f 98.5 6.2E-08 2.1E-12 77.4 4.3 49 204-257 27-75 (100)
59 2ct0_A Non-SMC element 1 homol 98.5 6.9E-08 2.4E-12 73.9 3.7 49 206-257 15-64 (74)
60 1wgm_A Ubiquitin conjugation f 98.5 1E-07 3.4E-12 75.9 4.6 48 205-257 21-69 (98)
61 2y1n_A E3 ubiquitin-protein li 98.4 1.5E-07 5E-12 92.0 5.0 49 205-257 331-379 (389)
62 2yu4_A E3 SUMO-protein ligase 98.4 2E-07 6.9E-12 73.1 4.2 46 205-254 6-59 (94)
63 2ecg_A Baculoviral IAP repeat- 98.3 1.7E-07 5.8E-12 70.3 2.8 43 206-257 25-68 (75)
64 1wim_A KIAA0161 protein; ring 98.3 6.6E-07 2.2E-11 69.6 5.7 52 205-257 4-66 (94)
65 2ea5_A Cell growth regulator w 98.3 5.3E-07 1.8E-11 67.1 4.2 45 204-257 13-58 (68)
66 2yho_A E3 ubiquitin-protein li 98.2 3.1E-07 1.1E-11 70.1 1.9 43 206-257 18-61 (79)
67 2f42_A STIP1 homology and U-bo 98.2 1.7E-06 5.7E-11 76.3 6.3 50 204-257 104-153 (179)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.4E-06 4.8E-11 63.7 2.8 51 202-256 2-58 (60)
69 3htk_C E3 SUMO-protein ligase 98.0 2.6E-06 8.8E-11 79.5 3.2 50 204-256 179-231 (267)
70 3k1l_B Fancl; UBC, ring, RWD, 97.9 2.2E-06 7.4E-11 83.0 0.9 53 204-256 306-372 (381)
71 3t6p_A Baculoviral IAP repeat- 97.8 4.2E-06 1.4E-10 80.4 1.8 43 206-257 295-338 (345)
72 2bay_A PRE-mRNA splicing facto 97.6 3.4E-05 1.2E-09 56.3 3.1 48 205-257 2-50 (61)
73 3vk6_A E3 ubiquitin-protein li 97.5 8.3E-05 2.8E-09 60.1 4.1 48 208-258 3-50 (101)
74 3nw0_A Non-structural maintena 96.1 0.004 1.4E-07 56.7 4.1 49 206-257 180-229 (238)
75 2jrp_A Putative cytoplasmic pr 90.8 0.086 3E-06 40.9 1.6 35 121-155 18-60 (81)
76 2jun_A Midline-1; B-BOX, TRIM, 90.1 0.12 4.2E-06 39.8 2.0 34 206-241 3-38 (101)
77 2lbm_A Transcriptional regulat 89.0 0.67 2.3E-05 39.2 5.8 49 201-254 58-117 (142)
78 2jne_A Hypothetical protein YF 88.4 0.2 7E-06 40.2 2.1 33 122-154 49-89 (101)
79 3v43_A Histone acetyltransfera 87.7 0.17 5.8E-06 40.6 1.3 75 175-253 21-111 (112)
80 2ysm_A Myeloid/lymphoid or mix 86.9 0.25 8.5E-06 39.2 1.8 82 168-253 9-103 (111)
81 2ko5_A Ring finger protein Z; 85.1 0.24 8.3E-06 39.6 0.9 45 206-257 28-73 (99)
82 2kwj_A Zinc finger protein DPF 82.6 0.11 3.7E-06 41.9 -2.2 82 167-254 2-108 (114)
83 2ysm_A Myeloid/lymphoid or mix 81.1 3 0.0001 32.8 5.8 70 120-193 6-82 (111)
84 2jne_A Hypothetical protein YF 75.2 1.8 6.1E-05 34.7 2.8 65 115-193 26-94 (101)
85 1weo_A Cellulose synthase, cat 74.9 5 0.00017 31.7 5.2 56 201-256 11-69 (93)
86 3ql9_A Transcriptional regulat 72.7 4.4 0.00015 33.7 4.7 51 200-254 51-111 (129)
87 2lri_C Autoimmune regulator; Z 72.3 2.8 9.7E-05 30.7 3.1 45 206-254 12-59 (66)
88 4bbq_A Lysine-specific demethy 71.9 0.7 2.4E-05 36.7 -0.3 29 225-253 78-113 (117)
89 2e6s_A E3 ubiquitin-protein li 60.7 4.8 0.00016 30.3 2.4 64 177-253 7-76 (77)
90 1we9_A PHD finger family prote 56.6 2 6.9E-05 30.6 -0.3 50 205-254 5-58 (64)
91 2jrp_A Putative cytoplasmic pr 56.0 7 0.00024 30.1 2.6 23 122-144 3-28 (81)
92 3j20_Y 30S ribosomal protein S 55.2 5.5 0.00019 27.7 1.8 12 131-142 16-27 (50)
93 2k16_A Transcription initiatio 53.5 2.9 0.0001 30.7 0.1 47 206-255 18-69 (75)
94 1f62_A Transcription factor WS 53.1 9.4 0.00032 25.8 2.7 45 208-254 2-50 (51)
95 2dkt_A Ring finger and CHY zin 51.5 4.4 0.00015 34.4 0.9 29 147-175 99-127 (143)
96 2l5u_A Chromodomain-helicase-D 51.4 9.4 0.00032 27.1 2.6 45 204-253 9-57 (61)
97 3u5c_f 40S ribosomal protein S 51.3 7.2 0.00025 32.8 2.2 25 130-154 114-146 (152)
98 2pv0_B DNA (cytosine-5)-methyl 47.3 15 0.00052 35.7 4.1 71 181-255 68-149 (386)
99 2k4x_A 30S ribosomal protein S 43.7 15 0.0005 26.0 2.5 9 134-142 18-26 (55)
100 2fiy_A Protein FDHE homolog; F 43.1 16 0.00055 34.2 3.5 25 119-143 206-231 (309)
101 2egq_A FHL1 protein; LIM domai 43.0 17 0.00058 25.8 2.9 42 205-257 14-58 (77)
102 3lqh_A Histone-lysine N-methyl 43.0 9.1 0.00031 33.3 1.6 50 207-257 3-66 (183)
103 1g47_A Pinch protein; LIM doma 41.2 17 0.0006 25.7 2.7 43 204-257 9-51 (77)
104 1x63_A Skeletal muscle LIM-pro 40.0 21 0.00072 25.7 3.0 42 205-257 14-55 (82)
105 2dmd_A Zinc finger protein 64, 39.6 23 0.0008 25.1 3.2 15 178-192 62-76 (96)
106 3u5n_A E3 ubiquitin-protein li 38.9 8.6 0.00029 33.4 0.8 46 204-255 5-55 (207)
107 2ayj_A 50S ribosomal protein L 38.6 34 0.0012 24.6 3.8 27 117-143 15-42 (56)
108 1x61_A Thyroid receptor intera 38.5 17 0.00059 25.5 2.3 40 206-256 5-44 (72)
109 1ryq_A DNA-directed RNA polyme 38.5 17 0.00057 27.2 2.2 24 118-142 8-31 (69)
110 4esj_A Type-2 restriction enzy 38.4 13 0.00046 34.1 2.0 19 135-153 35-63 (257)
111 1mm2_A MI2-beta; PHD, zinc fin 38.1 8.9 0.0003 27.2 0.7 48 204-255 7-57 (61)
112 1x4k_A Skeletal muscle LIM-pro 37.2 24 0.00081 24.6 2.8 41 206-257 5-45 (72)
113 1wil_A KIAA1045 protein; ring 36.8 27 0.00092 27.3 3.2 32 204-240 13-47 (89)
114 3i2d_A E3 SUMO-protein ligase 35.7 33 0.0011 33.2 4.4 48 206-256 249-299 (371)
115 3mjh_B Early endosome antigen 35.6 16 0.00053 23.7 1.4 14 245-258 5-18 (34)
116 1x68_A FHL5 protein; four-and- 35.2 27 0.00093 24.8 2.9 41 205-256 4-46 (76)
117 1wyh_A SLIM 2, skeletal muscle 34.7 18 0.00062 25.3 1.9 41 206-257 5-45 (72)
118 2kgg_A Histone demethylase jar 34.1 12 0.00041 25.6 0.8 44 208-252 4-52 (52)
119 2kdx_A HYPA, hydrogenase/ureas 34.0 15 0.0005 29.3 1.4 13 132-144 71-83 (119)
120 4fo9_A E3 SUMO-protein ligase 33.9 37 0.0013 32.7 4.4 48 206-256 215-265 (360)
121 2ku3_A Bromodomain-containing 33.6 14 0.00049 27.2 1.2 51 202-253 12-65 (71)
122 3shb_A E3 ubiquitin-protein li 33.4 62 0.0021 24.1 4.8 24 169-192 29-53 (77)
123 1zfo_A LAsp-1; LIM domain, zin 32.9 13 0.00045 22.9 0.7 30 205-237 2-31 (31)
124 3o36_A Transcription intermedi 32.7 12 0.00041 31.8 0.7 46 206-255 4-52 (184)
125 4ayb_P DNA-directed RNA polyme 32.7 23 0.00078 24.7 2.0 27 145-171 2-31 (48)
126 3a1b_A DNA (cytosine-5)-methyl 32.4 22 0.00075 30.5 2.3 64 186-254 59-134 (159)
127 3lpe_B DNA-directed RNA polyme 32.2 21 0.00071 25.8 1.8 19 123-142 3-21 (59)
128 2cs3_A Protein C14ORF4, MY039 31.9 25 0.00086 27.3 2.3 36 204-243 13-52 (93)
129 3f6q_B LIM and senescent cell 31.4 33 0.0011 23.6 2.8 42 205-257 10-51 (72)
130 1iml_A CRIP, cysteine rich int 30.7 20 0.00067 25.5 1.5 38 208-257 2-39 (76)
131 1twf_L ABC10-alpha, DNA-direct 30.0 26 0.00088 26.0 2.0 8 164-171 46-53 (70)
132 3lqh_A Histone-lysine N-methyl 29.5 29 0.001 30.1 2.7 55 148-214 4-62 (183)
133 2cup_A Skeletal muscle LIM-pro 29.3 35 0.0012 25.4 2.8 25 229-256 53-77 (101)
134 2drp_A Protein (tramtrack DNA- 29.2 9.8 0.00034 25.4 -0.4 9 162-170 39-47 (66)
135 1znf_A 31ST zinc finger from X 29.2 38 0.0013 17.7 2.3 14 246-259 2-15 (27)
136 1vd4_A Transcription initiatio 28.4 31 0.001 23.2 2.1 8 137-144 17-24 (62)
137 1wev_A Riken cDNA 1110020M19; 27.7 5.7 0.0002 30.4 -2.0 51 206-257 16-75 (88)
138 1wep_A PHF8; structural genomi 27.7 43 0.0015 24.7 3.0 49 207-256 13-65 (79)
139 3v43_A Histone acetyltransfera 26.8 58 0.002 25.5 3.8 26 227-252 31-62 (112)
140 2lv9_A Histone-lysine N-methyl 26.6 76 0.0026 24.4 4.4 47 207-257 29-79 (98)
141 2yql_A PHD finger protein 21A; 26.4 7 0.00024 27.2 -1.6 45 205-253 8-55 (56)
142 1x4l_A Skeletal muscle LIM-pro 26.3 33 0.0011 24.0 2.1 41 206-257 5-47 (72)
143 3asl_A E3 ubiquitin-protein li 26.0 1.1E+02 0.0038 22.1 4.9 35 157-192 10-45 (70)
144 2cu8_A Cysteine-rich protein 2 26.0 34 0.0012 24.2 2.1 41 205-257 8-48 (76)
145 2l43_A N-teminal domain from h 25.9 24 0.00081 26.9 1.3 50 205-255 24-76 (88)
146 1qxf_A GR2, 30S ribosomal prot 25.8 30 0.001 25.6 1.8 36 120-155 6-47 (66)
147 1klr_A Zinc finger Y-chromosom 25.5 49 0.0017 17.5 2.3 16 245-260 2-17 (30)
148 1ard_A Yeast transcription fac 25.4 47 0.0016 17.5 2.3 15 245-259 2-16 (29)
149 1qyp_A RNA polymerase II; tran 25.4 33 0.0011 23.7 1.9 13 136-148 17-29 (57)
150 2jvx_A NF-kappa-B essential mo 25.3 31 0.0011 21.4 1.5 15 245-259 3-17 (28)
151 1vq8_Z 50S ribosomal protein L 25.2 23 0.00078 27.1 1.0 35 131-176 24-58 (83)
152 2ehe_A Four and A half LIM dom 25.0 39 0.0013 24.2 2.3 41 206-257 15-55 (82)
153 6rxn_A Rubredoxin; electron tr 24.7 34 0.0012 23.4 1.7 28 144-171 2-38 (46)
154 2m0e_A Zinc finger and BTB dom 24.4 51 0.0017 17.2 2.2 15 245-259 2-16 (29)
155 2v3b_B Rubredoxin 2, rubredoxi 24.3 43 0.0015 23.6 2.3 12 144-155 1-12 (55)
156 2xzm_9 RPS31E; ribosome, trans 24.2 30 0.001 30.3 1.7 22 134-155 113-140 (189)
157 3m62_A Ubiquitin conjugation f 23.4 72 0.0025 34.5 4.8 51 202-257 887-938 (968)
158 2dar_A PDZ and LIM domain prot 23.2 36 0.0012 25.1 1.8 41 204-257 23-63 (90)
159 3p8b_A DNA-directed RNA polyme 23.0 34 0.0012 26.3 1.6 22 121-143 23-44 (81)
160 2csh_A Zinc finger protein 297 22.9 52 0.0018 24.0 2.7 14 178-191 63-76 (110)
161 1fp0_A KAP-1 corepressor; PHD 22.6 32 0.0011 26.6 1.5 47 204-254 23-72 (88)
162 2eps_A POZ-, at HOOK-, and zin 22.6 16 0.00053 23.8 -0.3 9 162-170 40-48 (54)
163 2d8x_A Protein pinch; LIM doma 22.5 52 0.0018 22.8 2.5 39 206-257 5-43 (70)
164 1x3h_A Leupaxin; paxillin fami 22.2 56 0.0019 23.2 2.7 39 206-257 15-53 (80)
165 2cur_A Skeletal muscle LIM-pro 22.2 53 0.0018 22.6 2.5 38 206-256 5-42 (69)
166 1p7a_A BF3, BKLF, kruppel-like 22.1 54 0.0018 18.7 2.2 15 245-259 11-25 (37)
167 2elr_A Zinc finger protein 406 21.6 59 0.002 18.3 2.3 16 245-260 9-24 (36)
168 2puy_A PHD finger protein 21A; 21.5 16 0.00054 25.6 -0.5 45 205-253 4-51 (60)
169 3h0g_L DNA-directed RNA polyme 21.4 46 0.0016 24.3 2.0 11 161-171 36-46 (63)
170 2dj7_A Actin-binding LIM prote 21.1 60 0.002 23.5 2.6 40 205-256 14-53 (80)
171 1x6a_A LIMK-2, LIM domain kina 21.1 45 0.0015 23.8 1.9 38 206-256 15-52 (81)
172 3u6p_A Formamidopyrimidine-DNA 21.0 41 0.0014 30.7 2.0 19 135-153 246-272 (273)
173 2cuq_A Four and A half LIM dom 20.8 56 0.0019 23.1 2.4 38 206-256 15-52 (80)
174 1ptq_A Protein kinase C delta 20.8 51 0.0017 21.7 2.0 10 161-170 26-35 (50)
175 2xzf_A Formamidopyrimidine-DNA 20.6 42 0.0014 30.5 2.0 19 135-153 243-269 (271)
176 2vpb_A Hpygo1, pygopus homolog 20.5 65 0.0022 23.1 2.7 33 205-238 7-41 (65)
177 2yqq_A Zinc finger HIT domain- 20.4 47 0.0016 23.7 1.8 16 137-153 15-30 (56)
178 1v6g_A Actin binding LIM prote 20.3 58 0.002 23.2 2.4 39 206-257 15-53 (81)
179 3uk3_C Zinc finger protein 217 20.2 66 0.0023 20.3 2.5 15 245-259 32-46 (57)
180 3j20_W 30S ribosomal protein S 20.2 56 0.0019 23.9 2.2 39 116-154 10-54 (63)
181 1k3x_A Endonuclease VIII; hydr 20.2 44 0.0015 30.2 2.0 19 135-153 235-261 (262)
182 1k82_A Formamidopyrimidine-DNA 20.1 44 0.0015 30.3 2.0 19 135-153 241-267 (268)
183 1rim_A E6APC2 peptide; E6-bind 20.0 73 0.0025 18.1 2.4 16 245-260 2-17 (33)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=9.6e-55 Score=372.22 Aligned_cols=135 Identities=41% Similarity=1.022 Sum_probs=128.2
Q ss_pred hhcccCCCccCcccccccceeEcCCCCCeecCchhHhhhhcCCCccccCCCCCCcccCceeeeCCCCccccccccCcCCC
Q 021781 62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCG 141 (307)
Q Consensus 62 ~~~~~~~~~~GC~HY~R~c~i~~pCC~k~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~C~~Cg 141 (307)
..+|++.+++||+||+|+|+|+||||++|||||+||||+. +|+++|+.+++|+||.|+++|++++.|++||
T Consensus 8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg 78 (143)
T 2dkt_A 8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 78 (143)
T ss_dssp CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred cccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCC
Confidence 4457788899999999999999999999999999999964 7999999999999999999999999999999
Q ss_pred CccceEecCccccccCCCCCCeecCCCCCcccccCCccceecCCccceeeccccccccccCCCCCC
Q 021781 142 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 207 (307)
Q Consensus 142 ~~fa~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~e~ffHC~~C~~C~s~~l~~~H~CiE~~~~~ 207 (307)
+.||+|||+|||||| ++|+||||++|||||+|+++|||||++||+|||++|+++|+|+|++++.
T Consensus 79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999997 4699999999999999999999999999999999999999999998754
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=4.5e-13 Score=93.99 Aligned_cols=52 Identities=38% Similarity=0.913 Sum_probs=45.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
..+..||||++.+.++...++.++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4568899999987676677889999999999999999986 489999998864
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.7e-13 Score=100.90 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=40.2
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
++..||||++++......+++++|||.||.+||.+|++. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356788888875544334444569999999999999985 5799999998753
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.8e-12 Score=94.70 Aligned_cols=56 Identities=34% Similarity=0.776 Sum_probs=46.4
Q ss_pred cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccch
Q 021781 201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (307)
Q Consensus 201 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm 258 (307)
.+...+..|+||++. +.....+++|+|||.||..|+.+|++. +.+||+||+.+..+
T Consensus 10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 344567899999997 445566788899999999999999986 57999999998754
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.27 E-value=3.2e-12 Score=89.76 Aligned_cols=49 Identities=31% Similarity=0.739 Sum_probs=40.8
Q ss_pred CCCCcccccccccCCceeEEcC-CCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
+..|+||++.+. ..+.++.++ |||.||..|+.+|++. +.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCcccc-CCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 568999999754 445567776 9999999999999985 689999998763
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=5e-12 Score=92.81 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 203 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 203 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...+..|+||++. +.....++.++|||.||..|+.+|+.. +.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3457789999996 444567888999999999999999986 5789999998763
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=95.42 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+||++. +.....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 346789999997 445667888999999999999999985 5899999998864
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=7.7e-12 Score=100.28 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccCC--------------ceeEEcCCCCccchHHHHHHhh----cCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~--------------~~v~~LpCGH~fH~~Ci~~wl~----~~~~~CPlCrks~~d 257 (307)
..+..||||++.|.... ..+++++|||.||..||.+|+. ..+.+||+||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34678999999864321 2345789999999999999995 235789999998865
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.20 E-value=8.6e-12 Score=97.29 Aligned_cols=52 Identities=27% Similarity=0.630 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
..+..|+||++.+ .....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEY-VKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEEC-CTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhh-cCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3467899999964 44567788999999999999999985 6899999998753
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.3e-11 Score=92.60 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+||++. +.....++.|+|||.||..||.+|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 346799999996 445567788999999999999999985 5899999998864
No 11
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=4.9e-12 Score=98.35 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=19.8
Q ss_pred CCCCCcCccchhHHHHhhHHHHHcCCCChhhcCceEEEEE-------------eeecCCccccccccccc
Q 021781 248 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVSFSY-------------VSLWSDGCLSVDKILTA 304 (307)
Q Consensus 248 CPlCrks~~dm~~~~~~lD~eia~~pmP~ey~n~~v~Is~-------------~r~~~~~C~s~~~~~~~ 304 (307)
||+|+|++.||+.+|+.||++|+++|||++|++++|+|.+ +.+.++.|.||.+.+++
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAG 70 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecC
Confidence 8999999999999999999999999999999999999988 33346779999997764
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=2.1e-11 Score=88.77 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=42.5
Q ss_pred CCCCccccc-ccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE-~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++ .+.+.....++++|||+||..|+.+|+.....+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6555444456789999999999999977666789999998863
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=89.30 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
.....||||++.+.+. ...++.++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975542 234588999999999999999986 689999999875
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=1.4e-11 Score=90.46 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
..+..||||++.+.+. ...++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999976442 244588999999999999999985 5799999998864
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=86.96 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=42.1
Q ss_pred CCCCcccccccccC---CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+. .+.++.++|||.||.+|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999975442 244578899999999999999986 6899999998864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.1e-11 Score=90.23 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC--CCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~~CPlCrks~~d 257 (307)
....||||++.+.++....+.++|||.||..|+.+|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3578999999765544447888999999999999999853 4789999998763
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=5.7e-11 Score=86.73 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=41.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++.+. .+++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 3578999999743 24688999999999999999985 5899999998864
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.08 E-value=9.7e-11 Score=95.04 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.3
Q ss_pred eeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 222 ~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
.++.++|||.||..||.+||.. +.+||+||+++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4678899999999999999985 689999999864
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.9e-11 Score=86.98 Aligned_cols=49 Identities=20% Similarity=0.542 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....||||++.+.+ .+.++|||.||..|+.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 346789999996432 467899999999999999985 5899999998864
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=2.2e-11 Score=93.62 Aligned_cols=58 Identities=28% Similarity=0.600 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCceeEEc--CCCCccchHHHHHHhhcCCCCCCCCCcCccchhHHHHh
Q 021781 205 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK 264 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm~~~~~~ 264 (307)
.+..||||+|.+.. .++.++ +|||.|++.|+..++....+.||+||+++......|+.
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 46789999997532 223444 49999999999998765678999999999875444443
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=88.36 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=40.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
.....||||++.+.+ .++++|||.||..|+.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 346689999996432 456899999999999999985 689999999986
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.04 E-value=3.5e-11 Score=97.74 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=64.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccchhH-HHHhhHHHHHcCCCCh--hhcCc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSK-VWEKYDREIAATPMPE--AYLNK 281 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm~~-~~~~lD~eia~~pmP~--ey~n~ 281 (307)
.+..||||++.+.+ .+.++|||+||..|+.+|+.....+||+||+++..... ....+.+++...++.. ...++
T Consensus 17 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~ 92 (118)
T 3hct_A 17 SKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLH 92 (118)
T ss_dssp GGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCC
T ss_pred CCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCCCC
Confidence 35689999996432 36689999999999999998655699999999875321 1234566777766654 45677
Q ss_pred eEEEEEeeecCCccc
Q 021781 282 KVSFSYVSLWSDGCL 296 (307)
Q Consensus 282 ~v~Is~~r~~~~~C~ 296 (307)
.+.+..+.-|..+|.
T Consensus 93 ~~~~~~l~~H~~~c~ 107 (118)
T 3hct_A 93 KMELRHLEDHQAHCE 107 (118)
T ss_dssp EEEGGGSGGGTSSSC
T ss_pred EEeeHHHHHHHHHch
Confidence 777777887877775
No 23
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=1.8e-11 Score=98.77 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccchh--HHHHhhHHHHHcCCCChh--hcCc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS--KVWEKYDREIAATPMPEA--YLNK 281 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm~--~~~~~lD~eia~~pmP~e--y~n~ 281 (307)
+..||||++.+.+ .+.++|||.||..|+.+|+.....+||+||+.+.... ...+.+.+.+...++... ..++
T Consensus 23 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~ 98 (116)
T 1rmd_A 23 SISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNE 98 (116)
T ss_dssp HTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCC
T ss_pred CCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 5689999996432 4568999999999999999865678999999987422 223445566665555333 3556
Q ss_pred eEEEEEeeecCCccc
Q 021781 282 KVSFSYVSLWSDGCL 296 (307)
Q Consensus 282 ~v~Is~~r~~~~~C~ 296 (307)
.+.+..++-|..+|.
T Consensus 99 ~~~~~~~~~H~~~C~ 113 (116)
T 1rmd_A 99 EVSLEKYNHHVSSHK 113 (116)
T ss_dssp EEEHHHHHHHHHTSC
T ss_pred hhhHhHHHHHHHHhh
Confidence 555555666665554
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=84.88 Aligned_cols=49 Identities=29% Similarity=0.772 Sum_probs=40.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc--CCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPlCrks~~ 256 (307)
.....||||++.+. ..+.++|||.||..|+..|+.. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34678999999643 2566799999999999999963 4578999999875
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=2.3e-10 Score=85.77 Aligned_cols=49 Identities=14% Similarity=0.442 Sum_probs=41.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
..+..||||++.+.+ .+.++|||+||+.|+.+|+..++.+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 346799999995432 4667999999999999999865789999999986
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=84.40 Aligned_cols=49 Identities=20% Similarity=0.503 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++.+.+ .+.++|||.||..|+.+|+.....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35789999996432 34489999999999999996556889999998864
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=85.32 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++.+.+ ++.+++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 46789999996443 3444599999999999999985 6899999998864
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=8.3e-11 Score=86.47 Aligned_cols=48 Identities=23% Similarity=0.764 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....||||++.+.+ +.++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 346789999996432 7789999999999999998 47899999998864
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.98 E-value=2.1e-10 Score=95.66 Aligned_cols=47 Identities=32% Similarity=0.870 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ ++++||||+||..|+..|+.. +.+||+||+++..
T Consensus 53 ~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC----ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 3479999996533 567899999999999999985 6889999999874
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.98 E-value=1.6e-10 Score=86.54 Aligned_cols=49 Identities=20% Similarity=0.655 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHhhcC-CCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~-~~~CPlCrks~~d 257 (307)
.+..||||++.+.+ .+.++ |||.||..||..|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 35789999996433 46688 99999999999999753 3689999998654
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2.8e-10 Score=91.87 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=42.8
Q ss_pred CCCCCcccccccccC---CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++.+.+. .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 467899999975442 344588999999999999999985 5799999999863
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=3.7e-10 Score=89.41 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ ++..++|||.||..||.+|+......||+||.++..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4689999996432 344499999999999999998655799999999863
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=8.4e-11 Score=94.96 Aligned_cols=109 Identities=25% Similarity=0.617 Sum_probs=68.8
Q ss_pred ceeeeCCCCcccccc------ccCcCCCCccceEecCccc--cccCCCCCCeecCCCCCcccccCCccceecCCccceee
Q 021781 120 NQVICSLCGTEQKVQ------QVCVNCGVCMGEYFCESCK--LFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 191 (307)
Q Consensus 120 ~~v~C~~C~~eQ~v~------~~C~~Cg~~fa~YfC~~Ck--l~ddd~~k~~yHC~~CgiCR~G~~e~ffHC~~C~~C~s 191 (307)
....|..|....... ..-..||+. ||..|- .+... . .|-+||.--..+..+ .
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~----fc~~Ci~~~~~~~-----~---~CP~Cr~~~~~~~l~--------~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV----FCSQCLRDSLKNA-----N---TCPTCRKKINHKRYH--------P 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE----EEHHHHHHHHTTC-----S---BCTTTCCBCTTTCEE--------E
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh----hhHHHHHHHHHhC-----C---CCCCCCCcCcccccc--------c
Confidence 467899998653211 145578884 577772 33221 1 344555543211110 0
Q ss_pred ccccccccccCCCCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 192 MLLKNSHPCVEGAMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 192 ~~l~~~H~CiE~~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+ .-+.....||||++.+.+. ....+.++|||.||..|+.+|++. +.+||+||.++..
T Consensus 66 l--------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 66 I--------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp C--------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred c--------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 0 1124467899999975432 234578899999999999999986 5799999998864
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=5.5e-10 Score=91.10 Aligned_cols=48 Identities=27% Similarity=0.690 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ .+.++|||+||..|+..|+......||+||+++..
T Consensus 52 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999996432 46789999999999999998656799999999864
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7e-10 Score=80.03 Aligned_cols=44 Identities=27% Similarity=0.838 Sum_probs=35.6
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc--CCCCCCCC
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 251 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPlC 251 (307)
..+..||||++.+.+ .++++|||.||..||.+|++. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999996432 466799999999999999974 45789998
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=81.92 Aligned_cols=49 Identities=27% Similarity=0.608 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC-----CCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-----~~~CPlCrks~~d 257 (307)
....||||++.+.+ .++++|||.||..|+..|+... ...||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 36789999996432 3578999999999999999862 5789999998763
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.88 E-value=3e-10 Score=84.85 Aligned_cols=49 Identities=29% Similarity=0.751 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC------CCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~------~~~CPlCrks~~d 257 (307)
.+..||||++.+ .. .+.++|||.||..|+.+|+... ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~~-~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELL-TE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEEC-SS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCccc-CC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 357899999964 32 3558999999999999999752 5789999998863
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1e-09 Score=77.25 Aligned_cols=43 Identities=37% Similarity=1.033 Sum_probs=34.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc--CCCCCCCC
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 251 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPlC 251 (307)
....||||++.+.+ .+.++|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46789999996433 356899999999999999654 46789998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=84.28 Aligned_cols=48 Identities=21% Similarity=0.670 Sum_probs=39.1
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHhhc-CCCCCCCCCcCcc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 256 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~-~~~~CPlCrks~~ 256 (307)
.+..||||++.+.+ .++++ |||+|+..||..|+.. ....||+||+++.
T Consensus 12 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 46789999996432 46788 9999999999999864 3478999999973
No 40
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.86 E-value=3e-10 Score=94.03 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=0.5
Q ss_pred CCCCcccccccccC--------------CceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s--------------~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
+..|+||++.+.+. ...++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 46888888875331 123455799999999999999985 689999998864
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=85.08 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=39.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ ++..++|||.||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4689999996433 3444599999999999999984 6899999999873
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=81.51 Aligned_cols=49 Identities=31% Similarity=0.750 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc-----CCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-----~~~~CPlCrks~~d 257 (307)
....||||++.+.+ .+.++|||.||..|+..|+.. ....||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999996432 356799999999999999875 26889999998863
No 43
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=83.75 Aligned_cols=53 Identities=19% Similarity=0.523 Sum_probs=41.2
Q ss_pred CCCCCCCcccccccccCCceeEEcCCC-----CccchHHHHHHhhcC-CCCCCCCCcCccc
Q 021781 203 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD 257 (307)
Q Consensus 203 ~~~~~~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Ci~~wl~~~-~~~CPlCrks~~d 257 (307)
...+..|+||++.+ +...+ +++||+ |.||..||++||... ..+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~-~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEG-DDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCC-CSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccc-cCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999864 33344 468996 999999999999863 3689999998853
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.84 E-value=2e-09 Score=85.79 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ ++.+++|||+||..|+..|+.. +..||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5789999996432 4555599999999999999985 5899999999863
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=6.6e-10 Score=89.33 Aligned_cols=48 Identities=35% Similarity=0.874 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..||||++.+.+ .+.++|||+||..|+..|+......||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 5679999996543 46779999999999999998667899999999863
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.83 E-value=1.9e-09 Score=91.90 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
+..||||++.+.+ ++.+++|||.||..|+..|+......||+||..+.
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4589999996433 45556999999999999999865788999999985
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=3.3e-09 Score=90.26 Aligned_cols=48 Identities=23% Similarity=0.679 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...||||++.+.+ .++++|||+||..|+..|+......||+||..+..
T Consensus 78 ~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4689999996432 45689999999999999998766789999999874
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=5.2e-10 Score=94.44 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc--------chhHHH--HhhHHHHHcCCC
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC--------DMSKVW--EKYDREIAATPM 274 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~--------dm~~~~--~~lD~eia~~pm 274 (307)
.+..||||++.+.+ .+.++|||.||..||.+|+.....+||+||+++. .....+ ..+.++|...++
T Consensus 30 ~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 30 AKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred cCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 36789999996433 3668999999999999999866568999999752 111111 235667777666
Q ss_pred Ch--hhcCceEEEEEeee-cCCccccc
Q 021781 275 PE--AYLNKKVSFSYVSL-WSDGCLSV 298 (307)
Q Consensus 275 P~--ey~n~~v~Is~~r~-~~~~C~s~ 298 (307)
.. ...++.+.+..+.. |...|.+.
T Consensus 106 ~Cpn~GC~~~~~l~~l~~~H~~~~~~~ 132 (141)
T 3knv_A 106 VCPSDGCTWKGTLKEYESCHEGRCPLM 132 (141)
T ss_dssp ECCSTTCCCEEEHHHHHHHTTTCCHHH
T ss_pred ccCCCCCCCEeEHHHHHHHHHHHhHHH
Confidence 54 34567666666666 76666543
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.4e-09 Score=84.01 Aligned_cols=47 Identities=26% Similarity=0.741 Sum_probs=38.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC--CCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~~CPlCrks~~ 256 (307)
...||||++.+.+ .+.++|||.||..|+..|+... ..+||+||..+.
T Consensus 21 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4589999996432 3558999999999999999853 258999999876
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.73 E-value=1.2e-09 Score=93.37 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccchhH-HHHhhHHHHHcCCCCh--hhcCc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSK-VWEKYDREIAATPMPE--AYLNK 281 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm~~-~~~~lD~eia~~pmP~--ey~n~ 281 (307)
.+..||||++.+.+ .+.++|||+|+..|+.+|+.....+||+||..+..... .-..+.++|...+++. ...++
T Consensus 17 ~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~ 92 (170)
T 3hcs_A 17 SKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLH 92 (170)
T ss_dssp GGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCC
T ss_pred CCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCc
Confidence 35789999996433 35689999999999999998655699999999875211 1123556666665544 34455
Q ss_pred eEEEEEeeecC
Q 021781 282 KVSFSYVSLWS 292 (307)
Q Consensus 282 ~v~Is~~r~~~ 292 (307)
.+.+..+.-|.
T Consensus 93 ~~~~~~l~~H~ 103 (170)
T 3hcs_A 93 KMELRHLEDHQ 103 (170)
T ss_dssp EEEGGGHHHHH
T ss_pred eecHhHHHHHH
Confidence 55544444443
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.9e-08 Score=73.81 Aligned_cols=50 Identities=18% Similarity=0.453 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 203 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 203 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...+..|+||++... ..+++ ||||. |+.+|+..|... +..||+||+.+..
T Consensus 5 ~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 345678999998532 34555 99999 899999999874 5789999998864
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.57 E-value=1.7e-08 Score=75.81 Aligned_cols=43 Identities=26% Similarity=0.767 Sum_probs=36.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..|+||++.+. .++.+||||. |+..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 468999999643 3678899999 999999888 679999998864
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.2e-08 Score=72.81 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=36.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
.....||||++.+ .. .++|+|||+|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~-~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA-KC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC-BC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCcc-CC---eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 3467899999964 32 467899999999999774 468999999875
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.55 E-value=4.6e-08 Score=75.61 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++.|.+ .++++|||+|.+.||.+|+.. +.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccCchhcC----CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 46899999995433 577899999999999999985 6899999998863
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=9.5e-08 Score=85.85 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=42.4
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 202 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+......||||++. +. +++++||||+|++.||..|+.....+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~-~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSB-CS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCH-hc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34557889999995 43 257789999999999999998655669999999863
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.4e-08 Score=82.20 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=36.9
Q ss_pred CCCCcccccccccCCceeEEc-CCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
+..||||++.+.+ .+++ +|||+||..|+..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5789999996432 3556 9999999999999986 78999999985
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.53 E-value=3.8e-08 Score=72.01 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=38.6
Q ss_pred CCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+||++...+ .+++ ||||. |+.+|+..|.+. +..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 346789999985322 3344 99998 999999999874 5789999998864
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.52 E-value=6.2e-08 Score=77.39 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=41.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
..+..||||++.| . ++++++|||+|.+.||..|+.. +.+||+||.++..
T Consensus 27 p~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM-T---DPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC-S---SEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcc-c---CCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 3468999999954 3 2577899999999999999984 6899999999863
No 59
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=6.9e-08 Score=73.88 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC-CCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~~CPlCrks~~d 257 (307)
...|+||.+.+ ... ..-..|+|.||..||.+||+.. +.+||+||.++..
T Consensus 15 i~~C~IC~~~i-~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLL-IQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBC-SSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHc-ccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 46899999954 432 3334899999999999999853 2789999988763
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.48 E-value=1e-07 Score=75.88 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCceeEEcCCC-CccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.+..||||++. +. +.++++|| |+|.+.||.+|+.. ..+||+||.++..
T Consensus 21 ~~~~CpI~~~~-m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTL-MC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred HhcCCcCcccc-cc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 46899999995 43 25778999 99999999999985 6899999999863
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.42 E-value=1.5e-07 Score=92.00 Aligned_cols=49 Identities=31% Similarity=0.736 Sum_probs=40.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
....|+||++.+ ..++.+||||.||..|+..|+.....+||+||.++..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999964 2367899999999999999998446889999998864
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=2e-07 Score=73.06 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=36.7
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHhhcC-----CCCCCC--CCcC
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 254 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~-----~~~CPl--Crks 254 (307)
.+..||||++. +. +.++++ |||+|.+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999995 44 246675 99999999999999752 468999 9866
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=70.27 Aligned_cols=43 Identities=26% Similarity=0.767 Sum_probs=34.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..|+||++.+. .++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 457999998632 3577899999 999999643 679999998865
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=6.6e-07 Score=69.58 Aligned_cols=52 Identities=23% Similarity=0.508 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc-------CCCCCCC--CCcC--ccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS--VCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-------~~~~CPl--Crks--~~d 257 (307)
....||||++. +.....+.+.+|||.|+++|+..|+.. ...+||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 35689999996 443333344589999999999998763 1357999 9998 553
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.3e-07 Score=67.06 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=37.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+||++.. ..+++|||||. |+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4467899999852 34788999999 99999984 2679999999875
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=3.1e-07 Score=70.13 Aligned_cols=43 Identities=35% Similarity=0.827 Sum_probs=35.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..|+||++.. ..++++||||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 45799999853 24788999999 999999876 389999999875
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.21 E-value=1.7e-06 Score=76.33 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
..+..||||++.|.+ ++++||||+|.+.||..|+.....+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 446789999995433 57789999999999999997644579999998863
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.09 E-value=1.4e-06 Score=63.67 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=38.5
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCC--C---ccchHHHHHHhhc-CCCCCCCCCcCcc
Q 021781 202 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 256 (307)
Q Consensus 202 E~~~~~~CPIClE~lf~s~~~v~~LpCG--H---~fH~~Ci~~wl~~-~~~~CPlCrks~~ 256 (307)
|......|.||++.. ..+ .++||. + .||..|+++|+.. .+.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 445677899999852 223 358865 4 8999999999975 4678999998764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.6e-06 Score=79.47 Aligned_cols=50 Identities=22% Similarity=0.580 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc-CCCCCCC--CCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~~CPl--Crks~~ 256 (307)
..+..||||+++|. +||+...|||+|.+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45779999999643 35666799999999999999875 3467999 999875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.89 E-value=2.2e-06 Score=82.97 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=39.2
Q ss_pred CCCCCCcccccccccCCcee----EEcCCCCccchHHHHHHhhcCC----------CCCCCCCcCcc
Q 021781 204 AMHHDCPVCCEYLFETRQDV----IVLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC 256 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v----~~LpCGH~fH~~Ci~~wl~~~~----------~~CPlCrks~~ 256 (307)
.....|+||++++.+++.-. .-++|||.||..|+.+|+++.. ..||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45779999999765523211 1358999999999999997421 35999999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.84 E-value=4.2e-06 Score=80.38 Aligned_cols=43 Identities=30% Similarity=0.858 Sum_probs=36.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+..|+||++.+. .++.+||||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 568999999643 3678899999 999999887 579999998864
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.59 E-value=3.4e-05 Score=56.32 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCCceeEEc-CCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+...|||+++.|.+ .+++ ++||+|-+.+|.+|+.. +.+||+.++++..
T Consensus 2 ~~~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 35689999995432 3555 99999999999999985 4679999998863
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.47 E-value=8.3e-05 Score=60.11 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=39.3
Q ss_pred CCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccch
Q 021781 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (307)
Q Consensus 208 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~dm 258 (307)
-|++|.-++. ...+.+||+|+|+.+|+..|.+....+||.|+.++.+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4888876532 24578899999999999999876678999999998764
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.08 E-value=0.004 Score=56.68 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=36.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcC-CCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~~CPlCrks~~d 257 (307)
-..|.||.+-+.. ...=..|+|.||..|+..|++.. +..||.|+..+..
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4578888885432 23333499999999999998753 4689999998753
No 75
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.77 E-value=0.086 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.684 Sum_probs=19.3
Q ss_pred eeeeCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021781 121 QVICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF 155 (307)
Q Consensus 121 ~v~C~~C~~eQ~v~~~C~~Cg~~f--------a~YfC~~Ckl~ 155 (307)
...|..|+..-+....||.||..+ ..|||.-|+=.
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred ceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 334555655544433555555554 37777777633
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.12 E-value=0.12 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchHHHHH-Hh
Q 021781 206 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKE-MR 241 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~-wl 241 (307)
+..|+||++.++. .++.. +.|||.|+..|++. |.
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 4679999974333 23333 89999999999998 53
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.98 E-value=0.67 Score=39.23 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=34.9
Q ss_pred cCCCCCCCCcccccccccCCceeEE-cCCCCccchHHHHHHhh----------cCCCCCCCCCcC
Q 021781 201 VEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE----------HHQYACPICSKS 254 (307)
Q Consensus 201 iE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~----------~~~~~CPlCrks 254 (307)
.+...+..|.||.+. ++ +.. =.|--+||..|+..-+. .....||+|+-.
T Consensus 58 d~Dg~~d~C~vC~~G----G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC----SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC----Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 456678999999972 22 221 17889999999996542 356789999954
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=88.43 E-value=0.2 Score=40.17 Aligned_cols=33 Identities=24% Similarity=0.673 Sum_probs=19.3
Q ss_pred eeeCCCCccccccccCcCCCCcc--------ceEecCcccc
Q 021781 122 VICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKL 154 (307)
Q Consensus 122 v~C~~C~~eQ~v~~~C~~Cg~~f--------a~YfC~~Ckl 154 (307)
..|..|+..-.....||.|+..+ +.|||..|+=
T Consensus 49 ~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chg 89 (101)
T 2jne_A 49 ARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHG 89 (101)
T ss_dssp EEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTE
T ss_pred EECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCc
Confidence 34555555555555566665554 5677777763
No 79
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.71 E-value=0.17 Score=40.55 Aligned_cols=75 Identities=17% Similarity=0.439 Sum_probs=43.3
Q ss_pred cCCccceecCCccceeecc-c-----------cccccccCCCCCCCCcccccccccCCceeEE-cCCCCccchHHHHHHh
Q 021781 175 GGCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMR 241 (307)
Q Consensus 175 G~~e~ffHC~~C~~C~s~~-l-----------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl 241 (307)
|.+++...|..|+.-|-.+ | ...=.|.+= ..|.||.+.-.+. ..++. -.|...||..|+.+-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCc-cceEEcCCCCCeeecccCCCCC
Confidence 4456788888887666332 1 122233321 1577887531111 11221 2688999999997655
Q ss_pred hc---CCCCCCCCCc
Q 021781 242 EH---HQYACPICSK 253 (307)
Q Consensus 242 ~~---~~~~CPlCrk 253 (307)
.. +...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 43 3577999985
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.90 E-value=0.25 Score=39.20 Aligned_cols=82 Identities=22% Similarity=0.547 Sum_probs=43.6
Q ss_pred CCCcccccCC-ccceecCCccceee-----cccc----ccccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHH
Q 021781 168 GCGICRIGGC-DNFFHCNKCRCCYS-----MLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 237 (307)
Q Consensus 168 ~CgiCR~G~~-e~ffHC~~C~~C~s-----~~l~----~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci 237 (307)
.|.||..||. ++...|+.|+.-|- +.+. +.=.|.+= ..|.||... .+...-+.--.|+-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 4666666653 55677777765543 2221 11112110 146677753 111111112278899999999
Q ss_pred HHHhhc---CCCCCCCCCc
Q 021781 238 KEMREH---HQYACPICSK 253 (307)
Q Consensus 238 ~~wl~~---~~~~CPlCrk 253 (307)
.+-+.. ....||.|+.
T Consensus 85 ~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHC
T ss_pred CCccccCCCCCcCCcCCcC
Confidence 864432 3567888864
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.14 E-value=0.24 Score=39.59 Aligned_cols=45 Identities=24% Similarity=0.501 Sum_probs=33.6
Q ss_pred CCCCcccccccccCCceeEEcCC-CCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPC-GHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpC-GH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
..+|-.|... +. .++.| .|.++..|+..+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCWf~-~k-----~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFE-NK-----GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSC-CS-----SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhccc-cC-----CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 3566667631 11 24567 599999999999985 6899999999874
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.59 E-value=0.11 Score=41.93 Aligned_cols=82 Identities=21% Similarity=0.527 Sum_probs=46.5
Q ss_pred CCCCcccccC--------CccceecCCccceeec-----cc-------cccccccCCCCCCCCcccccccccCCceeEEc
Q 021781 167 DGCGICRIGG--------CDNFFHCNKCRCCYSM-----LL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL 226 (307)
Q Consensus 167 ~~CgiCR~G~--------~e~ffHC~~C~~C~s~-----~l-------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L 226 (307)
+.|+||..|+ +++...|+.|+.-+-. .+ .+.=.|.+= ..|.||...- + . ..+++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~-~-~~ll~ 75 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-N-D-DQLLF 75 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-T-T-TTEEE
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-C-C-CceEE
Confidence 3466665443 4678888888765432 21 112223221 2578887631 1 1 12333
Q ss_pred --CCCCccchHHHHHHhhc---CCCCCCCCCcC
Q 021781 227 --PCGHTIHKNCLKEMREH---HQYACPICSKS 254 (307)
Q Consensus 227 --pCGH~fH~~Ci~~wl~~---~~~~CPlCrks 254 (307)
.|...||..|+..=|.. +...||.|...
T Consensus 76 Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 76 CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCccccccccCCCccCCCCCCeECccccch
Confidence 78899999999864332 35668888643
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.10 E-value=3 Score=32.84 Aligned_cols=70 Identities=19% Similarity=0.580 Sum_probs=34.9
Q ss_pred ceeeeCCCCcccccc--ccCcCCCCccceEecCcccccc-CCCCCCeecCCCC---CcccccC-CccceecCCccceeec
Q 021781 120 NQVICSLCGTEQKVQ--QVCVNCGVCMGEYFCESCKLFD-DDTSKKQYHCDGC---GICRIGG-CDNFFHCNKCRCCYSM 192 (307)
Q Consensus 120 ~~v~C~~C~~eQ~v~--~~C~~Cg~~fa~YfC~~Ckl~d-dd~~k~~yHC~~C---giCR~G~-~e~ffHC~~C~~C~s~ 192 (307)
++.+|..|+...... ..|..|+..|= ..|--.. .......+.|+.| .+|+.++ .+....|+.|+.-|-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H----~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYH----GMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEEC----TTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcC----hHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 345566665543321 34555554431 1121111 1112345666654 4555554 2468889988877665
Q ss_pred c
Q 021781 193 L 193 (307)
Q Consensus 193 ~ 193 (307)
.
T Consensus 82 ~ 82 (111)
T 2ysm_A 82 F 82 (111)
T ss_dssp G
T ss_pred H
Confidence 3
No 84
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.17 E-value=1.8 Score=34.72 Aligned_cols=65 Identities=23% Similarity=0.505 Sum_probs=30.2
Q ss_pred CcccCceeeeCCCCccccccccCcCCCCccceEecCccccccCCCCCCeecCCCCC----cccccCCccceecCCcccee
Q 021781 115 PRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG----ICRIGGCDNFFHCNKCRCCY 190 (307)
Q Consensus 115 dR~~v~~v~C~~C~~eQ~v~~~C~~Cg~~fa~YfC~~Ckl~ddd~~k~~yHC~~Cg----iCR~G~~e~ffHC~~C~~C~ 190 (307)
.|....+..|..|+.+..-.. +.|+|+.|.-- =+.+-.|++|| +...=|-.||| |..|+-=+
T Consensus 26 ~~~~~M~~~CP~Cq~eL~~~g---------~~~hC~~C~~~----f~~~a~CPdC~q~LevLkACGAvdYF-C~~chgLi 91 (101)
T 2jne_A 26 PRGSHMELHCPQCQHVLDQDN---------GHARCRSCGEF----IEMKALCPDCHQPLQVLKACGAVDYF-CQHGHGLI 91 (101)
T ss_dssp -----CCCBCSSSCSBEEEET---------TEEEETTTCCE----EEEEEECTTTCSBCEEEEETTEEEEE-ETTTTEEE
T ss_pred cCcccccccCccCCCcceecC---------CEEECccccch----hhccccCcchhhHHHHHHHhcCcchh-hccCCcee
Confidence 444334567777776643210 22235555320 13456677776 22222345555 66666655
Q ss_pred ecc
Q 021781 191 SML 193 (307)
Q Consensus 191 s~~ 193 (307)
|++
T Consensus 92 SKk 94 (101)
T 2jne_A 92 SKK 94 (101)
T ss_dssp CTT
T ss_pred ecc
Confidence 553
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.92 E-value=5 Score=31.70 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=41.9
Q ss_pred cCCCCCCCCcccccccccCCceeEEc---CCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 201 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 201 iE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
+.......|.||.+.+-.....-.+. -|+-.+++.|++.-.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44445679999999864433332333 567889999999988888899999998775
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=72.70 E-value=4.4 Score=33.68 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=34.4
Q ss_pred ccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHh----------hcCCCCCCCCCcC
Q 021781 200 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKS 254 (307)
Q Consensus 200 CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl----------~~~~~~CPlCrks 254 (307)
=.+...+..|.||.+- ++-+-==.|-.+||.+|+..-+ ......|++|+-.
T Consensus 51 ~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456678889999962 2211111678999999999752 2345789999754
No 87
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.28 E-value=2.8 Score=30.67 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCcC
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrks 254 (307)
...|.||.+. .+-+.=-.|...||..|+...|.. ....||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4568899752 221111268899999999887654 35789999854
No 88
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=71.85 E-value=0.7 Score=36.70 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.4
Q ss_pred EcCCCCccchHHHHHHhhc-------CCCCCCCCCc
Q 021781 225 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 253 (307)
Q Consensus 225 ~LpCGH~fH~~Ci~~wl~~-------~~~~CPlCrk 253 (307)
--.|...+|..|+...... ..+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4578999999998754321 1377999985
No 89
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.74 E-value=4.8 Score=30.28 Aligned_cols=64 Identities=23% Similarity=0.549 Sum_probs=38.4
Q ss_pred CccceecCCccceeeccccccccccCCCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHhhc---C-CCCCCC
Q 021781 177 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---H-QYACPI 250 (307)
Q Consensus 177 ~e~ffHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~-~~~CPl 250 (307)
+.++..|..|+. ...=.|. +..|.||... . ... .+++ .|...||..|+.+=|.. + ...||.
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~-~-~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCH----SCSCRVCGGK-H-EPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCS----SSSCSSSCCC-C-CST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred ccCCccChhhcC------CCCeECC----CCCCcCcCCc-C-CCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcC
Confidence 356666666654 1233443 2378889852 1 111 2223 78899999999864432 3 567999
Q ss_pred CCc
Q 021781 251 CSK 253 (307)
Q Consensus 251 Crk 253 (307)
|..
T Consensus 74 C~~ 76 (77)
T 2e6s_A 74 CKT 76 (77)
T ss_dssp TCC
T ss_pred ccC
Confidence 974
No 90
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.60 E-value=2 Score=30.60 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=31.0
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhh----cCCCCCCCCCcC
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 254 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~~CPlCrks 254 (307)
....||||.....+...-+.--.|...||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999875322221111226889999999865322 146889999753
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.01 E-value=7 Score=30.13 Aligned_cols=23 Identities=17% Similarity=0.593 Sum_probs=12.3
Q ss_pred eeeCCCCcccccc---ccCcCCCCcc
Q 021781 122 VICSLCGTEQKVQ---QVCVNCGVCM 144 (307)
Q Consensus 122 v~C~~C~~eQ~v~---~~C~~Cg~~f 144 (307)
+.|..|+.+.+.. ..|..|++.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF 28 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE
T ss_pred CCCCCCCCccccCCCceECccccccC
Confidence 4566676653321 2366666654
No 92
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.15 E-value=5.5 Score=27.74 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=8.1
Q ss_pred ccccccCcCCCC
Q 021781 131 QKVQQVCVNCGV 142 (307)
Q Consensus 131 Q~v~~~C~~Cg~ 142 (307)
......||.||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 334567888887
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=53.50 E-value=2.9 Score=30.67 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=31.0
Q ss_pred CCCCcccccccccCCceeEEc--CCCCccchHHHHHHhhc---CCCCCCCCCcCc
Q 021781 206 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~~~~CPlCrks~ 255 (307)
...|+||... .+ .. .+++ .|.-.||..|+..-+.. ..+.||.|+..+
T Consensus 18 ~~~C~~C~~~-~~-~~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKP-DD-GS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBC-CS-SC-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCC-CC-CC-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3469999864 22 11 2333 68899999999764432 368899998644
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.05 E-value=9.4 Score=25.77 Aligned_cols=45 Identities=27% Similarity=0.645 Sum_probs=27.5
Q ss_pred CCcccccccccCCceeEE-cCCCCccchHHHHHHhhc---CCCCCCCCCcC
Q 021781 208 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (307)
Q Consensus 208 ~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~~---~~~~CPlCrks 254 (307)
.|.||... .+ ...++. -.|.-.||..|+..=+.. +...||.|+..
T Consensus 2 ~C~vC~~~-~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777752 11 111221 268899999999753332 35779999753
No 95
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=51.52 E-value=4.4 Score=34.37 Aligned_cols=29 Identities=31% Similarity=0.833 Sum_probs=19.4
Q ss_pred EecCccccccCCCCCCeecCCCCCccccc
Q 021781 147 YFCESCKLFDDDTSKKQYHCDGCGICRIG 175 (307)
Q Consensus 147 YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G 175 (307)
|-|+.|.+=--...++-|||+.||+|---
T Consensus 99 yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 99 YHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 55544444433346889999999999543
No 96
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=51.41 E-value=9.4 Score=27.13 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=30.5
Q ss_pred CCCCCCcccccccccCCceeEE-cCCCCccchHHHHHHhh---cCCCCCCCCCc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE---HHQYACPICSK 253 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~---~~~~~CPlCrk 253 (307)
..+..|.||.+. . .++. -.|.-.||..|+..-+. .....||.|.+
T Consensus 9 ~~~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 446789999862 1 1211 16778999999987443 24577999975
No 97
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=51.26 E-value=7.2 Score=32.79 Aligned_cols=25 Identities=28% Similarity=0.805 Sum_probs=18.0
Q ss_pred cccccccCcC--CCC------ccceEecCcccc
Q 021781 130 EQKVQQVCVN--CGV------CMGEYFCESCKL 154 (307)
Q Consensus 130 eQ~v~~~C~~--Cg~------~fa~YfC~~Ckl 154 (307)
.+.....||+ ||. .+.|+||++|.+
T Consensus 114 ~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 114 VTKLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp EECCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred EEECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 3444567999 987 456888888864
No 98
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.33 E-value=15 Score=35.65 Aligned_cols=71 Identities=18% Similarity=0.451 Sum_probs=47.3
Q ss_pred eecCCccceeeccccccccccCCCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHhhc---------CCCCCC
Q 021781 181 FHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---------HQYACP 249 (307)
Q Consensus 181 fHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---------~~~~CP 249 (307)
|.---|..|...-+.+...-.+...+..|.+|.+. ++-+.== .|...|+..||+.++.. ....|=
T Consensus 68 ~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf 143 (386)
T 2pv0_B 68 FEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCY 143 (386)
T ss_dssp BSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCT
T ss_pred cCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEE
Confidence 33445555665555556666778889999999973 2212112 68899999999998832 346688
Q ss_pred CCCcCc
Q 021781 250 ICSKSV 255 (307)
Q Consensus 250 lCrks~ 255 (307)
+|.-.-
T Consensus 144 ~C~p~p 149 (386)
T 2pv0_B 144 LCLPSS 149 (386)
T ss_dssp TTSSCC
T ss_pred EcCCcc
Confidence 887553
No 99
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=43.68 E-value=15 Score=26.02 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=4.7
Q ss_pred cccCcCCCC
Q 021781 134 QQVCVNCGV 142 (307)
Q Consensus 134 ~~~C~~Cg~ 142 (307)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 345555554
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.09 E-value=16 Score=34.24 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=21.3
Q ss_pred CceeeeCCCCccccc-cccCcCCCCc
Q 021781 119 VNQVICSLCGTEQKV-QQVCVNCGVC 143 (307)
Q Consensus 119 v~~v~C~~C~~eQ~v-~~~C~~Cg~~ 143 (307)
..-+.|+.|+++..+ -..|++||..
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 347999999999887 4689999997
No 101
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.04 E-value=17 Score=25.84 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCCCCccccccccc---CCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~---s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
....|+.|.+.+.. ....+. .=|..+|.+|+ +|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVA--YEGQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEE--ETTEEEETTTC---------BCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEE--ECcceeCcccC---------EehhcCCCCCC
Confidence 34679999987664 223333 34788998764 58889988863
No 102
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=43.04 E-value=9.1 Score=33.34 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=31.9
Q ss_pred CCCcccccccccCCc-eeEEc---CCCCccchHHHHHH------hh----cCCCCCCCCCcCccc
Q 021781 207 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKEM------RE----HHQYACPICSKSVCD 257 (307)
Q Consensus 207 ~~CPIClE~lf~s~~-~v~~L---pCGH~fH~~Ci~~w------l~----~~~~~CPlCrks~~d 257 (307)
..||||... ++..+ ....+ .|...||..|..-- +. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 459999874 33332 11222 67899999998431 11 026999999988764
No 103
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.24 E-value=17 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=28.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+.|.+.+......+. .=|..+|.+|+ +|-.|++++.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEE--ETTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEE--eCccEeccccC---------eECCCCCCCCC
Confidence 445789999987653322222 34778888765 57888888764
No 104
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.03 E-value=21 Score=25.66 Aligned_cols=42 Identities=24% Similarity=0.492 Sum_probs=27.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
....|+.|.+.+..... ++..=|..+|.+|+ +|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQ--NVEYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSC--EEECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred cCCcCccCCcccccCce--EEEECccccccccC---------chhhCCCccCC
Confidence 34678889887653222 22334788888665 57788888764
No 105
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=39.64 E-value=23 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=9.2
Q ss_pred ccceecCCccceeec
Q 021781 178 DNFFHCNKCRCCYSM 192 (307)
Q Consensus 178 e~ffHC~~C~~C~s~ 192 (307)
+.-|.|..|+.-+..
T Consensus 62 ~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 62 ERPFKCQICPYASRN 76 (96)
T ss_dssp CCCEECSSSSCEESS
T ss_pred CCCccCCCCCCccCC
Confidence 445677777765543
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=38.90 E-value=8.6 Score=33.45 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHhhc---CCCCCCCCCcCc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~~~~CPlCrks~ 255 (307)
..+..|.+|... ++ .++ .|.-.||..|+.+-+.. +...||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345678999852 21 222 57899999999876543 357899998753
No 107
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=38.61 E-value=34 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=21.5
Q ss_pred ccCceeeeCCCCccccc-cccCcCCCCc
Q 021781 117 HEVNQVICSLCGTEQKV-QQVCVNCGVC 143 (307)
Q Consensus 117 ~~v~~v~C~~C~~eQ~v-~~~C~~Cg~~ 143 (307)
+....++|+.|+...++ +..|..||..
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HHhchhhhccccCcCCcccccccCCCCC
Confidence 34467999999999887 6789988853
No 108
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.54 E-value=17 Score=25.45 Aligned_cols=40 Identities=20% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
...|+.|.+.+......+ ..=|..+|.+|+ +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV--VALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE--ECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE--EECCCeEcccCC---------cccccCCcCC
Confidence 457888887665422222 234778887654 5777887774
No 109
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=38.53 E-value=17 Score=27.20 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=18.5
Q ss_pred cCceeeeCCCCccccccccCcCCCC
Q 021781 118 EVNQVICSLCGTEQKVQQVCVNCGV 142 (307)
Q Consensus 118 ~v~~v~C~~C~~eQ~v~~~C~~Cg~ 142 (307)
...+..|..|...+ ..+.|||||.
T Consensus 8 ~~~~~AC~~C~~~~-~~~~CPnC~s 31 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-SEDRCPVCGS 31 (69)
T ss_dssp ---CEEETTTCBEE-SSSSCTTTCC
T ss_pred CchhhhHHhCCccc-cCCcCCCccC
Confidence 35688999999988 7788999984
No 110
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=38.44 E-value=13 Score=34.12 Aligned_cols=19 Identities=32% Similarity=1.125 Sum_probs=12.6
Q ss_pred ccCcCCCC----------ccceEecCccc
Q 021781 135 QVCVNCGV----------CMGEYFCESCK 153 (307)
Q Consensus 135 ~~C~~Cg~----------~fa~YfC~~Ck 153 (307)
-+||+||. +.|.+||+.|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 47999988 33556666664
No 111
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.13 E-value=8.9 Score=27.25 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=30.1
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCcCc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrks~ 255 (307)
..+..|.||.+. ..-+.=-.|.-.||..|+..-+.. ....||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345678888752 110111157889999999864432 357799998653
No 112
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.24 E-value=24 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.519 Sum_probs=26.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+......+ ..=|..+|.+|+ +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM--EYKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE--EETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEE--EECcCeecccCC---------cccccCCccCC
Confidence 457888888765432222 234778887665 57788887764
No 113
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.79 E-value=27 Score=27.30 Aligned_cols=32 Identities=28% Similarity=0.754 Sum_probs=23.6
Q ss_pred CCCCCCcccccccccCCceeEEcC---CCCccchHHHHHH
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLP---CGHTIHKNCLKEM 240 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~Lp---CGH~fH~~Ci~~w 240 (307)
..+..|+||-. +++. ..+| ||-.||..|+++.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 35788999985 4432 3445 5899999999996
No 114
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=35.74 E-value=33 Score=33.17 Aligned_cols=48 Identities=15% Similarity=0.447 Sum_probs=33.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchHHHHHHh-hcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMR-EHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Ci~~wl-~~~~~~CPlCrks~~ 256 (307)
...||+=+..|. .+++...|.|. |=.+=+..+. +.....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 467998887543 47888999997 5444444433 235688999999985
No 115
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.61 E-value=16 Score=23.69 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=11.2
Q ss_pred CCCCCCCCcCccch
Q 021781 245 QYACPICSKSVCDM 258 (307)
Q Consensus 245 ~~~CPlCrks~~dm 258 (307)
.+.||+|.+.+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 37799999998864
No 116
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.21 E-value=27 Score=24.83 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCCCCccccccccc--CCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 205 MHHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 205 ~~~~CPIClE~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
....|+.|.+.+.. ..+. +..=|..+|.+|+ +|-.|++++.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~--~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKF--ICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCE--EEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred cCCCCccCCCcccCCCCcee--EEECCcccCcccC---------ChhhCCCcCC
Confidence 34678999987764 2222 3345888998775 5888988875
No 117
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.71 E-value=18 Score=25.25 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+.... .++..=|..+|.+|+ +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccC---------eECCCCCcCCC
Confidence 457888888765322 233345888888764 57788887753
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=34.12 E-value=12 Score=25.63 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=26.0
Q ss_pred CCcccccccccCCceeEE-c-CCCCccchHHHHHHh---hcCCCCCCCCC
Q 021781 208 DCPVCCEYLFETRQDVIV-L-PCGHTIHKNCLKEMR---EHHQYACPICS 252 (307)
Q Consensus 208 ~CPIClE~lf~s~~~v~~-L-pCGH~fH~~Ci~~wl---~~~~~~CPlCr 252 (307)
.|+||..+..+ ....+. - .|.--||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~-~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57788765322 222222 2 477889999975321 12579999985
No 119
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.03 E-value=15 Score=29.31 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=5.8
Q ss_pred cccccCcCCCCcc
Q 021781 132 KVQQVCVNCGVCM 144 (307)
Q Consensus 132 ~v~~~C~~Cg~~f 144 (307)
|+.-.|.+||..|
T Consensus 71 p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 71 KVELECKDCSHVF 83 (119)
T ss_dssp CCEEECSSSSCEE
T ss_pred cceEEcCCCCCEE
Confidence 3334444554443
No 120
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.92 E-value=37 Score=32.70 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=33.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchHHHHHHhh-cCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Ci~~wl~-~~~~~CPlCrks~~ 256 (307)
...|||=+..|. .+++...|.|. |=.+=+-.+.. .....||+|++.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 457998887543 47888899988 55544444332 35688999999986
No 121
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.56 E-value=14 Score=27.19 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHH-hhcCCCCCCCCCc
Q 021781 202 EGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSK 253 (307)
Q Consensus 202 E~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~w-l~~~~~~CPlCrk 253 (307)
+...+..|.||.+.-.+.. ..+++ .|.-.||..|+..- +-.+...||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3455788999986321122 22333 78899999999753 2224567887753
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.39 E-value=62 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.701 Sum_probs=12.9
Q ss_pred CCcccccC-CccceecCCccceeec
Q 021781 169 CGICRIGG-CDNFFHCNKCRCCYSM 192 (307)
Q Consensus 169 CgiCR~G~-~e~ffHC~~C~~C~s~ 192 (307)
|-+|+.++ .+....|+.|..-|-+
T Consensus 29 C~vC~~~~d~~~ll~CD~C~~~yH~ 53 (77)
T 3shb_A 29 CHLCGGRQDPDKQLMCDECDMAFHI 53 (77)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEET
T ss_pred CCccCCCCCCcceeEeCCCCCccCc
Confidence 33444443 2456677777665543
No 123
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.86 E-value=13 Score=22.93 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=18.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHH
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 237 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci 237 (307)
+...||.|...++.. +.+ ..=|..+|+.|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKV--NCLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCC--CSSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeE--EECCeEecccCC
Confidence 456788888766542 222 234788888874
No 124
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.75 E-value=12 Score=31.75 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=30.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCcCc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrks~ 255 (307)
+..|.||.+. ++-+.-=.|.-.||..|+..-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4678888852 221111157889999999776543 357799999754
No 125
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=32.68 E-value=23 Score=24.74 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=12.5
Q ss_pred ceEecCcc-ccccCCC--CCCeecCCCCCc
Q 021781 145 GEYFCESC-KLFDDDT--SKKQYHCDGCGI 171 (307)
Q Consensus 145 a~YfC~~C-kl~ddd~--~k~~yHC~~Cgi 171 (307)
+.|-|..| +-|+++. -.+--+|+.||.
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 34555555 3344332 235567777775
No 126
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.37 E-value=22 Score=30.54 Aligned_cols=64 Identities=19% Similarity=0.595 Sum_probs=41.4
Q ss_pred ccceeeccccccccccCCCCCCCCcccccccccCCceeEEc---CCCCccchHHHHHHhhc---------CCCCCCCCCc
Q 021781 186 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH---------HQYACPICSK 253 (307)
Q Consensus 186 C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Ci~~wl~~---------~~~~CPlCrk 253 (307)
|..|...-+.....-.+...+.-|.||.+. + .+..- .|-..|+.+||+.++.. ....|=+|.-
T Consensus 59 C~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 59 CQNCKNCFLECAYQYDDDGYQSYCTICCGG----R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred hHHHHHHHhhcccccCCCCCcceeeEecCC----C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 444444334445555778889999999972 2 23222 47789999999998753 2345767764
Q ss_pred C
Q 021781 254 S 254 (307)
Q Consensus 254 s 254 (307)
.
T Consensus 134 ~ 134 (159)
T 3a1b_A 134 K 134 (159)
T ss_dssp S
T ss_pred c
Confidence 4
No 127
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=32.19 E-value=21 Score=25.79 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.6
Q ss_pred eeCCCCccccccccCcCCCC
Q 021781 123 ICSLCGTEQKVQQVCVNCGV 142 (307)
Q Consensus 123 ~C~~C~~eQ~v~~~C~~Cg~ 142 (307)
.|+.|+..++.. .|||||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 588888887665 5888886
No 128
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.90 E-value=25 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCCCCCcccccccccCCceeEEcCC----CCccchHHHHHHhhc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPC----GHTIHKNCLKEMREH 243 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpC----GH~fH~~Ci~~wl~~ 243 (307)
.....|.+|.|.|-++ ....| +|.|+..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdt----HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT----HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST----TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC----ceeeCCCccCCeeeccccHHHHHh
Confidence 4567899999987553 34455 799999999999874
No 129
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.40 E-value=33 Score=23.55 Aligned_cols=42 Identities=17% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
....|+.|.+.+.... .++ ..=|..+|.+|+ +|-.|++++.+
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~-~~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIV-NSNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEE-EETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCc-eEE-EeCcCeeCcCCC---------cccCCCCCCCC
Confidence 4567999998765432 222 234778898776 58888888865
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.66 E-value=20 Score=25.54 Aligned_cols=38 Identities=32% Similarity=0.799 Sum_probs=20.5
Q ss_pred CCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 208 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.|+.|.+.+... +.+..+ |..+|.+|+ +|..|++++..
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~CF---------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPCL---------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTTC---------BCTTTCCBCCT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCCC---------CccccCccCCC
Confidence 366666654422 223322 667776553 46667766653
No 131
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.01 E-value=26 Score=26.02 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=4.4
Q ss_pred ecCCCCCc
Q 021781 164 YHCDGCGI 171 (307)
Q Consensus 164 yHC~~Cgi 171 (307)
-+|..||-
T Consensus 46 irCp~CG~ 53 (70)
T 1twf_L 46 VRCKDCGH 53 (70)
T ss_dssp TCCSSSCC
T ss_pred ccCCCCCc
Confidence 35666653
No 132
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.52 E-value=29 Score=30.05 Aligned_cols=55 Identities=27% Similarity=0.621 Sum_probs=27.6
Q ss_pred ecCccc-cccCCC-CCCeecCCCCCcccccCCccceecCCccceeecccccccccc--CCCCCCCCccccc
Q 021781 148 FCESCK-LFDDDT-SKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCV--EGAMHHDCPVCCE 214 (307)
Q Consensus 148 fC~~Ck-l~ddd~-~k~~yHC~~CgiCR~G~~e~ffHC~~C~~C~s~~l~~~H~Ci--E~~~~~~CPIClE 214 (307)
||++|+ .|+++. ....-.|+.| +++||- .|..++-.....-. ....+..||.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C--------~~W~H~----~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKC--------DRWVHS----KCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTT--------CCEEEG----GGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCC--------Ccccch----hccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 477773 455442 3456667766 567774 45444321000000 0012578999975
No 133
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.28 E-value=35 Score=25.36 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=12.3
Q ss_pred CCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 229 GHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 229 GH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
|..|+..|+.+. ...+|..|++.+.
T Consensus 53 g~~yC~~cy~~~---~~~~C~~C~~~I~ 77 (101)
T 2cup_A 53 NKILCNKCTTRE---DSPKCKGCFKAIV 77 (101)
T ss_dssp TEEECHHHHTTC---CCCBCSSSCCBCC
T ss_pred CEEEChhHhhhh---cCCccccCCCccc
Confidence 445555555332 2345666665554
No 134
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=29.25 E-value=9.8 Score=25.43 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=4.0
Q ss_pred CeecCCCCC
Q 021781 162 KQYHCDGCG 170 (307)
Q Consensus 162 ~~yHC~~Cg 170 (307)
.+|.|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 344444443
No 135
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.19 E-value=38 Score=17.71 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.4
Q ss_pred CCCCCCCcCccchh
Q 021781 246 YACPICSKSVCDMS 259 (307)
Q Consensus 246 ~~CPlCrks~~dm~ 259 (307)
|.|++|.+.+....
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 67999999987644
No 136
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.40 E-value=31 Score=23.22 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=3.5
Q ss_pred CcCCCCcc
Q 021781 137 CVNCGVCM 144 (307)
Q Consensus 137 C~~Cg~~f 144 (307)
|+.||..|
T Consensus 17 C~~C~k~F 24 (62)
T 1vd4_A 17 CPVCSSTF 24 (62)
T ss_dssp CSSSCCEE
T ss_pred CCCCCchh
Confidence 44444444
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.74 E-value=5.7 Score=30.39 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=33.0
Q ss_pred CCCCcccccccccCCceeEEc--CCCCccchHHHHHHhh-------cCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMRE-------HHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~-------~~~~~CPlCrks~~d 257 (307)
+..|.||... .......+++ .|...||..|+..-|. .....||.|......
T Consensus 16 ~~~C~vC~~~-~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQM-TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCC-CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCC-CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 5679999863 1111123333 7899999999987443 245779999754443
No 138
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.71 E-value=43 Score=24.65 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCcccccccccCCceeEEcCCCCccchHHHHHHhh----cCCCCCCCCCcCcc
Q 021781 207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSVC 256 (307)
Q Consensus 207 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~~CPlCrks~~ 256 (307)
..| ||.........-+.--.|.-.||..|+.--.. ...+.||.|+....
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 445 78764211111112226889999999953211 24689999997654
No 139
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=26.83 E-value=58 Score=25.49 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=18.5
Q ss_pred CCCCccchHHHHH------HhhcCCCCCCCCC
Q 021781 227 PCGHTIHKNCLKE------MREHHQYACPICS 252 (307)
Q Consensus 227 pCGH~fH~~Ci~~------wl~~~~~~CPlCr 252 (307)
.||..||..|+.. .+......||.|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 7899999999952 2334456677774
No 140
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.56 E-value=76 Score=24.38 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=29.3
Q ss_pred CCCcccccccccCCceeEEc--CCCCccchHHHHHHhhc--CCCCCCCCCcCccc
Q 021781 207 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH--HQYACPICSKSVCD 257 (307)
Q Consensus 207 ~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~--~~~~CPlCrks~~d 257 (307)
..| ||... .+. ..++. .|.-.||..|+..=+.. ..+.||.|+..-.+
T Consensus 29 vrC-iC~~~-~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~ 79 (98)
T 2lv9_A 29 TRC-ICGFT-HDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLD 79 (98)
T ss_dssp CCC-TTSCC-SCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCC
T ss_pred EEe-ECCCc-cCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCC
Confidence 346 77653 222 22333 68899999999753322 35889999865544
No 141
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.41 E-value=7 Score=27.17 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=28.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 253 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrk 253 (307)
.+..|.||.+. ..-+.=-.|.-.||..|+..-|.. ....||.|.+
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999863 111111267899999999864432 3466887753
No 142
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.30 E-value=33 Score=23.96 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=27.3
Q ss_pred CCCCccccccccc--CCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+.. ... + +..-|..+|.+|+ +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-Y-ISFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-C-EECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc-e-EEECCcccCcccC---------EeccCCCcCCC
Confidence 4578888887664 222 2 2335888898765 58888888753
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.04 E-value=1.1e+02 Score=22.07 Aligned_cols=35 Identities=23% Similarity=0.640 Sum_probs=19.8
Q ss_pred CCCCCCeecCCCCCcccccC-CccceecCCccceeec
Q 021781 157 DDTSKKQYHCDGCGICRIGG-CDNFFHCNKCRCCYSM 192 (307)
Q Consensus 157 dd~~k~~yHC~~CgiCR~G~-~e~ffHC~~C~~C~s~ 192 (307)
|+....-..| .|.+|+.+. .++..-|+.|..-|-+
T Consensus 10 ~~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 10 DDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp TCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred CCCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 3333333344 456666543 4577888888766654
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.98 E-value=34 Score=24.21 Aligned_cols=41 Identities=34% Similarity=0.726 Sum_probs=28.6
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+...|+.|.+.+... +.+. .=|..+|.+|+ +|..|++++..
T Consensus 8 ~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTT-TEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECC-eEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 356899999876642 2333 45888898764 58889988864
No 145
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.93 E-value=24 Score=26.94 Aligned_cols=50 Identities=22% Similarity=0.507 Sum_probs=31.5
Q ss_pred CCCCCcccccccccCCceeEEc--CCCCccchHHHHHH-hhcCCCCCCCCCcCc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSKSV 255 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~w-l~~~~~~CPlCrks~ 255 (307)
.+..|.||.+.-.. ....+++ .|.-.||..|+..- +-.+...||.|....
T Consensus 24 ~~~~C~vC~~~~s~-~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQ-NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSC-SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCC-CCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 46789999963111 1222332 67789999999753 222457799887544
No 146
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.83 E-value=30 Score=25.63 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=25.5
Q ss_pred ceeeeCCCCccccc---c---ccCcCCCCccceEecCccccc
Q 021781 120 NQVICSLCGTEQKV---Q---QVCVNCGVCMGEYFCESCKLF 155 (307)
Q Consensus 120 ~~v~C~~C~~eQ~v---~---~~C~~Cg~~fa~YfC~~Ckl~ 155 (307)
..|.|..|..+|.+ + -.|..||..+++-.=++-+|-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 46888888888876 1 358888888877665555554
No 147
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.49 E-value=49 Score=17.48 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.4
Q ss_pred CCCCCCCCcCccchhH
Q 021781 245 QYACPICSKSVCDMSK 260 (307)
Q Consensus 245 ~~~CPlCrks~~dm~~ 260 (307)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999986543
No 148
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.39 E-value=47 Score=17.51 Aligned_cols=15 Identities=13% Similarity=0.795 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchh
Q 021781 245 QYACPICSKSVCDMS 259 (307)
Q Consensus 245 ~~~CPlCrks~~dm~ 259 (307)
.+.|++|.+.+....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 2 SFVCEVCTRAFARQE 16 (29)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 378999999988643
No 149
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.37 E-value=33 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=8.1
Q ss_pred cCcCCCCccceEe
Q 021781 136 VCVNCGVCMGEYF 148 (307)
Q Consensus 136 ~C~~Cg~~fa~Yf 148 (307)
.|+.||..-+.|+
T Consensus 17 ~Cp~Cg~~~~~~~ 29 (57)
T 1qyp_A 17 TCPKCGNDTAYWW 29 (57)
T ss_dssp CCTTTCCSEEEEE
T ss_pred ECCCCCCCEEEEE
Confidence 5677776555555
No 150
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.31 E-value=31 Score=21.35 Aligned_cols=15 Identities=33% Similarity=0.884 Sum_probs=12.2
Q ss_pred CCCCCCCCcCccchh
Q 021781 245 QYACPICSKSVCDMS 259 (307)
Q Consensus 245 ~~~CPlCrks~~dm~ 259 (307)
.++||+|+..+.|+.
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 578999999888764
No 151
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=25.17 E-value=23 Score=27.13 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=22.8
Q ss_pred ccccccCcCCCCccceEecCccccccCCCCCCeecCCCCCcccccC
Q 021781 131 QKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 176 (307)
Q Consensus 131 Q~v~~~C~~Cg~~fa~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~ 176 (307)
|...-.||+||... +| ++...+++|+.||-=-.||
T Consensus 24 q~~~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 24 MNEDHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HHSCEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred ccccCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 33344577777642 22 2456799999999877776
No 152
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.98 E-value=39 Score=24.23 Aligned_cols=41 Identities=20% Similarity=0.544 Sum_probs=26.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+..... ++-.=|..+|.+|+ +|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSR--ELFYEDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCC--BCCCSSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcE--EEEeCCccccccCC---------eecCCCCccCC
Confidence 4578889887652221 22234788888664 58888888763
No 153
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.71 E-value=34 Score=23.42 Aligned_cols=28 Identities=32% Similarity=0.936 Sum_probs=15.6
Q ss_pred cceEecCcccc-ccC---CC-----CCCeecCCCCCc
Q 021781 144 MGEYFCESCKL-FDD---DT-----SKKQYHCDGCGI 171 (307)
Q Consensus 144 fa~YfC~~Ckl-~dd---d~-----~k~~yHC~~Cgi 171 (307)
|.+|-|.+|-+ ||. |+ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 56788888865 441 11 112367777763
No 154
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.45 E-value=51 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=11.8
Q ss_pred CCCCCCCCcCccchh
Q 021781 245 QYACPICSKSVCDMS 259 (307)
Q Consensus 245 ~~~CPlCrks~~dm~ 259 (307)
.+.|+.|.+.+....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCCSSCCCCCCTTT
T ss_pred CCcCCCCCcccCCHH
Confidence 378999999987643
No 155
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.29 E-value=43 Score=23.57 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=7.7
Q ss_pred cceEecCccccc
Q 021781 144 MGEYFCESCKLF 155 (307)
Q Consensus 144 fa~YfC~~Ckl~ 155 (307)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 456777777533
No 156
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.24 E-value=30 Score=30.32 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=16.1
Q ss_pred cccCcCCCCc------cceEecCccccc
Q 021781 134 QQVCVNCGVC------MGEYFCESCKLF 155 (307)
Q Consensus 134 ~~~C~~Cg~~------fa~YfC~~Ckl~ 155 (307)
...||+||.. +.|++|.+|.+.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred cccCCccCCCccccCccCCCccCCceeE
Confidence 4679999854 377888888653
No 157
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=23.40 E-value=72 Score=34.53 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=41.3
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCC-CccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 202 EGAMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 202 E~~~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
+-..+..|||=++-|.+ ++++|=| +++=+..|++|+.. +.+||+=|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 33557789999985543 6789998 69999999999986 6799999988763
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.17 E-value=36 Score=25.05 Aligned_cols=41 Identities=15% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
.....|+.|.+.+.. + .+..=|..+|.+|| +|-.|++.+..
T Consensus 23 ~~~~~C~~C~~~I~~--~--~v~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG--P--FLVALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCCS--C--EEEETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEecc--e--EEEECCccccccCC---------ccCCCCCCCCC
Confidence 445678999887642 2 22345888888765 58888888764
No 159
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=22.99 E-value=34 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=17.0
Q ss_pred eeeeCCCCccccccccCcCCCCc
Q 021781 121 QVICSLCGTEQKVQQVCVNCGVC 143 (307)
Q Consensus 121 ~v~C~~C~~eQ~v~~~C~~Cg~~ 143 (307)
.-.|..|...++.. .||+||..
T Consensus 23 ~rAC~~C~~v~~~d-~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSED-RCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSS-SCTTTCCC
T ss_pred HHHHhhCCCccCCC-CCCCCCCC
Confidence 34699999988764 69999863
No 160
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.87 E-value=52 Score=23.98 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=7.4
Q ss_pred ccceecCCccceee
Q 021781 178 DNFFHCNKCRCCYS 191 (307)
Q Consensus 178 e~ffHC~~C~~C~s 191 (307)
+.-|-|..|+.-+.
T Consensus 63 ~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 63 IKPYECNICAKRFM 76 (110)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeeCCCCcchhc
Confidence 34456666665443
No 161
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.61 E-value=32 Score=26.57 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=31.1
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCcC
Q 021781 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (307)
Q Consensus 204 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrks 254 (307)
..+..|.||.+. ++-+.=-.|.-.||..|+.+=+.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999863 211111157788999999775543 35679999854
No 162
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.60 E-value=16 Score=23.82 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.4
Q ss_pred CeecCCCCC
Q 021781 162 KQYHCDGCG 170 (307)
Q Consensus 162 ~~yHC~~Cg 170 (307)
.+|.|+.||
T Consensus 40 k~~~C~~C~ 48 (54)
T 2eps_A 40 RPHKCQVWV 48 (54)
T ss_dssp CCCCSSSSC
T ss_pred CCccCCCCC
Confidence 345555543
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.49 E-value=52 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.699 Sum_probs=25.9
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+.. +.+. .=|..+|.+|+ +|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIK--AMNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS--CCEE--ETTEEECTTTS---------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc--eEEE--ECcccccccCC---------EeCCCCCcCCC
Confidence 4578888887653 2222 34778888765 57788888764
No 164
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=56 Score=23.15 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=25.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+.. +.+. .=|..+|.+|+ +|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLS--AMDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEE--ETTEEECTTTC---------BCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEE--ECCCeEecCcC---------ChhhCCCCCCC
Confidence 4578888887654 2232 34677887654 57888888764
No 165
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.15 E-value=53 Score=22.63 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=24.9
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
...|+.|.+.+.. +.+.. =|..+|.+|+ +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 4578888887653 22333 4778887664 5778888775
No 166
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.10 E-value=54 Score=18.75 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=12.3
Q ss_pred CCCCCCCCcCccchh
Q 021781 245 QYACPICSKSVCDMS 259 (307)
Q Consensus 245 ~~~CPlCrks~~dm~ 259 (307)
.|.|++|.+.+....
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSD 25 (37)
T ss_dssp SBCCTTTCCCBSSHH
T ss_pred CccCCCCCcccCcHH
Confidence 588999999998654
No 167
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.58 E-value=59 Score=18.35 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.6
Q ss_pred CCCCCCCCcCccchhH
Q 021781 245 QYACPICSKSVCDMSK 260 (307)
Q Consensus 245 ~~~CPlCrks~~dm~~ 260 (307)
.+.|++|.+.+.....
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 5889999999986543
No 168
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.45 E-value=16 Score=25.60 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=28.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhc---CCCCCCCCCc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 253 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPlCrk 253 (307)
.+..|.||... +.-+.=-.|.-.||..|+..-+.. +...||.|..
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 35679999863 111111268899999999864432 3567988864
No 169
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.39 E-value=46 Score=24.30 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=7.0
Q ss_pred CCeecCCCCCc
Q 021781 161 KKQYHCDGCGI 171 (307)
Q Consensus 161 k~~yHC~~Cgi 171 (307)
.+...|+.||-
T Consensus 36 ~~~iRC~~CG~ 46 (63)
T 3h0g_L 36 KEVIRCRECGH 46 (63)
T ss_dssp SSCCCCSSSCC
T ss_pred CCceECCCCCc
Confidence 45667777763
No 170
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=60 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=27.5
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
....|+.|.+.+... +.+.. =|..+|.+|| +|-.|++++.
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLA--LDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEE--TTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCC-eEEEE--CCcccccccC---------CcCcCCCCcC
Confidence 356799999876542 23333 4788888764 5888888775
No 171
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.09 E-value=45 Score=23.82 Aligned_cols=38 Identities=18% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
...|+.|.+.+.+ . .+..=|..+|.+|+ +|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~--~--~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--P--FMVAGEFKYHPECF---------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCS--C--CBCCTTCCBCTTSC---------BCTTTCCBCC
T ss_pred CCcCccCCCCcCc--e--EEEECCceeccccC---------CccCCCCccC
Confidence 3468888876652 1 12234777777654 5777887774
No 172
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.99 E-value=41 Score=30.68 Aligned_cols=19 Identities=32% Similarity=1.046 Sum_probs=14.6
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021781 135 QVCVNCGVCM--------GEYFCESCK 153 (307)
Q Consensus 135 ~~C~~Cg~~f--------a~YfC~~Ck 153 (307)
+.|+.||... +.|||+.|.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 5799999887 467777774
No 173
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=56 Score=23.15 Aligned_cols=38 Identities=24% Similarity=0.534 Sum_probs=25.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCcc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~ 256 (307)
...|+.|.+.+... . +..=|..+|.+|+ +|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~---~-v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG---G-VTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC---C-EESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc---E-EEECCchhhhhhC---------CcccCCCcCC
Confidence 45788888866432 2 2345788887664 5778888775
No 174
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.78 E-value=51 Score=21.67 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=5.4
Q ss_pred CCeecCCCCC
Q 021781 161 KKQYHCDGCG 170 (307)
Q Consensus 161 k~~yHC~~Cg 170 (307)
|+-|.|.+||
T Consensus 26 ~qg~~C~~C~ 35 (50)
T 1ptq_A 26 KQGLKCEDCG 35 (50)
T ss_dssp SCEEEETTTC
T ss_pred CccCEeCCCC
Confidence 4555555554
No 175
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.59 E-value=42 Score=30.48 Aligned_cols=19 Identities=37% Similarity=1.100 Sum_probs=15.1
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021781 135 QVCVNCGVCM--------GEYFCESCK 153 (307)
Q Consensus 135 ~~C~~Cg~~f--------a~YfC~~Ck 153 (307)
+.|+.||... +.|||+.|.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5699999887 667888874
No 176
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.47 E-value=65 Score=23.13 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=21.4
Q ss_pred CCCCCcccccccccCCceeEE-c-CCCCccchHHHH
Q 021781 205 MHHDCPVCCEYLFETRQDVIV-L-PCGHTIHKNCLK 238 (307)
Q Consensus 205 ~~~~CPIClE~lf~s~~~v~~-L-pCGH~fH~~Ci~ 238 (307)
....|++|..+..... ..+. - .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQ-DAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCC-CeEecccCccccCchhccC
Confidence 4568999998644332 2322 2 688889999984
No 177
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=47 Score=23.69 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=7.2
Q ss_pred CcCCCCccceEecCccc
Q 021781 137 CVNCGVCMGEYFCESCK 153 (307)
Q Consensus 137 C~~Cg~~fa~YfC~~Ck 153 (307)
|.-|+. .++|.|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 334444 4444444443
No 178
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.34 E-value=58 Score=23.25 Aligned_cols=39 Identities=23% Similarity=0.582 Sum_probs=26.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHhhcCCCCCCCCCcCccc
Q 021781 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (307)
Q Consensus 206 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPlCrks~~d 257 (307)
...|+.|.+.+.. +.+. .=|..+|.+|+ +|-.|++++.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 3579999987653 2233 34788888765 58888888763
No 179
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.24 E-value=66 Score=20.29 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=10.6
Q ss_pred CCCCCCCCcCccchh
Q 021781 245 QYACPICSKSVCDMS 259 (307)
Q Consensus 245 ~~~CPlCrks~~dm~ 259 (307)
.+.||+|.+.+....
T Consensus 32 ~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 32 PYKCEFCEYAAAQKT 46 (57)
T ss_dssp CEECSSSSCEESSHH
T ss_pred CcCCCCCcchhCCHH
Confidence 467888888776543
No 180
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.22 E-value=56 Score=23.95 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=27.8
Q ss_pred cccCceeeeCCCCccccc---c---ccCcCCCCccceEecCcccc
Q 021781 116 RHEVNQVICSLCGTEQKV---Q---QVCVNCGVCMGEYFCESCKL 154 (307)
Q Consensus 116 R~~v~~v~C~~C~~eQ~v---~---~~C~~Cg~~fa~YfC~~Ckl 154 (307)
+..-..|.|..|..+|.+ + -.|..||..+++-.=++-+|
T Consensus 10 nS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 10 RSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp SCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred CCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 333457999999999886 1 35999998887765555554
No 181
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=20.21 E-value=44 Score=30.22 Aligned_cols=19 Identities=32% Similarity=1.027 Sum_probs=14.8
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021781 135 QVCVNCGVCM--------GEYFCESCK 153 (307)
Q Consensus 135 ~~C~~Cg~~f--------a~YfC~~Ck 153 (307)
+.|+.||... +.|||+.|.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 5699999887 667888774
No 182
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.08 E-value=44 Score=30.34 Aligned_cols=19 Identities=26% Similarity=1.058 Sum_probs=14.9
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021781 135 QVCVNCGVCM--------GEYFCESCK 153 (307)
Q Consensus 135 ~~C~~Cg~~f--------a~YfC~~Ck 153 (307)
+.|+.||... +.|||+.|.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5699999887 667888774
No 183
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.05 E-value=73 Score=18.07 Aligned_cols=16 Identities=31% Similarity=0.810 Sum_probs=12.6
Q ss_pred CCCCCCCCcCccchhH
Q 021781 245 QYACPICSKSVCDMSK 260 (307)
Q Consensus 245 ~~~CPlCrks~~dm~~ 260 (307)
.+.|++|.+.+.....
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 3789999999986543
Done!