Query 021782
Match_columns 307
No_of_seqs 167 out of 1301
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13932 stationary phase surv 100.0 1.3E-77 2.8E-82 556.4 27.0 248 11-296 2-254 (257)
2 PRK13935 stationary phase surv 100.0 6.8E-77 1.5E-81 550.5 26.2 244 15-296 1-249 (253)
3 PRK13933 stationary phase surv 100.0 1.9E-76 4.2E-81 548.0 26.8 245 15-296 1-251 (253)
4 COG0496 SurE Predicted acid ph 100.0 1.2E-76 2.5E-81 546.2 23.9 245 15-296 1-251 (252)
5 PRK00346 surE 5'(3')-nucleotid 100.0 7.8E-76 1.7E-80 543.3 26.5 245 15-296 1-249 (250)
6 PRK13931 stationary phase surv 100.0 7.8E-76 1.7E-80 546.2 26.1 251 15-296 1-260 (261)
7 PRK13934 stationary phase surv 100.0 4.7E-73 1E-77 527.3 25.6 235 15-288 1-246 (266)
8 TIGR00087 surE 5'/3'-nucleotid 100.0 4.8E-73 1E-77 523.5 24.4 235 15-282 1-240 (244)
9 PF01975 SurE: Survival protei 100.0 1.5E-66 3.2E-71 466.4 18.2 189 15-210 1-195 (196)
10 PF04007 DUF354: Protein of un 90.9 0.65 1.4E-05 45.4 6.7 103 15-143 1-110 (335)
11 PLN02846 digalactosyldiacylgly 90.3 1.7 3.7E-05 44.3 9.4 53 14-67 4-66 (462)
12 cd03784 GT1_Gtf_like This fami 89.1 0.68 1.5E-05 44.7 5.3 38 15-53 1-39 (401)
13 PF14336 DUF4392: Domain of un 85.9 1.2 2.6E-05 42.6 4.8 108 28-144 63-183 (291)
14 cd03814 GT1_like_2 This family 82.7 19 0.0004 32.8 11.1 29 26-55 16-44 (364)
15 PLN02871 UDP-sulfoquinovose:DA 82.2 11 0.00025 37.5 10.2 41 12-53 56-102 (465)
16 PF13528 Glyco_trans_1_3: Glyc 80.4 4.5 9.7E-05 37.6 6.2 31 101-145 93-123 (318)
17 PRK00726 murG undecaprenyldiph 80.3 11 0.00024 35.6 9.0 37 15-52 2-39 (357)
18 TIGR01426 MGT glycosyltransfer 79.7 3.4 7.5E-05 39.9 5.4 24 30-54 12-35 (392)
19 TIGR00661 MJ1255 conserved hyp 78.3 8.7 0.00019 36.3 7.6 32 100-145 91-122 (321)
20 PRK10307 putative glycosyl tra 76.9 4 8.7E-05 39.6 5.0 36 15-51 1-41 (412)
21 cd03785 GT1_MurG MurG is an N- 76.2 18 0.0004 33.7 9.1 23 29-52 15-37 (350)
22 cd03825 GT1_wcfI_like This fam 76.1 4.5 9.6E-05 37.4 4.8 38 15-53 1-41 (365)
23 cd03802 GT1_AviGT4_like This f 73.5 6.9 0.00015 35.8 5.4 40 15-55 1-49 (335)
24 PF13439 Glyco_transf_4: Glyco 71.8 7.1 0.00015 31.8 4.6 42 17-59 1-46 (177)
25 PF07075 DUF1343: Protein of u 71.8 15 0.00033 36.5 7.5 111 17-144 2-119 (365)
26 PRK09864 putative peptidase; P 61.6 18 0.0004 35.7 5.8 158 3-169 146-340 (356)
27 TIGR01133 murG undecaprenyldip 60.5 51 0.0011 30.7 8.5 36 16-52 2-38 (348)
28 cd03805 GT1_ALG2_like This fam 55.5 14 0.00031 34.9 3.9 37 15-52 1-40 (392)
29 PF13579 Glyco_trans_4_4: Glyc 55.4 12 0.00026 29.8 2.9 97 29-144 6-104 (160)
30 cd03820 GT1_amsD_like This fam 54.8 79 0.0017 28.0 8.4 38 16-54 1-42 (348)
31 PRK12446 undecaprenyldiphospho 53.7 69 0.0015 31.0 8.4 36 98-144 87-122 (352)
32 PF03033 Glyco_transf_28: Glyc 52.5 11 0.00024 30.5 2.3 104 31-145 16-130 (139)
33 PRK06849 hypothetical protein; 47.8 29 0.00064 33.8 4.8 36 13-52 3-38 (389)
34 COG0726 CDA1 Predicted xylanas 47.6 33 0.0007 30.4 4.7 30 14-43 64-93 (267)
35 TIGR01303 IMP_DH_rel_1 IMP deh 46.6 88 0.0019 32.1 8.1 102 28-142 224-334 (475)
36 PRK15405 ethanolamine utilizat 42.7 1.5E+02 0.0033 27.5 8.2 102 28-134 46-201 (217)
37 cd03798 GT1_wlbH_like This fam 42.6 2.3E+02 0.0049 25.2 9.4 30 27-57 17-46 (377)
38 cd06167 LabA_like LabA_like pr 41.9 41 0.00089 27.8 4.2 29 17-51 104-132 (149)
39 COG2065 PyrR Pyrimidine operon 41.3 17 0.00037 32.5 1.8 22 118-139 103-126 (179)
40 COG1817 Uncharacterized protei 40.1 19 0.00042 35.3 2.1 21 122-144 259-279 (346)
41 PF00381 PTS-HPr: PTS HPr comp 39.0 43 0.00093 25.6 3.6 34 15-49 4-37 (84)
42 smart00368 LRR_RI Leucine rich 38.8 31 0.00067 21.1 2.2 26 13-38 2-27 (28)
43 TIGR01918 various_sel_PB selen 38.7 37 0.0008 34.5 3.9 55 86-144 61-115 (431)
44 cd03817 GT1_UGDG_like This fam 38.7 43 0.00094 30.2 4.1 30 24-54 14-43 (374)
45 TIGR01917 gly_red_sel_B glycin 38.6 37 0.0008 34.5 3.9 44 98-144 72-115 (431)
46 PRK15415 propanediol utilizati 37.6 33 0.00072 32.7 3.2 53 82-134 186-241 (266)
47 cd03141 GATase1_Hsp31_like Typ 37.2 46 0.001 30.1 4.0 31 23-54 18-48 (221)
48 TIGR03449 mycothiol_MshA UDP-N 37.1 73 0.0016 30.5 5.6 25 28-53 24-48 (405)
49 PF01205 UPF0029: Uncharacteri 36.6 44 0.00095 27.6 3.4 32 17-49 50-83 (110)
50 PF01936 NYN: NYN domain; Int 34.7 32 0.00069 28.0 2.4 36 17-61 100-135 (146)
51 PLN00414 glycosyltransferase f 34.5 1.9E+02 0.0042 29.3 8.3 27 30-57 21-47 (446)
52 PF13477 Glyco_trans_4_2: Glyc 34.3 57 0.0012 26.1 3.8 33 17-53 3-35 (139)
53 PRK06843 inosine 5-monophospha 34.0 1.3E+02 0.0028 30.4 6.9 103 30-143 154-263 (404)
54 PRK11249 katE hydroperoxidase 33.2 1.4E+02 0.0031 32.6 7.5 40 12-52 595-634 (752)
55 PLN02208 glycosyltransferase f 32.7 1.4E+02 0.0031 30.1 7.1 94 30-143 21-134 (442)
56 PLN00016 RNA-binding protein; 32.2 60 0.0013 31.4 4.2 40 12-52 50-90 (378)
57 cd01482 vWA_collagen_alphaI-XI 31.8 73 0.0016 26.8 4.2 31 16-49 107-137 (164)
58 COG1926 Predicted phosphoribos 30.7 58 0.0013 30.2 3.5 43 15-58 125-168 (220)
59 cd03791 GT1_Glycogen_synthase_ 30.5 48 0.001 32.8 3.2 25 30-55 22-46 (476)
60 cd03796 GT1_PIG-A_like This fa 29.8 72 0.0016 30.8 4.3 26 26-52 16-41 (398)
61 PF08323 Glyco_transf_5: Starc 29.5 49 0.0011 30.4 2.9 22 30-52 22-43 (245)
62 PHA03392 egt ecdysteroid UDP-g 29.3 46 0.001 34.2 3.0 40 13-53 19-60 (507)
63 COG0300 DltE Short-chain dehyd 29.3 68 0.0015 30.5 3.9 38 11-53 3-41 (265)
64 TIGR03568 NeuC_NnaA UDP-N-acet 28.8 2.5E+02 0.0055 27.3 7.9 52 84-145 72-126 (365)
65 PRK12767 carbamoyl phosphate s 28.7 79 0.0017 29.6 4.3 33 15-52 2-35 (326)
66 PF07355 GRDB: Glycine/sarcosi 28.7 68 0.0015 31.8 3.8 53 86-142 65-117 (349)
67 cd03794 GT1_wbuB_like This fam 28.7 88 0.0019 28.2 4.4 28 27-55 17-44 (394)
68 cd03816 GT1_ALG1_like This fam 28.6 61 0.0013 31.8 3.6 36 14-51 5-40 (415)
69 TIGR03590 PseG pseudaminic aci 28.3 73 0.0016 29.8 3.9 19 127-145 251-269 (279)
70 COG1091 RfbD dTDP-4-dehydrorha 28.0 2.6E+02 0.0057 26.8 7.6 61 82-146 34-102 (281)
71 PF10841 DUF2644: Protein of u 27.9 23 0.00049 26.3 0.3 21 18-38 3-24 (60)
72 PRK08703 short chain dehydroge 27.6 1E+02 0.0023 27.1 4.6 39 9-52 1-40 (239)
73 COG3199 Predicted inorganic po 27.5 3.6E+02 0.0078 26.9 8.5 126 1-146 1-133 (355)
74 PF06722 DUF1205: Protein of u 27.4 93 0.002 24.9 3.8 48 11-59 37-91 (97)
75 PRK12827 short chain dehydroge 27.1 1.4E+02 0.003 26.1 5.3 34 12-50 4-38 (249)
76 PRK14697 bifunctional 5'-methy 25.8 2.8E+02 0.0061 25.2 7.2 47 128-174 176-227 (233)
77 PRK05784 phosphoribosylamine-- 25.7 5.9E+02 0.013 26.1 10.2 96 15-143 1-100 (486)
78 PRK08334 translation initiatio 25.6 94 0.002 30.9 4.2 43 101-143 237-279 (356)
79 PRK09288 purT phosphoribosylgl 25.6 1.4E+02 0.0031 28.8 5.5 47 1-54 1-47 (395)
80 PRK12825 fabG 3-ketoacyl-(acyl 25.6 1.1E+02 0.0024 26.5 4.4 88 9-108 1-90 (249)
81 PF14258 DUF4350: Domain of un 25.1 1.2E+02 0.0026 22.0 3.8 33 15-49 36-70 (70)
82 PRK12311 rpsB 30S ribosomal pr 24.5 1E+02 0.0022 30.2 4.2 32 100-143 150-182 (326)
83 TIGR01133 murG undecaprenyldip 24.5 80 0.0017 29.3 3.4 22 122-144 257-278 (348)
84 TIGR00045 glycerate kinase. Th 24.4 4.4E+02 0.0096 26.3 8.7 42 101-144 282-323 (375)
85 cd03808 GT1_cap1E_like This fa 24.4 75 0.0016 28.3 3.1 37 18-55 4-40 (359)
86 PF08497 Radical_SAM_N: Radica 23.7 1E+02 0.0023 29.9 4.0 45 1-52 9-56 (302)
87 PF00201 UDPGT: UDP-glucoronos 23.5 34 0.00073 34.2 0.7 35 17-52 3-37 (500)
88 PRK05772 translation initiatio 23.4 2.6E+02 0.0057 27.8 6.9 97 31-143 190-287 (363)
89 PF04230 PS_pyruv_trans: Polys 23.4 68 0.0015 27.9 2.6 22 124-145 264-285 (286)
90 TIGR02884 spore_pdaA delta-lac 23.2 91 0.002 28.2 3.4 32 11-42 33-64 (224)
91 PRK00025 lpxB lipid-A-disaccha 22.9 88 0.0019 29.7 3.4 20 122-143 268-287 (380)
92 PLN02695 GDP-D-mannose-3',5'-e 22.8 1.4E+02 0.003 29.0 4.8 34 12-49 19-52 (370)
93 TIGR01003 PTS_HPr_family Phosp 22.8 93 0.002 23.8 2.9 35 14-49 3-37 (82)
94 PRK00654 glgA glycogen synthas 22.5 85 0.0018 31.4 3.4 24 30-54 23-46 (466)
95 cd04962 GT1_like_5 This family 22.4 1.5E+02 0.0033 27.4 4.9 33 19-52 7-39 (371)
96 cd01476 VWA_integrin_invertebr 22.4 1.4E+02 0.003 24.8 4.2 32 16-50 107-139 (163)
97 COG2110 Predicted phosphatase 22.3 1.7E+02 0.0038 26.2 4.9 55 114-170 92-146 (179)
98 cd03132 GATase1_catalase Type 22.1 2.7E+02 0.0058 22.7 5.8 35 17-54 6-40 (142)
99 smart00775 LNS2 LNS2 domain. T 22.1 93 0.002 26.7 3.1 18 24-41 26-43 (157)
100 PRK10342 glycerate kinase I; P 22.0 5.5E+02 0.012 25.8 8.8 40 101-144 283-324 (381)
101 PRK06036 translation initiatio 21.9 3.1E+02 0.0068 27.0 7.0 96 30-143 169-266 (339)
102 PRK06714 S-adenosylhomocystein 21.7 3.5E+02 0.0076 24.8 7.0 48 127-174 176-228 (236)
103 PRK09922 UDP-D-galactose:(gluc 21.6 1.1E+02 0.0024 29.0 3.8 38 15-53 1-44 (359)
104 PRK13782 phosphocarrier protei 21.6 1.1E+02 0.0023 23.5 3.0 34 15-49 4-37 (82)
105 PF11805 DUF3326: Protein of u 21.6 76 0.0016 31.2 2.6 56 82-142 229-293 (340)
106 PRK00955 hypothetical protein; 21.5 1E+02 0.0022 32.9 3.8 42 1-49 6-50 (620)
107 PRK13609 diacylglycerol glucos 21.4 1.4E+02 0.003 28.5 4.5 42 13-55 3-46 (380)
108 cd01475 vWA_Matrilin VWA_Matri 21.1 1.4E+02 0.003 26.7 4.2 30 17-49 113-142 (224)
109 TIGR02095 glgA glycogen/starch 21.1 95 0.0021 30.9 3.4 24 30-54 23-46 (473)
110 cd03801 GT1_YqgM_like This fam 20.6 1.3E+02 0.0028 26.6 3.9 29 27-56 17-45 (374)
111 cd03823 GT1_ExpE7_like This fa 20.3 1.2E+02 0.0026 27.2 3.6 27 29-56 20-46 (359)
112 PRK02947 hypothetical protein; 20.2 4.3E+02 0.0094 24.3 7.3 22 124-145 121-142 (246)
113 PRK11780 isoprenoid biosynthes 20.2 1.5E+02 0.0032 27.1 4.2 36 17-53 6-44 (217)
114 cd03818 GT1_ExpC_like This fam 20.2 1.6E+02 0.0034 28.3 4.6 25 29-54 12-36 (396)
115 PRK01911 ppnK inorganic polyph 20.1 2.8E+02 0.006 26.6 6.1 34 101-145 63-97 (292)
No 1
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.3e-77 Score=556.37 Aligned_cols=248 Identities=28% Similarity=0.434 Sum_probs=215.2
Q ss_pred CCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHH
Q 021782 11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADC 89 (307)
Q Consensus 11 ~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~-g~~~~~v~GTPaDc 89 (307)
..++|||||||||||+||||++|+++|++.| +|+||||++||||+||+||+++||++++++.+ +..+|+|+||||||
T Consensus 2 ~~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC 79 (257)
T PRK13932 2 QDKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC 79 (257)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence 3568999999999999999999999999987 89999999999999999999999999998744 45589999999999
Q ss_pred HHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHH
Q 021782 90 ASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA 169 (307)
Q Consensus 90 V~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~ 169 (307)
|++||++ +++.+|||||||||+|.|+|.||+||||||||+||+++||||||||+... ...+|+.|++++.+++++
T Consensus 80 V~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~ 154 (257)
T PRK13932 80 IKVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARK 154 (257)
T ss_pred HHHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHH
Confidence 9999987 56788999999999999999999999999999999999999999998531 123799999999988887
Q ss_pred HHHHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCC
Q 021782 170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLE 248 (307)
Q Consensus 170 l~~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~ 248 (307)
++ ...+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .||+++
T Consensus 155 l~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~--------------------------~dp~g~ 204 (257)
T PRK13932 155 VL----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIER--------------------------HDMYGN 204 (257)
T ss_pred HH----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEe--------------------------ECcCCC
Confidence 65 456899999999999987 46899999999999998877654 245667
Q ss_pred cccceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 249 EDLLFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
.|||+.+.... ...+++||++++++|||| ||| ++|+++.+++|++|.
T Consensus 205 ~yywl~~~~~~-~~~~~~tD~~al~~GyISvTPL~~dlT~~~~l~~l~~~~ 254 (257)
T PRK13932 205 PYYWLNGTLQL-LDDSLTQDEYAVRHNYVAVTPLSCDLTNHDFLSSLEQWK 254 (257)
T ss_pred eEEEECCCccC-CCCCCCChHHHHHCCcEEEecCCcCCcChHHHHHHHhhh
Confidence 77888864332 123679999999999999 996 788888888888775
No 2
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=6.8e-77 Score=550.49 Aligned_cols=244 Identities=37% Similarity=0.502 Sum_probs=212.5
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (307)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++|+++++++. ++..+|+|+|||||||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 79999999999999999999999874 49999999999999999999999999999864 2456899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 021782 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE 173 (307)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~ 173 (307)
|++ +++++|||||||||+|.|+|.+|+||||||||+||+++||||||||+... ...+|+.+++++.++++++.
T Consensus 79 l~~-~~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~-- 151 (253)
T PRK13935 79 YDV-IMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD-- 151 (253)
T ss_pred HHh-hccCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH--
Confidence 997 56788999999999999999999999999999999999999999998421 12379999999998888765
Q ss_pred HHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCcccc
Q 021782 174 IRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLL 252 (307)
Q Consensus 174 ~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~~~ 252 (307)
+..+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .|++++.|||
T Consensus 152 --~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~~~~~~~~~~~--------------------------~dp~g~~~yw 203 (253)
T PRK13935 152 --FSLLPPFTALNINVPSVPYGEIKGWKLTRQSRRRYNDYFEER--------------------------VDPFGNKYYW 203 (253)
T ss_pred --hcCCCCCcEEEEEeCcCChhhcCCeEEeeCCCcccCCceEEE--------------------------ECCCCCeEEE
Confidence 456899999999999986 46899999999999999887664 2356677788
Q ss_pred eeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 253 FRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 253 ~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
+.+.... ...+++||++++++|||| ||| ++|+++.++.|++|+
T Consensus 204 ~~~~~~~-~~~~~~tD~~al~~G~ISVTPL~~d~T~~~~l~~l~~~~ 249 (253)
T PRK13935 204 MMGEIIE-DDPDDDVDYKAVREGYVSVTPIHVFLTNEECLKKLKEVY 249 (253)
T ss_pred ECCCccC-CCCCCCchHHHHHCCcEEEecCCcCCcCHHHHHHHHHHh
Confidence 8865432 123679999999999999 996 789998888898886
No 3
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.9e-76 Score=547.96 Aligned_cols=245 Identities=31% Similarity=0.491 Sum_probs=212.4
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCC--CCeeEEecCChHHHHHH
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD--GVTAYAVSGTPADCASL 92 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~--g~~~~~v~GTPaDcV~~ 92 (307)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++||++++++.+ +..+|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 78999999999999999999999874 599999999999999999999999999998744 33589999999999999
Q ss_pred hhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHHHHH
Q 021782 93 GVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 172 (307)
Q Consensus 93 al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~ 172 (307)
||++ +++.+|||||||||+|.|+|.||+||||||||+||+++||||||||+.... ....+|+.|++++.+++++++
T Consensus 79 al~~-l~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~--~~~~~~~~a~~~~~~lv~~l~- 154 (253)
T PRK13933 79 ALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKK--GKDENYKIAAKYALEVLNILK- 154 (253)
T ss_pred HHHH-hcCCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCC--CCcccHHHHHHHHHHHHHHHH-
Confidence 9997 567899999999999999999999999999999999999999999985321 112369999999999888765
Q ss_pred HHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCccc
Q 021782 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDL 251 (307)
Q Consensus 173 ~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~~ 251 (307)
+..+|++.+||||||.++ .+.+|+|+||||++.|.+.++++. ||+++.||
T Consensus 155 ---~~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~r~y~~~~~~~~--------------------------dp~g~~~y 205 (253)
T PRK13933 155 ---KEDLKNDVVLNLNVPFCSEEEIKGIKVCKVGNKTFNTYFSEEI--------------------------DEEGNKVY 205 (253)
T ss_pred ---hcCCCCCcEEEEecCCCchhhcCCeEEEeCCccccCCceEEEE--------------------------CCCCCeEE
Confidence 356899999999999987 578999999999999988777642 46677788
Q ss_pred ceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 252 LFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 252 ~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
|+.+.... ..+++||++++++|||| ||| ++|+++.++.|++|+
T Consensus 206 wl~g~~~~--~~~~~tD~~a~~~g~iSVTPl~~dlT~~~~l~~l~~~~ 251 (253)
T PRK13933 206 KLEGDINK--DIYEGTDVYYIRQGYVTLTPLHYDLTNFKILEEVEKLF 251 (253)
T ss_pred EEcCCccC--CCCCCCcHHHHHCCcEEEEccCcCCcChHHHHHHHHHh
Confidence 88865332 23579999999999999 996 788888888888875
No 4
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=1.2e-76 Score=546.19 Aligned_cols=245 Identities=38% Similarity=0.564 Sum_probs=211.1
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (307)
|||||||||||+||||++|+++|+. + +||+||||++||||+||+||+++|||+++++. ..|+|+|||+|||++||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~~-~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALRE-G-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHhh-C-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 8999999999999999999999994 3 69999999999999999999999999999863 57999999999999999
Q ss_pred hccCCCCC-CcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCC-CCCCccHHHHHHHHHHHHHHHH
Q 021782 95 SQALFPSV-PDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILA 172 (307)
Q Consensus 95 ~~~l~~~~-PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~-~~~~~~~~aa~~~~~li~~l~~ 172 (307)
+. +++++ |||||||||.|.|+|.|++|||||||||||+++||||||+|+...... ....+|+.|++++..++++++.
T Consensus 76 ~~-l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 76 NE-LLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALLA 154 (252)
T ss_pred HH-hccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHHh
Confidence 87 66654 999999999999999999999999999999999999999999754311 1224799999999988888764
Q ss_pred HHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCccc
Q 021782 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDL 251 (307)
Q Consensus 173 ~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~~ 251 (307)
..+|...+||||||+++ .+.+|+++||+|++.|...+.++ .||+|..||
T Consensus 155 ----~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~~~~~~~~~~r--------------------------~dprG~~yy 204 (252)
T COG0496 155 ----NPLPPDTLLNVNIPNLPLEEIKGIRVTRLGRRRYAEPVEER--------------------------TDPRGEPYY 204 (252)
T ss_pred ----CCCCCCcEEEEeCCCCCccccCcEEEEechhhhccCcccee--------------------------eCCCCCEEE
Confidence 57888999999999986 57999999999999998776654 346777788
Q ss_pred ceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 252 LFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 252 ~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
|+.+.... .+.+++||++++++|||| ||| ++|.++..+.+++|+
T Consensus 205 W~~~~~~~-~~~~~gtD~~a~~~g~IsITPl~~dlt~~~~~~~l~~~l 251 (252)
T COG0496 205 WIGPGGLA-EDAEEGTDFHAVREGYISITPLQLDLTAYEALESLKSWL 251 (252)
T ss_pred EecCCCcc-ccCCCCchHHHHHcCCeeccccccCchHHHHHHHHHHhh
Confidence 88753222 235899999999999999 884 677777777888776
No 5
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=7.8e-76 Score=543.29 Aligned_cols=245 Identities=33% Similarity=0.510 Sum_probs=211.1
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (307)
|||||||||||+||||++|+++|++.| +|+||||++||||+||+||+++|+++++++ + ..|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~~--~V~VvAP~~~qSg~g~ait~~~pl~~~~~~-~--~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALRELA--DVTVVAPDRERSGASHSLTLTRPLRVEKVD-N--GFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhCC--CEEEEeCCCCCcCCcccccCCCCeEEEEec-C--CeEEECCcHHHHHHHHH
Confidence 789999999999999999999999874 999999999999999999999999999985 2 35999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 021782 95 SQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (307)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (307)
++ +++++|||||||||+|.|+|.||+||||||||+||+++||||||||+..........+|+.+++++.++++++++
T Consensus 76 ~~-l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~-- 152 (250)
T PRK00346 76 NG-LLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE-- 152 (250)
T ss_pred Hh-hccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh--
Confidence 97 567799999999999999999999999999999999999999999985421111223699999999998887764
Q ss_pred HhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCcccce
Q 021782 175 RNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLF 253 (307)
Q Consensus 175 ~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~~~~ 253 (307)
..+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .|++++.|||+
T Consensus 153 --~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~~~~~~~~~~--------------------------~d~~g~~~yw~ 204 (250)
T PRK00346 153 --KPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKRHYAEEVIKR--------------------------VDPRGRPYYWI 204 (250)
T ss_pred --cCCCCCcEEEEEeCCCCcccCCCEEEEeCCCccccCceEEE--------------------------ECcCCCeEEEE
Confidence 56899999999999986 57899999999999998877654 23567778888
Q ss_pred eeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 254 RREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 254 ~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
.++... ...+++||++++++|||| ||| ++|+++.++.|++|+
T Consensus 205 ~~~~~~-~~~~~~tD~~al~~g~isvTPl~~d~t~~~~l~~l~~~~ 249 (250)
T PRK00346 205 GGAGLE-EDAGEGTDFHAVAEGYVSITPLQLDLTAYAALDELKDWL 249 (250)
T ss_pred CCCccC-CCCCCCChHHHHHCCcEEEEecCcCCcChHHHHHHHHhh
Confidence 865433 123679999999999999 996 788888888888875
No 6
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=7.8e-76 Score=546.24 Aligned_cols=251 Identities=29% Similarity=0.413 Sum_probs=207.6
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcC--CccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHH
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASL 92 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g--~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~ 92 (307)
|||||||||||+||||++|+++|+++. .++|+||||++||||+||+||+++||++++++ + ..|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~-~--~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG-P--RRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC-C--CeEEEcCchHHHHHH
Confidence 789999999999999999999999851 13999999999999999999999999999975 2 359999999999999
Q ss_pred hhhccCCC-CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCC-CCCCccHHHHHHHHHHHHHH
Q 021782 93 GVSQALFP-SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAI 170 (307)
Q Consensus 93 al~~~l~~-~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~-~~~~~~~~aa~~~~~li~~l 170 (307)
||++ +++ .+|||||||||+|.|+|.||+||||||||+||+++||||||||+.+.... ....+|+.|++++.++++++
T Consensus 78 al~~-~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYD-VMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHH-hcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 9997 566 78999999999999999999999999999999999999999998642100 01235999999999999887
Q ss_pred HHHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccc-cceeEeeeccCCceeeecccccCcccccccccCCCCCC
Q 021782 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFK-MGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLE 248 (307)
Q Consensus 171 ~~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~-~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~ 248 (307)
++....+..|.+++||||||.++ .+.+|+|+||||++.|. +.++++ .|++++
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~--------------------------~d~~g~ 210 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGFREGTRFGVEPH--------------------------MSPSGR 210 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCcccccCCceEEE--------------------------ECCCCC
Confidence 65321111233589999999987 46899999999999987 666653 235667
Q ss_pred cccceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782 249 EDLLFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL 296 (307)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l 296 (307)
.|||+.+.... ...+++||++++++|||| ||| ++|+++.++.|+.||
T Consensus 211 ~~yw~~~~~~~-~~~~~~tD~~a~~~G~iSVTPl~~d~t~~~~l~~l~~~~ 260 (261)
T PRK13931 211 RFLWIKGGAQQ-VPTAPGTDAAVNLDGYISVTPMRADLTAHDRLAELEALL 260 (261)
T ss_pred eEEEEcCCCcC-CCCCCCCHHHHHHCCcEEEeccccCCcChHHHHHHHHhh
Confidence 77888764333 234779999999999999 996 788888888888876
No 7
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=4.7e-73 Score=527.31 Aligned_cols=235 Identities=29% Similarity=0.419 Sum_probs=198.0
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (307)
|||||||||||+||||++|+++|+++| +|+||||++||||+||+||+++||++++++.++..+|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 789999999999999999999999887 899999999999999999999999999987546678999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCccccc-ccchhhHHHHHHHHHcCCCEEEEEeecCCCC---CCCCccHHHHHHHHHHHHHH
Q 021782 95 SQALFPSVPDLVISGINMGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVGGK---SNVNDYTLAAEACLPIINAI 170 (307)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~NlG~d-v~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~---~~~~~~~~aa~~~~~li~~l 170 (307)
.+ + +.+|||||||||+|.|+|.+ ++||||||||+||+++||||||||+...... ....+|+.+++++.++++++
T Consensus 79 ~~-l-~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~l 156 (266)
T PRK13934 79 YG-L-GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEYV 156 (266)
T ss_pred Hh-c-cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHHH
Confidence 86 5 77899999999999999999 8999999999999999999999998532101 01124888888888777765
Q ss_pred HHHHHhcCCCCcc-eEeecCCCCCCCCCCe--EEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCC
Q 021782 171 LAEIRNQTYPERC-FLNIDLPTDIPNNKGY--KLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPL 247 (307)
Q Consensus 171 ~~~~~~~~lp~~~-~lNVN~P~~~~~~~g~--~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~ 247 (307)
+ +..+|+++ +||||||.++. +|+ |+||||++.|.+.++++ .||++
T Consensus 157 ~----~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~r~y~~~~~~~--------------------------~dp~g 204 (266)
T PRK13934 157 L----KRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAKLRFAQQVERR--------------------------VDPRG 204 (266)
T ss_pred H----hcCCCCCCcEEEEecCCCCC--CCCceEEecCCccccCCceEEE--------------------------ECCCC
Confidence 4 46689986 99999998764 788 99999999998877764 23566
Q ss_pred CcccceeeeccCCCCCCCCCHHHHH-HcCCCC-CCC--CCCchhh
Q 021782 248 EEDLLFRREVRGAHIADPDTDWQFL-REGYIW-SPY--STSKIGC 288 (307)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~tD~~al-~~GyIS-TPl--~~~~~~~ 288 (307)
+.|||+.+.... .+++||++++ ++|||| ||| ++|++|-
T Consensus 205 ~~~ywl~~~~~~---~~~~tD~~a~~~~GyISVTPL~~dlT~~~~ 246 (266)
T PRK13934 205 RAYYWLYGTPLE---PEPGTDVYVVLKEGNIAITPLTLNLNALDG 246 (266)
T ss_pred CeEEEECCCccC---CCCCCcHHHHHHCCeEEEecccccCccCcc
Confidence 777888864332 3779999955 999999 885 5666553
No 8
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=4.8e-73 Score=523.46 Aligned_cols=235 Identities=37% Similarity=0.607 Sum_probs=199.4
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (307)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++. ++..+|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 799999999999999999999999987 9999999999999999999999999999864 3446899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCC--CCCCccHHHHHHHHHHHHHHH
Q 021782 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK--SNVNDYTLAAEACLPIINAIL 171 (307)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~--~~~~~~~~aa~~~~~li~~l~ 171 (307)
|++ +++++|||||||||+|.|+|.+|+||||||||+||+++||||||||+...... ....+|+.+++++.+++++++
T Consensus 79 l~~-l~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l~ 157 (244)
T TIGR00087 79 INE-LMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLL 157 (244)
T ss_pred HHH-hccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHHH
Confidence 997 67889999999999999999999999999999999999999999998542211 112369999999998888766
Q ss_pred HHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCcc
Q 021782 172 AEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEED 250 (307)
Q Consensus 172 ~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~ 250 (307)
+..+|++++||||||.++ .+.+|+++||||++.|.+.++++. |++++.|
T Consensus 158 ----~~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~~~~~~~~~~~~--------------------------d~~g~~~ 207 (244)
T TIGR00087 158 ----KNGLPGGDLLNVNVPLVPSIQNTGIRITRLGRRMYATSVEERT--------------------------DPRGRSY 207 (244)
T ss_pred ----hcCCCCCcEEEEEeCCCCcccCCCEEEEECCccccccCceEeE--------------------------CCCCCeE
Confidence 356888999999999987 468999999999999987776642 3455667
Q ss_pred cceeeeccCCCCCCCCCHHHHHHcCCCC-CCCC
Q 021782 251 LLFRREVRGAHIADPDTDWQFLREGYIW-SPYS 282 (307)
Q Consensus 251 ~~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl~ 282 (307)
||+.+........+++||++++++|||| |||+
T Consensus 208 ~w~~~~~~~~~~~~~~tD~~~~~~g~iSvTPl~ 240 (244)
T TIGR00087 208 YWIGGDPGARCDREPGTDVDAIRSGYISITPLK 240 (244)
T ss_pred EEeCCCccccCCCCCCCHHHHHhCCcEEEeccc
Confidence 7777543111223678999999999999 6653
No 9
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=1.5e-66 Score=466.41 Aligned_cols=189 Identities=44% Similarity=0.713 Sum_probs=154.6
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeecc----CCCCeeEEecCChHHHH
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD----FDGVTAYAVSGTPADCA 90 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~----~~g~~~~~v~GTPaDcV 90 (307)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|+++.+.. ..+..+|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 899999999999999999999998887 7999999999999999999999999997764 24567999999999999
Q ss_pred HHhhhccCCCC-CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHH
Q 021782 91 SLGVSQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA 169 (307)
Q Consensus 91 ~~al~~~l~~~-~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~ 169 (307)
++||++ ++++ +|||||||||+|.|+|.+++||||||||+||+++||||||||+.... .....+|+.+++++.+++++
T Consensus 80 ~~al~~-~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~-~~~~~~~~~aa~~~~~~i~~ 157 (196)
T PF01975_consen 80 KLALDG-LLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDS-ESKDPDFETAARFAVKLIEK 157 (196)
T ss_dssp HHHHHC-TSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS-T-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccC-CCcHHHHHHHHHHHHHHHHH
Confidence 999997 4664 59999999999999999999999999999999999999999998643 11234799999998888887
Q ss_pred HHHHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccc
Q 021782 170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFK 210 (307)
Q Consensus 170 l~~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~ 210 (307)
++ +..+|++++||||||.++ .+.+|+|+||+|+++|+
T Consensus 158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~y~ 195 (196)
T PF01975_consen 158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRRYK 195 (196)
T ss_dssp HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCSCE
T ss_pred Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcceeC
Confidence 66 456799999999999986 57899999999999886
No 10
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=90.86 E-value=0.65 Score=45.39 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=63.0
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEE-ecCChHHHHHHh
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYA-VSGTPADCASLG 93 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~-v~GTPaDcV~~a 93 (307)
|+|++.=..=-+..-.+.+.+.|.+.| |+|.|.|-+.++ ...+- +...++ . ..+. -.+|+.+=....
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~~-----~~~LL---~~yg~~--y-~~iG~~g~~~~~Kl~~~ 68 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKDE-----TEELL---DLYGID--Y-IVIGKHGDSLYGKLLES 68 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccch-----HHHHH---HHcCCC--e-EEEcCCCCCHHHHHHHH
Confidence 667776555555567788999999999 899999987532 11111 111111 0 0010 114444433333
Q ss_pred hhc------cCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 94 VSQ------ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 94 l~~------~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
+.. .+...+||++||+- -+.|++-|..+|+|+|+|.
T Consensus 69 ~~R~~~l~~~~~~~~pDv~is~~--------------s~~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 69 IERQYKLLKLIKKFKPDVAISFG--------------SPEAARVAFGLGIPSIVFN 110 (335)
T ss_pred HHHHHHHHHHHHhhCCCEEEecC--------------cHHHHHHHHHhCCCeEEEe
Confidence 221 12235899999873 4588999999999999997
No 11
>PLN02846 digalactosyldiacylglycerol synthase
Probab=90.30 E-value=1.7 Score=44.32 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCeEEEeCC------CCCCCccHHHHHHHHHhcCCccEEEEecCCCCC----cCcccccCCCCe
Q 021782 14 KPTIMVTND------DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKS----AVSHSITWRHPI 67 (307)
Q Consensus 14 ~~~ILlTND------DGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~S----g~g~siT~~~pl 67 (307)
+|||+|.-| +|. |-.+..+++.|.+.|+|+|+||||..... -.++.+++..|-
T Consensus 4 ~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~ 66 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPS 66 (462)
T ss_pred CCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCch
Confidence 566666655 344 23556677799999966999999976432 234456666553
No 12
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.07 E-value=0.68 Score=44.70 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred CeEEEeCCCCC-CCccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 15 PTIMVTNDDGI-DAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 15 ~~ILlTNDDGi-~a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
||||++.=-+. +.--+.+|+++|++.| |+|+++++..-
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEF 39 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhH
Confidence 67887653322 1223568999999999 89999999863
No 13
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=85.86 E-value=1.2 Score=42.63 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEE
Q 021782 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVI 107 (307)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVv 107 (307)
||--+|+++|+.+| .+|++|......+............-....+. . .+.+.|-+-...-....+...+||++|
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~d~lI 136 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVRAAGLQGVDKVEI--P---PFFPDDFAQAFLEADGLLKEPRPDLLI 136 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHHHHhhCccccccc--c---cccccchhhhHHHHhhccccCCCCEEE
Confidence 69999999999999 69999998887777665543211100000000 0 022333333333333323345899999
Q ss_pred e----cCC--------CCCcccccc-cchhhHHHHHHHHHcCCCEEEEEe
Q 021782 108 S----GIN--------MGSNCGYHV-VYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 108 S----GIN--------~G~NlG~dv-~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
| |.| +|.|+...+ -+..-+-.|.+ .|||.||+.=
T Consensus 137 aIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~---~gi~tigIGD 183 (291)
T PF14336_consen 137 AIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKE---PGIPTIGIGD 183 (291)
T ss_pred EeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhc---CCCCEEEECC
Confidence 8 665 344443211 22333344444 7999999983
No 14
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.72 E-value=19 Score=32.77 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 26 DAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 26 ~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
....+..|+++|.+.| |+|.++.+.....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (364)
T cd03814 16 VVRTLQRLVEHLRARG-HEVLVIAPGPFRE 44 (364)
T ss_pred eehHHHHHHHHHHHCC-CEEEEEeCCchhh
Confidence 3457899999999999 8999999987543
No 15
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=82.16 E-value=11 Score=37.46 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCeEEEeCC-CCCC-----CccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 12 DHKPTIMVTND-DGID-----APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 12 ~~~~~ILlTND-DGi~-----a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
.++|||++..+ ..+. ..-+..|++.|++.| |+|+|+++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 56799998865 2221 124678889999999 89999998754
No 16
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=80.36 E-value=4.5 Score=37.61 Aligned_cols=31 Identities=39% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEee
Q 021782 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 101 ~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (307)
.+||||||=... - ++..|...|+|+|.++..
T Consensus 93 ~~pDlVIsD~~~-----------~---~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 93 FRPDLVISDFYP-----------L---AALAARRAGIPVIVISNQ 123 (318)
T ss_pred cCCCEEEEcChH-----------H---HHHHHHhcCCCEEEEEeh
Confidence 589999985322 1 346667899999999964
No 17
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=80.31 E-value=11 Score=35.65 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.3
Q ss_pred CeEEEe-CCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 15 PTIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 15 ~~ILlT-NDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
||||++ +=-|-+---...|++.|++.| |+|.|+.+..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 788887 545644445568999999999 8999998854
No 18
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=79.75 E-value=3.4 Score=39.94 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
+-.|+++|++.| |+|+++.|...+
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 346999999999 899999997764
No 19
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=78.33 E-value=8.7 Score=36.35 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEee
Q 021782 100 PSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 100 ~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (307)
..+||+|||-... .+.+.|...|||+|.+.-.
T Consensus 91 ~~~pDlVi~d~~~--------------~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 91 EYNPDLIISDFEY--------------STVVAAKLLKIPVICISNQ 122 (321)
T ss_pred hcCCCEEEECCch--------------HHHHHHHhcCCCEEEEecc
Confidence 3589999987332 2266777899999999853
No 20
>PRK10307 putative glycosyl transferase; Provisional
Probab=76.93 E-value=4 Score=39.56 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=28.5
Q ss_pred CeEEEeCCCCCCCc-----cHHHHHHHHHhcCCccEEEEecC
Q 021782 15 PTIMVTNDDGIDAP-----GLRSLVRVLVSTNRYTVQVCAPD 51 (307)
Q Consensus 15 ~~ILlTNDDGi~a~-----Gi~aL~~aL~~~g~~~V~VVAP~ 51 (307)
||||+.++--..-. -+..|++.|.+.| |+|+|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 78888887643222 3788999999999 899999976
No 21
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=76.19 E-value=18 Score=33.69 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.5
Q ss_pred cHHHHHHHHHhcCCccEEEEecCC
Q 021782 29 GLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
.+..|+++|.+.| |+|.|+++..
T Consensus 15 ~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 15 PALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred HHHHHHHHHHhCC-CEEEEEECCC
Confidence 4568999999999 8999998864
No 22
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=76.15 E-value=4.5 Score=37.37 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.6
Q ss_pred CeEEEeCCCCC-C--CccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 15 PTIMVTNDDGI-D--APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 15 ~~ILlTNDDGi-~--a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
||||+.|+... . ..-...|+++|.+.| |+|+|+++...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 78888876532 2 234678899999999 89999998765
No 23
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=73.54 E-value=6.9 Score=35.80 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.7
Q ss_pred CeEEEeCCCCCC----Ccc-----HHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 15 PTIMVTNDDGID----APG-----LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 15 ~~ILlTNDDGi~----a~G-----i~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
||||+..+--+. .-| +..|+++|.+.| |+|+|+.|....+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~ 49 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSKT 49 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCCc
Confidence 789998876432 222 788999999999 8999999877643
No 24
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=71.77 E-value=7.1 Score=31.78 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEeCCCCCCCccH----HHHHHHHHhcCCccEEEEecCCCCCcCcc
Q 021782 17 IMVTNDDGIDAPGL----RSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (307)
Q Consensus 17 ILlTNDDGi~a~Gi----~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~ 59 (307)
|||+|.-....-|. ..|+++|.+.| |+|+|++|..+..-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 67888877776664 67889999999 89999998876655444
No 25
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.76 E-value=15 Score=36.49 Aligned_cols=111 Identities=25% Similarity=0.363 Sum_probs=74.7
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhc-CCccEEEEecCCCCCcCcccc-cCCCCeeeeeccCCCCeeEEecCC---hHHHHH
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVST-NRYTVQVCAPDSEKSAVSHSI-TWRHPISARPADFDGVTAYAVSGT---PADCAS 91 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~-g~~~V~VVAP~~~~Sg~g~si-T~~~pl~v~~~~~~g~~~~~v~GT---PaDcV~ 91 (307)
-||||-=|+.+.+ +...+.|.+. |..=+.+.+|++--.|...+- ++..- +.. ..|..+|+.-|. |..-..
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~--~D~--~tglpVySLYG~~~~Pt~~mL 76 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDY--IDP--RTGLPVYSLYGKTRKPTPEML 76 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCC--cCC--CCCCeEEECCCCCCCCCHHHH
Confidence 3899999999866 5566888777 543457889999877776542 11110 111 125567776665 877766
Q ss_pred HhhhccCCCCCCcEEEecCCCCCcccc-cccchhhHHHHHHHH-HcCCCEEEEEe
Q 021782 92 LGVSQALFPSVPDLVISGINMGSNCGY-HVVYSGTVAGAREAF-FHGVPSVSISY 144 (307)
Q Consensus 92 ~al~~~l~~~~PDLVvSGIN~G~NlG~-dv~ySGTVgAA~ea~-~~GiPaIAvS~ 144 (307)
-+++.+++ || +.+|. ..+|--|++=+|||+ -.|+|-|-+=-
T Consensus 77 ~~vDvlvf----Di--------QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 77 KGVDVLVF----DI--------QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred hCCCEEEE----eC--------ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 66664332 32 45674 468999999999999 59999998753
No 26
>PRK09864 putative peptidase; Provisional
Probab=61.55 E-value=18 Score=35.67 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred cccccccC---CCCCCeEEEeCCCCCCCc------cHHHHHHHHHhcC--CccEEEEecCCCCCcCcccccCCCCeeeee
Q 021782 3 RRGIAIVN---SDHKPTIMVTNDDGIDAP------GLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARP 71 (307)
Q Consensus 3 ~~~~~~~~---~~~~~~ILlTNDDGi~a~------Gi~aL~~aL~~~g--~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~ 71 (307)
+.||.+-. ......+| |.+=+.++ |..+|.++|+... ..+|+.|+-.+|-=|...+.+... .
T Consensus 146 ~~GV~vGD~v~~~~~~~~l--~~~~i~~kalDnR~g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~-----~ 218 (356)
T PRK09864 146 KRGVEIGDFISPEANFACW--GEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAE-----H 218 (356)
T ss_pred hcCCCCCCEEEECCCcEEE--cCCEEEEEeCccHHHHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHh-----c
Confidence 34554433 23344444 44546553 6778888887663 257899988888777766555322 1
Q ss_pred ccCCCCeeEEecCChHHHHHHhhhc---cCCCCCCcEEEe--cCCCC-------------Ccccccc-cc--hhhHHHHH
Q 021782 72 ADFDGVTAYAVSGTPADCASLGVSQ---ALFPSVPDLVIS--GINMG-------------SNCGYHV-VY--SGTVAGAR 130 (307)
Q Consensus 72 ~~~~g~~~~~v~GTPaDcV~~al~~---~l~~~~PDLVvS--GIN~G-------------~NlG~dv-~y--SGTVgAA~ 130 (307)
++ ...+.+++.||++.+--.-.. .-+.+.|=|.+. |.+.- .|+-... .. .||=|+|+
T Consensus 219 i~--PDiaIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i 296 (356)
T PRK09864 219 IK--PDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRY 296 (356)
T ss_pred CC--CCEEEEEecccCCCCCCCcccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHH
Confidence 21 234788898886543221110 012334555332 33221 2222222 12 38999999
Q ss_pred HHHHcCCCEEEEEeecCCCC-----CCCCccHHHHHHHHHHHHH
Q 021782 131 EAFFHGVPSVSISYDWVGGK-----SNVNDYTLAAEACLPIINA 169 (307)
Q Consensus 131 ea~~~GiPaIAvS~~~~~~~-----~~~~~~~~aa~~~~~li~~ 169 (307)
+-...|+|++.+|.+..--+ -+..|++.+.++...+++.
T Consensus 297 ~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~ 340 (356)
T PRK09864 297 NVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTT 340 (356)
T ss_pred HHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHh
Confidence 98889999999998642211 1234677777666655544
No 27
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=60.47 E-value=51 Score=30.66 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=24.2
Q ss_pred eEEE-eCCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 16 TIMV-TNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 16 ~ILl-TNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
+|++ +=..|-+......|++.|++.| |+|+|+++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCCC
Confidence 4443 3344433444457999999999 8999998743
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=55.50 E-value=14 Score=34.92 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.7
Q ss_pred CeEEEeC-CCCCC--CccHHHHHHHHHhcCCccEEEEecCC
Q 021782 15 PTIMVTN-DDGID--APGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 15 ~~ILlTN-DDGi~--a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
|+||+.+ +.+.. ..-+..|+++|.+.| |+|.|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 5676655 43432 235688999999999 8999999753
No 29
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=55.38 E-value=12 Score=29.81 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=42.6
Q ss_pred cHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccC--CCCCCcEE
Q 021782 29 GLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQAL--FPSVPDLV 106 (307)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l--~~~~PDLV 106 (307)
-+..|+++|.+.| |+|.|++|..+...-. .....+++..+...... +.. + ... ....+...+ ...+||+|
T Consensus 6 ~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~-~~~-~~~~~~~~l~~~~~~~Dvv 77 (160)
T PF13579_consen 6 YVRELARALAARG-HEVTVVTPQPDPEDDE---EEEDGVRVHRLPLPRRP-WPL-R-LLR-FLRRLRRLLAARRERPDVV 77 (160)
T ss_dssp HHHHHHHHHHHTT--EEEEEEE---GGG-S---EEETTEEEEEE--S-SS-SGG-G-HCC-HHHHHHHHCHHCT---SEE
T ss_pred HHHHHHHHHHHCC-CEEEEEecCCCCcccc---cccCCceEEeccCCccc-hhh-h-hHH-HHHHHHHHHhhhccCCeEE
Confidence 3578999999999 8999999877665211 11223444443321110 000 0 011 123444333 45689999
Q ss_pred EecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEe
Q 021782 107 ISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 107 vSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
..-- ..++.++. ......|+|-|.-..
T Consensus 78 ~~~~----------~~~~~~~~-~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 78 HAHS----------PTAGLVAA-LARRRRGIPLVVTVH 104 (160)
T ss_dssp EEEH----------HHHHHHHH-HHHHHHT--EEEE-S
T ss_pred Eecc----------cchhHHHH-HHHHccCCcEEEEEC
Confidence 8421 11333332 223367999987664
No 30
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=54.80 E-value=79 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.7
Q ss_pred eEEEeCCCCCCCcc----HHHHHHHHHhcCCccEEEEecCCCC
Q 021782 16 TIMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 16 ~ILlTNDDGi~a~G----i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
|||+....-...-| +..|+++|.+.| |+|.++.+....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 35555544332333 456888888888 799999988765
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=53.71 E-value=69 Score=31.05 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEe
Q 021782 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 98 l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
+...+||+||+ .|.- . .+-+++.|.++|+|.+-..+
T Consensus 87 ~~~~kPdvvi~---~Ggy------~--s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 87 IRKLKPDVIFS---KGGF------V--SVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred HHhcCCCEEEe---cCch------h--hHHHHHHHHHcCCCEEEECC
Confidence 33468999998 3211 1 22356888899999986554
No 32
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=52.52 E-value=11 Score=30.53 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCccEEEEecCCCCCcC-cccccCCCCeeeeeccCC-CCeeE-EecCChHHH------HHHhhhccCCCC
Q 021782 31 RSLVRVLVSTNRYTVQVCAPDSEKSAV-SHSITWRHPISARPADFD-GVTAY-AVSGTPADC------ASLGVSQALFPS 101 (307)
Q Consensus 31 ~aL~~aL~~~g~~~V~VVAP~~~~Sg~-g~siT~~~pl~v~~~~~~-g~~~~-~v~GTPaDc------V~~al~~~l~~~ 101 (307)
-+|+++|++.| |||.+++|..-+.-. .+.+. ...+..+ ..... .-...+.+. +.-... .+...
T Consensus 16 lala~~L~~rG-h~V~~~~~~~~~~~v~~~Gl~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (139)
T PF03033_consen 16 LALARALRRRG-HEVRLATPPDFRERVEAAGLE------FVPIPGDSRLPRSLEPLANLRRLARLIRGLEEAMR-ILARF 87 (139)
T ss_dssp HHHHHHHHHTT--EEEEEETGGGHHHHHHTT-E------EEESSSCGGGGHHHHHHHHHHCHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHhccC-CeEEEeecccceecccccCce------EEEecCCcCcCcccchhhhhhhHHHHhhhhhHHHH-Hhhcc
Confidence 47999999999 899999886643322 22222 1111100 00000 000111111 111222 12123
Q ss_pred CCcEEEecCCCCCcccccccchh-hH-HHHHHHHHcCCCEEEEEee
Q 021782 102 VPDLVISGINMGSNCGYHVVYSG-TV-AGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 102 ~PDLVvSGIN~G~NlG~dv~ySG-TV-gAA~ea~~~GiPaIAvS~~ 145 (307)
.||+++. .|.....+++... +. +++.-+-.+|||.++....
T Consensus 88 ~~~~~~~---~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~ 130 (139)
T PF03033_consen 88 RPDLVVA---AGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLF 130 (139)
T ss_dssp HHCCCCH---CTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESS
T ss_pred Ccchhhh---ccCcccchHHHhhhhcCccceeEhhhCchHHHHhhC
Confidence 5677643 4445556655433 33 4556677899999998864
No 33
>PRK06849 hypothetical protein; Provisional
Probab=47.78 E-value=29 Score=33.80 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 13 ~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
..|+|||| |-.++.-..++++|.+.| ++|+++....
T Consensus 3 ~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLIT---GARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 46889999 666665566889999999 7999986653
No 34
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=47.62 E-value=33 Score=30.36 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCeEEEeCCCCCCCccHHHHHHHHHhcCCc
Q 021782 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRY 43 (307)
Q Consensus 14 ~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~ 43 (307)
+..|.||-|||....+...+.+.|++.+..
T Consensus 64 ~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ 93 (267)
T COG0726 64 GKAVALTFDDGPLDGNTPRILPLLKKYGIK 93 (267)
T ss_pred CCeEEEEeecCCCCCCcHHHHHHHHHcCCc
Confidence 466999999999999999999999998854
No 35
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=46.56 E-value=88 Score=32.14 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeecc--CCCCeeEEecCChHHHHHHhhhccCCCCCCcE
Q 021782 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDGVTAYAVSGTPADCASLGVSQALFPSVPDL 105 (307)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~--~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDL 105 (307)
+-+..+++.|.+.| .+++++=... ||+.+.-.-+ +.++ +++..+.+=++.-.+-++..++ -..|.
T Consensus 224 ~~~~~ra~~Lv~aG-Vd~i~~D~a~-----g~~~~~~~~i--~~i~~~~~~~~vi~g~~~t~~~~~~l~~-----~G~d~ 290 (475)
T TIGR01303 224 GDVGGKAKALLDAG-VDVLVIDTAH-----GHQVKMISAI--KAVRALDLGVPIVAGNVVSAEGVRDLLE-----AGANI 290 (475)
T ss_pred ccHHHHHHHHHHhC-CCEEEEeCCC-----CCcHHHHHHH--HHHHHHCCCCeEEEeccCCHHHHHHHHH-----hCCCE
Confidence 35678888898888 5776663333 5554332222 1221 2334444433333333333332 24799
Q ss_pred EEecCCCCCcccccccch---hhHHHHHHH----HHcCCCEEEE
Q 021782 106 VISGINMGSNCGYHVVYS---GTVAGAREA----FFHGVPSVSI 142 (307)
Q Consensus 106 VvSGIN~G~NlG~dv~yS---GTVgAA~ea----~~~GiPaIAv 142 (307)
|--|+--|.|+.+....- -|+.|-+++ ..+|+|.||=
T Consensus 291 i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 291 IKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred EEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999997663322 367776666 4579999974
No 36
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=42.73 E-value=1.5e+02 Score=27.49 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCC-Ce----------eeee--------c---------cCCCCee
Q 021782 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRH-PI----------SARP--------A---------DFDGVTA 79 (307)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~-pl----------~v~~--------~---------~~~g~~~ 79 (307)
++|.++=+++++. +|-|+-+.+-.-|.||+-|--. -+ .++. + ...|...
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999988888863 8999999999999999873221 00 0000 0 0011112
Q ss_pred E-------------------------EecCChHHHHHHhhhccCCCCCCcEE-EecCCCCCcccccccchhhHHHHHHHH
Q 021782 80 Y-------------------------AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYHVVYSGTVAGAREAF 133 (307)
Q Consensus 80 ~-------------------------~v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~NlG~dv~ySGTVgAA~ea~ 133 (307)
| .+=|-|+- -.++++..|.-...++| ..||..|.|-|- .+.||+-||.++|+
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P~~-~~~~~D~AlKaA~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A~ 200 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLE-AMYGIDAALKAADVQLVTFVGPPSETNFGG-ALLTGSQSACKAAC 200 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCcHH-HHHHHHHHHhhcCceEEEEeCCCCCceecC-eeEEeCHHHHHHHH
Confidence 2 13477744 45666655433567885 899999988887 78899999888887
Q ss_pred H
Q 021782 134 F 134 (307)
Q Consensus 134 ~ 134 (307)
.
T Consensus 201 ~ 201 (217)
T PRK15405 201 N 201 (217)
T ss_pred H
Confidence 3
No 37
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=42.56 E-value=2.3e+02 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHhcCCccEEEEecCCCCCcC
Q 021782 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (307)
Q Consensus 27 a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~ 57 (307)
+.-+..++++|.+.| ++|+|+.+.......
T Consensus 17 ~~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~ 46 (377)
T cd03798 17 GIFVKELARALAKRG-VEVTVLAPGPWGPKL 46 (377)
T ss_pred HHHHHHHHHHHHHCC-CceEEEecCCCCCCc
Confidence 345788999999888 799999988765544
No 38
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.87 E-value=41 Score=27.80 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.1
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecC
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~ 51 (307)
||+|.|- .+..+.+.|++.| .+|.|++|.
T Consensus 104 vLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 104 VLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 7888765 5566777888889 699999998
No 39
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=41.31 E-value=17 Score=32.47 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.7
Q ss_pred ccccchh-hHHHHHHHHH-cCCCE
Q 021782 118 YHVVYSG-TVAGAREAFF-HGVPS 139 (307)
Q Consensus 118 ~dv~ySG-TVgAA~ea~~-~GiPa 139 (307)
.||+|+| ||=||+.|.+ +|-|+
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa 126 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA 126 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc
Confidence 6899999 9999999995 88887
No 40
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.13 E-value=19 Score=35.27 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=17.4
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q 021782 122 YSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
-|||+ |+||++.|+|||..+-
T Consensus 259 ~ggTM--arEaAlLGtpaIs~~p 279 (346)
T COG1817 259 AGGTM--AREAALLGTPAISCYP 279 (346)
T ss_pred CCchH--HHHHHHhCCceEEecC
Confidence 36786 6899999999998773
No 41
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=39.04 E-value=43 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=29.3
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
..+.|+|+.|+++.-...|++..++.. .+|++..
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~~ 37 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIRK 37 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEEe
Confidence 458899999999999999999999886 6888763
No 42
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.78 E-value=31 Score=21.08 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.4
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHH
Q 021782 13 HKPTIMVTNDDGIDAPGLRSLVRVLV 38 (307)
Q Consensus 13 ~~~~ILlTNDDGi~a~Gi~aL~~aL~ 38 (307)
..++.|=-+|..+..+|.++|+++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 35677888899999999999999986
No 43
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.75 E-value=37 Score=34.52 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=38.3
Q ss_pred hHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEe
Q 021782 86 PADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 86 PaDcV~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
+-.+..-=+. .+.+.+||+||.|+- -|.|..=.-.|||..|.+. -.|||+|+-=.
T Consensus 61 ~eea~~~i~~-mv~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vt~My 115 (431)
T TIGR01918 61 LEEAVARVLE-MLKDKEPDIFIAGPA--FNAGRYGVACGEICKVVQD-KLNVPAVTSMY 115 (431)
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 4344333333 234468999999994 4778776678888888776 67999997643
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=38.70 E-value=43 Score=30.21 Aligned_cols=30 Identities=27% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCCCccHHHHHHHHHhcCCccEEEEecCCCC
Q 021782 24 GIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 24 Gi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
|=.+--++.|+++|.+.| |+|.|+.|....
T Consensus 14 ~G~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 14 NGVATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred CCeehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 334557889999999999 899999987654
No 45
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.60 E-value=37 Score=34.50 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=34.2
Q ss_pred CCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEe
Q 021782 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 98 l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
+.+.+||+||.|+- -|.|..=.-.|||..|.+. -.|||+|+-=.
T Consensus 72 v~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vtaMy 115 (431)
T TIGR01917 72 IKGANPDIFIAGPA--FNAGRYGMAAGAITKAVQD-ELGIKAFTAMY 115 (431)
T ss_pred HHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 33468999999994 4778776678888888776 67999997643
No 46
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=37.64 E-value=33 Score=32.67 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=43.4
Q ss_pred ecCChHHHHHHhhhccCCCCCCcEE-EecCCCCCccccc--ccchhhHHHHHHHHH
Q 021782 82 VSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYH--VVYSGTVAGAREAFF 134 (307)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~NlG~d--v~ySGTVgAA~ea~~ 134 (307)
+.+.|+-.-..+.+..+.....+|+ ...|..|.++|-- ++.+|.+||..+|..
T Consensus 186 ie~~p~a~gi~aaD~AlKaA~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~ 241 (266)
T PRK15415 186 IVGAPAGIGVVMADTALKSANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVI 241 (266)
T ss_pred EEcCcHHHHHHHHHHHHhhcCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHH
Confidence 6799999999999875533578988 7789999999854 578999999988874
No 47
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=37.20 E-value=46 Score=30.10 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCCCCccHHHHHHHHHhcCCccEEEEecCCCC
Q 021782 23 DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 23 DGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
+|..-.=+..-++.|.+.| ++|.++.|....
T Consensus 18 ~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred CccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 3333333455688999999 799999997654
No 48
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=37.14 E-value=73 Score=30.45 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 28 PGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
.-+..|+++|.+.| |+|+|+++...
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~~ 48 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRATR 48 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEecccC
Confidence 45789999999999 89999998753
No 49
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=36.57 E-value=44 Score=27.56 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=23.5
Q ss_pred EEEeCCCCCCC--ccHHHHHHHHHhcCCccEEEEe
Q 021782 17 IMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 17 ILlTNDDGi~a--~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
+-=.+|||-.+ .|...| +.|+..+..+|.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44578999998 999866 788888777887663
No 50
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.73 E-value=32 Score=28.00 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccc
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSI 61 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~si 61 (307)
||+|.|. -+..+.+.|++.| .+|+|++. ++.+++++
T Consensus 100 vLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~---~~~~s~~L 135 (146)
T PF01936_consen 100 VLVSGDS-----DFAPLVRKLRERG-KRVIVVGA---EDSASEAL 135 (146)
T ss_dssp EEE---G-----GGHHHHHHHHHH---EEEEEE----GGGS-HHH
T ss_pred EEEECcH-----HHHHHHHHHHHcC-CEEEEEEe---CCCCCHHH
Confidence 7888883 3666777788888 59999984 44455443
No 51
>PLN00414 glycosyltransferase family protein
Probab=34.47 E-value=1.9e+02 Score=29.25 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCCCcC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~ 57 (307)
+-.|++.|.+.| ++|+++.+..+.+-.
T Consensus 21 mL~LAk~Las~G-~~VT~vtt~~~~~~i 47 (446)
T PLN00414 21 YLHLANKLAEKG-HRVTFFLPKKAHKQL 47 (446)
T ss_pred HHHHHHHHHhCC-CEEEEEeCCchhhhh
Confidence 346889999999 699999988765433
No 52
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=34.26 E-value=57 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=26.2
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
.+|+|.+. +-+.-+++.|++.| ++|.|+++..+
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~ 35 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRND 35 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCC
Confidence 46777774 34788999999998 79999999544
No 53
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.00 E-value=1.3e+02 Score=30.37 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEec
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISG 109 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSG 109 (307)
-...+++|.+.| .+++++ -++-||+.++...++--+-.+++.....=+-.-.+.++.+++ + ..|.|..|
T Consensus 154 ~~~~v~~lv~aG-vDvI~i-----D~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--a---GaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAH-VDILVI-----DSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--V---GADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcC-CCEEEE-----ECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--c---CCCEEEEC
Confidence 346888899998 688887 233366655544442212223333333334444444444453 1 47999999
Q ss_pred CCCCCcccccccc-hh--hHHHHHH---HH-HcCCCEEEEE
Q 021782 110 INMGSNCGYHVVY-SG--TVAGARE---AF-FHGVPSVSIS 143 (307)
Q Consensus 110 IN~G~NlG~dv~y-SG--TVgAA~e---a~-~~GiPaIAvS 143 (307)
+--|..+++-... .| ++.+-.+ .+ ..++|.||=.
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 9888866654322 22 3333322 22 3589988643
No 54
>PRK11249 katE hydroperoxidase II; Provisional
Probab=33.20 E-value=1.4e+02 Score=32.56 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 12 ~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
.+.++|.|-=.||.....+..+.++|++.| .+|.||+|..
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~ 634 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRM 634 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCC
Confidence 356777777789999999999999999999 6999999965
No 55
>PLN02208 glycosyltransferase family protein
Probab=32.74 E-value=1.4e+02 Score=30.13 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHH---HHh-------------
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCA---SLG------------- 93 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV---~~a------------- 93 (307)
+-.|++.|.+.| ++|+++.+...++-....-.....+++..+.++ ..+|-|.++- .+.
T Consensus 21 ~l~LAk~La~~G-~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-----~~dgLp~g~~~~~~l~~~l~~~~~~~~~~ 94 (442)
T PLN02208 21 FLHLANKLAEKG-HRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-----PVNGLPAGAETTSDIPISMDNLLSEALDL 94 (442)
T ss_pred HHHHHHHHHhCC-CEEEEEeccchhhhhhcccCCCCceEEEEeCCC-----CccCCCCCcccccchhHHHHHHHHHHHHH
Q ss_pred ----hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 94 ----VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 94 ----l~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
+..++-..+||.||+-. .| -+..-|.-+|||.+.|+
T Consensus 95 ~~~~l~~~L~~~~~~cVV~D~-~~-------------wa~~vA~e~giP~~~f~ 134 (442)
T PLN02208 95 TRDQVEAAVRALRPDLIFFDF-AQ-------------WIPEMAKEHMIKSVSYI 134 (442)
T ss_pred HHHHHHHHHhhCCCeEEEECC-cH-------------hHHHHHHHhCCCEEEEE
No 56
>PLN00016 RNA-binding protein; Provisional
Probab=32.22 E-value=60 Score=31.41 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=28.8
Q ss_pred CCCCeEEEeCCCCCCCccH-HHHHHHHHhcCCccEEEEecCC
Q 021782 12 DHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 12 ~~~~~ILlTNDDGi~a~Gi-~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
...++|||||=+|=.+-.| +.|++.|.+.| |+|+++.-..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 3347899998887654322 55788888888 7999888543
No 57
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.77 E-value=73 Score=26.85 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=23.3
Q ss_pred eEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 16 ~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
-||+| ||.....+...++.|++.|. ++++|+
T Consensus 107 iillT--DG~~~~~~~~~a~~lk~~gi-~i~~ig 137 (164)
T cd01482 107 VILIT--DGKSQDDVELPARVLRNLGV-NVFAVG 137 (164)
T ss_pred EEEEc--CCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence 36666 78877778888889998884 777765
No 58
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=30.65 E-value=58 Score=30.19 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=31.3
Q ss_pred CeEEEeCCCCCCC-ccHHHHHHHHHhcCCccEEEEecCCCCCcCc
Q 021782 15 PTIMVTNDDGIDA-PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVS 58 (307)
Q Consensus 15 ~~ILlTNDDGi~a-~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g 58 (307)
-+|+|+ |||+.. .-+++-.+++++.+-.+++|..|-..++++-
T Consensus 125 ~~VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~ 168 (220)
T COG1926 125 RTVILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAA 168 (220)
T ss_pred CEEEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHH
Confidence 345555 999975 3456667778877767999999988777653
No 59
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=30.52 E-value=48 Score=32.75 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
+..|.++|.+.| |+|.|+.|.-.+-
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~~ 46 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGRI 46 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcch
Confidence 478999999999 8999999977653
No 60
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=29.76 E-value=72 Score=30.78 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 26 DAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 26 ~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
.+.-+..|+++|.+.| |+|+|+.|..
T Consensus 16 ~e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 16 VETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 3456788999999999 8999999864
No 61
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=29.50 E-value=49 Score=30.37 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCccEEEEecCC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
...|.++|++.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 478999999999 8999999976
No 62
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=29.31 E-value=46 Score=34.20 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCeEEEe-C-CCCCCCccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 13 HKPTIMVT-N-DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 13 ~~~~ILlT-N-DDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
+.-|||.. . -.+=+--.++.++++|.+.| |+|+|+-|...
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 44568865 3 34445678899999999999 89999999753
No 63
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.26 E-value=68 Score=30.48 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCCCeEEEeCCCCCCCccH-HHHHHHHHhcCCccEEEEecCCC
Q 021782 11 SDHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 11 ~~~~~~ILlTNDDGi~a~Gi-~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
..+..++||| =.|-|| +++++.|.+.| ++|++||-..+
T Consensus 3 ~~~~~~~lIT----GASsGIG~~~A~~lA~~g-~~liLvaR~~~ 41 (265)
T COG0300 3 PMKGKTALIT----GASSGIGAELAKQLARRG-YNLILVARRED 41 (265)
T ss_pred CCCCcEEEEE----CCCchHHHHHHHHHHHCC-CEEEEEeCcHH
Confidence 3456779999 356788 78999999999 79999997665
No 64
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=28.76 E-value=2.5e+02 Score=27.28 Aligned_cols=52 Identities=23% Similarity=0.142 Sum_probs=34.6
Q ss_pred CChHHHHHHhhhc---cCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEee
Q 021782 84 GTPADCASLGVSQ---ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 84 GTPaDcV~~al~~---~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (307)
++.++.+..++.. ++...+||+||+-=.. .=|+++|+.|..+|||.+-+-..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~----------~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 72 AGMAKSMGLTIIGFSDAFERLKPDLVVVLGDR----------FEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCc----------hHHHHHHHHHHHhCCcEEEEECC
Confidence 3456665555543 2334689999873111 12678999999999999988754
No 65
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=28.74 E-value=79 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=23.1
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcC-CccEEEEecCC
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN-RYTVQVCAPDS 52 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g-~~~V~VVAP~~ 52 (307)
|+||||+-. .++ .++++|++.| .++|+++-+..
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCC
Confidence 789999873 334 7788888885 25777776653
No 66
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=28.68 E-value=68 Score=31.79 Aligned_cols=53 Identities=28% Similarity=0.298 Sum_probs=35.2
Q ss_pred hHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEE
Q 021782 86 PADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI 142 (307)
Q Consensus 86 PaDcV~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAv 142 (307)
+=.+..-=+. .+-+.+||+||.||- -|.|..=.-.|+|+.|.+- ..|||+|+-
T Consensus 65 ~eea~~~i~~-mv~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e-~~~IP~vta 117 (349)
T PF07355_consen 65 KEEALKKILE-MVKKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQE-KLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHH-hhCCCEEEE
Confidence 4344443333 233458999999995 4777665667788777654 469999954
No 67
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=28.65 E-value=88 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 27 a~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
..-++.|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNYP 44 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCcc
Confidence 445788999999999 7999999875433
No 68
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=28.60 E-value=61 Score=31.81 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=27.7
Q ss_pred CCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecC
Q 021782 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (307)
Q Consensus 14 ~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~ 51 (307)
+..||.++|=|.+. =+.-+++.|.+.| |+|+|+++.
T Consensus 5 ~~~~~~~~~~~~~~-R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRSP-RMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCCH-HHHHHHHHHHhcC-ceEEEEEec
Confidence 44588888855544 4566899999999 899999874
No 69
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.31 E-value=73 Score=29.77 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCEEEEEee
Q 021782 127 AGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 127 gAA~ea~~~GiPaIAvS~~ 145 (307)
+-.+|++.+|+|+|++...
T Consensus 251 ~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 251 STSWERCCLGLPSLAICLA 269 (279)
T ss_pred hHHHHHHHcCCCEEEEEec
Confidence 4589999999999999974
No 70
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=27.96 E-value=2.6e+02 Score=26.83 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=42.7
Q ss_pred ecCChHHHHHHhhhccCCCCCCcEEEecCCCC--------CcccccccchhhHHHHHHHHHcCCCEEEEEeec
Q 021782 82 VSGTPADCASLGVSQALFPSVPDLVISGINMG--------SNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (307)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G--------~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~ 146 (307)
+|-|=.|+|.-.+.. .+||+||.=.-.= +.....|.--|+--=|..+...|.+-|=+|.++
T Consensus 34 ~Ditd~~~v~~~i~~----~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 34 LDITDPDAVLEVIRE----TRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred ccccChHHHHHHHHh----hCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecce
Confidence 567778888887764 3799998643221 122233555677777888889999999999753
No 71
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=27.92 E-value=23 Score=26.34 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=12.9
Q ss_pred EEeCCCCCCCc-cHHHHHHHHH
Q 021782 18 MVTNDDGIDAP-GLRSLVRVLV 38 (307)
Q Consensus 18 LlTNDDGi~a~-Gi~aL~~aL~ 38 (307)
||||+||--|- +.--+.-+|.
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv 24 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALV 24 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHH
Confidence 89999998763 3333444443
No 72
>PRK08703 short chain dehydrogenase; Provisional
Probab=27.58 E-value=1e+02 Score=27.06 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=26.6
Q ss_pred cCCCCCCeEEEeCCCCCCCccH-HHHHHHHHhcCCccEEEEecCC
Q 021782 9 VNSDHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 9 ~~~~~~~~ILlTNDDGi~a~Gi-~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
|...+.++|||| |- +.|| +++++.|.+.| ++|++++...
T Consensus 1 ~~~l~~k~vlIt---G~-sggiG~~la~~l~~~g-~~V~~~~r~~ 40 (239)
T PRK08703 1 MATLSDKTILVT---GA-SQGLGEQVAKAYAAAG-ATVILVARHQ 40 (239)
T ss_pred CCCCCCCEEEEE---CC-CCcHHHHHHHHHHHcC-CEEEEEeCCh
Confidence 444556789999 42 3355 56888888888 6888876544
No 73
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=27.54 E-value=3.6e+02 Score=26.89 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=70.5
Q ss_pred CccccccccCCCC--CCeEEEeCCCCCCCccHHH----HHHHHHhcCCc-cEEEEecCCCCCcCcccccCCCCeeeeecc
Q 021782 1 MERRGIAIVNSDH--KPTIMVTNDDGIDAPGLRS----LVRVLVSTNRY-TVQVCAPDSEKSAVSHSITWRHPISARPAD 73 (307)
Q Consensus 1 ~~~~~~~~~~~~~--~~~ILlTNDDGi~a~Gi~a----L~~aL~~~g~~-~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~ 73 (307)
|-+=|| |+||-. ..|+++-==||......+- ..+.|+++.+. ++.++-|..- -|-++..-...+-++.++.
T Consensus 1 ~~~VGi-ivNP~AG~g~r~~lkGaDg~~~e~~~ra~~~v~rfL~~l~~~~~~~flt~p~~-mG~~~~~~~~~~~~v~~~~ 78 (355)
T COG3199 1 MMKVGI-IVNPIAGRGGRVLLKGADGLVAEAPKRAIVRVKRFLKKLDANGDVEFLTPPGP-MGESLAEASGFKYRVIRFQ 78 (355)
T ss_pred CceeEE-EecCcccCCceeeccccCcchhhhhHHHHHHHHHHHHhccccCceEEEeCCcc-cchhHHHhhcCcceEEeec
Confidence 344555 677644 4678888889887766555 55666665421 2444444332 1222221111111111110
Q ss_pred CCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeec
Q 021782 74 FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (307)
Q Consensus 74 ~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~ 146 (307)
. ...-|-++=.+.+... +-+...||++. .|-| ||.-+..+|+-..+|.++++...
T Consensus 79 ---~---~~~~tTa~DT~~~~r~-~~~~gVdlIvf-------aGGD----GTarDVa~av~~~vPvLGipaGv 133 (355)
T COG3199 79 ---E---STPRTTAEDTINAVRR-MVERGVDLIVF-------AGGD----GTARDVAEAVGADVPVLGIPAGV 133 (355)
T ss_pred ---c---cCCCccHHHHHHHHHH-HHhcCceEEEE-------eCCC----ccHHHHHhhccCCCceEeecccc
Confidence 0 0111444444555554 33557898876 3444 99999999999999999999864
No 74
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=27.41 E-value=93 Score=24.92 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCCCeEEEeCCC------CC-CCccHHHHHHHHHhcCCccEEEEecCCCCCcCcc
Q 021782 11 SDHKPTIMVTNDD------GI-DAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (307)
Q Consensus 11 ~~~~~~ILlTNDD------Gi-~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~ 59 (307)
+..+.||.||==- |- ...-++.|.++|.+++ .||++.++..+..+.|+
T Consensus 37 ~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 37 PPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAELGE 91 (97)
T ss_dssp STSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGCCS
T ss_pred CCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhhCC
Confidence 4667888887211 11 1245888999999998 79999999999887764
No 75
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.09 E-value=1.4e+02 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCCCCCCccH-HHHHHHHHhcCCccEEEEec
Q 021782 12 DHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAP 50 (307)
Q Consensus 12 ~~~~~ILlTNDDGi~a~Gi-~aL~~aL~~~g~~~V~VVAP 50 (307)
.+.|+||||=- +-|| +.|++.|.+.| ++|++++.
T Consensus 4 ~~~~~ilItGa----sg~iG~~la~~l~~~g-~~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGG----SGGLGRAIAVRLAADG-ADVIVLDI 38 (249)
T ss_pred cCCCEEEEECC----CChHHHHHHHHHHHCC-CeEEEEcC
Confidence 34678999942 2344 67889999998 78988774
No 76
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=25.82 E-value=2.8e+02 Score=25.24 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCEEEEE-eecCCCCCCCCccH----HHHHHHHHHHHHHHHHH
Q 021782 128 GAREAFFHGVPSVSIS-YDWVGGKSNVNDYT----LAAEACLPIINAILAEI 174 (307)
Q Consensus 128 AA~ea~~~GiPaIAvS-~~~~~~~~~~~~~~----~aa~~~~~li~~l~~~~ 174 (307)
.|.-+..+|+|.++|= ....-+.....+|+ .|++.+.+++.++++.+
T Consensus 176 va~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~~~~l~~~ 227 (233)
T PRK14697 176 IGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKNI 227 (233)
T ss_pred HHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344557999999983 22111111223444 56666666666666543
No 77
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=25.68 E-value=5.9e+02 Score=26.13 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=48.9
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhc--CCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHH-HH
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVST--NRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADC-AS 91 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~--g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDc-V~ 91 (307)
|||||.---| --++|+.+|++. | .+|+++ |.... -|+..+-. .. . ...+.++-+-.+. +.
T Consensus 1 mkVLviG~Gg----rehal~~~l~~s~~g-~~v~~~-~g~~N--pg~~~~~~------~~--~-~~~~~~~~~d~~~l~~ 63 (486)
T PRK05784 1 MKVLLVGDGA----REHALAEALEKSTKG-YKVYAL-SSYLN--PGINSVVK------AT--G-GEYFIGNINSPEEVKK 63 (486)
T ss_pred CEEEEECCch----hHHHHHHHHHhCCCC-CEEEEE-ECCCC--hhheeecc------cc--c-CceEecCCCCHHHHHH
Confidence 7899953332 157788888876 6 467666 65332 23322110 00 0 1113455553333 33
Q ss_pred HhhhccCCCCCCcEEEecCCCCCcccccccchhhH-HHHHHHHHcCCCEEEEE
Q 021782 92 LGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSIS 143 (307)
Q Consensus 92 ~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTV-gAA~ea~~~GiPaIAvS 143 (307)
++- ..++|+||.|+-. +.+ |.|-.....|+|.+.-|
T Consensus 64 ~a~-----~~~id~Vi~g~E~-----------~l~~glad~l~~~Gi~v~Gps 100 (486)
T PRK05784 64 VAK-----EVNPDLVVIGPEE-----------PLFAGVADVLREEGFPVFGAS 100 (486)
T ss_pred HHH-----HhCCCEEEECCch-----------HHHHHHHHHHHhCCCCEECCc
Confidence 332 2369999987532 322 22233335788876544
No 78
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=25.61 E-value=94 Score=30.86 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 101 ~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
++.|+||.|-..=.--|.-+.-.||-..|+-|-.+|||.+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 5799999999888777888889999999999999999999886
No 79
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=25.59 E-value=1.4e+02 Score=28.83 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred CccccccccCCCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCC
Q 021782 1 MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
|.|-|-.|+. .+|+|||.. -| ..-+.+++++++.| ++|+++.+..+.
T Consensus 1 ~~~~~~~~~~--~~~~ilIiG-~g---~~~~~~~~a~~~~G-~~v~~~~~~~~~ 47 (395)
T PRK09288 1 MTRLGTPLSP--SATRVMLLG-SG---ELGKEVAIEAQRLG-VEVIAVDRYANA 47 (395)
T ss_pred CccccCCCCC--CCCEEEEEC-CC---HHHHHHHHHHHHCC-CEEEEEeCCCCC
Confidence 5666765554 677999994 33 23455777888899 699999877643
No 80
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.57 E-value=1.1e+02 Score=26.48 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=45.4
Q ss_pred cCCCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHH
Q 021782 9 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPAD 88 (307)
Q Consensus 9 ~~~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaD 88 (307)
|+..+.++||||--.|.- | +.|++.|.+.| |+|+++....+.. ..+.. .-+ .... .....+.+|=+-.+
T Consensus 1 ~~~~~~~~vlItGasg~i--G-~~l~~~l~~~g-~~v~~~~~~~~~~-~~~~~---~~~--~~~~-~~~~~~~~D~~~~~ 69 (249)
T PRK12825 1 MGSLMGRVALVTGAARGL--G-RAIALRLARAG-ADVVVHYRSDEEA-AEELV---EAV--EALG-RRAQAVQADVTDKA 69 (249)
T ss_pred CCCCCCCEEEEeCCCchH--H-HHHHHHHHHCC-CeEEEEeCCCHHH-HHHHH---HHH--HhcC-CceEEEECCcCCHH
Confidence 444455789999866542 2 56888888888 6876644432210 00000 000 0000 01123456666566
Q ss_pred HHHHhhhccC--CCCCCcEEEe
Q 021782 89 CASLGVSQAL--FPSVPDLVIS 108 (307)
Q Consensus 89 cV~~al~~~l--~~~~PDLVvS 108 (307)
.+.-.+.... + .++|.||.
T Consensus 70 ~v~~~~~~~~~~~-~~id~vi~ 90 (249)
T PRK12825 70 ALEAAVAAAVERF-GRIDILVN 90 (249)
T ss_pred HHHHHHHHHHHHc-CCCCEEEE
Confidence 6666654321 1 36899986
No 81
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.09 E-value=1.2e+02 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=21.7
Q ss_pred CeEEEeCCCCCCC--ccHHHHHHHHHhcCCccEEEEe
Q 021782 15 PTIMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 15 ~~ILlTNDDGi~a--~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
=.+|+.|.+...+ .-++.|.+.+.+ | .+++|+|
T Consensus 36 ~tll~i~~~~~~~~~~~~~~l~~~v~~-G-~~lvl~a 70 (70)
T PF14258_consen 36 GTLLVIGPDLRLSEPEEAEALLEWVEA-G-NTLVLAA 70 (70)
T ss_pred CEEEEEeCCCCCCchHHHHHHHHHHHc-C-CEEEEeC
Confidence 3477788775544 567778777764 5 3777765
No 82
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=24.51 E-value=1e+02 Score=30.23 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCCCcE-EEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 100 PSVPDL-VISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 100 ~~~PDL-VvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
.+.||+ ||..++.- --|-.||...|||.||+-
T Consensus 150 ~~~Pd~viv~d~~~e------------~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 150 GGLPDLLFVIDTNKE------------DIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred ccCCCEEEEeCCccc------------hHHHHHHHHcCCCEEEEe
Confidence 457995 55666643 368899999999999996
No 83
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.49 E-value=80 Score=29.33 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q 021782 122 YSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
.||+ ...+||+.+|+|.|++..
T Consensus 257 ~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 257 RAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred CCCh-hHHHHHHHcCCCEEEeeC
Confidence 5674 467799999999999753
No 84
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=24.39 E-value=4.4e+02 Score=26.33 Aligned_cols=42 Identities=31% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEe
Q 021782 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 101 ~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (307)
+.-||||.|= |.==.....=...++-|..|..+|+|.|||+-
T Consensus 282 ~~ADlVITGE--G~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G 323 (375)
T TIGR00045 282 KDADLVITGE--GRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAG 323 (375)
T ss_pred cCCCEEEECC--CcccccccCCchHHHHHHHHHHhCCeEEEEec
Confidence 3679999983 22111112223456889999999999999975
No 85
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.38 E-value=75 Score=28.28 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.8
Q ss_pred EEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 18 MVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 18 LlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
+|++-.|-...-++.|++.|++.| |+|.++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 344444555667888999998888 8999999887654
No 86
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=23.66 E-value=1e+02 Score=29.88 Aligned_cols=45 Identities=33% Similarity=0.446 Sum_probs=32.8
Q ss_pred CccccccccCCCCCCe-EEEeCCCCCCCc--cHHHHHHHHHhcCCccEEEEecCC
Q 021782 1 MERRGIAIVNSDHKPT-IMVTNDDGIDAP--GLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~~-ILlTNDDGi~a~--Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
|++||. +.+. ||||=|-=++.| |...+.+.|.+.|+ .|=|+|=-.
T Consensus 9 m~~rGW------d~lDvilVtGDAYVDHPsFG~AiIgR~Le~~Gy-rVgIiaQPd 56 (302)
T PF08497_consen 9 MKARGW------DELDVILVTGDAYVDHPSFGAAIIGRVLEAHGY-RVGIIAQPD 56 (302)
T ss_pred HHHcCC------ccccEEEEeCcccccCcchhHHHHHHHHHHcCC-eEEEEeCCC
Confidence 567777 2344 677777666654 89999999999995 898777433
No 87
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=23.47 E-value=34 Score=34.23 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
||+..-.+=+.--++.|+++|.+.| |+|+|+.|..
T Consensus 3 vLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 3 VLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ---------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 5555543444556899999999999 8999999976
No 88
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.41 E-value=2.6e+02 Score=27.80 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCC-CCCcEEEec
Q 021782 31 RSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFP-SVPDLVISG 109 (307)
Q Consensus 31 ~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~-~~PDLVvSG 109 (307)
..++. +.+.| ....|++-++--...|+.+|. ++....|..+..+ .|...-. ++. ++.|.||-|
T Consensus 190 ~~i~~-a~~~g-k~f~V~v~EsRP~~qG~rlta------~eL~~~GIpvtlI----~Dsa~~~----~m~~~~Vd~VivG 253 (363)
T PRK05772 190 APVKL-AKALG-MSVSVIAPETRPWLQGSRLTV------YELMEEGIKVTLI----TDTAVGL----VMYKDMVNNVMVG 253 (363)
T ss_pred HHHHH-HHHCC-CeEEEEECCCCccchhHHHHH------HHHHHCCCCEEEE----ehhHHHH----HHhhcCCCEEEEC
Confidence 33443 33456 477787777776777776653 2222223332222 1222222 233 479999999
Q ss_pred CCCCCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 110 INMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 110 IN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
-..=.--|.-+.-.||-.-|+-|-.+|||-+.++
T Consensus 254 AD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~a 287 (363)
T PRK05772 254 ADRILRDGHVFNKIGTFKEAVIAHELGIPFYALA 287 (363)
T ss_pred ccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEc
Confidence 9887777777788999999999999999999886
No 89
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.38 E-value=68 Score=27.93 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHcCCCEEEEEee
Q 021782 124 GTVAGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 124 GTVgAA~ea~~~GiPaIAvS~~ 145 (307)
+-+=+++-|..+|+|+|+++.+
T Consensus 264 ~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 264 MRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred cCCHHHHHHHHcCCCEEEEecC
Confidence 4455677888999999999863
No 90
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=23.15 E-value=91 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCCCCCCccHHHHHHHHHhcCC
Q 021782 11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNR 42 (307)
Q Consensus 11 ~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~ 42 (307)
......|.||=|||........|.+.|++.+.
T Consensus 33 ~~~~k~VaLTFDDGp~~~~t~~lL~~L~~~~v 64 (224)
T TIGR02884 33 DTSKKVIYLTFDNGYENGYTPKILDVLKEKKV 64 (224)
T ss_pred CCCCCEEEEEEECCCCccchHHHHHHHHHcCC
Confidence 34556799999999988888889999999873
No 91
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.93 E-value=88 Score=29.71 Aligned_cols=20 Identities=35% Similarity=0.150 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHcCCCEEEEE
Q 021782 122 YSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS 143 (307)
-||| +.+||+.+|+|+|.+-
T Consensus 268 ~sG~--~~lEa~a~G~PvI~~~ 287 (380)
T PRK00025 268 ASGT--VTLELALLKVPMVVGY 287 (380)
T ss_pred CccH--HHHHHHHhCCCEEEEE
Confidence 4787 4469999999999874
No 92
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.81 E-value=1.4e+02 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 12 ~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
.++|+||||==-|+ -| +.|++.|.+.| |+|+.+.
T Consensus 19 ~~~~~IlVtGgtGf--IG-~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 19 SEKLRICITGAGGF--IA-SHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCCCEEEEECCccH--HH-HHHHHHHHhCC-CEEEEEE
Confidence 46799999922222 22 56888888888 7998876
No 93
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=22.79 E-value=93 Score=23.79 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 14 ~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
..++-|+|..|+++.=...|++..++.. .+|++..
T Consensus 3 ~~~~~i~~~~GlHaRpA~~lv~~a~~f~-s~I~i~~ 37 (82)
T TIGR01003 3 SKEVTIINKVGLHARPAAILVKLASGFD-SEITLTK 37 (82)
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 3468899999999999999999999887 6888875
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=22.51 E-value=85 Score=31.36 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
+..|.++|.+.| |+|.|+.|...+
T Consensus 23 v~~L~~~L~~~G-~~V~v~~p~y~~ 46 (466)
T PRK00654 23 VGALPKALAALG-HDVRVLLPGYPA 46 (466)
T ss_pred HHHHHHHHHHCC-CcEEEEecCCcc
Confidence 489999999999 899999998653
No 95
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.45 E-value=1.5e+02 Score=27.37 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=25.6
Q ss_pred EeCCCCCCCccHHHHHHHHHhcCCccEEEEecCC
Q 021782 19 VTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (307)
Q Consensus 19 lTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (307)
.+++-|=...-+..|++.|.+.| |+|.|+....
T Consensus 7 ~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 7 CYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 34455555667899999999999 8999998754
No 96
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=22.35 E-value=1.4e+02 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=21.7
Q ss_pred eEEEeCCCCCCCccHHHHHHHHHh-cCCccEEEEec
Q 021782 16 TIMVTNDDGIDAPGLRSLVRVLVS-TNRYTVQVCAP 50 (307)
Q Consensus 16 ~ILlTNDDGi~a~Gi~aL~~aL~~-~g~~~V~VVAP 50 (307)
-||+| ||....+...+++.|++ .| ..|+.|+-
T Consensus 107 villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 107 VVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred EEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 36666 57666677888888888 55 35666654
No 97
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=22.32 E-value=1.7e+02 Score=26.15 Aligned_cols=55 Identities=18% Similarity=-0.012 Sum_probs=38.4
Q ss_pred CcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHHH
Q 021782 114 SNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 170 (307)
Q Consensus 114 ~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l 170 (307)
.+...+.+++.+.++...|-.+|+.||||=.-. . ...-.+++.+++.+..-++.+
T Consensus 92 ~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPais-t-Gv~G~p~~~aa~i~~~~v~~~ 146 (179)
T COG2110 92 SKDEAELLAAAYRAALRLAKEAGVRSVAFPAIS-T-GVYGFPLEEAARIAVEAVKDF 146 (179)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCceeeccccc-C-cccCCCHHHHHHHHHHHHHHh
Confidence 444456789999999999999999999994211 0 112346788888776655543
No 98
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=22.11 E-value=2.7e+02 Score=22.71 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=29.1
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCC
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
||+. ||.....+..+++.|+..| .+|.+|.|..+.
T Consensus 6 ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~ 40 (142)
T cd03132 6 ILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGG 40 (142)
T ss_pred EEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCc
Confidence 5554 5788889999999999998 599999998754
No 99
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.09 E-value=93 Score=26.69 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCCccHHHHHHHHHhcC
Q 021782 24 GIDAPGLRSLVRVLVSTN 41 (307)
Q Consensus 24 Gi~a~Gi~aL~~aL~~~g 41 (307)
.+.+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 477899999999998765
No 100
>PRK10342 glycerate kinase I; Provisional
Probab=21.96 E-value=5.5e+02 Score=25.80 Aligned_cols=40 Identities=25% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCcEEEecCCCCCcccccccchh--hHHHHHHHHHcCCCEEEEEe
Q 021782 101 SVPDLVISGINMGSNCGYHVVYSG--TVAGAREAFFHGVPSVSISY 144 (307)
Q Consensus 101 ~~PDLVvSGIN~G~NlG~dv~ySG--TVgAA~ea~~~GiPaIAvS~ 144 (307)
..-||||.|= |.=-. -+..| .+|-|..|..+|+|.|||+-
T Consensus 283 ~~ADLVITGE--G~~D~--QTl~GK~p~gVa~~A~~~~vPviai~G 324 (381)
T PRK10342 283 HDCTLVITGE--GRIDS--QSIHGKVPIGVANVAKKYHKPVIGIAG 324 (381)
T ss_pred ccCCEEEECC--CcCcc--cccCCccHHHHHHHHHHhCCCEEEEec
Confidence 3579999983 22111 23344 55889999999999999975
No 101
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.91 E-value=3.1e+02 Score=26.98 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCC-CCCcEEEe
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFP-SVPDLVIS 108 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~-~~PDLVvS 108 (307)
+..|..+.+ .| .+..|++.++--...|+.+|. ++....|..+..+ .|+... . +++ ++.|.||-
T Consensus 169 l~~l~~A~~-~g-k~~~V~v~EtRP~~qG~rlta------~eL~~~GI~vtlI----~Dsa~~---~-~M~~~~Vd~Viv 232 (339)
T PRK06036 169 LGVIRSAVE-QG-KEIKVIACETRPLNQGSRLTT------WELMQDNIPVTLI----TDSMAG---I-VMRQGMVDKVIV 232 (339)
T ss_pred HHHHHHHHH-cC-CceEEEEcCCCchhhHHHHHH------HHHHHcCCCEEEE----ehhHHH---H-HhccCCCCEEEE
Confidence 345555543 45 256666666665666665552 2222234333222 132222 1 233 46999999
Q ss_pred cCCC-CCcccccccchhhHHHHHHHHHcCCCEEEEE
Q 021782 109 GINM-GSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (307)
Q Consensus 109 GIN~-G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (307)
|-.. =.| | -+.-.||-.-|+-|..+|||-+.+.
T Consensus 233 GAd~I~an-G-v~NKiGT~~lA~~Ak~~~vPfyV~a 266 (339)
T PRK06036 233 GADRITRD-A-VFNKIGTYTHSVLAKEHEIPFYVAA 266 (339)
T ss_pred Cccchhhc-C-eehhhhHHHHHHHHHHhCCCEEEEe
Confidence 9765 335 7 5567999999999999999999876
No 102
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=21.66 E-value=3.5e+02 Score=24.85 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCEEEEE-eecCCCCCCCCcc----HHHHHHHHHHHHHHHHHH
Q 021782 127 AGAREAFFHGVPSVSIS-YDWVGGKSNVNDY----TLAAEACLPIINAILAEI 174 (307)
Q Consensus 127 gAA~ea~~~GiPaIAvS-~~~~~~~~~~~~~----~~aa~~~~~li~~l~~~~ 174 (307)
+.|.-+..+|+|.+++= ....-+.....+| ..|++.+.+++.++++++
T Consensus 176 AvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa~~~~~~l~~~ 228 (236)
T PRK06714 176 AFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERACEHLIAFLRVY 228 (236)
T ss_pred HHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566678999999873 2211111122233 456666677777766543
No 103
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=21.62 E-value=1.1e+02 Score=29.02 Aligned_cols=38 Identities=5% Similarity=0.068 Sum_probs=27.3
Q ss_pred CeEEEeCCCCC----CCccHHHHHHHHHhc--CCccEEEEecCCC
Q 021782 15 PTIMVTNDDGI----DAPGLRSLVRVLVST--NRYTVQVCAPDSE 53 (307)
Q Consensus 15 ~~ILlTNDDGi----~a~Gi~aL~~aL~~~--g~~~V~VVAP~~~ 53 (307)
|||++.++--. ...-+..|+++|.+. | ++|++++|...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g-~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKIN-CEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcc-eeEEEEecCCC
Confidence 78888876421 123457789999988 7 79999998654
No 104
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=21.58 E-value=1.1e+02 Score=23.50 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=29.4
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
..+-|+|..|+++.-...|++.+++.. .+|++..
T Consensus 4 ~~~~i~~~~GlHaRPA~~lv~~a~~f~-~~i~l~~ 37 (82)
T PRK13782 4 KRVEVSLKTGLQARPAALFVQEANRFH-ADIFIEK 37 (82)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 358899999999999999999999887 5888863
No 105
>PF11805 DUF3326: Protein of unknown function (DUF3326); InterPro: IPR021763 This family of functionally uncharacterised proteins is found in plants and bacteria.
Probab=21.55 E-value=76 Score=31.24 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=37.3
Q ss_pred ecCChHHHHHHhhhccCCCCCCcEEE--ecCC-----CCCcccccccchhhHH--HHHHHHHcCCCEEEE
Q 021782 82 VSGTPADCASLGVSQALFPSVPDLVI--SGIN-----MGSNCGYHVVYSGTVA--GAREAFFHGVPSVSI 142 (307)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVv--SGIN-----~G~NlG~dv~ySGTVg--AA~ea~~~GiPaIAv 142 (307)
+.=|=.-||..||.. .|++|- |... ...+++--|.--|.+| +.+..+-+|+|-|||
T Consensus 229 igyTFLpcVL~GLsr-----AP~~v~~~~~~~~~~~i~a~~VdaVV~P~~a~Gg~~vLa~~~~~~piIaV 293 (340)
T PF11805_consen 229 IGYTFLPCVLVGLSR-----APQFVTSRSAPRQPGDIWADDVDAVVVPATACGGSAVLAFAERGIPIIAV 293 (340)
T ss_pred hcccchhhHhhcccc-----CCceeeccCCCCCCCceeHhhCCEEEeCCCccCCHHHHHHHHcCCeEEEE
Confidence 333446799999964 589988 2211 1233344456778887 556666899999999
No 106
>PRK00955 hypothetical protein; Provisional
Probab=21.51 E-value=1e+02 Score=32.92 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=30.8
Q ss_pred CccccccccCCCCCCe-EEEeCCCCCCC--ccHHHHHHHHHhcCCccEEEEe
Q 021782 1 MERRGIAIVNSDHKPT-IMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~~-ILlTNDDGi~a--~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
|++||. +.+. ||||=|-=++. -|+..+.+.|.+.| ++|-|+|
T Consensus 6 ~~~~gw------~~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G-~~v~ii~ 50 (620)
T PRK00955 6 MKKRGW------DELDFILVTGDAYVDHPSFGTAIIGRVLEAEG-FRVGIIA 50 (620)
T ss_pred HHHcCC------CccCEEEEeCcccccCCccHHHHHHHHHHHCC-CEEEEec
Confidence 567776 2344 66676655554 48899999999999 6998884
No 107
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.44 E-value=1.4e+02 Score=28.53 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=28.9
Q ss_pred CCCeEEEeCCCCC--CCccHHHHHHHHHhcCCccEEEEecCCCCC
Q 021782 13 HKPTIMVTNDDGI--DAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (307)
Q Consensus 13 ~~~~ILlTNDDGi--~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (307)
+.|||||--++-- +-.-.++|+++|++.| ++|.+++|.....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~~ 46 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGES 46 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcC-CCcEEEEEhHHhc
Confidence 4678887665431 1233688999999888 6788888877533
No 108
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=21.10 E-value=1.4e+02 Score=26.74 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=22.5
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021782 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (307)
Q Consensus 17 ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVA 49 (307)
|||| ||.....+...++.|++.| -.|++|+
T Consensus 113 illT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 113 IVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred EEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 6676 7777677888888888887 3676664
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=21.06 E-value=95 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCccEEEEecCCCC
Q 021782 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
...|.++|++.| |+|.|+.|.-.+
T Consensus 23 v~~L~~aL~~~G-~~v~v~~p~y~~ 46 (473)
T TIGR02095 23 VGALPKALAALG-HDVRVLLPAYGC 46 (473)
T ss_pred HHHHHHHHHHcC-CeEEEEecCCcC
Confidence 488999999999 899999998765
No 110
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=20.60 E-value=1.3e+02 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHhcCCccEEEEecCCCCCc
Q 021782 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKSA 56 (307)
Q Consensus 27 a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg 56 (307)
+.-+..|++.|.+.| |+|.++.+.....-
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~ 45 (374)
T cd03801 17 ERHVLELARALAARG-HEVTVLTPGDGGLP 45 (374)
T ss_pred hHHHHHHHHHHHhcC-ceEEEEecCCCCCC
Confidence 445788999999888 79999999876543
No 111
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=20.30 E-value=1.2e+02 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCCccEEEEecCCCCCc
Q 021782 29 GLRSLVRVLVSTNRYTVQVCAPDSEKSA 56 (307)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg 56 (307)
-+..|+++|.+.| |+|+|+++......
T Consensus 20 ~~~~l~~~L~~~g-~~v~v~~~~~~~~~ 46 (359)
T cd03823 20 VAHDLAEALAKRG-HEVAVLTAGEDPPR 46 (359)
T ss_pred HHHHHHHHHHhcC-CceEEEeCCCCCCC
Confidence 3677999999888 89999999876543
No 112
>PRK02947 hypothetical protein; Provisional
Probab=20.20 E-value=4.3e+02 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHcCCCEEEEEee
Q 021782 124 GTVAGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 124 GTVgAA~ea~~~GiPaIAvS~~ 145 (307)
-++-++..|-.+|+|.|+++..
T Consensus 121 ~~i~~~~~a~~~g~~vI~iT~~ 142 (246)
T PRK02947 121 VPIEMALEAKERGAKVIAVTSL 142 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcCC
Confidence 3888999999999999999753
No 113
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.20 E-value=1.5e+02 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.5
Q ss_pred EEEeC---CCCCCCccHHHHHHHHHhcCCccEEEEecCCC
Q 021782 17 IMVTN---DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (307)
Q Consensus 17 ILlTN---DDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (307)
||+|| =||+.-.=+-.-+++|++.| ++|.+++|...
T Consensus 6 ills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 6 VILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 55553 14777667777889999999 79999999764
No 114
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=20.18 E-value=1.6e+02 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.8
Q ss_pred cHHHHHHHHHhcCCccEEEEecCCCC
Q 021782 29 GLRSLVRVLVSTNRYTVQVCAPDSEK 54 (307)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (307)
..+.|+++|.+.| |+|+|+.+....
T Consensus 12 ~~~~la~~L~~~G-~~v~~~~~~~~~ 36 (396)
T cd03818 12 QFRHLAPALAAQG-HEVVFLTEPNAA 36 (396)
T ss_pred hHHHHHHHHHHCC-CEEEEEecCCCC
Confidence 3688999999999 899999988764
No 115
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.06 E-value=2.8e+02 Score=26.59 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCCcEEEecCCCCCcccccccchhhH-HHHHHHHHcCCCEEEEEee
Q 021782 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (307)
Q Consensus 101 ~~PDLVvSGIN~G~NlG~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (307)
..+||||+ +|-| ||+ .||......++|-+.|..+
T Consensus 63 ~~~dlvi~-------lGGD----GT~L~aa~~~~~~~~PilGIN~G 97 (292)
T PRK01911 63 GSADMVIS-------IGGD----GTFLRTATYVGNSNIPILGINTG 97 (292)
T ss_pred cCCCEEEE-------ECCc----HHHHHHHHHhcCCCCCEEEEecC
Confidence 35799998 7777 997 7777777789999999875
Done!