BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021783
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust.
Identities = 260/307 (84%), Positives = 289/307 (94%)
Query: 1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
MAAL+AVTHL+ GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT LDEVA+AIGP
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217
Query: 61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277
Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337
Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397
Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457
Query: 301 ALRTGPL 307
A +T PL
Sbjct: 458 AFKTFPL 464
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 199/306 (65%), Gaps = 5/306 (1%)
Query: 1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIGP 59
MAA + V LL G +VA DDLYGGT RL RV +T G+ V+ D +AI
Sbjct: 92 MAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA 151
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
TK+VW+E+PTNP ++ DI IA +A HG L +VDN+ SP+L RPL LGAD+V+HSA
Sbjct: 152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSA 211
Query: 120 TKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
TK++ GHSD++ G+ AV G+ LA+++ FLQN+ G PFD ++ LRG+KT+ LR+
Sbjct: 212 TKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRA 270
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
+NA +A++L +HP ++KV Y GL HP H L Q G G ++S L G +K
Sbjct: 271 HCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRF 330
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
E T+ F++ S G V+SL++ P M+HASIPV R+ G+++ LVR+SVGIED+ DL
Sbjct: 331 CEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRG 390
Query: 297 DLDKAL 302
DL++AL
Sbjct: 391 DLERAL 396
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 256 bits (655), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
+AA +THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P
Sbjct: 92 LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 151
Query: 61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
TKLVW+E+PTNP Q++ DI A + H HG ++LV DN+ MSP RPL LGADI M+SA
Sbjct: 152 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSA 211
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
TK++ GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK
Sbjct: 212 TKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHF 271
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVE 238
N +A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++
Sbjct: 272 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 331
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 287
K F++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
+AA +THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P
Sbjct: 96 LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 155
Query: 61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
TKLVW+E+PTNP Q++ DI A + H HG ++LV DN+ MSP RPL LGADI M+SA
Sbjct: 156 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSA 215
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
TK++ GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK
Sbjct: 216 TKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHF 275
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVE 238
N +A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++
Sbjct: 276 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 335
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 287
K F++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 336 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 4/302 (1%)
Query: 2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
AA A+ +L G+ +V DD YGGT RL+ +V V V DLD V +AI P T
Sbjct: 93 AADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTT 152
Query: 62 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
+L+WVE+PTNP I DI IA++ A +LVDN+ SP L +PL LGAD+V+HS T
Sbjct: 153 RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTX 212
Query: 122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 181
+I GHSDV+ G L E L + FLQN G+ PFD ++ +RG+KT+ LR+++ +N
Sbjct: 213 YIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSEN 272
Query: 182 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETT 240
A +AEFLA HP + V Y GLP HPGH + Q +G G ++S + ++ + T
Sbjct: 273 AAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKT 332
Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
F + S GSV+SLI P M+HAS + + +DLVR+SVGIEDV DL+ DL +
Sbjct: 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRLSVGIEDVADLLDDLKQ 389
Query: 301 AL 302
AL
Sbjct: 390 AL 391
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 250 bits (639), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 193/310 (62%), Gaps = 9/310 (2%)
Query: 2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
A A + L G V+ D+YGGT R ++V GV N L+++ I T
Sbjct: 81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-LNDLPQLIKENT 139
Query: 62 KLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDNSIMSPVLSRPLELGADIVMH 117
KLVW+E+PTNP ++ DI+K+A++ H A +L+VDN+ +SP +S PL GADIV+H
Sbjct: 140 KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVH 199
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
SATK+I GHSDV+ GVLA + L + L FLQNA G+ +PFD W+ RG+KT+ LRV +
Sbjct: 200 SATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQ 259
Query: 178 QQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGA--GSVLSF-LTGSLALS 233
+A KIAEFLA+ V VNY GL HP +++ Q + A G ++SF + G +
Sbjct: 260 AALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAA 319
Query: 234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 293
+T+ F++ S G ++SL+ +P M+H IP E R+A G+ +DLVRISVGIED +D
Sbjct: 320 SKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDD 379
Query: 294 LISDLDKALR 303
L+ D+ +AL+
Sbjct: 380 LLEDIKQALK 389
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 191/304 (62%), Gaps = 1/304 (0%)
Query: 1 MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
M A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 84 MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP 143
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS
Sbjct: 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
+K+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
+N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEH 323
Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL
Sbjct: 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLK 383
Query: 300 KALR 303
+AL
Sbjct: 384 QALE 387
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2 AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
+ ++A+T L T G+ IV+ +YG T LS PK G+ V V+ +E+ +A+
Sbjct: 87 SGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
P TK+V++E+P NP + DI +A +AH GALL+VDN+ MSP +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
S TK+I GH DV+ G++ K E + + + L++ G ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
+ +NA KIA FL HP + +V Y GL HP +EL Q G ++SF + G L +
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
++ + + + VS G ++LI P M+H+ + E R G+T+ L+R+SVG+ED D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
+DL+ A+R
Sbjct: 387 NDLEHAIR 394
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 190/304 (62%), Gaps = 1/304 (0%)
Query: 1 MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
M A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 84 MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP 143
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS
Sbjct: 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
+ +I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
+N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEH 323
Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL
Sbjct: 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLK 383
Query: 300 KALR 303
+AL
Sbjct: 384 QALE 387
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2 AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
+ ++A+T L T G+ IV+ +YG T LS PK G+ V+ V+ +E+ +A+
Sbjct: 87 SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAM 146
Query: 58 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
P TK+V++E+P NP + DI +A +AH GALL+VDN+ MSP +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
S T +I GH DV+ G++ K E + + + L++ G ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
+ +NA KIA FL HP + +V Y GL HP +EL Q G ++SF + G L +
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
++ + + + VS G ++LI P M+H+ + E R G+T+ L+R+SVG+ED D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
+DL+ A+R
Sbjct: 387 NDLEHAIR 394
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2 AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
+ ++A+T L T G+ IV+ +YG T LS PK G+ V+ V+ +E+ +A+
Sbjct: 87 SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAM 146
Query: 58 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
P TK+V++E+P NP + DI +A +AH GALL+VDN+ MSP +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
S T +I GH DV+ G++ K E + + + L++ G ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
+ +NA KIA FL HP + +V Y GL HP +EL Q G ++SF + G L +
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
++ + + + VS G ++LI P M+H+ + E R G+T+ L+R+SVG+ED D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
+DL+ A+R
Sbjct: 387 NDLEHAIR 394
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 191/308 (62%), Gaps = 6/308 (1%)
Query: 2 AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
+ ++A+T L T G+ IV+ +YG T LS PK G+ V V+ +E+ +A+
Sbjct: 87 SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
P TK+V++E+P NP + DI +A +AH GALL+VDN+ MSP +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
S T +I GH DV+ G++ K E + + + L++ G ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
+ +NA KIA FL HP + +V Y GL HP +EL Q G ++SF + G L +
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
++ + + + VS G ++LI P M+H+ + E R G+T+ L+R+SVG+ED D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
+DL+ A+R
Sbjct: 387 NDLEHAIR 394
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 191/308 (62%), Gaps = 6/308 (1%)
Query: 2 AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
+ ++A+T L T G+ IV+ +YG T LS PK G+ V V+ +E+ +A+
Sbjct: 87 SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
P TK+V++E+P NP + DI +A +AH GALL+VDN+ MSP +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
S T +I GH DV+ G++ K E + + + L++ G ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
+ +NA KIA FL HP + +V Y GL HP +EL Q G ++SF + G L +
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
++ + + + VS G ++LI P M+H+ + E R G+T+ L+R+SVG+ED D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
+DL+ A+R
Sbjct: 387 NDLEHAIR 394
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 190/305 (62%), Gaps = 3/305 (0%)
Query: 1 MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
M A+AA V L G+ +++ D LYG T L K GV V ++ + + P
Sbjct: 23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKP 82
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVMHS 118
T++V+ E+P NP ++ DI + A +L +VDN+ SP+L+ PL+LG DIV+HS
Sbjct: 83 NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHS 142
Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
ATK+I GH+DV+AG++ + + +AK + +++ G+ ++P D W+ RG T+ +RV++
Sbjct: 143 ATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR 202
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
+NAQK+AEFL H VKKV Y GLP+HPGHE+ Q K GS+++F L +K V+
Sbjct: 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL 262
Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
+ S+ VS G +SLI P M+HA +P E R+A GLT++L+R+SVG E+V D+I D
Sbjct: 263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDD 322
Query: 298 LDKAL 302
L +AL
Sbjct: 323 LKQAL 327
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 1 MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
M A+AA V +L G+ +++ + LYG T L K G+ V +NT EV + P
Sbjct: 87 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP 146
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHS 118
TK+V+ E+P NP +I D+ ++ + AH+ G L++ DN+ SP+++ P++ G D+V+HS
Sbjct: 147 NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
ATK+I GH+DV+AG++ K + L + + +++ GS ++P D W+ RG+ T+ +R++
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHV 236
+ +NA K+AE+L SHP V+KV Y G +H GH++ Q + GS+++F+ S +K +
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL 326
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
++ K ++ VS G +SLI P M+HA +P E R+A G+T+ ++R+SVGIED ++LI+
Sbjct: 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIA 386
Query: 297 DLDKAL 302
D + L
Sbjct: 387 DFKQGL 392
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 186/297 (62%), Gaps = 4/297 (1%)
Query: 10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
LL G+E++ G+ LYG T L + GV ++ V+ DL + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
NP + DI +A++A HGA ++VDN+ +P L RPLELGAD+V+HSATK+++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
AG++ V + L + L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
FLA P+V+ ++Y GL P + L Q G +++F L G + + + + FS
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
VS G +SL P M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
LL G+E++ G+ LYG T L + GV ++ V+ DL + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
NP + DI +A++A HGA ++VDN+ +P L RPLELGAD+V+HSAT +++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
AG++ V + L + L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
FLA P+V+ ++Y GL P + L Q G +++F L G + + + + FS
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
VS G +SL P M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
LL G+E++ G+ LYG T L + GV ++ V+ DL + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
NP + DI +A++A HGA ++VDN+ +P L RPLELGAD+V+HSAT +++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
AG++ V + L + L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
FLA P+V+ ++Y GL P + L Q G +++F L G + + + + FS
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
VS G +SL P M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 2/305 (0%)
Query: 1 MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
M+A+ VT L G+ +VA D YGG+ RL + + V V+ D + +A+
Sbjct: 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE 136
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
KLV VESP+NP ++ DI KI +A GA+ +VDN+ +SP L PL LGAD+V+HS
Sbjct: 137 KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSC 196
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
T ++ GHSDV+AGV+ K + EL + N G FD ++ LRG++T+ R+E Q
Sbjct: 197 TXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 256
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
NAQ I ++L + P VKK+ + LPE+ GHE+ Q KG G++LSF L G + +
Sbjct: 257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 316
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
F++ S G V+SLIS M+HA + E R A G++E L+RIS GIED DLI+DL
Sbjct: 317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 376
Query: 299 DKALR 303
+ R
Sbjct: 377 ENGFR 381
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 177/306 (57%), Gaps = 5/306 (1%)
Query: 2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
A ++ LLG G+ +VA L+G + S + P+ GV V+ DL + A+ T
Sbjct: 108 AVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPT 167
Query: 62 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
+ V+ E+P+NP Q + DI + E+AHA GA +++DN +P+L + LG D+V++S T
Sbjct: 168 QAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTX 227
Query: 122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 181
I G V+ G + E + + L G ++ F+ W+ L+G++T+A+RV+ +
Sbjct: 228 HIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNAS 287
Query: 182 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----V 236
AQ+IAEFL HP V+ V Y LP HP ++L Q G G+V++F L ++K V
Sbjct: 288 AQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEV 347
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
++ + I+ + G KSL++ P +H ++ E R A GL + +VRISVG+ED +DLI+
Sbjct: 348 LDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIA 407
Query: 297 DLDKAL 302
D+D+AL
Sbjct: 408 DIDRAL 413
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 165/295 (55%), Gaps = 3/295 (1%)
Query: 10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVES 68
L+ G IV D Y T + + PK G+ ++ D+ + A+ L + ES
Sbjct: 149 LVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTES 208
Query: 69 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 128
PTNP + DI ++++ H GAL+ +D + +P+ + L LGAD+V+HSATKF+ GH+D
Sbjct: 209 PTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHND 268
Query: 129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
V+AG ++ +L E+ L + G L P ++ +RG+KT+ LRV++Q A ++AE
Sbjct: 269 VLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEI 327
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITV 247
L +HP+V+ V Y GL HP H + Q G G +SF + G L + V+ K I
Sbjct: 328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAP 387
Query: 248 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
SFG +S++ P MS+ + R G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 388 SFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 166/336 (49%), Gaps = 35/336 (10%)
Query: 2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGPW 60
A A+T L G+ IV+ +LYGGT + G+ V+ + + +E +
Sbjct: 85 AQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEK 144
Query: 61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSA 119
T+ WVES NP I D+ +A+ A G L+VDN+ M L RPL GA +V HS
Sbjct: 145 TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSL 204
Query: 120 TKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA---- 151
TK++ GH V+AG + G RL + EL F+ A
Sbjct: 205 TKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG 264
Query: 152 ---EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 208
+G L PF+ W+ L G++T++LR E+ +N +A +L P+V VNY GLP HP
Sbjct: 265 LRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPH 324
Query: 209 HELHYSQAKG-AGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 266
H+ KG G+VL+F L G +K + K S + G ++L P +H+
Sbjct: 325 HDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQ 384
Query: 267 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
+ E + G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 385 LSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 21/323 (6%)
Query: 1 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
MAA++ A+ L G+ +V D L+G T L + P G+ V+ V+ D V A
Sbjct: 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE 166
Query: 60 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
TKL+++E+ +NP+ Q+ D+ ++++ HA G L+VD ++ P L LG DI + S+
Sbjct: 167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSS 226
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE-------GSGLAPF 159
TKFI+G + GVL G K L FL A G L+P
Sbjct: 227 TKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH 286
Query: 160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 219
+ ++ G++TMALR+E+ NAQ++A +L S P+VK VN+ LP+ P + + Q + A
Sbjct: 287 NAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYA 346
Query: 220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE 279
GS+L+F S S ++ K + KSLI P + +A E R ++
Sbjct: 347 GSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISP 406
Query: 280 DLVRISVGIEDVNDLISDLDKAL 302
++R+SVGIE++ DL D+ +AL
Sbjct: 407 AMMRLSVGIEEIEDLKEDILQAL 429
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 30/317 (9%)
Query: 14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
G+E+VA L+G T L +V GV V+ V+ + + V A+ T+ V+VE+ NP
Sbjct: 95 GDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAKTRAVFVETVANPA 153
Query: 74 QQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAG 132
+ D+ +A +A G L+VDN+ + L RPL GA +V+ S T + +GH V+ G
Sbjct: 154 LLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVLGG 213
Query: 133 -VLAVKGERLAKELYFLQ--------------------------NAEGSGLAPFDCWICL 165
VL+ + E FLQ + G L+PF+ ++
Sbjct: 214 AVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLF 273
Query: 166 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 225
+G++T+ALRV + + A+ +AE L HP+VK + Y GLPE P H G +L+
Sbjct: 274 QGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTL 333
Query: 226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 285
G L + + + + G ++L+ P +H+ + E R G+T LVR+S
Sbjct: 334 DLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVS 392
Query: 286 VGIEDVNDLISDLDKAL 302
VG+ED DL++ ++AL
Sbjct: 393 VGLEDPLDLLALFEEAL 409
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 24/302 (7%)
Query: 14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
G+ ++ + Y + S++ K GV + ++ + P TK+V++ESP +
Sbjct: 101 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 160
Query: 74 QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
++ D+ I + A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M
Sbjct: 161 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMI 220
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
G E+L + Y + G + +I RG++T+ +R+ + +++ K+AE+
Sbjct: 221 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 276
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
LA HP+V +VN+ LP GHE G+ + SF+ ++ + ++ FS+
Sbjct: 277 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 336
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
S+G +SLI A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 337 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 389
Query: 301 AL 302
Sbjct: 390 GF 391
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 24/302 (7%)
Query: 14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
G+ ++ + Y + S++ K GV + ++ + P TK+V++ESP +
Sbjct: 121 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 180
Query: 74 QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
++ D+ I + A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M
Sbjct: 181 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMI 240
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
G E+L + Y + G + +I RG++T+ +R+ + +++ K+AE+
Sbjct: 241 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 296
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
LA HP+V +VN+ LP GHE G+ + SF+ ++ + ++ FS+
Sbjct: 297 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 356
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
S+G +SLI A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 357 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 409
Query: 301 AL 302
Sbjct: 410 GF 411
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 151/302 (50%), Gaps = 24/302 (7%)
Query: 14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
G+ ++ + Y + S++ K GV + ++ + P TK+V++ESP +
Sbjct: 101 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 160
Query: 74 QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
++ D+ I + A++++DN+ + VL + L+ G D+ + +AT ++ GHSD M
Sbjct: 161 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMI 220
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
G E+L + Y + G + +I RG++T+ +R+ + +++ K+AE+
Sbjct: 221 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 276
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
LA HP+V +VN+ LP GHE G+ + SF+ ++ + ++ FS+
Sbjct: 277 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 336
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
S+G +SLI A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 337 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 389
Query: 301 AL 302
Sbjct: 390 GF 391
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 34 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 88
V KTG V+K V + DL+ + + TKLV V +N + +IA++AH
Sbjct: 138 VAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ 197
Query: 89 HGALLLVDNSIMSP 102
GA +LVD +P
Sbjct: 198 AGAKVLVDACQSAP 211
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 55 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 102
S I T+LV V S + + D+R + ++ H GAL++VD+S +P
Sbjct: 160 SLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAP 207
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------TCDLDEVAS 55
A AA+T L+ G+E++ D Y ++ +G +VKR+ D E A+
Sbjct: 103 ALYAAITALVRNGDEVICFDPSYDSYAPAIAL----SGGIVKRMALQPPHFRVDWQEFAA 158
Query: 56 AIGPWTKLVWVESPTNP 72
+ T+LV + +P NP
Sbjct: 159 LLSERTRLVILNTPHNP 175
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 51 DEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDN 97
+++ AI P TKL+ +P+NP + ++R IA++A G +L D
Sbjct: 154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,692,746
Number of Sequences: 62578
Number of extensions: 331505
Number of successful extensions: 924
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 43
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)