Query 021784
Match_columns 307
No_of_seqs 141 out of 207
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.4 0.0012 4.3E-08 55.5 2.4 73 184-256 31-104 (137)
2 3b5d_A Multidrug transporter E 96.4 0.0018 6.1E-08 52.1 2.9 72 185-256 32-104 (110)
3 2hac_A T-cell surface glycopro 7.1 2.1E+02 0.007 18.5 1.6 25 213-237 6-30 (33)
4 1oo0_A MAGO nashi protein; RNA 6.0 1.5E+02 0.0052 25.1 0.7 19 50-68 28-46 (147)
5 3rlf_F Maltose transport syste 3.5 7.9E+02 0.027 24.0 3.9 62 185-250 16-77 (514)
6 4djk_A Probable glutamate/gamm 3.5 2.2E+03 0.075 19.5 10.1 11 152-162 373-383 (511)
7 1y0n_A Hypothetical UPF0270 pr 3.0 5.5E+02 0.019 19.3 1.7 18 281-298 12-29 (78)
8 2llm_A Amyloid beta A4 protein 4.2 2.8E+02 0.0097 18.8 0.0 19 216-234 25-43 (43)
9 2ks1_B Epidermal growth factor 2.6 8.2E+02 0.028 16.3 2.0 10 225-234 29-38 (44)
10 2lkw_A Membrane fusion protein 2.5 8E+02 0.027 14.6 1.5 17 16-32 5-21 (26)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.41 E-value=0.0012 Score=55.47 Aligned_cols=73 Identities=22% Similarity=0.157 Sum_probs=51.2
Q ss_pred ccchHhhHHHHHHHHHHHhhhccccccHHHHh-ccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784 184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (307)
Q Consensus 184 ~kfli~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s 256 (307)
|++++..++-+++-++...|+.+.|.+....+ ......++++++++||+.+.+..|++|+.++++|+++....
T Consensus 31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34555567788889999999999999976555 89999999999999999999999999999999999887654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.36 E-value=0.0018 Score=52.06 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=61.0
Q ss_pred cchHhhHHHHHHHHHHHhhhccccccHHHHh-ccchHHHHHHHHHHHhcccccccccchhhheeeceeeEeec
Q 021784 185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (307)
Q Consensus 185 kfli~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Glivvv~s 256 (307)
++++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4444555677788888889999999887555 89999999999999999999999999999999999876554
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.12 E-value=2.1e+02 Score=18.48 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=19.6
Q ss_pred HHhccchHHHHHHHHHHHhcccccc
Q 021784 213 PILSQTFLVWQILLSIIFLGRRYRV 237 (307)
Q Consensus 213 ~LL~q~~IP~tmllS~ifLk~RY~~ 237 (307)
-+|++..+..-+++..+|+|.|+..
T Consensus 6 YiLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 6 YLLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777778888888899888764
No 4
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=5.99 E-value=1.5e+02 Score=25.08 Aligned_cols=19 Identities=47% Similarity=0.739 Sum_probs=12.8
Q ss_pred ecCCccccccCCCCCCCch
Q 021784 50 RSSKRNYYHNNSNYKNNNV 68 (307)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ 68 (307)
|+.-|-=|-|||||||.+-
T Consensus 28 r~dG~lrYaNnSnYknd~~ 46 (147)
T 1oo0_A 28 RPDGKLRYANNSNYKNDTM 46 (147)
T ss_dssp CTTSEEEEEEECCTTSSCC
T ss_pred cCCCeEEEeccCCCcCCee
Confidence 3333344678999999864
No 5
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=3.54 E-value=7.9e+02 Score=24.05 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=41.9
Q ss_pred cchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeece
Q 021784 185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV 250 (307)
Q Consensus 185 kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gl 250 (307)
|.+++|++|+++.+..+..+..-.- ++--.....+.+.-++|..||-..++|+==.++...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~ 77 (514)
T 3rlf_F 16 KWSVLGLLGLLVGYLVVLMYAQGEY----LFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 77 (514)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTTCH----HHHHHHHHHHHHHHHHHHCGGGCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCccH----HHHHHHHHHHHHHeEEEECCCcccHHHHHHHHHHHHH
Confidence 7889999999999888877653222 2223456667777888888887777776444433333
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=3.54 E-value=2.2e+03 Score=19.47 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=4.5
Q ss_pred HhhhhhHHHHH
Q 021784 152 LATFGYVAVYF 162 (307)
Q Consensus 152 ~~t~~yv~vyf 162 (307)
+.++.++..|.
T Consensus 373 ~~~~~~~~~y~ 383 (511)
T 4djk_A 373 LTVVIYLCAYF 383 (511)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 7
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=3.04 E-value=5.5e+02 Score=19.32 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 021784 281 LQAADTVLKEVIFLDAAQ 298 (307)
Q Consensus 281 p~AlSnV~kE~~fkd~~~ 298 (307)
+-.+.|++||+++++..-
T Consensus 12 ~eTL~nLIeefv~RegtD 29 (78)
T 1y0n_A 12 ADTLNNLLEDFVTREGTD 29 (78)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhccccc
Confidence 567899999999997654
No 8
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=4.25 E-value=2.8e+02 Score=18.83 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=13.0
Q ss_pred ccchHHHHHHHHHHHhccc
Q 021784 216 SQTFLVWQILLSIIFLGRR 234 (307)
Q Consensus 216 ~q~~IP~tmllS~ifLk~R 234 (307)
....+-..+++|.+++|||
T Consensus 25 ~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 25 GGVVIATVIVITLVMLKKK 43 (43)
Confidence 4455666677777788776
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=2.57 E-value=8.2e+02 Score=16.31 Aligned_cols=10 Identities=40% Similarity=0.477 Sum_probs=5.3
Q ss_pred HHHHHHhccc
Q 021784 225 LLSIIFLGRR 234 (307)
Q Consensus 225 llS~ifLk~R 234 (307)
+.-++|+|+|
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3445556665
No 10
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=2.46 E-value=8e+02 Score=14.57 Aligned_cols=17 Identities=47% Similarity=0.796 Sum_probs=11.6
Q ss_pred ccccCCCCCCCCCceee
Q 021784 16 HSLLQSPKPSPKAPVSC 32 (307)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (307)
|+-+|+|.+.|+.-+.+
T Consensus 5 hsivqppapppnafvei 21 (26)
T 2lkw_A 5 HSIVQPPAPPPNAFVEI 21 (26)
T ss_pred cccccCCCcCCCeeEEE
Confidence 56677777667766655
Done!