Query 021784
Match_columns 307
No_of_seqs 141 out of 207
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 09:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 32.4 16 0.0011 31.2 3.6 64 185-252 4-67 (248)
2 d1vf5c3 f.23.23.1 (C:250-286) 6.6 1.7E+02 0.013 17.7 2.7 31 266-296 3-33 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 6.3 2.5E+02 0.018 17.6 3.4 30 267-296 3-32 (45)
4 d1rk8b_ d.232.1.1 (B:) Mago na 5.0 79 0.0057 24.6 0.3 14 55-68 30-43 (141)
5 d1y0na_ d.291.1.1 (A:) Hypothe 4.2 1.7E+02 0.013 20.3 1.7 18 281-298 12-29 (78)
6 d2i5nh2 f.23.10.1 (H:1-36) Pho 3.5 2.5E+02 0.019 16.4 1.7 23 206-228 9-31 (36)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.5 2.4E+02 0.017 23.2 2.2 55 119-173 30-86 (248)
8 d2g9hd1 b.40.2.2 (D:4-86) Ente 3.1 1.3E+02 0.0091 21.4 -0.1 14 37-50 22-35 (83)
9 d1fnua1 b.40.2.2 (A:1-107) Str 2.7 1.3E+02 0.0093 22.3 -0.4 14 37-50 36-49 (107)
10 d1vlaa_ d.227.1.2 (A:) Hypothe 2.7 4.8E+02 0.035 18.2 3.0 58 80-137 10-67 (144)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=32.40 E-value=16 Score=31.18 Aligned_cols=64 Identities=19% Similarity=0.096 Sum_probs=45.2
Q ss_pred cchHhhHHHHHHHHHHHhhhccccccHHHHhccchHHHHHHHHHHHhcccccccccchhhheeeceee
Q 021784 185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252 (307)
Q Consensus 185 kfli~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmllS~ifLk~RY~~~qi~G~~IVl~Gliv 252 (307)
|++++|++++++.++.+.++..=.-.. --..+..+++.-++|+.+|...++|+-=.++.+.+++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 788999999999988777665322221 2245667777889999999998888865555544433
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.63 E-value=1.7e+02 Score=17.68 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784 266 GAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (307)
Q Consensus 266 ~~~vlw~lL~llS~ip~AlSnV~kE~~fkd~ 296 (307)
.+.+.|.+.++++.++.-+--|+|-+.|.+.
T Consensus 3 p~Rv~gl~~F~~~v~laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 3 PNRVKWMIAFICLVMLAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999998877653
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.29 E-value=2.5e+02 Score=17.57 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 021784 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (307)
Q Consensus 267 ~~vlw~lL~llS~ip~AlSnV~kE~~fkd~ 296 (307)
+.+.|.++++++.++.-+--|+|-+.|.+.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999888754
No 4
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.97 E-value=79 Score=24.60 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=3.4
Q ss_pred cccccCCCCCCCch
Q 021784 55 NYYHNNSNYKNNNV 68 (307)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (307)
-=|-|||||||.+-
T Consensus 30 lrYaNnSnYknd~~ 43 (141)
T d1rk8b_ 30 LRYANNSNYKNDTM 43 (141)
T ss_dssp EEEEC--------C
T ss_pred eeeecccCccchhh
Confidence 34678999999753
No 5
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.24 E-value=1.7e+02 Score=20.32 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 021784 281 LQAADTVLKEVIFLDAAQ 298 (307)
Q Consensus 281 p~AlSnV~kE~~fkd~~~ 298 (307)
+-++.|++||+++++..-
T Consensus 12 ~etL~~lIeeFv~REGTD 29 (78)
T d1y0na_ 12 ADTLNNLLEDFVTREGTD 29 (78)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 567899999999997654
No 6
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.46 E-value=2.5e+02 Score=16.36 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.1
Q ss_pred cccccHHHHhccchHHHHHHHHH
Q 021784 206 ILSGASIPILSQTFLVWQILLSI 228 (307)
Q Consensus 206 ytsgs~~~LL~q~~IP~tmllS~ 228 (307)
++.......-.|+.+.||.++-+
T Consensus 9 hldiaqlvwyaqwlviwtvvlly 31 (36)
T d2i5nh2 9 HLDIAQLVWYAQWLVIWTVVLLY 31 (36)
T ss_dssp GCBHHHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHh
Confidence 44444445556888888887754
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=2.4e+02 Score=23.24 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHhCCCC-ChhHHHHHHhhhhhHHHHHHHHHH-HHhcCc
Q 021784 119 IAAAVTVLLGVGNRVLYKLALVPLK-HYPFFLAQLATFGYVAVYFSILYL-RYHAGI 173 (307)
Q Consensus 119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~-nYp~Fl~q~~t~~yv~vyf~Il~~-r~~~~~ 173 (307)
++++.++++...|-|..-....|++ =+|..+-.+...+|-++|...+-+ .|..+.
T Consensus 30 ~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh 86 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTN 86 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTT
T ss_pred HHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCc
Confidence 3445556666777666544445444 555555555556666666544422 455443
No 8
>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus aureus [TaxId: 1280]}
Probab=3.05 E-value=1.3e+02 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.4
Q ss_pred cccccCCCceEEEe
Q 021784 37 HHANQRLPTTLLFR 50 (307)
Q Consensus 37 ~~~~~~~~~~~~~~ 50 (307)
..-||.|.-.|++.
T Consensus 22 ks~dq~Lsh~Lif~ 35 (83)
T d2g9hd1 22 IDKNLPSANQLEFS 35 (83)
T ss_dssp EBCCCSCSSEEEEE
T ss_pred ccCCccccceEEec
Confidence 34555555555553
No 9
>d1fnua1 b.40.2.2 (A:1-107) Streptococcal pyrogenic exotoxin A1 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.67 E-value=1.3e+02 Score=22.28 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=6.4
Q ss_pred cccccCCCceEEEe
Q 021784 37 HHANQRLPTTLLFR 50 (307)
Q Consensus 37 ~~~~~~~~~~~~~~ 50 (307)
...||-|.-.|+++
T Consensus 36 ~s~dq~L~hdLif~ 49 (107)
T d1fnua1 36 KSVDQLLSHDLIYN 49 (107)
T ss_dssp ECCBCSSTTEEEEC
T ss_pred ccCCccccceeEEe
Confidence 33444444444444
No 10
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=2.66 E-value=4.8e+02 Score=18.24 Aligned_cols=58 Identities=16% Similarity=-0.063 Sum_probs=0.0
Q ss_pred ccCccccccccchhhcccccceeeecccccccccchHHHHHHHHHHHhhhhhHHHHHH
Q 021784 80 RSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKL 137 (307)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl 137 (307)
+|.|+..+.+.......-....-.+..|..++-.-..++++.++-....+...++-|+
T Consensus 10 ~w~g~~~~~~~~~~G~~i~~D~p~~~GG~~~g~~P~elllaala~C~~~~~~~~a~~~ 67 (144)
T d1vlaa_ 10 RWIGNMMFHVRTDSNHDVLMDTKEEVGGKDAAPRPLELVLTGLMGCTGMDVVSILRKM 67 (144)
T ss_dssp EEEETTEEEEECTTSCEEEECCCGGGTCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCcEEEEEeCCCCEEEecCCcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhc
Done!