BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021785
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 106/163 (65%), Gaps = 10/163 (6%)

Query: 27  PGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKVSTVGDKEWYFFCI 86
           PGFRF+PTDEEL+  YL RK      S+++I + D+YK+DPW LP  +  G+KEWYFF  
Sbjct: 22  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81

Query: 87  RGRKYRNSIRPNRVTGSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDW 146
           R RKY N  RPNRV GSG+WKATG DK I +     + +G+KK+LV+Y G A KGTKT+W
Sbjct: 82  RDRKYPNGSRPNRVAGSGYWKATGTDKIISTE---GQRVGIKKALVFYIGKAPKGTKTNW 138

Query: 147 MMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRIFKRTPSYKK 189
           +MHE+RL    +    +   D       W LCRI+K+  S +K
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDD-------WVLCRIYKKQSSAQK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 106/163 (65%), Gaps = 10/163 (6%)

Query: 27  PGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKVSTVGDKEWYFFCI 86
           PGFRF+PTDEEL+  YL RK      S+++I + D+YK+DPW LP  +  G+KEWYFF  
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78

Query: 87  RGRKYRNSIRPNRVTGSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDW 146
           R RKY N  RPNRV GSG+WKATG DK I +     + +G+KK+LV+Y G A KGTKT+W
Sbjct: 79  RDRKYPNGSRPNRVAGSGYWKATGTDKIISTE---GQRVGIKKALVFYIGKAPKGTKTNW 135

Query: 147 MMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRIFKRTPSYKK 189
           +MHE+RL    +    +   D       W LCRI+K+  S +K
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDD-------WVLCRIYKKQSSAQK 171


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 27  PGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKVSTVGDKEWYFFCI 86
           PGFRFHPTD+ELV  YL RK   + + + II + D+YK+DPWDLP+ +  G +EWYFF  
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP 76

Query: 87  RGRKYRNSIRPNRVTGSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDW 146
           R RKY N  RPNR  G+G+WKATG DKP+         +G+KK+LV+Y G A +G KTDW
Sbjct: 77  RDRKYPNGSRPNRAAGNGYWKATGADKPVAPR---GRTLGIKKALVFYAGKAPRGVKTDW 133

Query: 147 MMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRIFKRTPSYKK 189
           +MHE+RL   G+    +    +    + W LCR++ +   ++K
Sbjct: 134 IMHEYRLADAGRAAAGAKKGSL--RLDDWVLCRLYNKKNEWEK 174


>pdb|2P14|A Chain A, Crystal Structure Of Small Subunit (r.bspd6i2) Of The
           Heterodimeric Restriction Endonuclease R.bspd6i
          Length = 192

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 175 WTLCRIFKRTPSYKKYTPNWK-DSSTVAAANAT 206
           W   R+FK+  SYK   PN+K D S     NA 
Sbjct: 23  WNTYRVFKKLGSYKNLVPNFKLDDSGHPIGNAI 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,835,282
Number of Sequences: 62578
Number of extensions: 345383
Number of successful extensions: 648
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 4
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)