Query 021785
Match_columns 307
No_of_seqs 180 out of 959
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.4E-55 1.5E-59 384.3 14.6 163 20-187 10-172 (174)
2 1ut7_A No apical meristem prot 100.0 3.5E-55 1.2E-59 384.2 12.2 157 22-188 14-170 (171)
3 1ldd_A APC2WHB, anaphase promo 23.5 46 0.0016 24.6 2.4 28 25-53 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 17.5 1.6E+02 0.0054 22.7 4.3 38 32-73 50-87 (104)
5 4dox_A Coat protein; all helix 11.5 80 0.0027 28.2 1.3 20 28-47 158-177 (226)
6 3nr5_A MAF1, repressor of RNA 11.3 62 0.0021 27.5 0.5 13 57-69 119-131 (164)
7 3fyr_A Sporulation inhibitor S 11.1 1.1E+02 0.0039 20.7 1.7 24 33-58 6-29 (48)
8 3daq_A DHDPS, dihydrodipicolin 9.9 85 0.0029 28.3 1.0 20 24-43 102-121 (292)
9 3m5v_A DHDPS, dihydrodipicolin 9.5 90 0.0031 28.3 1.0 19 24-42 108-126 (301)
10 2jz2_A SSL0352 protein; SH3-li 9.4 48 0.0017 24.0 -0.7 18 276-293 30-47 (66)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.4e-55 Score=384.34 Aligned_cols=163 Identities=47% Similarity=0.974 Sum_probs=135.2
Q ss_pred CCCCCCCCCceecCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCCCccCCCCceEEEEeeeccccCCCCCCcc
Q 021785 20 NHEEVMLPGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKVSTVGDKEWYFFCIRGRKYRNSIRPNR 99 (307)
Q Consensus 20 ~~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~pl~~~~I~~~DVY~~~PwdLp~~~~~gd~ewYFFs~r~~k~~~g~R~~R 99 (307)
.....|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++|||||++.+||++|.|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 33456999999999999999999999999999999999999999999999999877788899999999999999999999
Q ss_pred cccCceeeecCCCcceecCCCCceeeEEEEEEeeecCCCCCCCccCceeeeEEcCCCCCCCCCCCCccccccCCceEEEE
Q 021785 100 VTGSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCR 179 (307)
Q Consensus 100 ~tg~G~Wk~~G~~k~I~~~~~~g~~IG~Kk~L~Fy~g~~~~~~kT~W~MhEYrL~~~~~~~~~~~~~~~~~e~~~~VLCR 179 (307)
++++||||++|++++|... |.+||+||+|+||.|+++++.||+|+||||+|......... + .......++|||||
T Consensus 90 ~t~~G~WkatG~dk~I~~~---g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~-~-~~~~~~~~~wVlCr 164 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR---GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAG-A-KKGSLRLDDWVLCR 164 (174)
T ss_dssp EETTEEEEECSCCEEECCS---SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-------------CCSSEEEEE
T ss_pred ecCCceEccCCCCcEEeeC---CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccc-c-ccCCCCCCCEEEEE
Confidence 9999999999999999864 78999999999999999999999999999999887533210 0 11113457899999
Q ss_pred EEeeCCCC
Q 021785 180 IFKRTPSY 187 (307)
Q Consensus 180 Ifkk~~~~ 187 (307)
||+|++..
T Consensus 165 vf~K~~~~ 172 (174)
T 3ulx_A 165 LYNKKNEW 172 (174)
T ss_dssp EEESCC--
T ss_pred EEEcCCCc
Confidence 99987653
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.5e-55 Score=384.16 Aligned_cols=157 Identities=50% Similarity=0.950 Sum_probs=130.7
Q ss_pred CCCCCCCceecCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCCCccCCCCceEEEEeeeccccCCCCCCcccc
Q 021785 22 EEVMLPGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKVSTVGDKEWYFFCIRGRKYRNSIRPNRVT 101 (307)
Q Consensus 22 ~~~lpPGfRF~PTDeELV~~YL~~Ki~g~pl~~~~I~~~DVY~~~PwdLp~~~~~gd~ewYFFs~r~~k~~~g~R~~R~t 101 (307)
...|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++|||||++.++|++|.|++|+|
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 34699999999999999999999999999999999999999999999999987778899999999999999999999999
Q ss_pred cCceeeecCCCcceecCCCCceeeEEEEEEeeecCCCCCCCccCceeeeEEcCCCCCCCCCCCCccccccCCceEEEEEE
Q 021785 102 GSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRIF 181 (307)
Q Consensus 102 g~G~Wk~~G~~k~I~~~~~~g~~IG~Kk~L~Fy~g~~~~~~kT~W~MhEYrL~~~~~~~~~~~~~~~~~e~~~~VLCRIf 181 (307)
++|+||++|++++|... +.+||+||+|+||+|+++++.||+|+||||+|...... ......++|||||||
T Consensus 94 ~~G~Wk~tG~~k~I~~~---~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~-------~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTE---GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR-------NGSTKLDDWVLCRIY 163 (171)
T ss_dssp TTEEEEEEEEEEEEEET---TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------------CCEEEEEEE
T ss_pred CCCEEeccCCCceEEec---CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc-------cCcccCCCEEEEEEE
Confidence 99999999999999975 69999999999999999999999999999999876521 111345789999999
Q ss_pred eeCCCCC
Q 021785 182 KRTPSYK 188 (307)
Q Consensus 182 kk~~~~r 188 (307)
+|+.+.+
T Consensus 164 ~k~~~~~ 170 (171)
T 1ut7_A 164 KKQSSAQ 170 (171)
T ss_dssp ECC----
T ss_pred EcCCCCC
Confidence 9886543
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=23.51 E-value=46 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCCceecC-ChHHHHHHHHHHHHhCCCCC
Q 021785 25 MLPGFRFHP-TDEELVGFYLRRKVEKKPIS 53 (307)
Q Consensus 25 lpPGfRF~P-TDeELV~~YL~~Ki~g~pl~ 53 (307)
.+.|+.|.. |++||-. ||..|+....|.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 355899999 8888877 699999887654
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.51 E-value=1.6e+02 Score=22.69 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCCCc
Q 021785 32 HPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLPKV 73 (307)
Q Consensus 32 ~PTDeELV~~YL~~Ki~g~pl~~~~I~~~DVY~~~PwdLp~~ 73 (307)
|-|-.||++.-...-..|+|||. +.|+-+..|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 56788999887888889999994 568888889999864
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=11.49 E-value=80 Score=28.19 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=15.0
Q ss_pred CceecCChHHHHHHHHHHHH
Q 021785 28 GFRFHPTDEELVGFYLRRKV 47 (307)
Q Consensus 28 GfRF~PTDeELV~~YL~~Ki 47 (307)
|..+.||++|+|.|=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998444443
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=11.31 E-value=62 Score=27.51 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.7
Q ss_pred eeeccCCCCCCCC
Q 021785 57 IKQADIYKYDPWD 69 (307)
Q Consensus 57 I~~~DVY~~~Pwd 69 (307)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5678999999983
No 7
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=11.07 E-value=1.1e+02 Score=20.73 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCcCcee
Q 021785 33 PTDEELVGFYLRRKVEKKPISIEIIK 58 (307)
Q Consensus 33 PTDeELV~~YL~~Ki~g~pl~~~~I~ 58 (307)
=||+.||..|.+.+-.+ |..+||.
T Consensus 6 LSDe~LiesY~~A~el~--L~~dFI~ 29 (48)
T 3fyr_A 6 LSDELLIESYFKATEMN--LNRDFIE 29 (48)
T ss_dssp SCHHHHHHHHHHHHHTT--CCHHHHH
T ss_pred hcHHHHHHHHHHHHHhC--CCHHHHH
Confidence 47999999998877665 4455554
No 8
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=9.91 E-value=85 Score=28.31 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=15.8
Q ss_pred CCCCCceecCChHHHHHHHH
Q 021785 24 VMLPGFRFHPTDEELVGFYL 43 (307)
Q Consensus 24 ~lpPGfRF~PTDeELV~~YL 43 (307)
++.|-|.|.||+++|+.||-
T Consensus 102 lv~~P~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 102 MLITPYYNKTNQRGLVKHFE 121 (292)
T ss_dssp EEECCCSSCCCHHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHHH
Confidence 34566778999999999863
No 9
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=9.52 E-value=90 Score=28.29 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.5
Q ss_pred CCCCCceecCChHHHHHHH
Q 021785 24 VMLPGFRFHPTDEELVGFY 42 (307)
Q Consensus 24 ~lpPGfRF~PTDeELV~~Y 42 (307)
++.|-|.|.||+++|+.||
T Consensus 108 lv~~P~y~~~s~~~l~~~f 126 (301)
T 3m5v_A 108 LSVAPYYNKPTQQGLYEHY 126 (301)
T ss_dssp EEECCCSSCCCHHHHHHHH
T ss_pred EEcCCCCCCCCHHHHHHHH
Confidence 4556777899999999986
No 10
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=9.41 E-value=48 Score=23.97 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=14.3
Q ss_pred cCCCccccCCChhhhhcc
Q 021785 276 LNGDDFFTNGNWDELRSV 293 (307)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ 293 (307)
..+.-+|..||||-|..+
T Consensus 30 gkaaVLFEGGnWDKLVTf 47 (66)
T 2jz2_A 30 GKAAVLFENGNWDKLVTF 47 (66)
T ss_dssp TEEEEEEESSSCEEEEEE
T ss_pred CcEEEEecCCCceeEEEE
Confidence 455678999999988765
Done!