BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021787
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IW8|A Chain A, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|B Chain B, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|C Chain C, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|D Chain D, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|E Chain E, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|F Chain F, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
          Length = 231

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 22/129 (17%)

Query: 108 LITGVITDAIKDAVGRPRPDFFWRCFPDGKGVFDNVTRNVVCTGQNHVIKEGHKSFPSGH 167
           L+T +I DA  D   R   D + R  P     F  V+     T Q+ + K G  S+PSGH
Sbjct: 98  LLTNMIEDA-GDLATRSAKDHYMRIRP---FAFYGVS-TCNTTEQDKLSKNG--SYPSGH 150

Query: 168 TSWSFAGLGFLSLYLSGKIRVFDRRGHVAKLCIVFLPFLLAALIGVSRVDDYWHHWQDVF 227
           TS  +A    L+     +     +RG+                +G SRV   +H   DV 
Sbjct: 151 TSTGWATALVLAEINPQRQNEILKRGYE---------------LGQSRVICGYHWQSDVD 195

Query: 228 GGAIIGTIV 236
              ++G+ V
Sbjct: 196 AARVVGSAV 204


>pdb|2ZII|A Chain A, Crystal Structure Of Yeast Vps74-N-Term Truncation Variant
 pdb|2ZII|B Chain B, Crystal Structure Of Yeast Vps74-N-Term Truncation Variant
 pdb|2ZII|C Chain C, Crystal Structure Of Yeast Vps74-N-Term Truncation Variant
 pdb|2ZII|D Chain D, Crystal Structure Of Yeast Vps74-N-Term Truncation Variant
          Length = 288

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 157 KEGHKSFPSGHTSWSFAGLGFLSLYLSGKIRVFD 190
           +EG+ SF +   S++  G   + L L GKIR+ D
Sbjct: 24  REGYLSFWNDSISYALRGCIIIELALRGKIRILD 57


>pdb|2ZIH|A Chain A, Crystal Structure Of Yeast Vps74
 pdb|2ZIH|B Chain B, Crystal Structure Of Yeast Vps74
 pdb|2ZIH|C Chain C, Crystal Structure Of Yeast Vps74
 pdb|2ZIH|D Chain D, Crystal Structure Of Yeast Vps74
          Length = 347

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 157 KEGHKSFPSGHTSWSFAGLGFLSLYLSGKIRVFD 190
           +EG+ SF +   S++  G   + L L GKIR+ D
Sbjct: 83  REGYLSFWNDSISYALRGCIIIELALRGKIRILD 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.146    0.493 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,313,857
Number of Sequences: 62578
Number of extensions: 387052
Number of successful extensions: 784
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 4
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)