Query 021787
Match_columns 307
No_of_seqs 307 out of 2056
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.8 4.2E-19 1.4E-23 157.0 8.6 100 112-240 97-196 (230)
2 1d2t_A Acid phosphatase; all a 99.8 1.3E-18 4.4E-23 153.9 9.8 101 112-241 109-209 (231)
3 1qi9_A Protein (vanadium bromo 99.4 9.2E-14 3.2E-18 135.3 6.8 120 114-245 377-510 (556)
4 1up8_A Vanadium-dependent brom 99.2 6.5E-11 2.2E-15 115.5 11.5 87 158-244 478-576 (598)
5 3bb0_A Vanadium chloroperoxida 99.1 3.7E-10 1.3E-14 111.3 10.3 128 105-236 340-511 (609)
6 2ksd_A Aerobic respiration con 15.2 1.4E+02 0.0048 22.5 3.5 38 205-242 34-72 (115)
7 3arc_E Cytochrome B559 subunit 11.1 3.1E+02 0.011 19.1 3.9 13 116-128 41-53 (83)
8 2lx0_A Membrane fusion protein 11.0 2.4E+02 0.0081 15.5 3.6 13 220-232 2-14 (32)
9 1jb0_I Photosystem 1 reaction 8.6 3.7E+02 0.013 16.0 3.3 24 64-87 8-31 (38)
10 2ifo_A Inovirus; helical virus 8.2 2.7E+02 0.0094 17.3 2.5 19 227-245 25-43 (46)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.77 E-value=4.2e-19 Score=156.95 Aligned_cols=100 Identities=24% Similarity=0.176 Sum_probs=73.9
Q ss_pred HHHHHHHhhhCCCCCccccccCCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhccccccC
Q 021787 112 VITDAIKDAVGRPRPDFFWRCFPDGKGVFDNVTRNVVCTGQNHVIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIRVFDR 191 (307)
Q Consensus 112 ~~~~~lK~~~grpRP~~l~~c~p~~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l~~~~~~~~~ 191 (307)
+++..+|..++|+||+.... ...|.+......+.++||||||++.+++.+.++..++..+
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~--------------~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------ 156 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFN--------------HSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER------ 156 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTT--------------CCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG------
T ss_pred HHHHHHHHHhCCCCcCccCC--------------CCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH------
Confidence 78999999999999985421 0112211111235789999999999999888776653211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhHHHHHHHHHHHHHH
Q 021787 192 RGHVAKLCIVFLPFLLAALIGVSRVDDYWHHWQDVFGGAIIGTIVSFFC 240 (307)
Q Consensus 192 ~~~~~~~~l~~~~l~~a~lv~~SRv~~g~H~~sDVl~G~~lG~~~a~~~ 240 (307)
+. ..+.++.++|+||||+|+||++||++|+++|..++...
T Consensus 157 ----~~-----~~~~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~~ 196 (230)
T 2ipb_A 157 ----AQ-----ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARL 196 (230)
T ss_dssp ----HH-----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----HH-----HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 11 12457889999999999999999999999999988765
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.76 E-value=1.3e-18 Score=153.92 Aligned_cols=101 Identities=26% Similarity=0.229 Sum_probs=74.5
Q ss_pred HHHHHHHhhhCCCCCccccccCCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhccccccC
Q 021787 112 VITDAIKDAVGRPRPDFFWRCFPDGKGVFDNVTRNVVCTGQNHVIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIRVFDR 191 (307)
Q Consensus 112 ~~~~~lK~~~grpRP~~l~~c~p~~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l~~~~~~~~~ 191 (307)
+++..+|..++|+||+.... ...|........+.++||||||++.+++.+.++..++..+
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~--------------~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------ 168 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYG--------------VSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQR------ 168 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHT--------------CCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGG------
T ss_pred HHHHHHHHHhCCCCcCccCC--------------CCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH------
Confidence 78899999999999985421 0112110011136789999999999999888877653221
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhHHHHHHHHHHHHHHH
Q 021787 192 RGHVAKLCIVFLPFLLAALIGVSRVDDYWHHWQDVFGGAIIGTIVSFFCY 241 (307)
Q Consensus 192 ~~~~~~~~l~~~~l~~a~lv~~SRv~~g~H~~sDVl~G~~lG~~~a~~~~ 241 (307)
. . ..+.++..+|+||||.|+||++||++|+++|..++..++
T Consensus 169 ----~-~----~~~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~~ 209 (231)
T 1d2t_A 169 ----Q-N----EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLH 209 (231)
T ss_dssp ----H-H----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----H-H----HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 235678899999999999999999999999999987654
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.43 E-value=9.2e-14 Score=135.26 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=75.9
Q ss_pred HHHHHhhhCCCCCccccccCCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhcc--ccccC
Q 021787 114 TDAIKDAVGRPRPDFFWRCFPDGKGVFDNVTRNVVCTGQNHVIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKI--RVFDR 191 (307)
Q Consensus 114 ~~~lK~~~grpRP~~l~~c~p~~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l~~~~--~~~~~ 191 (307)
++++|.++.|+||.... ++. ...... ........++|||||||+.+++++.++..++..+. ..+..
T Consensus 377 ~~lLK~l~~RpRP~~~~---~~~----~~Ll~~-----~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~ 444 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPN---NEV----TYLLPQ-----AIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPD 444 (556)
T ss_dssp HHHHHHHHHHHHHHSGG---GCC----CCCCCB-----SSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSS
T ss_pred hhHHHhhhccCCCCCCc---ccc----ceeeec-----ccccCCCCCCCCChHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 45899999999996311 000 000000 00000256899999999999999999887764220 00000
Q ss_pred C-----chhHH-----HHHH--HHHHHHHHHHHHHHHhCCCCChhHhHHHHHHHHHHHHHHHHHhc
Q 021787 192 R-----GHVAK-----LCIV--FLPFLLAALIGVSRVDDYWHHWQDVFGGAIIGTIVSFFCYLQFF 245 (307)
Q Consensus 192 ~-----~~~~~-----~~l~--~~~l~~a~lv~~SRv~~g~H~~sDVl~G~~lG~~~a~~~~~~~~ 245 (307)
+ ....+ ..+. .....++..+|+||||.|+||++||++|+++|..++..+++...
T Consensus 445 r~~~~~~G~~r~~~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~~ 510 (556)
T 1qi9_A 445 PVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQEL 510 (556)
T ss_dssp CEEECTTSSSEEECCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0011 11345788999999999999999999999999999988776443
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.20 E-value=6.5e-11 Score=115.49 Aligned_cols=87 Identities=23% Similarity=0.220 Sum_probs=63.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhhcccc-----ccCCc--hhH-----HHHHHHHHHHHHHHHHHHHHhCCCCChhH
Q 021787 158 EGHKSFPSGHTSWSFAGLGFLSLYLSGKIRV-----FDRRG--HVA-----KLCIVFLPFLLAALIGVSRVDDYWHHWQD 225 (307)
Q Consensus 158 ~~~~SFPSGHas~a~~~~~~l~l~l~~~~~~-----~~~~~--~~~-----~~~l~~~~l~~a~lv~~SRv~~g~H~~sD 225 (307)
..+.|||||||+.+++.+..+..++...... ....+ +.. .+.+......++..+|+||+|.|+||++|
T Consensus 478 P~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSD 557 (598)
T 1up8_A 478 PFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSD 557 (598)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHH
Confidence 4679999999999999999988877654310 00000 000 00111234668899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 021787 226 VFGGAIIGTIVSFFCYLQF 244 (307)
Q Consensus 226 Vl~G~~lG~~~a~~~~~~~ 244 (307)
|++|+.+|..++..+.+..
T Consensus 558 VlAG~~LG~aVa~~vl~~~ 576 (598)
T 1up8_A 558 QFESLLLGEQVAIGILEEQ 576 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=99.07 E-value=3.7e-10 Score=111.29 Aligned_cols=128 Identities=17% Similarity=0.062 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCccccccCCC---CCCcccccccceeecC-CcccccCCCCCCCCchHHHHHHHHHHHHH
Q 021787 105 YSVLITGVITDAIKDAVGRPRPDFFWRCFPD---GKGVFDNVTRNVVCTG-QNHVIKEGHKSFPSGHTSWSFAGLGFLSL 180 (307)
Q Consensus 105 ~~~~~~~~~~~~lK~~~grpRP~~l~~c~p~---~~~~~~~~~~~~~c~~-~~~~~~~~~~SFPSGHas~a~~~~~~l~l 180 (307)
.++.-+.+.+..+|..+.|+||...-+.... ..+.+.+..... .+ +.......+.|||||||+.+++++.+|..
T Consensus 340 ~A~~DA~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~--~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~ 417 (609)
T 3bb0_A 340 VACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPA--TNTNDIPFKPPFPAYPSGHATFGGAVFQMVRR 417 (609)
T ss_dssp HHHHHHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCC--TTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcccc--cccccccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3333355566779999999999743221000 000111110000 00 00012357899999999999999999998
Q ss_pred HHh-----------hccccc------------------cCCch-----------hHHHHHHHHHHHHHHHHHHHHHhCCC
Q 021787 181 YLS-----------GKIRVF------------------DRRGH-----------VAKLCIVFLPFLLAALIGVSRVDDYW 220 (307)
Q Consensus 181 ~l~-----------~~~~~~------------------~~~~~-----------~~~~~l~~~~l~~a~lv~~SRv~~g~ 220 (307)
++. .++... +..+. ..|.. .....++..+|+||+|.|+
T Consensus 418 ~f~~~~~~~~~~G~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~--~sl~~~A~e~g~SRIY~GV 495 (609)
T 3bb0_A 418 YYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHF--DSAWELMFENAISRIFLGV 495 (609)
T ss_dssp HHBTTTBCCCTTSCCCCCEEEEECTTSSSSCEEESSCCCTTSCGGGSCEEECCCCEEEE--SCHHHHHHHHHHHHHHTTS
T ss_pred HHhcccccccccCccccceeecccccccccccccccccccccccccccccccccchhhH--HHHHHHHHHHhhhhheeee
Confidence 873 111100 00000 00000 0123468899999999999
Q ss_pred CChhHhHHHHHHHHHH
Q 021787 221 HHWQDVFGGAIIGTIV 236 (307)
Q Consensus 221 H~~sDVl~G~~lG~~~ 236 (307)
||++||++|..+|..+
T Consensus 496 HypsDv~aG~~lG~~~ 511 (609)
T 3bb0_A 496 HWRFDAAAARDILIPT 511 (609)
T ss_dssp SCHHHHSCHHHHBCBC
T ss_pred eCHHHHHHHHHHHHhh
Confidence 9999999999999776
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=15.24 E-value=1.4e+02 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCChhHhHHHHHHHHHHH-HHHHH
Q 021787 205 FLLAALIGVSRVDDYWHHWQDVFGGAIIGTIVS-FFCYL 242 (307)
Q Consensus 205 l~~a~lv~~SRv~~g~H~~sDVl~G~~lG~~~a-~~~~~ 242 (307)
++..+=+.++-+..|.=++.|++...++|.+.+ +..|.
T Consensus 34 ~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli~aP~viYF 72 (115)
T 2ksd_A 34 LAIVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYF 72 (115)
T ss_dssp HHHHHHHHHHHHSCCCSSSSSCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677889999999999999999999999 44444
No 7
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=11.12 E-value=3.1e+02 Score=19.10 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=10.1
Q ss_pred HHHhhhCCCCCcc
Q 021787 116 AIKDAVGRPRPDF 128 (307)
Q Consensus 116 ~lK~~~grpRP~~ 128 (307)
+.-..+|-|||+-
T Consensus 41 LaYdvFGtPrpne 53 (83)
T 3arc_E 41 LAYDVFGTPRPDS 53 (83)
T ss_dssp HHHHHHTCCCTTS
T ss_pred cceeccCCCCccc
Confidence 4457899999983
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.04 E-value=2.4e+02 Score=15.51 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.1
Q ss_pred CCChhHhHHHHHH
Q 021787 220 WHHWQDVFGGAII 232 (307)
Q Consensus 220 ~H~~sDVl~G~~l 232 (307)
.|...+|++|.+-
T Consensus 2 khtiweviaglva 14 (32)
T 2lx0_A 2 KHTIWEVIAGLVA 14 (32)
T ss_dssp CSSSHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 5888889998754
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=8.60 E-value=3.7e+02 Score=16.00 Aligned_cols=24 Identities=21% Similarity=0.663 Sum_probs=17.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Q 021787 64 NTVPFWAVPLIAILLPFIVVHVYY 87 (307)
Q Consensus 64 ~~i~~~~l~~~~~~~p~~i~~~~~ 87 (307)
...|...++.+++++|.+......
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf 31 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHH
Confidence 446777888888888888766543
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=8.23 E-value=2.7e+02 Score=17.30 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 021787 227 FGGAIIGTIVSFFCYLQFF 245 (307)
Q Consensus 227 l~G~~lG~~~a~~~~~~~~ 245 (307)
++++++|..++...|.+.+
T Consensus 25 IG~aVLgV~v~i~v~k~IR 43 (46)
T 2ifo_A 25 IGGAVLTVMVGIKVYKWVR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776654
Done!