Query 021788
Match_columns 307
No_of_seqs 248 out of 1741
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.9E-37 1.5E-41 271.4 26.0 176 110-293 102-279 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.1E-34 2.5E-39 270.0 23.3 179 113-294 105-289 (612)
3 KOG0148 Apoptosis-promoting RN 100.0 2.2E-34 4.7E-39 234.9 18.5 172 113-293 60-242 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-33 7.2E-38 252.5 24.1 177 114-291 88-351 (352)
5 KOG0144 RNA-binding protein CU 100.0 4.6E-34 1E-38 246.5 15.2 177 112-294 31-211 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-32 4.4E-37 247.4 21.9 169 114-290 2-172 (352)
7 TIGR01622 SF-CC1 splicing fact 100.0 5.8E-31 1.3E-35 245.8 21.4 173 112-288 86-265 (457)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-30 2.7E-35 242.8 23.3 170 113-292 56-310 (578)
9 KOG0117 Heterogeneous nuclear 100.0 5.7E-31 1.2E-35 228.4 18.4 174 113-295 81-337 (506)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-30 3.7E-35 248.2 20.9 169 117-292 2-170 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.9E-30 8.5E-35 245.7 20.7 177 113-292 176-367 (562)
12 KOG0145 RNA-binding protein EL 100.0 4.1E-30 8.8E-35 208.9 16.6 175 111-293 37-213 (360)
13 KOG0131 Splicing factor 3b, su 100.0 3.4E-29 7.3E-34 193.5 13.3 177 111-294 5-182 (203)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.4E-28 1.4E-32 225.4 21.1 164 114-290 1-175 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.3E-28 2E-32 224.4 21.7 168 112-289 272-480 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.1E-27 8.9E-32 222.8 21.7 169 111-289 171-375 (509)
17 KOG0145 RNA-binding protein EL 100.0 2.7E-27 5.8E-32 192.5 16.5 176 114-290 126-359 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.1E-27 1.8E-31 220.8 22.2 173 113-288 293-501 (509)
19 KOG0146 RNA-binding protein ET 99.9 2.5E-27 5.4E-32 193.4 13.3 180 112-293 16-369 (371)
20 KOG0127 Nucleolar protein fibr 99.9 8.3E-27 1.8E-31 207.1 16.7 171 116-290 6-197 (678)
21 KOG0127 Nucleolar protein fibr 99.9 3E-26 6.6E-31 203.5 17.8 172 115-290 117-379 (678)
22 KOG0124 Polypyrimidine tract-b 99.9 7.7E-27 1.7E-31 198.1 10.9 174 113-289 111-290 (544)
23 KOG0109 RNA-binding protein LA 99.9 8.4E-27 1.8E-31 192.5 10.8 151 116-292 3-153 (346)
24 KOG0148 Apoptosis-promoting RN 99.9 1.1E-25 2.3E-30 184.2 11.8 142 111-290 2-143 (321)
25 TIGR01622 SF-CC1 splicing fact 99.9 2E-24 4.4E-29 201.8 20.9 168 115-289 186-448 (457)
26 KOG4205 RNA-binding protein mu 99.9 1.3E-24 2.7E-29 187.7 12.6 177 114-295 5-182 (311)
27 KOG0123 Polyadenylate-binding 99.9 9.6E-24 2.1E-28 188.5 17.3 155 116-292 2-156 (369)
28 KOG0144 RNA-binding protein CU 99.9 2.7E-24 5.9E-29 186.3 12.8 177 113-291 122-506 (510)
29 KOG0147 Transcriptional coacti 99.9 6.6E-24 1.4E-28 189.4 8.2 179 111-293 175-362 (549)
30 KOG0110 RNA-binding protein (R 99.9 4E-23 8.7E-28 189.2 12.4 172 116-288 516-692 (725)
31 TIGR01645 half-pint poly-U bin 99.9 1.7E-20 3.8E-25 175.4 21.1 79 114-194 203-281 (612)
32 KOG0123 Polyadenylate-binding 99.9 4E-21 8.8E-26 171.7 14.3 168 117-289 78-246 (369)
33 KOG0147 Transcriptional coacti 99.8 9.4E-20 2E-24 163.0 12.7 165 116-288 279-527 (549)
34 PLN03134 glycine-rich RNA-bind 99.8 1.7E-19 3.7E-24 141.0 12.4 86 205-291 31-116 (144)
35 KOG4206 Spliceosomal protein s 99.8 1E-18 2.2E-23 140.8 16.7 162 115-287 9-220 (221)
36 KOG0105 Alternative splicing f 99.8 1.9E-18 4.2E-23 134.2 15.1 152 113-277 4-176 (241)
37 KOG4211 Splicing factor hnRNP- 99.8 4.3E-18 9.3E-23 150.6 16.7 167 113-288 8-181 (510)
38 KOG4212 RNA-binding protein hn 99.8 7.2E-18 1.6E-22 146.8 17.6 174 111-287 40-292 (608)
39 KOG1548 Transcription elongati 99.8 1.1E-16 2.3E-21 135.9 19.0 171 112-290 131-353 (382)
40 PLN03134 glycine-rich RNA-bind 99.7 2.4E-17 5.3E-22 128.8 12.7 85 112-198 31-115 (144)
41 KOG1457 RNA binding protein (c 99.7 7.2E-17 1.6E-21 129.1 14.5 161 111-276 30-273 (284)
42 KOG0110 RNA-binding protein (R 99.7 3.6E-17 7.9E-22 150.4 14.0 166 113-287 383-596 (725)
43 KOG0122 Translation initiation 99.7 1.7E-17 3.7E-22 134.5 9.8 84 205-289 186-269 (270)
44 TIGR01659 sex-lethal sex-letha 99.7 2.7E-17 5.8E-22 146.5 11.0 86 204-290 103-188 (346)
45 KOG0106 Alternative splicing f 99.7 1.3E-17 2.8E-22 135.8 7.2 152 116-286 2-168 (216)
46 KOG1190 Polypyrimidine tract-b 99.7 4.3E-16 9.3E-21 134.8 15.1 162 115-288 297-490 (492)
47 PF00076 RRM_1: RNA recognitio 99.7 1.7E-16 3.7E-21 108.8 9.5 70 211-282 1-70 (70)
48 KOG0122 Translation initiation 99.7 2.9E-16 6.3E-21 127.5 11.3 86 110-197 184-269 (270)
49 TIGR01648 hnRNP-R-Q heterogene 99.7 4.2E-16 9.1E-21 145.9 13.2 119 166-288 18-137 (578)
50 KOG0120 Splicing factor U2AF, 99.7 5.5E-16 1.2E-20 140.7 12.9 175 110-288 284-491 (500)
51 KOG1456 Heterogeneous nuclear 99.7 5.6E-15 1.2E-19 126.6 16.6 173 111-295 27-205 (494)
52 KOG4212 RNA-binding protein hn 99.7 4.7E-15 1E-19 129.4 16.1 73 208-286 536-608 (608)
53 KOG0125 Ataxin 2-binding prote 99.7 4.7E-16 1E-20 131.1 9.6 84 204-290 92-175 (376)
54 KOG0124 Polypyrimidine tract-b 99.7 3.7E-15 8.1E-20 127.3 15.1 169 114-285 209-531 (544)
55 KOG0149 Predicted RNA-binding 99.7 3.9E-16 8.4E-21 126.2 8.4 80 113-193 10-89 (247)
56 KOG1456 Heterogeneous nuclear 99.6 3.6E-14 7.8E-19 121.7 20.4 174 110-290 282-492 (494)
57 KOG0149 Predicted RNA-binding 99.6 3E-16 6.4E-21 126.9 7.3 82 205-288 9-90 (247)
58 COG0724 RNA-binding proteins ( 99.6 3.1E-15 6.7E-20 130.0 14.0 153 115-270 115-286 (306)
59 PF14259 RRM_6: RNA recognitio 99.6 1.9E-15 4E-20 103.8 9.2 70 211-282 1-70 (70)
60 KOG1190 Polypyrimidine tract-b 99.6 1E-14 2.2E-19 126.5 15.3 164 114-287 149-371 (492)
61 KOG0121 Nuclear cap-binding pr 99.6 9.3E-16 2E-20 112.3 7.4 83 111-195 32-114 (153)
62 KOG0107 Alternative splicing f 99.6 1.4E-15 3E-20 117.6 8.6 79 207-291 9-87 (195)
63 KOG0111 Cyclophilin-type pepti 99.6 2.5E-16 5.4E-21 125.7 4.7 89 207-296 9-97 (298)
64 KOG0129 Predicted RNA-binding 99.6 1.7E-14 3.6E-19 128.9 16.7 157 110-269 254-431 (520)
65 KOG0113 U1 small nuclear ribon 99.6 4.4E-15 9.5E-20 123.8 11.2 90 205-295 98-187 (335)
66 KOG4207 Predicted splicing fac 99.6 1.6E-15 3.4E-20 120.1 7.6 82 205-287 10-91 (256)
67 PLN03120 nucleic acid binding 99.6 4.9E-15 1.1E-19 123.9 10.7 76 208-288 4-79 (260)
68 KOG0117 Heterogeneous nuclear 99.6 8.3E-15 1.8E-19 128.3 11.9 124 161-290 38-165 (506)
69 KOG0121 Nuclear cap-binding pr 99.6 2.9E-15 6.3E-20 109.7 7.2 81 206-287 34-114 (153)
70 PF00076 RRM_1: RNA recognitio 99.6 3.9E-15 8.4E-20 102.0 7.5 66 118-184 1-66 (70)
71 KOG0125 Ataxin 2-binding prote 99.6 6.9E-15 1.5E-19 124.2 9.9 84 110-197 91-174 (376)
72 KOG0126 Predicted RNA-binding 99.6 3.2E-16 7E-21 121.6 0.7 84 205-289 32-115 (219)
73 PLN03213 repressor of silencin 99.6 1.9E-14 4.1E-19 127.5 9.8 79 206-289 8-88 (759)
74 smart00362 RRM_2 RNA recogniti 99.5 9.5E-14 2.1E-18 94.9 9.8 72 210-284 1-72 (72)
75 PLN03120 nucleic acid binding 99.5 1.7E-13 3.8E-18 114.7 12.6 76 115-196 4-79 (260)
76 KOG0114 Predicted RNA-binding 99.5 7.1E-14 1.5E-18 98.7 8.6 82 206-291 16-97 (124)
77 PF14259 RRM_6: RNA recognitio 99.5 4E-14 8.6E-19 97.1 7.1 66 118-184 1-66 (70)
78 KOG0108 mRNA cleavage and poly 99.5 2.7E-14 5.8E-19 129.1 8.0 85 209-294 19-103 (435)
79 smart00360 RRM RNA recognition 99.5 9.5E-14 2.1E-18 94.6 8.9 71 213-284 1-71 (71)
80 KOG0107 Alternative splicing f 99.5 5.3E-14 1.2E-18 108.8 8.0 76 113-195 8-83 (195)
81 KOG0113 U1 small nuclear ribon 99.5 8.6E-14 1.9E-18 116.2 9.4 87 108-194 94-180 (335)
82 PLN03121 nucleic acid binding 99.5 1.8E-13 4E-18 112.7 10.5 76 207-287 4-79 (243)
83 KOG0126 Predicted RNA-binding 99.5 2.9E-15 6.3E-20 116.3 -0.5 83 111-195 31-113 (219)
84 KOG1365 RNA-binding protein Fu 99.5 2.3E-13 5E-18 117.2 10.7 169 113-287 159-360 (508)
85 KOG0226 RNA-binding proteins [ 99.5 3.2E-14 7E-19 116.2 4.6 170 117-290 98-271 (290)
86 KOG0108 mRNA cleavage and poly 99.5 8.3E-14 1.8E-18 125.9 7.4 80 116-197 19-98 (435)
87 KOG4207 Predicted splicing fac 99.5 9.6E-14 2.1E-18 110.1 6.7 84 111-196 9-92 (256)
88 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.4E-18 102.4 6.4 82 206-288 70-151 (170)
89 COG0724 RNA-binding proteins ( 99.5 6.5E-13 1.4E-17 115.3 12.5 80 208-288 115-194 (306)
90 cd00590 RRM RRM (RNA recogniti 99.5 9.5E-13 2E-17 90.4 10.4 74 210-285 1-74 (74)
91 KOG0114 Predicted RNA-binding 99.4 1.2E-12 2.6E-17 92.5 9.8 81 109-194 12-92 (124)
92 PLN03121 nucleic acid binding 99.4 7.9E-13 1.7E-17 109.0 10.1 76 114-195 4-79 (243)
93 smart00361 RRM_1 RNA recogniti 99.4 6.5E-13 1.4E-17 90.9 8.2 62 222-284 2-70 (70)
94 KOG0131 Splicing factor 3b, su 99.4 2.4E-13 5.3E-18 105.8 6.7 80 207-287 8-87 (203)
95 PF13893 RRM_5: RNA recognitio 99.4 1.1E-12 2.3E-17 85.7 8.2 56 225-286 1-56 (56)
96 PLN03213 repressor of silencin 99.4 7.1E-13 1.5E-17 117.7 8.9 77 113-195 8-86 (759)
97 KOG0130 RNA-binding protein RB 99.4 7E-13 1.5E-17 98.2 7.0 83 113-197 70-152 (170)
98 KOG0105 Alternative splicing f 99.4 6.9E-13 1.5E-17 103.5 7.1 81 206-290 4-84 (241)
99 smart00362 RRM_2 RNA recogniti 99.4 1.6E-12 3.5E-17 88.7 7.8 66 117-184 1-66 (72)
100 smart00360 RRM RNA recognition 99.4 3E-12 6.5E-17 87.0 8.6 69 120-190 1-69 (71)
101 KOG0111 Cyclophilin-type pepti 99.4 5.1E-13 1.1E-17 106.9 4.4 84 113-198 8-91 (298)
102 KOG0415 Predicted peptidyl pro 99.3 1.8E-12 3.9E-17 110.7 7.0 90 205-295 236-325 (479)
103 KOG0120 Splicing factor U2AF, 99.3 4E-12 8.8E-17 115.7 9.3 173 111-291 171-371 (500)
104 KOG4210 Nuclear localization s 99.3 1.5E-12 3.3E-17 112.6 6.0 178 113-292 86-267 (285)
105 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.4E-16 83.6 9.6 73 117-192 1-73 (74)
106 KOG4211 Splicing factor hnRNP- 99.3 6.3E-11 1.4E-15 105.6 14.2 167 113-287 101-356 (510)
107 KOG0109 RNA-binding protein LA 99.3 7.9E-12 1.7E-16 104.3 6.1 72 209-289 3-74 (346)
108 KOG4454 RNA binding protein (R 99.3 1.6E-12 3.6E-17 104.1 1.8 146 112-281 6-155 (267)
109 KOG0128 RNA-binding protein SA 99.2 5.2E-13 1.1E-17 125.6 -2.1 150 114-289 666-815 (881)
110 KOG4206 Spliceosomal protein s 99.2 5.3E-11 1.1E-15 96.4 8.3 84 207-294 8-95 (221)
111 KOG0132 RNA polymerase II C-te 99.2 4.6E-11 1E-15 111.5 7.8 108 115-230 421-528 (894)
112 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.8E-15 79.5 7.3 56 129-184 2-64 (70)
113 KOG4205 RNA-binding protein mu 99.1 4.1E-11 8.9E-16 104.1 5.3 86 207-294 5-90 (311)
114 KOG0153 Predicted RNA-binding 99.1 1.8E-10 3.8E-15 98.6 8.7 80 203-289 223-303 (377)
115 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.4E-15 109.0 8.0 81 206-293 419-499 (894)
116 PF13893 RRM_5: RNA recognitio 99.1 1.8E-10 3.9E-15 75.1 6.7 56 132-194 1-56 (56)
117 KOG4208 Nucleolar RNA-binding 99.1 2.7E-10 5.9E-15 90.9 8.8 84 205-289 46-130 (214)
118 KOG0146 RNA-binding protein ET 99.1 8.4E-11 1.8E-15 97.0 6.0 83 110-192 280-362 (371)
119 KOG1365 RNA-binding protein Fu 99.1 4.5E-10 9.8E-15 97.1 10.1 171 111-286 56-240 (508)
120 KOG4208 Nucleolar RNA-binding 99.1 4.6E-10 1E-14 89.6 7.6 80 112-191 46-126 (214)
121 KOG0415 Predicted peptidyl pro 99.1 2.5E-10 5.4E-15 97.8 6.2 82 112-195 236-317 (479)
122 KOG0112 Large RNA-binding prot 99.1 1.5E-10 3.3E-15 109.8 5.2 165 110-291 367-533 (975)
123 KOG4307 RNA binding protein RB 99.0 1.4E-08 3E-13 94.1 13.5 76 209-285 868-943 (944)
124 KOG4660 Protein Mei2, essentia 98.9 1.5E-09 3.3E-14 98.4 6.6 163 111-289 71-250 (549)
125 KOG0533 RRM motif-containing p 98.9 5.4E-09 1.2E-13 87.5 8.9 85 206-292 81-165 (243)
126 KOG4661 Hsp27-ERE-TATA-binding 98.9 6.2E-09 1.3E-13 94.4 8.2 81 208-289 405-485 (940)
127 KOG4307 RNA binding protein RB 98.9 1.2E-08 2.6E-13 94.6 9.6 181 103-289 299-514 (944)
128 KOG0153 Predicted RNA-binding 98.8 1.3E-08 2.9E-13 87.2 8.6 79 111-196 224-302 (377)
129 PF04059 RRM_2: RNA recognitio 98.8 4E-08 8.6E-13 70.6 9.5 80 116-195 2-85 (97)
130 PF04059 RRM_2: RNA recognitio 98.8 4.1E-08 8.8E-13 70.6 9.4 81 209-289 2-87 (97)
131 KOG1457 RNA binding protein (c 98.8 3.8E-08 8.2E-13 79.6 10.1 87 206-293 32-122 (284)
132 KOG4660 Protein Mei2, essentia 98.8 6.3E-09 1.4E-13 94.4 5.8 72 205-282 72-143 (549)
133 KOG0533 RRM motif-containing p 98.8 2.4E-08 5.3E-13 83.6 8.6 80 113-195 81-160 (243)
134 KOG0226 RNA-binding proteins [ 98.8 7.8E-09 1.7E-13 85.1 5.4 79 112-192 187-265 (290)
135 KOG4209 Splicing factor RNPS1, 98.8 1E-08 2.2E-13 86.0 5.7 84 204-289 97-180 (231)
136 KOG4661 Hsp27-ERE-TATA-binding 98.8 5.3E-08 1.2E-12 88.5 10.1 86 112-199 402-487 (940)
137 KOG1548 Transcription elongati 98.7 3.8E-08 8.2E-13 84.5 8.1 80 206-287 132-219 (382)
138 KOG0106 Alternative splicing f 98.6 3.7E-08 8.1E-13 80.7 4.6 72 209-289 2-73 (216)
139 KOG2193 IGF-II mRNA-binding pr 98.6 5E-09 1.1E-13 91.8 -1.7 151 116-286 2-154 (584)
140 KOG4454 RNA binding protein (R 98.6 2.4E-08 5.1E-13 80.5 1.9 78 207-287 8-85 (267)
141 KOG0151 Predicted splicing reg 98.6 1.8E-07 3.9E-12 87.2 7.8 84 112-197 171-257 (877)
142 KOG0116 RasGAP SH3 binding pro 98.6 2E-07 4.4E-12 84.3 8.0 80 209-290 289-368 (419)
143 KOG0116 RasGAP SH3 binding pro 98.5 4E-07 8.6E-12 82.4 8.9 83 110-195 283-365 (419)
144 KOG4209 Splicing factor RNPS1, 98.5 1.6E-07 3.4E-12 78.9 5.8 81 111-194 97-177 (231)
145 KOG1995 Conserved Zn-finger pr 98.5 1.7E-07 3.7E-12 81.2 4.9 88 206-294 64-159 (351)
146 KOG0151 Predicted splicing reg 98.5 4.3E-07 9.3E-12 84.7 7.7 82 205-287 171-255 (877)
147 KOG4676 Splicing factor, argin 98.3 2.1E-07 4.6E-12 81.1 1.3 166 116-289 8-226 (479)
148 PF11608 Limkain-b1: Limkain b 98.2 7E-06 1.5E-10 56.4 7.5 70 209-289 3-77 (90)
149 PF08777 RRM_3: RNA binding mo 98.2 2.7E-06 5.8E-11 62.6 5.6 72 209-287 2-78 (105)
150 KOG0128 RNA-binding protein SA 98.1 1.8E-07 4E-12 88.9 -3.1 159 114-276 570-734 (881)
151 KOG1855 Predicted RNA-binding 98.1 5.3E-06 1.1E-10 73.4 6.1 68 206-274 229-309 (484)
152 COG5175 MOT2 Transcriptional r 98.1 6.9E-06 1.5E-10 70.5 6.5 85 209-294 115-208 (480)
153 KOG0115 RNA-binding protein p5 98.1 1E-05 2.2E-10 67.1 7.1 90 168-273 5-94 (275)
154 KOG1996 mRNA splicing factor [ 98.0 1.7E-05 3.7E-10 66.9 7.0 65 222-287 300-365 (378)
155 KOG4849 mRNA cleavage factor I 98.0 5.5E-06 1.2E-10 71.4 4.0 71 116-186 81-153 (498)
156 KOG1995 Conserved Zn-finger pr 98.0 1.3E-05 2.8E-10 69.7 6.2 84 112-197 63-154 (351)
157 KOG2314 Translation initiation 97.9 2.5E-05 5.4E-10 71.5 6.7 77 207-285 57-140 (698)
158 PF11608 Limkain-b1: Limkain b 97.9 0.00012 2.6E-09 50.4 7.7 68 116-195 3-75 (90)
159 PF08777 RRM_3: RNA binding mo 97.9 4.8E-05 1E-09 56.0 6.3 59 116-180 2-60 (105)
160 KOG3152 TBP-binding protein, a 97.8 2.1E-05 4.5E-10 65.3 3.9 73 114-186 73-157 (278)
161 KOG3152 TBP-binding protein, a 97.8 1.4E-05 2.9E-10 66.3 2.5 73 207-280 73-157 (278)
162 KOG1855 Predicted RNA-binding 97.7 2.9E-05 6.4E-10 68.8 3.9 80 113-192 229-321 (484)
163 KOG2202 U2 snRNP splicing fact 97.7 1.7E-05 3.6E-10 66.0 2.2 64 223-287 83-146 (260)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.7E-09 46.6 5.1 52 116-174 2-53 (53)
165 KOG2416 Acinus (induces apopto 97.7 3.8E-05 8.2E-10 70.7 3.6 78 205-288 441-521 (718)
166 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.8E-09 46.5 5.0 52 209-268 2-53 (53)
167 KOG4849 mRNA cleavage factor I 97.6 5.5E-05 1.2E-09 65.4 3.8 78 207-285 79-159 (498)
168 KOG4210 Nuclear localization s 97.6 5.4E-05 1.2E-09 65.9 3.8 82 113-197 182-264 (285)
169 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00026 5.6E-09 51.3 6.7 79 207-288 5-91 (100)
170 KOG2314 Translation initiation 97.5 0.00013 2.8E-09 67.0 4.1 77 113-191 56-138 (698)
171 COG5175 MOT2 Transcriptional r 97.3 0.00057 1.2E-08 59.0 6.5 111 115-227 114-239 (480)
172 KOG0129 Predicted RNA-binding 97.3 0.001 2.2E-08 60.7 7.6 67 110-176 365-432 (520)
173 PF08952 DUF1866: Domain of un 97.2 0.0013 2.8E-08 50.7 6.9 57 224-290 52-108 (146)
174 KOG2591 c-Mpl binding protein, 97.2 0.00096 2.1E-08 61.3 6.8 100 166-285 146-248 (684)
175 PF10309 DUF2414: Protein of u 97.1 0.0035 7.5E-08 41.0 6.8 55 208-271 5-62 (62)
176 KOG2253 U1 snRNP complex, subu 97.0 9.6E-05 2.1E-09 69.1 -1.9 108 113-229 38-156 (668)
177 KOG2193 IGF-II mRNA-binding pr 97.0 0.00069 1.5E-08 60.3 3.4 81 209-296 2-83 (584)
178 KOG0115 RNA-binding protein p5 96.9 0.0036 7.9E-08 52.3 7.2 62 116-178 32-93 (275)
179 PF10309 DUF2414: Protein of u 96.9 0.0077 1.7E-07 39.4 6.9 54 116-177 6-62 (62)
180 KOG2416 Acinus (induces apopto 96.9 0.0012 2.6E-08 61.3 4.2 79 111-195 440-520 (718)
181 KOG0112 Large RNA-binding prot 96.7 0.0028 6.1E-08 61.6 5.9 82 111-198 451-532 (975)
182 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0045 9.8E-08 44.9 5.2 78 114-194 5-89 (100)
183 PF07576 BRAP2: BRCA1-associat 96.6 0.026 5.7E-07 41.7 8.9 68 208-277 13-80 (110)
184 KOG4574 RNA-binding protein (c 96.4 0.002 4.2E-08 62.2 2.7 70 212-288 302-373 (1007)
185 PF10567 Nab6_mRNP_bdg: RNA-re 96.4 0.17 3.6E-06 43.5 13.4 160 111-272 11-212 (309)
186 KOG1996 mRNA splicing factor [ 96.3 0.014 3.1E-07 49.7 6.6 63 129-193 300-363 (378)
187 KOG2202 U2 snRNP splicing fact 96.2 0.0032 6.9E-08 52.7 2.5 63 130-195 83-146 (260)
188 KOG2068 MOT2 transcription fac 96.2 0.0018 4E-08 56.2 0.9 85 209-294 78-168 (327)
189 PF08675 RNA_bind: RNA binding 96.0 0.043 9.3E-07 38.0 6.8 55 208-272 9-63 (87)
190 PF08675 RNA_bind: RNA binding 96.0 0.04 8.7E-07 38.1 6.6 55 116-179 10-64 (87)
191 PF15023 DUF4523: Protein of u 96.0 0.061 1.3E-06 41.1 8.1 73 112-194 83-159 (166)
192 PF04847 Calcipressin: Calcipr 95.9 0.023 5E-07 46.2 6.0 63 221-290 8-72 (184)
193 PF11767 SET_assoc: Histone ly 95.9 0.048 1E-06 36.2 6.4 55 219-283 11-65 (66)
194 PF07576 BRAP2: BRCA1-associat 95.8 0.12 2.6E-06 38.2 9.0 68 114-183 12-80 (110)
195 KOG4676 Splicing factor, argin 95.7 0.018 3.9E-07 51.1 5.0 75 209-285 8-85 (479)
196 KOG2135 Proteins containing th 95.7 0.0073 1.6E-07 54.7 2.6 76 210-293 374-450 (526)
197 KOG4574 RNA-binding protein (c 95.5 0.011 2.3E-07 57.3 3.2 75 118-198 301-375 (1007)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.011 2.5E-07 47.7 2.6 84 113-196 5-97 (176)
199 KOG2318 Uncharacterized conser 95.4 0.11 2.4E-06 48.6 9.1 128 112-286 171-305 (650)
200 PF15023 DUF4523: Protein of u 95.4 0.049 1.1E-06 41.6 5.6 75 204-287 82-160 (166)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.018 3.9E-07 46.6 3.6 80 207-287 6-96 (176)
202 KOG0804 Cytoplasmic Zn-finger 95.3 0.088 1.9E-06 47.7 7.9 69 207-277 73-141 (493)
203 KOG2591 c-Mpl binding protein, 95.2 0.056 1.2E-06 50.2 6.6 61 111-178 171-233 (684)
204 PF08952 DUF1866: Domain of un 95.2 0.059 1.3E-06 41.6 5.7 57 131-198 52-108 (146)
205 PF07292 NID: Nmi/IFP 35 domai 94.5 0.052 1.1E-06 38.3 3.5 70 160-230 1-74 (88)
206 KOG0804 Cytoplasmic Zn-finger 94.5 0.22 4.7E-06 45.3 8.2 68 115-184 74-142 (493)
207 PF03880 DbpA: DbpA RNA bindin 94.3 0.2 4.4E-06 34.2 6.1 59 218-286 11-74 (74)
208 KOG4285 Mitotic phosphoprotein 94.2 0.23 4.9E-06 42.8 7.3 70 207-285 196-266 (350)
209 KOG2068 MOT2 transcription fac 93.8 0.031 6.7E-07 48.8 1.5 80 116-197 78-163 (327)
210 KOG2135 Proteins containing th 92.2 0.092 2E-06 47.9 2.2 79 111-198 368-447 (526)
211 KOG2891 Surface glycoprotein [ 92.2 0.26 5.7E-06 41.9 4.7 130 159-289 77-268 (445)
212 PF11767 SET_assoc: Histone ly 91.7 0.79 1.7E-05 30.5 5.7 48 126-182 11-58 (66)
213 KOG2253 U1 snRNP complex, subu 91.4 0.22 4.9E-06 47.3 3.8 74 203-286 35-108 (668)
214 PF04847 Calcipressin: Calcipr 91.1 0.43 9.3E-06 38.8 4.8 62 128-197 8-71 (184)
215 KOG4285 Mitotic phosphoprotein 89.8 0.85 1.8E-05 39.4 5.6 61 116-184 198-258 (350)
216 PF10567 Nab6_mRNP_bdg: RNA-re 86.8 2.2 4.7E-05 36.9 6.1 82 206-288 13-107 (309)
217 TIGR02542 B_forsyth_147 Bacter 86.2 1.2 2.7E-05 32.7 3.8 46 216-261 82-129 (145)
218 COG5638 Uncharacterized conser 81.7 13 0.00027 33.9 8.9 36 252-287 259-296 (622)
219 KOG4274 Positive cofactor 2 (P 81.3 3.7 8.1E-05 38.7 5.7 17 7-23 128-144 (742)
220 KOG4410 5-formyltetrahydrofola 81.3 8.5 0.00018 33.2 7.4 48 208-262 330-378 (396)
221 KOG4410 5-formyltetrahydrofola 79.1 15 0.00032 31.8 8.1 55 110-169 325-379 (396)
222 KOG4019 Calcineurin-mediated s 79.0 1.4 3E-05 35.3 1.9 79 209-294 11-95 (193)
223 KOG4483 Uncharacterized conser 76.8 7.2 0.00016 35.2 5.9 56 114-176 390-446 (528)
224 KOG3424 40S ribosomal protein 76.6 6.3 0.00014 29.2 4.5 47 219-266 34-84 (132)
225 PF07530 PRE_C2HC: Associated 75.6 6.6 0.00014 26.2 4.2 65 223-290 2-66 (68)
226 PF03880 DbpA: DbpA RNA bindin 74.2 18 0.00039 24.4 6.3 57 125-192 11-72 (74)
227 KOG4483 Uncharacterized conser 73.1 10 0.00022 34.4 5.8 56 207-270 390-446 (528)
228 PF14111 DUF4283: Domain of un 70.3 16 0.00034 28.3 6.1 117 117-242 17-138 (153)
229 PRK01178 rps24e 30S ribosomal 69.3 15 0.00031 26.6 5.0 47 219-266 30-80 (99)
230 PRK14548 50S ribosomal protein 68.5 21 0.00046 24.9 5.6 57 212-271 24-81 (84)
231 KOG2295 C2H2 Zn-finger protein 65.4 1.1 2.4E-05 41.9 -1.7 71 112-182 228-298 (648)
232 KOG2295 C2H2 Zn-finger protein 64.3 1 2.2E-05 42.2 -2.1 74 206-280 229-302 (648)
233 TIGR03636 L23_arch archaeal ri 62.3 35 0.00077 23.4 5.6 58 211-271 16-74 (77)
234 PTZ00071 40S ribosomal protein 60.0 24 0.00051 27.0 4.8 47 219-266 35-86 (132)
235 COG0445 GidA Flavin-dependent 59.9 46 0.00099 32.0 7.6 85 159-244 238-336 (621)
236 PF03468 XS: XS domain; Inter 58.9 12 0.00026 28.0 3.1 46 127-175 29-75 (116)
237 PRK11901 hypothetical protein; 58.3 27 0.00058 31.0 5.6 64 113-181 243-308 (327)
238 PRK14548 50S ribosomal protein 57.6 42 0.0009 23.5 5.4 57 118-177 23-81 (84)
239 PF15513 DUF4651: Domain of un 54.5 25 0.00054 22.9 3.6 20 130-149 9-28 (62)
240 KOG2603 Oligosaccharyltransfer 53.0 25 0.00055 30.9 4.5 115 185-306 39-154 (331)
241 PF07292 NID: Nmi/IFP 35 domai 52.0 7.4 0.00016 27.5 0.9 25 113-137 50-74 (88)
242 KOG1131 RNA polymerase II tran 51.9 60 0.0013 31.0 6.9 120 159-294 564-689 (755)
243 smart00596 PRE_C2HC PRE_C2HC d 51.5 29 0.00064 23.2 3.6 62 223-288 2-64 (69)
244 KOG1295 Nonsense-mediated deca 50.3 21 0.00044 32.3 3.6 70 113-182 5-77 (376)
245 COG5507 Uncharacterized conser 50.2 30 0.00066 24.7 3.7 21 251-271 66-86 (117)
246 TIGR03636 L23_arch archaeal ri 49.6 72 0.0016 21.9 5.5 57 117-176 15-73 (77)
247 PF03468 XS: XS domain; Inter 49.2 29 0.00062 25.9 3.8 38 220-261 29-66 (116)
248 PF14893 PNMA: PNMA 46.0 23 0.00049 31.8 3.3 84 206-294 16-102 (331)
249 PF02714 DUF221: Domain of unk 44.6 57 0.0012 28.9 5.8 56 160-230 1-56 (325)
250 COG2004 RPS24A Ribosomal prote 44.5 78 0.0017 23.2 5.2 48 218-266 30-81 (107)
251 KOG1295 Nonsense-mediated deca 44.2 31 0.00067 31.2 3.8 68 208-276 7-77 (376)
252 KOG4008 rRNA processing protei 44.1 22 0.00048 29.9 2.7 35 111-145 36-70 (261)
253 COG5193 LHP1 La protein, small 43.2 12 0.00025 34.0 1.0 62 114-175 173-244 (438)
254 PF11823 DUF3343: Protein of u 43.2 34 0.00073 23.0 3.1 22 253-274 3-24 (73)
255 KOG3702 Nuclear polyadenylated 42.5 41 0.00089 32.7 4.5 65 210-276 513-577 (681)
256 PF07530 PRE_C2HC: Associated 42.1 54 0.0012 21.8 3.9 60 130-194 2-62 (68)
257 PRK11901 hypothetical protein; 42.0 48 0.001 29.4 4.6 60 208-273 245-306 (327)
258 KOG2318 Uncharacterized conser 41.0 64 0.0014 30.9 5.5 37 159-195 270-306 (650)
259 COG3254 Uncharacterized conser 40.7 1.1E+02 0.0024 22.3 5.5 42 223-268 27-68 (105)
260 PRK10905 cell division protein 40.3 53 0.0012 29.1 4.5 61 116-181 248-310 (328)
261 KOG4019 Calcineurin-mediated s 40.0 27 0.00059 28.1 2.5 76 114-196 9-89 (193)
262 PF08734 GYD: GYD domain; Int 38.8 1.4E+02 0.003 21.1 6.2 45 129-177 22-67 (91)
263 KOG2891 Surface glycoprotein [ 38.5 46 0.00099 28.7 3.8 70 113-182 147-247 (445)
264 PF01282 Ribosomal_S24e: Ribos 36.8 1.3E+02 0.0028 20.9 5.3 49 218-267 11-63 (84)
265 PF14893 PNMA: PNMA 36.2 41 0.00088 30.2 3.3 79 111-196 14-96 (331)
266 PTZ00191 60S ribosomal protein 36.1 1.3E+02 0.0028 23.5 5.6 56 211-269 84-140 (145)
267 COG3254 Uncharacterized conser 35.9 1.5E+02 0.0031 21.7 5.4 43 130-175 27-69 (105)
268 PF12687 DUF3801: Protein of u 35.1 91 0.002 25.8 5.1 56 126-183 38-96 (204)
269 KOG4213 RNA-binding protein La 34.8 58 0.0013 26.3 3.6 50 127-177 118-170 (205)
270 PF04026 SpoVG: SpoVG; InterP 33.1 77 0.0017 22.1 3.6 47 236-289 3-51 (84)
271 PF03439 Spt5-NGN: Early trans 32.4 73 0.0016 22.1 3.5 27 249-275 42-68 (84)
272 PF08734 GYD: GYD domain; Int 30.7 1.9E+02 0.0042 20.3 6.3 47 222-272 22-68 (91)
273 KOG0862 Synaptobrevin/VAMP-lik 29.7 34 0.00073 28.4 1.6 31 223-261 89-119 (216)
274 PRK05192 tRNA uridine 5-carbox 29.6 1.3E+02 0.0027 29.7 5.7 84 160-244 239-336 (618)
275 PRK10629 EnvZ/OmpR regulon mod 29.3 2.6E+02 0.0055 21.2 8.4 59 220-287 50-109 (127)
276 COG5470 Uncharacterized conser 29.1 61 0.0013 23.2 2.6 20 249-268 51-70 (96)
277 KOG1985 Vesicle coat complex C 29.0 1.7E+02 0.0037 29.5 6.4 19 205-223 292-310 (887)
278 cd00874 RNA_Cyclase_Class_II R 28.8 4.3E+02 0.0093 23.7 10.8 112 122-259 119-238 (326)
279 PRK13259 regulatory protein Sp 28.5 93 0.002 22.3 3.5 48 236-290 3-52 (94)
280 PF00564 PB1: PB1 domain; Int 28.3 1.7E+02 0.0038 19.7 5.0 63 214-284 16-80 (84)
281 PF08002 DUF1697: Protein of u 28.2 1.2E+02 0.0025 23.4 4.3 117 116-241 4-131 (137)
282 KOG4274 Positive cofactor 2 (P 27.9 2.4E+02 0.0052 27.3 6.9 11 118-128 345-355 (742)
283 PF04026 SpoVG: SpoVG; InterP 27.8 1E+02 0.0022 21.5 3.5 26 141-166 2-27 (84)
284 KOG3373 Glycine cleavage syste 27.5 1.2E+02 0.0026 24.0 4.2 49 225-274 71-119 (172)
285 PF13046 DUF3906: Protein of u 27.2 77 0.0017 20.8 2.6 34 127-162 30-63 (64)
286 COG0030 KsgA Dimethyladenosine 27.1 93 0.002 26.9 3.9 34 115-148 95-128 (259)
287 COG5193 LHP1 La protein, small 27.1 32 0.00069 31.4 1.1 61 208-269 174-244 (438)
288 PF11411 DNA_ligase_IV: DNA li 26.8 50 0.0011 19.0 1.5 16 125-140 19-34 (36)
289 PF08544 GHMP_kinases_C: GHMP 26.7 2E+02 0.0044 19.2 5.9 44 130-178 37-80 (85)
290 PF13689 DUF4154: Domain of un 26.5 1.3E+02 0.0028 23.2 4.4 60 222-287 2-61 (145)
291 cd00875 RNA_Cyclase_Class_I RN 26.2 4.9E+02 0.011 23.5 9.8 114 121-258 118-243 (341)
292 COG5353 Uncharacterized protei 25.8 3.3E+02 0.0071 21.3 6.5 55 209-263 88-154 (161)
293 PHA01632 hypothetical protein 25.7 80 0.0017 20.0 2.4 21 118-138 19-39 (64)
294 PF09869 DUF2096: Uncharacteri 25.5 2.2E+02 0.0048 22.7 5.4 52 209-272 113-164 (169)
295 PRK10905 cell division protein 25.4 1.4E+02 0.003 26.5 4.7 58 209-272 248-307 (328)
296 PF02426 MIase: Muconolactone 25.3 2.5E+02 0.0055 19.9 6.8 55 122-180 10-74 (91)
297 PF00403 HMA: Heavy-metal-asso 25.3 1.8E+02 0.0039 18.2 5.8 54 117-176 1-58 (62)
298 PRK13259 regulatory protein Sp 24.7 1.1E+02 0.0025 21.8 3.4 26 141-166 2-27 (94)
299 KOG1984 Vesicle coat complex C 24.5 2.7E+02 0.0059 28.5 6.9 22 4-25 19-40 (1007)
300 KOG4369 RTK signaling protein 23.8 41 0.00089 35.2 1.3 13 130-142 1966-1978(2131)
301 PF11004 Kdo_hydroxy: 3-deoxy- 23.2 1.8E+02 0.0039 25.3 4.8 46 206-252 19-64 (281)
302 PRK11230 glycolate oxidase sub 23.0 3.2E+02 0.007 26.1 7.1 50 222-272 203-255 (499)
303 PRK07400 30S ribosomal protein 22.9 1.1E+02 0.0024 27.3 3.7 36 126-166 12-53 (318)
304 PF13820 Nucleic_acid_bd: Puta 22.3 2.3E+02 0.0051 22.2 5.0 59 210-272 6-66 (149)
305 PHA00742 hypothetical protein 21.8 53 0.0012 26.1 1.3 62 211-276 92-157 (211)
306 PRK11230 glycolate oxidase sub 21.7 2.9E+02 0.0064 26.4 6.6 50 129-179 203-256 (499)
307 COG3403 Uncharacterized conser 21.7 1.2E+02 0.0025 25.5 3.3 47 209-264 55-101 (257)
308 PLN02805 D-lactate dehydrogena 21.6 2E+02 0.0044 27.9 5.5 51 221-272 279-332 (555)
309 PF05189 RTC_insert: RNA 3'-te 21.5 1.8E+02 0.0039 20.9 4.1 47 117-163 12-63 (103)
310 PRK08559 nusG transcription an 21.5 2.6E+02 0.0057 21.8 5.3 33 142-179 36-68 (153)
311 PF12829 Mhr1: Transcriptional 21.5 1.2E+02 0.0026 21.6 2.9 53 215-273 19-73 (91)
312 KOG4008 rRNA processing protei 21.3 92 0.002 26.3 2.7 32 207-239 39-70 (261)
313 KOG4357 Uncharacterized conser 21.1 1.2E+02 0.0027 22.7 3.1 24 253-276 115-138 (164)
314 PF12687 DUF3801: Protein of u 20.7 2.2E+02 0.0047 23.6 4.8 56 219-277 38-96 (204)
315 TIGR03147 cyt_nit_nrfF cytochr 20.1 87 0.0019 23.8 2.1 24 216-239 70-93 (126)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.9e-37 Score=271.42 Aligned_cols=176 Identities=25% Similarity=0.462 Sum_probs=158.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++||++|+++|+.||+|++|+|+.|+.+++++|||||+|.+.++|++||+.|++..+ .++.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCcee
Confidence 3556788999999999999999999999999999999999999999999999999999999999999999999 56778
Q ss_pred EEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
++.|+..... ....++|||+|||+++|+++|+++|+ +||.|++++|++|+.+++++|||||+|++.++|.+||+
T Consensus 180 ~V~~a~p~~~-----~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeeccccccc-----ccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 8888764321 23456899999999999999999996 99999999999999999999999999999999999999
Q ss_pred HhcCceecC--eeEEEEecCCCCCCC
Q 021788 270 EMNGVYCSS--RPMRIDVATPKKASG 293 (307)
Q Consensus 270 ~l~g~~i~g--~~i~v~~a~~k~~~~ 293 (307)
.||+..|.+ +.|+|++++.+...+
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccccc
Confidence 999998865 789999998765433
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-34 Score=270.04 Aligned_cols=179 Identities=17% Similarity=0.344 Sum_probs=157.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+||++++++++|+++|..||+|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..+. ++.+++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999995 4555555
Q ss_pred eccCCCCC------CcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 193 WATFSGSD------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 193 ~a~~~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
+....... ........++|||+||+.++++++|+++|+ .||.|++++|.+|+.+++++|||||+|++.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 43321111 111223457999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHhcCceecCeeEEEEecCCCCCCCc
Q 021788 267 AMTEMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 267 A~~~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
|+..||++.|+|+.|+|.++.++.....
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~~~ 289 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDALL 289 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccccC
Confidence 9999999999999999999998765554
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-34 Score=234.92 Aligned_cols=172 Identities=30% Similarity=0.556 Sum_probs=156.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...-.|||+.|...++.++||+.|.+||+|.+++|++|.+|+++|||+||.|.+.++|++||..|+|..| .++.|+-+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecc
Confidence 3355799999999999999999999999999999999999999999999999999999999999999999 78899999
Q ss_pred eccCCCCCCc-----------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 193 ~a~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
|+..+..+.. .....+++||||||+..+||++|++.|+ +||.|.+|+|+++ +||+||+|++.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecch
Confidence 9987663322 2345679999999999999999999997 9999999999998 47999999999
Q ss_pred HHHHHHHHHhcCceecCeeEEEEecCCCCCCC
Q 021788 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (307)
Q Consensus 262 ~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~ 293 (307)
|+|.+||..+||.+|+|..|+|.|.+....-.
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999988765433
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.3e-33 Score=252.49 Aligned_cols=177 Identities=26% Similarity=0.494 Sum_probs=157.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..++|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|.+|++.|+|..+.+....+.+.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999988888888888
Q ss_pred ccCCCCCCc-----------------------------------------------------------------------
Q 021788 194 ATFSGSDRR----------------------------------------------------------------------- 202 (307)
Q Consensus 194 a~~~~~~~~----------------------------------------------------------------------- 202 (307)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 753321000
Q ss_pred ----------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 203 ----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
.....+.+|||+|||+++++++|+++|+ +||.|++++|++|+.++.++|||||+|++.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011123699999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHhcCceecCeeEEEEecCCCCC
Q 021788 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (307)
Q Consensus 267 A~~~l~g~~i~g~~i~v~~a~~k~~ 291 (307)
||..|||..|+||.|+|.|+.+|..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999998864
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.6e-34 Score=246.52 Aligned_cols=177 Identities=23% Similarity=0.484 Sum_probs=159.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC-CCCCCCceE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~v~ 190 (307)
..+.-+||||.||..++|.|||.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|+..+ ++|...+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3556689999999999999999999999999999999999999999999999999999999999997754 789999999
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
+.+++.....- ...++|||+.|+..+||+||+++|+ +||.|++|+|++|.. +.+||||||.|.++|-|..||+.
T Consensus 111 vk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 111 VKYADGERERI----VEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred ecccchhhhcc----ccchhhhhhhccccccHHHHHHHHH-hhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHh
Confidence 99987543322 3467899999999999999999997 999999999999965 99999999999999999999999
Q ss_pred hcCc-eecCe--eEEEEecCCCCCCCc
Q 021788 271 MNGV-YCSSR--PMRIDVATPKKASGY 294 (307)
Q Consensus 271 l~g~-~i~g~--~i~v~~a~~k~~~~~ 294 (307)
|||. .++|+ +|.|+|+.+++++.-
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchH
Confidence 9995 57664 799999999987654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2e-32 Score=247.40 Aligned_cols=169 Identities=27% Similarity=0.507 Sum_probs=154.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..++|||+|||.++++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|+|..+ .++.+++.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 567788888
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
+..... ....++|||+|||..+++++|+++|+ .||.|..++++.+..++.++|||||+|++.++|.+|+..|||
T Consensus 80 a~~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSSD-----SIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccccc-----ccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 765432 23456899999999999999999996 999999999999988899999999999999999999999999
Q ss_pred ceecC--eeEEEEecCCCC
Q 021788 274 VYCSS--RPMRIDVATPKK 290 (307)
Q Consensus 274 ~~i~g--~~i~v~~a~~k~ 290 (307)
..+.| +.|+|+|+..+.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 98876 679999988765
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=5.8e-31 Score=245.80 Aligned_cols=173 Identities=26% Similarity=0.505 Sum_probs=150.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||..+++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+||. |+|..+.+ ..|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g--~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG--RPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC--eeeEE
Confidence 3457899999999999999999999999999999999999999999999999999999999997 89998854 45555
Q ss_pred EeccCCCCC-------CcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHH
Q 021788 192 NWATFSGSD-------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (307)
Q Consensus 192 ~~a~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A 264 (307)
.+....... ........++|||+|||..+|+++|+++|+ .||.|..|.|+.+..+|.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 443321111 011122368999999999999999999996 999999999999999899999999999999999
Q ss_pred HHHHHHhcCceecCeeEEEEecCC
Q 021788 265 SRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 265 ~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.+|+..|||..|.|+.|+|.|+..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999763
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=1.2e-30 Score=242.79 Aligned_cols=170 Identities=21% Similarity=0.395 Sum_probs=138.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC-CCCCceE-
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQPFR- 190 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-~~~~~v~- 190 (307)
...++|||+|||++++|++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|++||+.|++..+. +..+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45689999999999999999999999999999999999 68999999999999999999999999987663 1111111
Q ss_pred --------------------------------------------------------------------------------
Q 021788 191 -------------------------------------------------------------------------------- 190 (307)
Q Consensus 191 -------------------------------------------------------------------------------- 190 (307)
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence
Q ss_pred -EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhC--CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 191 -LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 191 -~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~--G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
++|+..............++|||+||++++|+++|+++|+ .| |.|++|++++ +||||+|++.++|.+|
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 0000000000000112346899999999999999999996 99 9999998763 4999999999999999
Q ss_pred HHHhcCceecCeeEEEEecCCCCCC
Q 021788 268 MTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 268 ~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
+..|||..|+|+.|+|.|++|+..+
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999987544
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.7e-31 Score=228.45 Aligned_cols=174 Identities=19% Similarity=0.347 Sum_probs=147.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC-CCCCceEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 191 (307)
.-.|.||||.||.++.|++|.-||++.|+|.+++++.|+.+|.+||||||+|.+.++|.+|++.||+..|. |+.+.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999874 33344444
Q ss_pred Eecc----------------------------------------------------------------------------
Q 021788 192 NWAT---------------------------------------------------------------------------- 195 (307)
Q Consensus 192 ~~a~---------------------------------------------------------------------------- 195 (307)
+.+.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 4333
Q ss_pred ------CCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 196 ------FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 196 ------~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
+.....+..-..-+.|||+||+.++|+|.|+++|+ .||.|++|+.++| ||||.|.+.++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 00000000011225799999999999999999996 9999999998866 89999999999999999
Q ss_pred HhcCceecCeeEEEEecCCCCCCCcc
Q 021788 270 EMNGVYCSSRPMRIDVATPKKASGYQ 295 (307)
Q Consensus 270 ~l~g~~i~g~~i~v~~a~~k~~~~~~ 295 (307)
.+||++|+|..|.|.+|+|...+++.
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999999998666654
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.7e-30 Score=248.20 Aligned_cols=169 Identities=31% Similarity=0.521 Sum_probs=152.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccC
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~ 196 (307)
+|||+|||.++||++|+++|+.||+|.+|+|++|..+++++|||||+|.+.++|++|++.+++..+ .++.+++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 699999999999999999999999999999999999999999999999999999999999999988 567888888754
Q ss_pred CCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
..... .....+|||+||+.++++++|+++|+ .||.|.+|+|..+. +|+++|||||+|++.++|.+|++.|||..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 22356899999999999999999996 99999999999984 688999999999999999999999999999
Q ss_pred cCeeEEEEecCCCCCC
Q 021788 277 SSRPMRIDVATPKKAS 292 (307)
Q Consensus 277 ~g~~i~v~~a~~k~~~ 292 (307)
+|+.|.|....++..+
T Consensus 155 ~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER 170 (562)
T ss_pred cCceEEEecccccccc
Confidence 9999999887766444
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.9e-30 Score=245.73 Aligned_cols=177 Identities=26% Similarity=0.495 Sum_probs=154.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC--CCceE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT--DQPFR 190 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~--~~~v~ 190 (307)
...++|||+||++++|+++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|+|..+... +..+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 445689999999999999999999999999999999986 789999999999999999999999999998521 55666
Q ss_pred EEeccCCCCCC-------------cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEE
Q 021788 191 LNWATFSGSDR-------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257 (307)
Q Consensus 191 ~~~a~~~~~~~-------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~ 257 (307)
+.++..+.... .......++|||+||++++|+++|+++|+ .||.|.+++|+.| .+|.++|||||+
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~-~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS-ECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH-hcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 66665432220 01234567899999999999999999996 9999999999999 679999999999
Q ss_pred eCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCC
Q 021788 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 258 F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
|.+.++|.+|+..|||..|+|+.|.|.++.+|+.+
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999999999999999999999999999987543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=208.86 Aligned_cols=175 Identities=26% Similarity=0.495 Sum_probs=158.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..+..+.|.|.-||..+|+||||.||...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+ ...+++
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 344455689999999999999999999999999999999999999999999999999999999999999988 788999
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
|+|+.++... -....|||.+||...|..||..+|+ +||.|...+|+.|.-+|.+||.+||+|+...+|+.||..
T Consensus 115 VSyARPSs~~-----Ik~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDS-----IKDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhh-----hcccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 9999876443 3456899999999999999999997 999999999999999999999999999999999999999
Q ss_pred hcCceecC--eeEEEEecCCCCCCC
Q 021788 271 MNGVYCSS--RPMRIDVATPKKASG 293 (307)
Q Consensus 271 l~g~~i~g--~~i~v~~a~~k~~~~ 293 (307)
|||..-.| .+|.|+|+.....+.
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCccccc
Confidence 99987655 579999998764443
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=3.4e-29 Score=193.46 Aligned_cols=177 Identities=28% Similarity=0.554 Sum_probs=158.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
+.....+||||||+..++++-|.+||-..|+|.++.+.+|+.+...+|||||+|.++++|+-|++.|+...+ .+++++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeE
Confidence 345567999999999999999999999999999999999999999999999999999999999999997777 788888
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~-i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
++.+... .....-+..|||+||...+.|.-|.+.|+ .||.+.. -+|++|.+||.++||+||.|++.+.+.+|+.
T Consensus 83 v~kas~~----~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 83 VNKASAH----QKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEecccc----cccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 8887722 11223347899999999999999999997 9998765 4889999999999999999999999999999
Q ss_pred HhcCceecCeeEEEEecCCCCCCCc
Q 021788 270 EMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 270 ~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
.+||..+..++|+|.|+..|..++.
T Consensus 158 s~ngq~l~nr~itv~ya~k~~~kg~ 182 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKKDTKGE 182 (203)
T ss_pred HhccchhcCCceEEEEEEecCCCcc
Confidence 9999999999999999999877764
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.4e-28 Score=225.44 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=137.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHh--CCCCCCCCCCceEE
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY--SGSLMPNTDQPFRL 191 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~~~~~~v~~ 191 (307)
++++|||+|||+++++++|+++|+.||.|.+|.+++++ ++|||+|.+.++|.+|++.+ ++..+ .++.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 36899999999999999999999999999999998643 79999999999999999976 45555 7788999
Q ss_pred EeccCCCCCCcc-------cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHH
Q 021788 192 NWATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (307)
Q Consensus 192 ~~a~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A 264 (307)
.|+......... ......+|+|+||++.+|+++|+++|+ .||.|.+|.|+++.. +|+|||+|++.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 888654322211 111234789999999999999999996 999999999987643 46899999999999
Q ss_pred HHHHHHhcCceecC--eeEEEEecCCCC
Q 021788 265 SRAMTEMNGVYCSS--RPMRIDVATPKK 290 (307)
Q Consensus 265 ~~A~~~l~g~~i~g--~~i~v~~a~~k~ 290 (307)
.+|+..|||..|.+ +.|+|.|++++.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999999999853 689999998743
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=9.3e-28 Score=224.36 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=140.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....++|||+||++ .+|+++|+++|+.||.|.+|++++++ +|+|||+|.+.++|..|+..|+|..+ .++.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l--~g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKL--FGKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEE
Confidence 34678999999998 69999999999999999999999864 48999999999999999999999999 456677
Q ss_pred EEeccCCCCCC-------------c-------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC--e
Q 021788 191 LNWATFSGSDR-------------R-------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPS--V 236 (307)
Q Consensus 191 ~~~a~~~~~~~-------------~-------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~--v 236 (307)
|.+++...... . ....++.+|||+|||.++|+++|+++|+ .||. |
T Consensus 345 v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~-~~G~~~i 423 (481)
T TIGR01649 345 VCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFA-ENGVHKV 423 (481)
T ss_pred EEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHH-hcCCccc
Confidence 76664321000 0 0013467899999999999999999996 8998 8
Q ss_pred eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee------EEEEecCCC
Q 021788 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP------MRIDVATPK 289 (307)
Q Consensus 237 ~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~------i~v~~a~~k 289 (307)
+.+++..++ + ..+|+|||+|++.++|.+||..|||..|+++. |+|.||+++
T Consensus 424 ~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 424 KKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred eEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 888876543 2 35789999999999999999999999999885 999999875
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.1e-27 Score=222.78 Aligned_cols=169 Identities=18% Similarity=0.305 Sum_probs=138.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
.....++|||||||+.+|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 45667899999999999999999999975 23444443 3456899999999999999995 99
Q ss_pred CCCCCCCCCceEEEeccCCCCC------------------------CcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCC
Q 021788 179 GSLMPNTDQPFRLNWATFSGSD------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234 (307)
Q Consensus 179 g~~~~~~~~~v~~~~a~~~~~~------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G 234 (307)
|..+.+ ..|++......... ........++|||+|||+.+|+++|+++|. .||
T Consensus 244 g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G 320 (509)
T TIGR01642 244 SIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SFG 320 (509)
T ss_pred CeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC
Confidence 998854 55665432211000 000123357899999999999999999996 999
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 235 ~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
.|..+.|+++..+|.++|||||+|.+.++|..||..|||..|+|+.|+|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999999999999999999999999999999999999999999998754
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=192.48 Aligned_cols=176 Identities=27% Similarity=0.479 Sum_probs=158.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
....|||++||..+|..||..+|++||.|..-+|+.|..+|.+||.+||.|...++|+.|++.|||..-.+...++.|.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCc----------------------------------------------------------ccCCCCCeEEEcC
Q 021788 194 ATFSGSDRR----------------------------------------------------------TEACSDLSIFVGD 215 (307)
Q Consensus 194 a~~~~~~~~----------------------------------------------------------~~~~~~~~l~v~n 215 (307)
+..+..... .......+|||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 873321100 0112246899999
Q ss_pred CCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCC
Q 021788 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 216 lp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
|..+..|.-|-.+|. +||.|..|+|++|..+.+++||+||.+.+.++|.-||..|||..+++|.|.|.|...|.
T Consensus 286 Lspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 286 LSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred cCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999997 99999999999999999999999999999999999999999999999999999987653
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=8.1e-27 Score=220.75 Aligned_cols=173 Identities=19% Similarity=0.313 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+.+|+++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..+. +..|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 45679999999999999999999999999999999999989999999999999999999999999999994 5556666
Q ss_pred eccCCCCCCc-----------------------ccCCCCCeEEEcCCCCC--C--------CHHHHHHHHhhhCCCeeEE
Q 021788 193 WATFSGSDRR-----------------------TEACSDLSIFVGDLAPD--V--------TDSILQETFSSKYPSVKGA 239 (307)
Q Consensus 193 ~a~~~~~~~~-----------------------~~~~~~~~l~v~nlp~~--~--------t~~~l~~~F~~~~G~v~~i 239 (307)
++........ ....++.+|+|.|+... + ..++|+++|+ .||.|+.|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 6643221100 11235678999998642 1 2368999996 99999999
Q ss_pred EEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 240 ~i~~d~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
+|+++. .++...|+|||+|++.++|.+|+..|||..|+|+.|.|.|...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 998753 3456679999999999999999999999999999999999764
No 19
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=193.39 Aligned_cols=180 Identities=24% Similarity=0.457 Sum_probs=159.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC-CCCCCCceE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~v~ 190 (307)
..+.++||||-|...-.|||++.+|..||+|.+|.+.+.. +|.+|||+||.|.+..+|..||..|+|.. +.|....+-
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3477899999999999999999999999999999999988 79999999999999999999999999965 667777777
Q ss_pred EEeccCCCCC----------------------------------------------------------------------
Q 021788 191 LNWATFSGSD---------------------------------------------------------------------- 200 (307)
Q Consensus 191 ~~~a~~~~~~---------------------------------------------------------------------- 200 (307)
|.|+...++.
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 7777600000
Q ss_pred --------------------------------------------------------------------------------
Q 021788 201 -------------------------------------------------------------------------------- 200 (307)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (307)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred -----------------------CcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEE
Q 021788 201 -----------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257 (307)
Q Consensus 201 -----------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~ 257 (307)
...+....|.|||..||..+.+.||...|. .||.|.+.+|+.|+.|+.+|.|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeEe
Confidence 001224568999999999999999999997 99999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCCC
Q 021788 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (307)
Q Consensus 258 F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~ 293 (307)
|+++.+|.+||..|||+.|+-++|+|...+||..++
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999999999999999999999987653
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.3e-27 Score=207.05 Aligned_cols=171 Identities=20% Similarity=0.330 Sum_probs=150.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||+|.-.+++.+|+..+++..+. ++.+++..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~--Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE--GRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc--ceeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999995 4555555555
Q ss_pred CCCCCCc---------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEE
Q 021788 196 FSGSDRR---------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG 254 (307)
Q Consensus 196 ~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~a 254 (307)
.+..... .-+.+...|.|+||||.+.+.+|+.+|+ .||.|.+|.|++.+.++.+ |||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~dgklc-GFa 161 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKDGKLC-GFA 161 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCCCCcc-ceE
Confidence 3322210 0122356899999999999999999997 9999999999988776555 999
Q ss_pred EEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCC
Q 021788 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 255 fV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
||.|.+..+|.+|+..+|+..|+||+|-|.||.+|.
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999999999999999999999984
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=203.49 Aligned_cols=172 Identities=29% Similarity=0.498 Sum_probs=148.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
.-+|.|+||||.|.+.+|+.+|+.||.|.+|.|.+.+ .|+.+|||||.|.+..+|..|++.+|+..| .+++|-++|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5589999999999999999999999999999999776 566669999999999999999999999999 6788888887
Q ss_pred cCCCCC-------------------------------------------C---------------c--------------
Q 021788 195 TFSGSD-------------------------------------------R---------------R-------------- 202 (307)
Q Consensus 195 ~~~~~~-------------------------------------------~---------------~-------------- 202 (307)
-....- . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 511000 0 0
Q ss_pred -------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 203 -------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 203 -------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
.+.....+|||+|||+++|+++|.++|+ .||.|.++.|+.++.|++++|.|||.|.+..+|.+||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0001126899999999999999999997 99999999999999999999999999999999999998
Q ss_pred Hh-----cC-ceecCeeEEEEecCCCC
Q 021788 270 EM-----NG-VYCSSRPMRIDVATPKK 290 (307)
Q Consensus 270 ~l-----~g-~~i~g~~i~v~~a~~k~ 290 (307)
.. .| ..|+||.|+|..+.+++
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchH
Confidence 77 34 77899999999998874
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=7.7e-27 Score=198.10 Aligned_cols=174 Identities=18% Similarity=0.342 Sum_probs=152.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..-|+||||.|.+.+.|+.||..|..||+|++|.+..|+.|+++|||+||+|+-+|.|..|++.+||..++|+++.|.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg-- 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG-- 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc--
Confidence 457899999999999999999999999999999999999999999999999999999999999999999966555444
Q ss_pred eccCCCC------CCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 193 WATFSGS------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 193 ~a~~~~~------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
.-..-.. ....+...-++|||..+..+++|+||+..| |.||+|..|.+.+++.++.++||+||+|.+..+-..
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 2111000 011233456789999999999999999999 599999999999999999999999999999999999
Q ss_pred HHHHhcCceecCeeEEEEecCCC
Q 021788 267 AMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 267 A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
|+..||-+.++|..|+|-.+...
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HhhhcchhhcccceEecccccCC
Confidence 99999999999999999876544
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=8.4e-27 Score=192.45 Aligned_cols=151 Identities=23% Similarity=0.458 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
-+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||+.++...++.|++.|+|..|+ +..|+|.-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLh--g~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLH--GVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceec--ceEEEEEecc
Confidence 46999999999999999999999999999999974 8999999999999999999999995 4555555544
Q ss_pred CCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.+ ...+++|+|+||.+.++..||+..| ++||.|.++.|.+| |+||.|+..++|..|++.|||.+
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 33 4477899999999999999999999 59999999999876 89999999999999999999999
Q ss_pred ecCeeEEEEecCCCCCC
Q 021788 276 CSSRPMRIDVATPKKAS 292 (307)
Q Consensus 276 i~g~~i~v~~a~~k~~~ 292 (307)
|.|++++|..++++-+.
T Consensus 137 ~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccceeeeeeecccccc
Confidence 99999999999887543
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.1e-25 Score=184.23 Aligned_cols=142 Identities=37% Similarity=0.695 Sum_probs=125.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..++.++||||||+..+||+-|..||+..|.|.+++|+.| +++
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~ 44 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELK 44 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhc
Confidence 3467899999999999999999999999999999999986 455
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
+.|+.......+......--+||+.|...++.++|++.|. +||+|.+++|++|..|+++|||+||.|-+.++|+.||..
T Consensus 45 v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 45 VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 6665554333333333345699999999999999999997 999999999999999999999999999999999999999
Q ss_pred hcCceecCeeEEEEecCCCC
Q 021788 271 MNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 271 l~g~~i~g~~i~v~~a~~k~ 290 (307)
|||..|++|.||-.||++|.
T Consensus 124 MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hCCeeeccceeeccccccCc
Confidence 99999999999999999985
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2e-24 Score=201.78 Aligned_cols=168 Identities=20% Similarity=0.357 Sum_probs=140.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
.++|||+|||..+|+++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|+..|+|..+ .++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEc
Confidence 68999999999999999999999999999999999998999999999999999999999999999888 5677788774
Q ss_pred cCCCCC------------------------------------------------------------------C-------
Q 021788 195 TFSGSD------------------------------------------------------------------R------- 201 (307)
Q Consensus 195 ~~~~~~------------------------------------------------------------------~------- 201 (307)
...... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 311000 0
Q ss_pred ------------cccCCCCCeEEEcCCCCCCC----------HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeC
Q 021788 202 ------------RTEACSDLSIFVGDLAPDVT----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (307)
Q Consensus 202 ------------~~~~~~~~~l~v~nlp~~~t----------~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~ 259 (307)
.......++|+|.||....+ .+||+++|+ +||.|+.|.|... ...|++||+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~~----~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDTK----NSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeCC----CCceeEEEEEC
Confidence 00113457888999855444 378999996 9999999988633 45799999999
Q ss_pred CHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 260 DENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 260 ~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
+.++|.+|+..|||..|+|+.|.|.|....
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999999999999999999999999997653
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=187.67 Aligned_cols=177 Identities=25% Similarity=0.439 Sum_probs=149.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
+.++||||+|+|+++++.|+++|..||+|.+|.+++|+.+++++||+||+|.+++.+.++|... ...| .++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-THKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-cccc--CCcccccee
Confidence 7889999999999999999999999999999999999999999999999999999999888743 3334 344444444
Q ss_pred ccCCCCCCc-ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 194 a~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
+-.+....+ ......+++||++|+.+++++++++.|. +||.|.++.++.|..+.+++||+||.|++.+++.+++ .+.
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe-~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFE-QFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhhh-ccceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 433332222 1122567999999999999999999995 9999999999999999999999999999999999987 667
Q ss_pred CceecCeeEEEEecCCCCCCCcc
Q 021788 273 GVYCSSRPMRIDVATPKKASGYQ 295 (307)
Q Consensus 273 g~~i~g~~i~v~~a~~k~~~~~~ 295 (307)
-+.|.|+.+.|+.|.||......
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeeecCceeeEeeccchhhcccc
Confidence 78999999999999999766543
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.6e-24 Score=188.53 Aligned_cols=155 Identities=29% Similarity=0.589 Sum_probs=142.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
..|||| +++||..|.++|+.+|+|.++++.+|. + +.|||||.|.++++|++||..+|...+ .++++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 999999999999999999999999998 6 999999999999999999999999999 78899999976
Q ss_pred CCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.... .|||.||+.+++..+|.++|+ .||.|.+|+|.+|.+ | ++|| ||+|++.++|.+|+..|||..
T Consensus 74 rd~~----------~~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPS----------LVFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCc----------eeeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 4322 299999999999999999997 999999999999965 5 8999 999999999999999999999
Q ss_pred ecCeeEEEEecCCCCCC
Q 021788 276 CSSRPMRIDVATPKKAS 292 (307)
Q Consensus 276 i~g~~i~v~~a~~k~~~ 292 (307)
+.++.|.|....+++.+
T Consensus 140 l~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEER 156 (369)
T ss_pred cCCCeeEEeeccchhhh
Confidence 99999999888876543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.7e-24 Score=186.26 Aligned_cols=177 Identities=24% Similarity=0.443 Sum_probs=157.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC-CCCCCCceEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~v~~ 191 (307)
.+.++||||-|+..+||.||+++|++||.|++|+|++|. .|.+||||||.|.+.+.|..|++.|||.. +.|+..++-|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999998 79999999999999999999999999965 7889999999
Q ss_pred EeccCCCCCC----------------------------------------------------------------------
Q 021788 192 NWATFSGSDR---------------------------------------------------------------------- 201 (307)
Q Consensus 192 ~~a~~~~~~~---------------------------------------------------------------------- 201 (307)
.|++..+...
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 9998111000
Q ss_pred --------------------------------------------------------------------------------
Q 021788 202 -------------------------------------------------------------------------------- 201 (307)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (307)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ---------------------------------------------------------cccCCCCCeEEEcCCCCCCCHHH
Q 021788 202 ---------------------------------------------------------RTEACSDLSIFVGDLAPDVTDSI 224 (307)
Q Consensus 202 ---------------------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~ 224 (307)
..+......|||++||.+.-+.|
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 00012234799999999999999
Q ss_pred HHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCC
Q 021788 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (307)
Q Consensus 225 l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~ 291 (307)
|...|. .||.|...++..|+.|+-++.|+||.|++..+|..||..|||+.|+.++++|...+.+.+
T Consensus 441 l~~~f~-pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQ-PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhc-cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999996 999999999999999999999999999999999999999999999999999999777643
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=6.6e-24 Score=189.44 Aligned_cols=179 Identities=22% Similarity=0.440 Sum_probs=152.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++||+-.|...+++.+|.+||+.+|.|.+|.++.|+.+++++|.+||+|.|.+.+-.|+. |.|..+ .+.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcc--cCceeE
Confidence 45677899999999999999999999999999999999999999999999999999999999995 899988 455555
Q ss_pred EEeccCCCCCC---------cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 191 LNWATFSGSDR---------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 191 ~~~a~~~~~~~---------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
+.......... +.-..+...|||+||.+++++++|+.+| +.||.|+.|.+.+|.+||.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 44332111100 1112233449999999999999999999 5999999999999988999999999999999
Q ss_pred HHHHHHHHHhcCceecCeeEEEEecCCCCCCC
Q 021788 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (307)
Q Consensus 262 ~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~ 293 (307)
++|.+|+..|||++|.|+.|+|....-+-...
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999999887664433
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=4e-23 Score=189.18 Aligned_cols=172 Identities=19% Similarity=0.360 Sum_probs=145.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC---CcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
++|||.||++++|.++|..+|...|.|.++.|...++.. .+.|||||+|.+.++|.+|++.|+|+.|+|..+.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887755221 35699999999999999999999999997666666665
Q ss_pred eccCCCCCCc--ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 193 WATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 193 ~a~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
...+.....+ ......+.|+|.|||+..+-.+|+++|. .||.|.+|+|++....+.++|||||+|-++.+|.+|+..
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 5222211111 2223357899999999999999999996 999999999998755678899999999999999999999
Q ss_pred hcCceecCeeEEEEecCC
Q 021788 271 MNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 271 l~g~~i~g~~i~v~~a~~ 288 (307)
|.+..+.||.|.+.|++.
T Consensus 675 l~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred hcccceechhhheehhcc
Confidence 999999999999999875
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=1.7e-20 Score=175.45 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..++|||+||++++++++|+++|+.||.|.++++.+|+.+|+++|||||+|.+.++|.+|++.||+..+. ++.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg--Gr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEe
Confidence 4578999999999999999999999999999999999989999999999999999999999999999884 45555544
Q ss_pred c
Q 021788 194 A 194 (307)
Q Consensus 194 a 194 (307)
+
T Consensus 281 A 281 (612)
T TIGR01645 281 C 281 (612)
T ss_pred c
Confidence 3
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4e-21 Score=171.70 Aligned_cols=168 Identities=28% Similarity=0.449 Sum_probs=144.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccC
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~ 196 (307)
.|||.||+.+++..+|.++|+.||.|.+|++..+. +| ++|| ||+|++.++|.+|+..+||..+.+..+.+-+...+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999997 56 9999 999999999999999999999965555554444332
Q ss_pred CCCCCcc-cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 197 SGSDRRT-EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 197 ~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
....... ....-..++|.+++.+++++.|.++|. .||.|..+.++.+.. +.++||+||.|++.++|..|+..||+..
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCc
Confidence 2222211 233456799999999999999999996 999999999999965 6799999999999999999999999999
Q ss_pred ecCeeEEEEecCCC
Q 021788 276 CSSRPMRIDVATPK 289 (307)
Q Consensus 276 i~g~~i~v~~a~~k 289 (307)
+++..+.|..+..+
T Consensus 233 ~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 233 FGDKELYVGRAQKK 246 (369)
T ss_pred CCccceeecccccc
Confidence 99999999888874
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=9.4e-20 Score=163.04 Aligned_cols=165 Identities=19% Similarity=0.353 Sum_probs=128.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
..||||||.+++++++|+..|+.||.|..|.+.+|..||.++|||||+|.+.++|.+|+..|||..| .++.++|....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~ 356 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVT 356 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEee
Confidence 3499999999999999999999999999999999998999999999999999999999999999777 45555544322
Q ss_pred --CCCCCCc-----------------------------------------------------------------ccC---
Q 021788 196 --FSGSDRR-----------------------------------------------------------------TEA--- 205 (307)
Q Consensus 196 --~~~~~~~-----------------------------------------------------------------~~~--- 205 (307)
....... ...
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 1000000 000
Q ss_pred ----CCCCeEEEcCCCC--CCC--------HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 206 ----CSDLSIFVGDLAP--DVT--------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 206 ----~~~~~l~v~nlp~--~~t--------~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
.++.++.|.|+=. ..| .+|+.+.+. +||.|..|.|.+. +.|+.||.|.+.++|..|+.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHH
Confidence 1223444555322 122 278889995 9999998877543 2389999999999999999999
Q ss_pred cCceecCeeEEEEecCC
Q 021788 272 NGVYCSSRPMRIDVATP 288 (307)
Q Consensus 272 ~g~~i~g~~i~v~~a~~ 288 (307)
||.+|.|+.|++.|..-
T Consensus 511 hgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 511 HGRWFAGRMITAKYLPL 527 (549)
T ss_pred hhhhhccceeEEEEeeh
Confidence 99999999999999653
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=1.7e-19 Score=141.00 Aligned_cols=86 Identities=34% Similarity=0.644 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
...+++|||+||++++||++|+++|+ .||.|++++|++|+.+++++|||||+|++.++|.+|++.||+..|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021788 285 VATPKKA 291 (307)
Q Consensus 285 ~a~~k~~ 291 (307)
|++++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987654
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=1e-18 Score=140.79 Aligned_cols=162 Identities=22% Similarity=0.406 Sum_probs=138.9
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 115 TKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..||||.||+..+.-++|+. +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+ .+.+++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhh
Confidence 34999999999999999998 999999999998875 678899999999999999999999999999 677777
Q ss_pred EEeccCCCCCC---------------------------------------------cccCCCCCeEEEcCCCCCCCHHHH
Q 021788 191 LNWATFSGSDR---------------------------------------------RTEACSDLSIFVGDLAPDVTDSIL 225 (307)
Q Consensus 191 ~~~a~~~~~~~---------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l 225 (307)
+-|++.+...- .....+..+|++.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 77776332110 011345678999999999999999
Q ss_pred HHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecC
Q 021788 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (307)
Q Consensus 226 ~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~ 287 (307)
..+|. .|...++|+++..+ .+.|||+|.+...|..|...|.|..|. ...+.|.|++
T Consensus 164 ~~lf~-qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFE-QFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHh-hCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99995 99999999988653 468999999999999999999999887 8889998875
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.9e-18 Score=134.19 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=123.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||||||.++.|.+|.++|-+||.|.+|.+..- -....||||+|+++.+|+.||..-+|..+++ ..|+|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg--~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG--CRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCc--ceEEEE
Confidence 46789999999999999999999999999999987542 2345799999999999999999999999955 455666
Q ss_pred eccCCCCCCc---------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcc
Q 021788 193 WATFSGSDRR---------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251 (307)
Q Consensus 193 ~a~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~ 251 (307)
++..-..... ........|.|.+||.+-++.||+++.. +-|.|....+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 5542211100 1112335799999999999999999996 8999999999887
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 252 GYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 252 g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
|.++|+|-..|+-.-|++.|+...+.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 36899999999999999999886653
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=4.3e-18 Score=150.60 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=128.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.....|.+++|||++|++||.++|+-|+ |+++++.+ .+|+..|-|||+|.+.+++++|++. +...+ ..+-|.|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEEE
Confidence 4556799999999999999999999996 67766665 3699999999999999999999984 55555 45555555
Q ss_pred eccCCCCCCc------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHH
Q 021788 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERS 265 (307)
Q Consensus 193 ~a~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~-i~i~~d~~~~~~~g~afV~F~~~~~A~ 265 (307)
.+...+.... ......-+|.+++||+.+|++||.+||+ -.-.|.. |.++++. .+++.|.|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 5433222111 1113456899999999999999999996 5444444 4455664 4789999999999999999
Q ss_pred HHHHHhcCceecCeeEEEEecCC
Q 021788 266 RAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 266 ~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
+|+ .-|...|+-|.|.|-.+..
T Consensus 160 ~Al-~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 160 IAL-GRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHH-HHHHHhhccceEEeehhHH
Confidence 998 5677888999999876653
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=7.2e-18 Score=146.81 Aligned_cols=174 Identities=17% Similarity=0.283 Sum_probs=142.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....+.+||.|||+++.+.+|++||.+ .|+|+.|.++.|. +|+++|||.|+|+++|.+++|++.|+...+.++.+.+
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445567999999999999999999985 7899999999998 8999999999999999999999999999996655555
Q ss_pred EEEeccCC----------------------------C-----------CCCc----------------------------
Q 021788 190 RLNWATFS----------------------------G-----------SDRR---------------------------- 202 (307)
Q Consensus 190 ~~~~a~~~----------------------------~-----------~~~~---------------------------- 202 (307)
+-+..... . ...+
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 44333100 0 0000
Q ss_pred -----------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 203 -----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 203 -----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
...+...++||.||.+.+..+.|++.|. -.|.|..|.+-.|++ |.++|||.++|+.+-.|..||..|
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhh
Confidence 0112235799999999999999999996 899999999999977 699999999999999999999999
Q ss_pred cCceecCeeEEEEecC
Q 021788 272 NGVYCSSRPMRIDVAT 287 (307)
Q Consensus 272 ~g~~i~g~~i~v~~a~ 287 (307)
++.-+..++..++...
T Consensus 277 ~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLDR 292 (608)
T ss_pred ccCCCccccceeeccc
Confidence 9876777777777644
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=1.1e-16 Score=135.92 Aligned_cols=171 Identities=16% Similarity=0.287 Sum_probs=139.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
...++.|||+|||.++|.+++.++|++||.|. .|++.++. .|..||-|+|.|...++++.|+..|++..+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~- 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL- 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc-
Confidence 45566799999999999999999999999775 38888887 599999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCCC---------------------------------cccCCCCCeEEEcCCCC----CCC-----
Q 021788 184 NTDQPFRLNWATFSGSDR---------------------------------RTEACSDLSIFVGDLAP----DVT----- 221 (307)
Q Consensus 184 ~~~~~v~~~~a~~~~~~~---------------------------------~~~~~~~~~l~v~nlp~----~~t----- 221 (307)
++..++|..|.+..... .......++|.|.|+=. ..+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 68888888877432110 01112346888888632 222
Q ss_pred --HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCC
Q 021788 222 --DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 222 --~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
.+||++.+. +||.|.+|.|.- .++.|.+.|.|.+.++|..||..|+|++|+||.|.......+.
T Consensus 288 dlkedl~eec~-K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 288 DLKEDLTEECE-KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHH-HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 367778885 999999987752 4668999999999999999999999999999999998877654
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=2.4e-17 Score=128.83 Aligned_cols=85 Identities=32% Similarity=0.524 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+||++++||++|+++|+.||.|.+|+++.|+.+++++|||||+|++.++|++|++.|++..| .++.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999998 5678888
Q ss_pred EeccCCC
Q 021788 192 NWATFSG 198 (307)
Q Consensus 192 ~~a~~~~ 198 (307)
.++..+.
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 8886543
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.74 E-value=7.2e-17 Score=129.13 Aligned_cols=161 Identities=18% Similarity=0.272 Sum_probs=125.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee-cCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC-CCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~-~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-~~~~~ 188 (307)
.....+||||.+||.++...+|..||+.|-..+.+.+.. ++....++.+|||+|.+...|.+|+..|||..++ .....
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 445689999999999999999999999987666655543 3433456789999999999999999999999885 35667
Q ss_pred eEEEeccCCCCCCcc-----------------------------------------------------------------
Q 021788 189 FRLNWATFSGSDRRT----------------------------------------------------------------- 203 (307)
Q Consensus 189 v~~~~a~~~~~~~~~----------------------------------------------------------------- 203 (307)
+++++++......+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 888877632211100
Q ss_pred ----------------cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 204 ----------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 204 ----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
......+|||.||...+||++|+.+|+ .|.....++|... +|. ..|||+|++.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GGM--PVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CCc--ceEeecHHHHHHHHHH
Confidence 001124899999999999999999997 9998888776532 233 4799999999999999
Q ss_pred HHHhcCcee
Q 021788 268 MTEMNGVYC 276 (307)
Q Consensus 268 ~~~l~g~~i 276 (307)
+..|.|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999999876
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=3.6e-17 Score=150.42 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=130.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...+.|+|+|||..+..++|..+|..||+|..+-+.... --++|+|.++.+|..|++.|....+ ..-++.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 455789999999999999999999999999998444222 1489999999999999999988776 33344444
Q ss_pred eccCCCCC--------------------Cc-------------------------ccCCCCCeEEEcCCCCCCCHHHHHH
Q 021788 193 WATFSGSD--------------------RR-------------------------TEACSDLSIFVGDLAPDVTDSILQE 227 (307)
Q Consensus 193 ~a~~~~~~--------------------~~-------------------------~~~~~~~~l~v~nlp~~~t~~~l~~ 227 (307)
|+....-. .+ ......++|||.||+++.|.++|.+
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 33210000 00 0001123499999999999999999
Q ss_pred HHhhhCCCeeEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 228 TFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 228 ~F~~~~G~v~~i~i~~d~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.|. .+|.|..+.|.+.++.. .+.|||||+|.+.++|.+|++.|+|..|+|+.|.|+++.
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 997 89999999988765432 344999999999999999999999999999999999998
No 43
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.7e-17 Score=134.52 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|.|.||+.+++|++|+++|. +||.|.++.|.+|++||.++|||||.|++.++|.+||..|||.-++.-.|+|.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34778999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 021788 285 VATPK 289 (307)
Q Consensus 285 ~a~~k 289 (307)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99996
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=2.7e-17 Score=146.46 Aligned_cols=86 Identities=28% Similarity=0.511 Sum_probs=80.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.|++|+|++|+.+++++|||||+|.+.++|.+||..||+..|.++.|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 021788 284 DVATPKK 290 (307)
Q Consensus 284 ~~a~~k~ 290 (307)
.|+++..
T Consensus 182 ~~a~p~~ 188 (346)
T TIGR01659 182 SYARPGG 188 (346)
T ss_pred ecccccc
Confidence 9998753
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.3e-17 Score=135.77 Aligned_cols=152 Identities=19% Similarity=0.354 Sum_probs=127.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
..||||+||+.+.+.+|..||..||.+.++.+.. ||+||+|.+..+|..|+..|++..|.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4699999999999999999999999999987764 68999999999999999999999996555 7777776
Q ss_pred CC------CCCC---------cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCC
Q 021788 196 FS------GSDR---------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (307)
Q Consensus 196 ~~------~~~~---------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~ 260 (307)
.. .... .......+.|.|.++...+.+.+|.++|. .+|.+....+ .++++||+|++
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 32 1110 01133457899999999999999999996 9999955443 24589999999
Q ss_pred HHHHHHHHHHhcCceecCeeEEEEec
Q 021788 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 261 ~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.++|.+|+..|++..+.++.|++.+.
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=4.3e-16 Score=134.83 Aligned_cols=162 Identities=14% Similarity=0.279 Sum_probs=130.7
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 115 TKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 115 ~~~l~v~nLp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
++.|.|.||. ..+|.+-|..+|..||+|.+|+|+.++.+ -|+|.|.|...|..|++.|+|..|.+ +.+++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~g--k~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYG--KKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecC--ceEEEee
Confidence 6889999997 46899999999999999999999987753 69999999999999999999999954 6666666
Q ss_pred ccCCCCCCc------------------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEe
Q 021788 194 ATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (307)
Q Consensus 194 a~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~ 243 (307)
++-..-... ....++.+|++.|+|.+++||+|+..|.+.-+.|+..++.
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff- 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF- 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-
Confidence 652110000 1124567999999999999999999998554445555443
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC-eeEEEEecCC
Q 021788 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDVATP 288 (307)
Q Consensus 244 d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g-~~i~v~~a~~ 288 (307)
+..+.+|++.++++|+|..|+..++++.+++ ..|||+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2234599999999999999999999999974 5999999875
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.7e-16 Score=108.77 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
|||+|||.++|+++|+++|+ .||.|..+.+..+ .++..+|+|||+|++.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999996 8999999999998 6689999999999999999999999999999999986
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.9e-16 Score=127.45 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|.|.||+.+++|++|++||.+||.|..|.+.+|+.||.+||||||+|.+.++|.+||+.|+|.-+ ..+.|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LIL 261 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLIL 261 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEE
Confidence 3455889999999999999999999999999999999999999999999999999999999999999999888 78899
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
++.|+++.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998864
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.68 E-value=4.2e-16 Score=145.94 Aligned_cols=119 Identities=19% Similarity=0.297 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecC
Q 021788 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS 245 (307)
Q Consensus 166 ~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~ 245 (307)
-.++|.+||..++|..+. .......+..+...-........++|||+|||++++|++|+++|+ .||.|.+++|++|
T Consensus 18 ~~~~a~~a~~~~~gy~~~--~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~-~~G~I~~vrl~~D- 93 (578)
T TIGR01648 18 PDEAALKALLERTGYTLV--QENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFE-KAGPIYELRLMMD- 93 (578)
T ss_pred ccHHHHHHHHHhhCcccc--ccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHH-hhCCEEEEEEEEC-
Confidence 467889999989998873 333334444333322222234568999999999999999999996 9999999999999
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecCC
Q 021788 246 NTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATP 288 (307)
Q Consensus 246 ~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~~ 288 (307)
.+|+++|||||+|.+.++|.+||+.||+..|. |+.|.|.++..
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 78999999999999999999999999999885 88888877653
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=5.5e-16 Score=140.65 Aligned_cols=175 Identities=17% Similarity=0.314 Sum_probs=136.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......+.+||++||..++++.+++++..||++....++.|..+|.++||||.+|.++.....|+..|||..+.+..+.+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999996555555
Q ss_pred EEEeccCCCCCCc-----------------ccCCCCCeEEEcCCCCCCCH-------------HHHHHHHhhhCCCeeEE
Q 021788 190 RLNWATFSGSDRR-----------------TEACSDLSIFVGDLAPDVTD-------------SILQETFSSKYPSVKGA 239 (307)
Q Consensus 190 ~~~~a~~~~~~~~-----------------~~~~~~~~l~v~nlp~~~t~-------------~~l~~~F~~~~G~v~~i 239 (307)
...+......... ....+..+|.+.|+ +|+ |+++..++ +||.|..|
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v 439 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECA-KFGAVRSV 439 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhc-ccCceeEE
Confidence 4443332111111 11223334444442 222 45566776 89999999
Q ss_pred EEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 240 ~i~~d~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.|.++- .-.-..|..||+|.+.++|.+|..+|+|..|.+|.|...|-..
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 998872 2234458899999999999999999999999999999998543
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.66 E-value=5.6e-15 Score=126.59 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=133.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....+-.|.|++|...++|.+|.+.++.||+|.-+..+..+ ..+.|+|+|.+.|+.|+.......+...+..--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 44566789999999999999999999999999888777654 379999999999999998665555544455444
Q ss_pred EEeccCCCCCCcc--cCCCCCeEE--EcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 191 LNWATFSGSDRRT--EACSDLSIF--VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 191 ~~~a~~~~~~~~~--~~~~~~~l~--v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
++++......+.. ...++..|. |-|--+.+|.+.|.+++. ..|.|.+|.|++. +|. -|+|||++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEEEec--cce---eeEEeechhHHHHH
Confidence 5555333222221 122334444 445567899999999996 9999999999876 343 59999999999999
Q ss_pred HHHHhcCcee--cCeeEEEEecCCCCCCCcc
Q 021788 267 AMTEMNGVYC--SSRPMRIDVATPKKASGYQ 295 (307)
Q Consensus 267 A~~~l~g~~i--~g~~i~v~~a~~k~~~~~~ 295 (307)
|...|||..| +.++|+|+||+|.+-+-++
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeee
Confidence 9999999877 5689999999997655443
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.66 E-value=4.7e-15 Score=129.42 Aligned_cols=73 Identities=27% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.|+|+|+|||+++||..|++.|. .||.|.++.|+ ++|+++| .|+|.++++|+.|+..|+|..++||.|+|+|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfr-e~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFR-EIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHH-hccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 47899999999999999999996 89999999995 3477776 89999999999999999999999999999984
No 53
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=4.7e-16 Score=131.13 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=77.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|+|+|||+...|-||+.+|. +||.|.+|+|+.+. +-+|||+||+|++.+||++|..+|||..|.||+|+|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~-kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFE-KFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHH-hhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344567999999999999999999995 99999999999984 457999999999999999999999999999999999
Q ss_pred EecCCCC
Q 021788 284 DVATPKK 290 (307)
Q Consensus 284 ~~a~~k~ 290 (307)
+-++.+-
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9999873
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.7e-15 Score=127.34 Aligned_cols=169 Identities=17% Similarity=0.297 Sum_probs=131.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.-.+|||..+.++++|+||+..|+.||+|..|.+-+++..+.+|||+||+|.+..+-..|+..+|-..+ .+..+++..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEeccc
Confidence 446899999999999999999999999999999999998889999999999999999999999987777 344444432
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 021788 194 ATFSGS-------------------------------------------------------------------------- 199 (307)
Q Consensus 194 a~~~~~-------------------------------------------------------------------------- 199 (307)
.-..+.
T Consensus 287 ~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 287 CVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred ccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 210000
Q ss_pred ------------------------------------CCc-----------------------------------ccCCCC
Q 021788 200 ------------------------------------DRR-----------------------------------TEACSD 208 (307)
Q Consensus 200 ------------------------------------~~~-----------------------------------~~~~~~ 208 (307)
.++ .....+
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 000 000234
Q ss_pred CeEEEcCC--CCCCC---HHHHHHHHhhhCCCeeEEEEEecCCCCCc----ccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 021788 209 LSIFVGDL--APDVT---DSILQETFSSKYPSVKGAKVIIDSNTGRT----KGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (307)
Q Consensus 209 ~~l~v~nl--p~~~t---~~~l~~~F~~~~G~v~~i~i~~d~~~~~~----~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 279 (307)
+.+.++|. |.+++ +.+|++.+. +||.|.+|.|...+.++.- .-.-||+|....++.+|+.+|+|+.|+||
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr 525 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGR 525 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCc
Confidence 56777875 44444 478899996 9999999998877654421 23579999999999999999999999999
Q ss_pred eEEEEe
Q 021788 280 PMRIDV 285 (307)
Q Consensus 280 ~i~v~~ 285 (307)
++....
T Consensus 526 ~VvAE~ 531 (544)
T KOG0124|consen 526 KVVAEV 531 (544)
T ss_pred eeehhh
Confidence 987653
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=126.25 Aligned_cols=80 Identities=28% Similarity=0.448 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..-++||||+|+|.++.+.|+++|++||+|++..|+.|+.+|++||||||+|+|.++|.+|++.-+- .|+|+.-.+++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchh
Confidence 4456899999999999999999999999999999999999999999999999999999999996544 354444444443
Q ss_pred e
Q 021788 193 W 193 (307)
Q Consensus 193 ~ 193 (307)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=3.6e-14 Score=121.70 Aligned_cols=174 Identities=17% Similarity=0.163 Sum_probs=134.0
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 110 FTNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
....+.+.++|.+|.. .+..+.|..+|..||.|+.|++++.+. |.|.|++.|..+.++|+..|++..+.|..+.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 4556788999999986 577899999999999999999998764 6899999999999999999999999655555
Q ss_pred eEEEeccCCC------------------------------CCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE
Q 021788 189 FRLNWATFSG------------------------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238 (307)
Q Consensus 189 v~~~~a~~~~------------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~ 238 (307)
+.++.-..-. ..+..-..++++|+.-|.|..+||+.|.++|.++--...+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 5444322100 0001223567899999999999999999999743333456
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe------eEEEEecCCCC
Q 021788 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR------PMRIDVATPKK 290 (307)
Q Consensus 239 i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~------~i~v~~a~~k~ 290 (307)
++|+..+. .+ ..-+++||+++++|..||..||...|.+. .|++-|++++.
T Consensus 437 vkvFp~ks-er-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 437 VKVFPLKS-ER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred EEeecccc-cc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 66665542 22 34689999999999999999999888643 57888887764
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3e-16 Score=126.94 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
+..-++||||+|+|.++.|+|+++| |.||+|++..|+.|+.+|++|||+||+|.|.++|.+|+.. -+-.|+||+..|+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 3455789999999999999999999 5999999999999999999999999999999999999843 3467899999888
Q ss_pred ecCC
Q 021788 285 VATP 288 (307)
Q Consensus 285 ~a~~ 288 (307)
.|.=
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7653
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=130.04 Aligned_cols=153 Identities=23% Similarity=0.357 Sum_probs=118.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
.++|||+|||+++|+++|+++|..||.|..+.+..|+.+|.++|+|||+|.+.++|..|+..+++..+ .++.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999 5556666663
Q ss_pred c----CCCCCC---------------cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEE
Q 021788 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (307)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~af 255 (307)
. ...... .........+++.+++..++..++...|. .+|.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 2 111111 12234457899999999999999999996 999997777666544333444444
Q ss_pred EEeCCHHHHHHHHHH
Q 021788 256 VRFGDENERSRAMTE 270 (307)
Q Consensus 256 V~F~~~~~A~~A~~~ 270 (307)
+.+.....+...+..
T Consensus 272 ~~~~~~~~~~~~~~~ 286 (306)
T COG0724 272 VGNEASKDALESNSR 286 (306)
T ss_pred cchhHHHhhhhhhcc
Confidence 444444444444433
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.9e-15 Score=103.76 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
|+|+|||+++++++|+++|+ .||.|..+.+..++. +..+|+|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999996 999999999999977 89999999999999999999999999999999985
No 60
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=1e-14 Score=126.46 Aligned_cols=164 Identities=17% Similarity=0.324 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.--+++|+++-+-+|-|-|..+|++||.|..|....+.+ | --|+|.|.+.+.|..|...|+|.-+.+..-.++++|
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-G---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-c---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 344679999999999999999999999999887665432 1 248999999999999999999999998888999988
Q ss_pred ccCCCCCCc--------------------------------------------------------ccCC--CCCeEEEcC
Q 021788 194 ATFSGSDRR--------------------------------------------------------TEAC--SDLSIFVGD 215 (307)
Q Consensus 194 a~~~~~~~~--------------------------------------------------------~~~~--~~~~l~v~n 215 (307)
++......+ .-.. .++.|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 872110000 0001 146788889
Q ss_pred CCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 216 LAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 216 lp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
|.. .+|.+.|..+|+ .||+|.+|+|+.++. -.|+|.|.|...|.-|++.|+|..+.|+.|+|.+++
T Consensus 305 ln~~~VT~d~LftlFg-vYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFG-VYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred CchhccchhHHHHHHh-hhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 875 599999999997 999999999998754 369999999999999999999999999999999998
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=9.3e-16 Score=112.30 Aligned_cols=83 Identities=28% Similarity=0.560 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....+++||||||++.++|+.|.+||+.+|+|..|.+-.|+.+....|||||+|.+.++|+.|++.++|..+ ..++++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir 109 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIR 109 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--ccccee
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999 667788
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
++|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 77754
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.4e-15 Score=117.55 Aligned_cols=79 Identities=24% Similarity=0.491 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
-.++|||+||+..+++.||..+|. .||.|..|||... +.|||||||+++.+|..|+..|+|+.|.|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 467999999999999999999997 9999999999864 4689999999999999999999999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
+-+.+
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86644
No 63
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.5e-16 Score=125.75 Aligned_cols=89 Identities=27% Similarity=0.564 Sum_probs=84.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++||||+|...|+|.-|...|- +||.|++|.+..|-++.++|||+||+|+-.|+|.+||..||+.++.||.|+|.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccc
Q 021788 287 TPKKASGYQQ 296 (307)
Q Consensus 287 ~~k~~~~~~~ 296 (307)
+|.+.+.-++
T Consensus 88 kP~kikegsq 97 (298)
T KOG0111|consen 88 KPEKIKEGSQ 97 (298)
T ss_pred CCccccCCCC
Confidence 9998776654
No 64
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-14 Score=128.92 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=118.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcCc---eEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEG---YGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g---~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
....-.++||||+||++++|+.|...|..||.+.-=+-.+....+ ..+| |+|+.|+++..+...+....- ..
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 334556789999999999999999999999976432222222122 2456 999999999998887765432 11
Q ss_pred CCCceEEEeccCCCC----------------CCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCC
Q 021788 185 TDQPFRLNWATFSGS----------------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG 248 (307)
Q Consensus 185 ~~~~v~~~~a~~~~~----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~ 248 (307)
....++++-...+.. ......++.+|||||+||..++.++|..+|...||.|..+.|-.|++-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 223333332222211 1223456789999999999999999999997799999999999998899
Q ss_pred CcccEEEEEeCCHHHHHHHHH
Q 021788 249 RTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 249 ~~~g~afV~F~~~~~A~~A~~ 269 (307)
.++|-|-|+|.+-.+-.+||.
T Consensus 411 YPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCCcceeeecccHHHHHHHh
Confidence 999999999999999999995
No 65
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=4.4e-15 Score=123.85 Aligned_cols=90 Identities=27% Similarity=0.530 Sum_probs=85.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
.++-+||||+-|+++++|.+|++.|+ .||.|+.|+|+.|..||.++|||||+|++..+..+|.+..+|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 46789999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
+-.-+.-++|-
T Consensus 177 vERgRTvkgW~ 187 (335)
T KOG0113|consen 177 VERGRTVKGWL 187 (335)
T ss_pred ecccccccccc
Confidence 98888777773
No 66
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1.6e-15 Score=120.14 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
.....+|.|-||.+.+|.++|+.+|+ +||.|.+|.|..|+.|+.++|||||.|.+..+|+.|+++|+|..++|+.|+|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFe-kYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFE-KYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHH-HhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44567899999999999999999995 99999999999999999999999999999999999999999999999999988
Q ss_pred ecC
Q 021788 285 VAT 287 (307)
Q Consensus 285 ~a~ 287 (307)
+++
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 876
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.9e-15 Score=123.94 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.++|||+||++.+|+++|+++|+ .||.|++|+|.+|+. .+|||||+|++.++|..|| .|||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999996 999999999998854 4789999999999999999 699999999999999987
Q ss_pred C
Q 021788 288 P 288 (307)
Q Consensus 288 ~ 288 (307)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 68
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=8.3e-15 Score=128.33 Aligned_cols=124 Identities=21% Similarity=0.297 Sum_probs=95.5
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE---eccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee
Q 021788 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN---WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (307)
Q Consensus 161 fV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~---~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~ 237 (307)
.-...+.++|..+|..-.|..| .+... +..+.+..........+-||||.||.++.|++|.-+| ++.|.|-
T Consensus 38 ~~~~~~~eaal~al~E~tgy~l-----~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~ 111 (506)
T KOG0117|consen 38 VAGVQSEEAALKALLERTGYTL-----VVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIY 111 (506)
T ss_pred ccccccHHHHHHHHHHhcCceE-----EEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHH-Hhcccee
Confidence 3344556777777765554333 11111 1112222222333567899999999999999999999 5999999
Q ss_pred EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecCCCC
Q 021788 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPKK 290 (307)
Q Consensus 238 ~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~~k~ 290 (307)
+++|++|+.+|.+||||||+|.+.++|.+|++.||+.+|. |+.|.|..+..+-
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC 165 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc
Confidence 9999999999999999999999999999999999999996 9999999887553
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.9e-15 Score=109.73 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..+++|||+||.+.++||.|.++|+ ++|+|.+|.+-.|+.+..+=|||||+|.+.++|..|++-++|..++.++|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4678999999999999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 021788 286 AT 287 (307)
Q Consensus 286 a~ 287 (307)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=3.9e-15 Score=101.98 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|+.|++.++|..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 578999999999999999999999999988843
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=6.9e-15 Score=124.16 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|+|+|||+...|-||+.+|.+||.|.+|+|+.+. ..+||||||+|++.++|++|.++|+|..++| ++|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG--RkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG--RKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec--eEE
Confidence 345677899999999999999999999999999999999864 5689999999999999999999999999955 555
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|+.+..+
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 55555544
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.2e-16 Score=121.61 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
...+..|||||||+.+||.||.-+|+ .||+|++|.+++|+.||.++||||+-|++-.+..-|+..|||..|.||.|+|.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 45677899999999999999999997 99999999999999999999999999999999999999999999999999998
Q ss_pred ecCCC
Q 021788 285 VATPK 289 (307)
Q Consensus 285 ~a~~k 289 (307)
..-.-
T Consensus 111 Hv~~Y 115 (219)
T KOG0126|consen 111 HVSNY 115 (219)
T ss_pred ecccc
Confidence 76543
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.9e-14 Score=127.53 Aligned_cols=79 Identities=19% Similarity=0.403 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHhcCceecCeeEEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE--NERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~--~~A~~A~~~l~g~~i~g~~i~v 283 (307)
....+||||||.+.+|++||+..|+ .||.|.+|.|+ +++| ||||||+|.+. +++.+||..|||..+.||.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3557899999999999999999997 99999999999 4567 89999999987 7899999999999999999999
Q ss_pred EecCCC
Q 021788 284 DVATPK 289 (307)
Q Consensus 284 ~~a~~k 289 (307)
.-|+++
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999986
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=9.5e-14 Score=94.91 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
+|+|+|||..+++++|+++|. .||.|.++.+..++ +.++|+|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999996 99999999998876 6788999999999999999999999999999999874
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=1.7e-13 Score=114.69 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
.++|||+||++.+|+++|+++|+.||.|.+|+|+.|+. .+|||||+|++.++|+.||. |+|..| .++.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998763 46899999999999999995 999999 6777888776
Q ss_pred cC
Q 021788 195 TF 196 (307)
Q Consensus 195 ~~ 196 (307)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7.1e-14 Score=98.65 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.-++.|||.|||+++|.|++.++|. +||.|..|+|--.++ .+|-|||-|++..+|.+|++.|+|..+.++.|.|-|
T Consensus 16 evnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3467899999999999999999997 999999999986654 489999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021788 286 ATPKKA 291 (307)
Q Consensus 286 a~~k~~ 291 (307)
-.+.+.
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 877543
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=4e-14 Score=97.09 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=60.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
|||+|||+++++++|+++|+.+|.|.++.+..++. |.++++|||+|.+.++|.+|++.+++..+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999986 8999999999999999999999998888743
No 78
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=2.7e-14 Score=129.06 Aligned_cols=85 Identities=31% Similarity=0.563 Sum_probs=81.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
+++||||+|+++++++|.++|+ ..|.|.+++++.|+++|+++||||++|.+.++|.+|++.|||.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999997 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCc
Q 021788 289 KKASGY 294 (307)
Q Consensus 289 k~~~~~ 294 (307)
.+++.+
T Consensus 98 ~~~~~~ 103 (435)
T KOG0108|consen 98 RKNAER 103 (435)
T ss_pred cchhHH
Confidence 766544
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=9.5e-14 Score=94.56 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 213 v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
|+|||..+++++|+++|. .||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999996 99999999999988788999999999999999999999999999999999874
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.3e-14 Score=108.83 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++||||||+..+++.||..+|..||+|.+|+|-..+ .|||||+|+++.+|+.|+..|+|..|. +..++|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~c--G~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDIC--GSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCcccc--CceEEEE
Confidence 347899999999999999999999999999999998755 389999999999999999999999994 4445555
Q ss_pred ecc
Q 021788 193 WAT 195 (307)
Q Consensus 193 ~a~ 195 (307)
+..
T Consensus 81 ~S~ 83 (195)
T KOG0107|consen 81 LST 83 (195)
T ss_pred eec
Confidence 444
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.6e-14 Score=116.20 Aligned_cols=87 Identities=22% Similarity=0.365 Sum_probs=77.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
.....++-+||||+-|+++++|+.|+..|+.||+|+.|.|+.|+.||+++|||||+|++..+...|.+..+|..|++..+
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 33455788999999999999999999999999999999999999999999999999999999999999999999966555
Q ss_pred ceEEEec
Q 021788 188 PFRLNWA 194 (307)
Q Consensus 188 ~v~~~~a 194 (307)
.|.+...
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 5555443
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=112.69 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
...+|+|+||++.+|+++|+++|+ .||.|.+|+|.+|. ..+++|||+|++.++|..|+ .|+|..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 356899999999999999999997 99999999999984 44589999999999999999 99999999999999886
Q ss_pred C
Q 021788 287 T 287 (307)
Q Consensus 287 ~ 287 (307)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=2.9e-15 Score=116.34 Aligned_cols=83 Identities=23% Similarity=0.457 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...++.-|||||||+.+||.||..+|++||+|++|.+++|+.||+++||||+.|++-.+...|+..|||..+ .++.|+
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtir 108 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIR 108 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEE
Confidence 455777899999999999999999999999999999999999999999999999999999999999999999 778888
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
|+...
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 87654
No 84
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=117.15 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=123.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh---c-CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSH---T-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~---~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
.+.-.|.+++||+++++.++.++|.. . |.+++|-+++.. +|+..|-|||.|..+++|..||.+.... + ..+-
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~-i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQN-I--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHH-H--hHHH
Confidence 34557899999999999999999963 2 355667666655 7999999999999999999999753321 2 1111
Q ss_pred eEEEecc--------------------CC------CCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE---E
Q 021788 189 FRLNWAT--------------------FS------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG---A 239 (307)
Q Consensus 189 v~~~~a~--------------------~~------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~---i 239 (307)
|.+-.+. .. ............+|.+++||+..+.|||.+||. .|-.-.+ |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhccccee
Confidence 1111000 00 000001122356899999999999999999996 5654332 5
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 240 ~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.+..+. .|++.|.|||+|.+.++|.+|...++++...+|+|.|--+.
T Consensus 314 Hmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 314 HMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred EEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 666664 58999999999999999999999999988899999997654
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.47 E-value=3.2e-14 Score=116.21 Aligned_cols=170 Identities=32% Similarity=0.451 Sum_probs=136.9
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 117 TIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~-l--~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.++++++-..+..+- | ...|+.+-.+...+++++. -+..++++|+.|+....-.++-..-+++.+ ....|++.-
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~a~ 174 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRLAA 174 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceeecc
Confidence 456677666555544 3 6778888778888888876 577789999999988888777776677766 445566655
Q ss_pred ccCCCCCC-cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 194 ATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 194 a~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
+..-+... ..++....+||+|.|..+++++.|.+.|+ +|......++++|+.||+++||+||.|.+..++..|++.|+
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 44333222 23455667899999999999999999996 99999999999999999999999999999999999999999
Q ss_pred CceecCeeEEEEecCCCC
Q 021788 273 GVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 273 g~~i~g~~i~v~~a~~k~ 290 (307)
|++++.|.|+++-+.-|.
T Consensus 254 gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccchhHhhhhhHHh
Confidence 999999999998877665
No 86
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=8.3e-14 Score=125.90 Aligned_cols=80 Identities=25% Similarity=0.554 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
+.|||||||++++|++|.++|+..|.|.+++++.|+.+|+++|||||+|.+.+++..|++.|+|..+ .++.++++|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 77888888887
Q ss_pred CC
Q 021788 196 FS 197 (307)
Q Consensus 196 ~~ 197 (307)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 43
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=9.6e-14 Score=110.10 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
+.+...+|.|-||.+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|.+| .+++|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 456778999999999999999999999999999999999999999999999999999999999999999999 556666
Q ss_pred EEeccC
Q 021788 191 LNWATF 196 (307)
Q Consensus 191 ~~~a~~ 196 (307)
|.++..
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 666653
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=102.37 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.....|||.++....||++|.+.|. .||+|+.|.+-.|+.||..+|||+|+|++.+.|.+|+..|||..+.|..|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3456899999999999999999997 899999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 021788 286 ATP 288 (307)
Q Consensus 286 a~~ 288 (307)
.--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 653
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=6.5e-13 Score=115.35 Aligned_cols=80 Identities=38% Similarity=0.721 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.++|||+|||+++|+++|+++|. .||.|..+.+..|+.++.++|||||+|.+.++|..|+..++|..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999996 99999999999998899999999999999999999999999999999999999965
Q ss_pred C
Q 021788 288 P 288 (307)
Q Consensus 288 ~ 288 (307)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=9.5e-13 Score=90.39 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
+|+|+|||..+++++|+++|. .||.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..++|+.|.|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999996 8999999999988664 7789999999999999999999999999999999875
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=92.46 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
..+...++.|||+|||+++|.+++.++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+ .++.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ry 86 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRY 86 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCce
Confidence 3456778899999999999999999999999999999887644 5679999999999999999999999988 5666
Q ss_pred eEEEec
Q 021788 189 FRLNWA 194 (307)
Q Consensus 189 v~~~~a 194 (307)
+.+.+-
T Consensus 87 l~vlyy 92 (124)
T KOG0114|consen 87 LVVLYY 92 (124)
T ss_pred EEEEec
Confidence 666553
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=109.00 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
...+|||+||++.+|+++|+++|+.||+|.+|+|++|. ..+++|||+|+++++++.|+. |+|..| .++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCee--CCceEEEEe
Confidence 45799999999999999999999999999999999884 455899999999999999995 999999 556677665
Q ss_pred cc
Q 021788 194 AT 195 (307)
Q Consensus 194 a~ 195 (307)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 44
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=6.5e-13 Score=90.89 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=55.2
Q ss_pred HHHHHHHHhh----hCCCeeEEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 222 ~~~l~~~F~~----~~G~v~~i~-i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
+++|+++| + .||.|.++. |..++.+ ++++|||||+|.+.++|.+|+..|||..++|+.|+++
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 56777777 4 899999996 7777776 8999999999999999999999999999999999873
No 94
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=105.85 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
...+|||+||+..++++-|.++|. ..|.|.+++|.+|+.+...+|||||+|.+.|+|.-|+..||...+.||+|+|+.+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456999999999999999999997 9999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 021788 287 T 287 (307)
Q Consensus 287 ~ 287 (307)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.1e-12 Score=85.72 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 225 l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
|.++|+ +||+|.++.+..+. +++|||+|.+.++|.+|++.|||..++|+.|+|.||
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678996 99999999987653 579999999999999999999999999999999996
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=7.1e-13 Score=117.69 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCH--HHHHHHHHHhCCCCCCCCCCceE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR--AAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~--~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....+||||||++.+++++|+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||..|+|..+ .++.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 3457899999999999999999999999999999994 466 89999999987 789999999999999 667777
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
|..++
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 77776
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7e-13 Score=98.17 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.-.|||.++...++|++|.+.|..||+|.+|.+..|..||..|||++|+|++.+.|.+|+..+||..| .+..|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEE
Confidence 4455799999999999999999999999999999999999999999999999999999999999999999 67777777
Q ss_pred eccCC
Q 021788 193 WATFS 197 (307)
Q Consensus 193 ~a~~~ 197 (307)
|.-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 76544
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.9e-13 Score=103.49 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..+++|||+|||.++.+.||.++|. +||.|..|.+... .....||||+|++..+|..||..-+|..++|+.|+|.|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3568999999999999999999997 9999999987643 23457999999999999999999999999999999999
Q ss_pred cCCCC
Q 021788 286 ATPKK 290 (307)
Q Consensus 286 a~~k~ 290 (307)
+..-+
T Consensus 80 prggr 84 (241)
T KOG0105|consen 80 PRGGR 84 (241)
T ss_pred ccCCC
Confidence 77543
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=88.69 Aligned_cols=66 Identities=33% Similarity=0.582 Sum_probs=61.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
+|+|+|||..+++++|+++|..||.|.++.+..++ +.++|+|||+|.+.++|..|+..+++..+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999999999999999876 7788999999999999999999999887743
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=3e-12 Score=87.01 Aligned_cols=69 Identities=36% Similarity=0.650 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 120 v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
|+|||..+++++|+++|..||.|.++.+..++.++.++|+|||+|.+.++|.+|++.+++..+. +..++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~--~~~~~ 69 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD--GRPLK 69 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 6899999999999999999999999999998878999999999999999999999999988884 44444
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.1e-13 Score=106.93 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++||||+|..+++|.-|...|-+||.|.+|.+..|..+++.+||+||+|...++|.+|+..+|+..| .++.++|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999 78889999
Q ss_pred eccCCC
Q 021788 193 WATFSG 198 (307)
Q Consensus 193 ~a~~~~ 198 (307)
++++..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 988654
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.8e-12 Score=110.68 Aligned_cols=90 Identities=26% Similarity=0.446 Sum_probs=83.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
.++.++|||-.|.+-+|++||.-+|+ .||.|..|.|++|..||.+--||||+|++.++|.+|.-.|++..|+.+.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35778999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
|+.+=....|.
T Consensus 315 FSQSVsk~k~r 325 (479)
T KOG0415|consen 315 FSQSVSKVKYR 325 (479)
T ss_pred hhhhhhhhhcc
Confidence 98865444443
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4e-12 Score=115.73 Aligned_cols=173 Identities=20% Similarity=0.366 Sum_probs=135.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
.....+.++|+++++.++++.+-.+|..- | .+..+.+...+ .++|++|.+.++|..|+. ++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-LD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-cc
Confidence 34566789999999999999999888764 3 36666666555 599999999999999997 56
Q ss_pred CCCCCCCCCceEEEeccCC----------------CCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEE
Q 021788 179 GSLMPNTDQPFRLNWATFS----------------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI 242 (307)
Q Consensus 179 g~~~~~~~~~v~~~~a~~~----------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~ 242 (307)
+..+.|....+........ ...........+.++|++||..++++.+++++. .||.+....+.
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~-~fg~lk~f~lv 322 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD-SFGPLKAFRLV 322 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH-hcccchhheee
Confidence 6655333322222111100 001112234457899999999999999999995 99999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCC
Q 021788 243 IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (307)
Q Consensus 243 ~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~ 291 (307)
+|..+|.++||||.+|.+......|+..|||..+++..|.|..+-.-..
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 9999999999999999999999999999999999999999999876543
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.33 E-value=1.5e-12 Score=112.61 Aligned_cols=178 Identities=22% Similarity=0.311 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...+++|++++.+.+.+.++..++...|.+.+..+........++|++++.|+..+.+..|+.......+.+......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35778999999999999999999999998888888887778899999999999999999999865544553333322222
Q ss_pred eccCCC---CCCc-ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021788 193 WATFSG---SDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 193 ~a~~~~---~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (307)
...... .... ........++|++|+..+++++|+++|. .+|.|..+++..++.++..+|||+|.|.+...+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 222110 1111 1223334455999999999999999996 9999999999999999999999999999999999998
Q ss_pred HHhcCceecCeeEEEEecCCCCCC
Q 021788 269 TEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 269 ~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
.. ....+.+++++|.+.++....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 888999999999999987433
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=2.1e-11 Score=83.61 Aligned_cols=73 Identities=36% Similarity=0.641 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
+|+|+|||..+++++|+++|..+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+ .+..+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEe
Confidence 5899999999999999999999999999999988744 7789999999999999999999999887 44555443
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.30 E-value=6.3e-11 Score=105.62 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=118.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
...-+|.+++||+.||++||.++|+..-.|.+ |.++.|. .+++.|-|||.|++.+.|+.||.... ..|..+ -|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr-e~iGhR--YIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR-ENIGHR--YIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH-Hhhccc--eEEe
Confidence 35568999999999999999999999876666 4455555 78899999999999999999996432 112111 1111
Q ss_pred Eecc-----------------------------------CCC--------------------------------------
Q 021788 192 NWAT-----------------------------------FSG-------------------------------------- 198 (307)
Q Consensus 192 ~~a~-----------------------------------~~~-------------------------------------- 198 (307)
..+. ...
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 0000 000
Q ss_pred -------CCCc--------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHH
Q 021788 199 -------SDRR--------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263 (307)
Q Consensus 199 -------~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~ 263 (307)
.... ........++.++||+..++.+|..+|+ ......|.|-..+ +|+..|-|+|+|.+.++
T Consensus 257 ~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFs--pl~p~~v~i~ig~-dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 257 PNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFS--PLNPYRVHIEIGP-DGRATGEADVEFATGED 333 (510)
T ss_pred cccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcC--CCCceeEEEEeCC-CCccCCcceeecccchh
Confidence 0000 0001115688899999999999999996 4455577777664 58999999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEecC
Q 021788 264 RSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 264 A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
|..|+ .-++..+..+.|.+-..-
T Consensus 334 av~Am-skd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 334 AVGAM-GKDGANMGHRYVELFLNG 356 (510)
T ss_pred hHhhh-ccCCcccCcceeeecccC
Confidence 99998 667777888888776543
No 107
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=7.9e-12 Score=104.25 Aligned_cols=72 Identities=22% Similarity=0.526 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.+|||+|||..+++.+|+.+| ++||.|.+|.|+++ ||||..++...|..||+.|||..|+|-.|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 369999999999999999999 59999999999976 899999999999999999999999999999999998
Q ss_pred C
Q 021788 289 K 289 (307)
Q Consensus 289 k 289 (307)
|
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 8
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.6e-12 Score=104.05 Aligned_cols=146 Identities=20% Similarity=0.382 Sum_probs=121.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
.+..++|||+|+...++|+-|.++|-..|+|..+.|..++ .+..| ||||.|+++-.+..|++.+||..+.+..+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~-- 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR-- 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc--
Confidence 4567899999999999999999999999999999998877 57777 9999999999999999999999885443333
Q ss_pred EeccCCCCCCcccCCCCCeEEEcC----CCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 192 NWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
+++.|+ |...++++-+.+.|+ .-|.+..+++..+.+ |+.+-+.|+.+...-+.-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 344455 677899999999997 899999999998866 78888999999888888888
Q ss_pred HHHhcCceecCeeE
Q 021788 268 MTEMNGVYCSSRPM 281 (307)
Q Consensus 268 ~~~l~g~~i~g~~i 281 (307)
+....+...--+++
T Consensus 142 ~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 142 LDLYQGLELFQKKV 155 (267)
T ss_pred hhhhcccCcCCCCc
Confidence 87777755443333
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=5.2e-13 Score=125.63 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=133.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..+++||+||+..+.+.+|...|..+|.+..+.+....++++.+|+||++|.+++++.+|+....+..+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4457899999999999999999999999988888766778999999999999999999999976666552
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
...|+|.|+|+..|.++|+.+++ .+|++.+++++..+. |+++|.|+|.|.+..+|.+++...+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchh
Confidence 23699999999999999999996 999999999887754 89999999999999999999988888
Q ss_pred ceecCeeEEEEecCCC
Q 021788 274 VYCSSRPMRIDVATPK 289 (307)
Q Consensus 274 ~~i~g~~i~v~~a~~k 289 (307)
..+..+.+.|..+.|.
T Consensus 800 ~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhcCccccccCCc
Confidence 8888888888887664
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=5.3e-11 Score=96.44 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~----~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
++.||||.||+..+..++|++ +|+ .||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|+.|.|++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 444999999999999999998 996 999999998874 467899999999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|.||+.+...-.
T Consensus 84 iqyA~s~sdii~ 95 (221)
T KOG4206|consen 84 IQYAKSDSDIIA 95 (221)
T ss_pred eecccCccchhh
Confidence 999998754433
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4.6e-11 Score=111.50 Aligned_cols=108 Identities=23% Similarity=0.392 Sum_probs=89.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
++|||||.|+..+++.||+.+|+.||+|.+|.++... |||||.+....+|++|+..|+...+ ..+.+++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 4689999999999999999999999999999998755 7999999999999999999998887 7889999998
Q ss_pred cCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 021788 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230 (307)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (307)
-......+..+.....|-|.-|||.--.+||+.++.
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 765444433344445566777898755555777773
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=79.46 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=50.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 129 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||+|.+.++|.+|++.|+|..+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578889998 999999995 7777666 8999999999999999999999999999844
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=4.1e-11 Score=104.11 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||++|.|++++|.|++.|+ .||+|.++.|++|+.+++++||+||+|++.+...+++ ....+.|+|+.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 678999999999999999999996 9999999999999999999999999999999999887 45557899999999999
Q ss_pred CCCCCCCc
Q 021788 287 TPKKASGY 294 (307)
Q Consensus 287 ~~k~~~~~ 294 (307)
.+++....
T Consensus 83 v~r~~~~~ 90 (311)
T KOG4205|consen 83 VSREDQTK 90 (311)
T ss_pred cCcccccc
Confidence 99875443
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=98.55 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=70.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPM 281 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~i~g~~i 281 (307)
.++....+|||++|...++|.||+++|- +||+|+.|+++.. +++|||+|.+.++|+.|...+ |...|+|++|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4566778999999999999999999996 9999999998755 459999999999999998766 5567899999
Q ss_pred EEEecCCC
Q 021788 282 RIDVATPK 289 (307)
Q Consensus 282 ~v~~a~~k 289 (307)
+|.|+.++
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999994
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.1e-10 Score=109.03 Aligned_cols=81 Identities=17% Similarity=0.410 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..++|||||.|+..+++.||+.+|+ .||+|.+|.++. ++|||||.+....+|.+|+.+|++..+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~fe-efGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFE-EFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHH-hcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 3468999999999999999999995 999999998764 468999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021788 286 ATPKKASG 293 (307)
Q Consensus 286 a~~k~~~~ 293 (307)
+..+.-+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99986554
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=1.8e-10 Score=75.07 Aligned_cols=56 Identities=32% Similarity=0.660 Sum_probs=49.0
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 132 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|++.|+|..+ .++.+++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999998755 47999999999999999999999999 6677888774
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=2.7e-10 Score=90.88 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~-G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
......++|..+|.-+-+..|..+|. .| |.|.++++-+++.||.++|||||+|++.+.|..|-+.||+..|.++.|.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~-q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFR-QFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhh-hcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44556899999999999999999997 66 77888888899999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 021788 284 DVATPK 289 (307)
Q Consensus 284 ~~a~~k 289 (307)
+|-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998776
No 118
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=8.4e-11 Score=97.04 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.|.|||..||.+..+.||..+|..||.|++.++..|+.|+.+|.|+||.|.++.+|..||..+||..|+-+.++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999986555555
Q ss_pred EEE
Q 021788 190 RLN 192 (307)
Q Consensus 190 ~~~ 192 (307)
.+.
T Consensus 360 QLK 362 (371)
T KOG0146|consen 360 QLK 362 (371)
T ss_pred hhc
Confidence 443
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=4.5e-10 Score=97.15 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=119.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...++..|..++|||..++.+|..+|...-.....+.+.....|+..|++.|.|.|.|.-+.|++.... .+ ..+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkh-h~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKH-HM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhh-hc--cCCcee
Confidence 345666789999999999999999998765444445555455678889999999999999999986433 33 334444
Q ss_pred EEeccCCC-----------CCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhh---CCCeeEEEEEecCCCCCcccEEEE
Q 021788 191 LNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK---YPSVKGAKVIIDSNTGRTKGYGFV 256 (307)
Q Consensus 191 ~~~a~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~---~G~v~~i~i~~d~~~~~~~g~afV 256 (307)
+-.+...+ ...-.....-..|.+++||+++|+.|+.+||... -|.++.|.+++.+ .|+..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEE
Confidence 43332211 1111112234568899999999999999999421 2345666666654 4899999999
Q ss_pred EeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 257 ~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.|..+++|..|+. -|...|+-|+|.+-.+
T Consensus 212 lfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 212 LFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred EecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 9999999999984 4445566666665443
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=4.6e-10 Score=89.59 Aligned_cols=80 Identities=28% Similarity=0.415 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
......++|+.+|..+.+.++..+|..+ |.|..+++.+++.||.++|||||+|++.+.|.-|-+.||+..|.+.-+.++
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455679999999999999999999998 788888888999999999999999999999999999999999954444444
Q ss_pred E
Q 021788 191 L 191 (307)
Q Consensus 191 ~ 191 (307)
+
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 3
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.5e-10 Score=97.79 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
.++.++|||.-|.+-+|+++|.-+|+.||.|.+|.|++|..||.+..||||+|++.++++.|.-.|.+..| ..+.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999 5666777
Q ss_pred Eecc
Q 021788 192 NWAT 195 (307)
Q Consensus 192 ~~a~ 195 (307)
+|+.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 7665
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.5e-10 Score=109.76 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=135.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....+++||+|||+..+++.+|+..|..+|.|.+|.|-.-+ -+.-.-|+||.|.+...+-.|+..+.+..|......+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 345678899999999999999999999999999999886543 3445568999999999999999999998885544333
Q ss_pred EEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
. +... .....+.+++++|..++...-|...|. .||.|..|.+-. ..-||+|.|++...|..|+.
T Consensus 446 g--lG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd-~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 G--LGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFD-RFGPIRIIDYRH------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred c--cccc-------ccccceeeccCCCCCCChHHHHHHHhh-ccCcceeeeccc------CCcceeeecccCccchhhHH
Confidence 3 3221 244677899999999999999999996 999999877532 23489999999999999999
Q ss_pred HhcCceecC--eeEEEEecCCCCC
Q 021788 270 EMNGVYCSS--RPMRIDVATPKKA 291 (307)
Q Consensus 270 ~l~g~~i~g--~~i~v~~a~~k~~ 291 (307)
.|-|..|++ +.|+|.|+.+..+
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 999999984 7799999887543
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.95 E-value=1.4e-08 Score=94.14 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=65.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
++|-+.|+|++++-+||.+||. -|-.+..-.+++-.+.|...|.|.|-|++.++|.+|...|+++.|..|+|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~-dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFN-DYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhc-ccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3799999999999999999997 777665433444445699999999999999999999999999999999999875
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.5e-09 Score=98.40 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=114.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|+|-|||.++++++|+.+|+.||+|++|+....+ +|.+||+|.|..+|++|++.|++..+.+..+.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k-- 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK-- 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc--
Confidence 45678899999999999999999999999999997665443 47999999999999999999999988554433
Q ss_pred EEeccCCCC-----------------CCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccE
Q 021788 191 LNWATFSGS-----------------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253 (307)
Q Consensus 191 ~~~a~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~ 253 (307)
......... ...........++ +.|.+..+..-++..+. .+|.+.. +. ++.-.--
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchh-ccCcccc-cc-----ccchhhh
Confidence 111110000 0001111122333 34888888877777775 7887766 32 2222225
Q ss_pred EEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 254 afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
-+++|.+..++..+.... |+.+.+....+.++.+-
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCCC
Confidence 688999999997776533 78888888888888874
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.92 E-value=5.4e-09 Score=87.48 Aligned_cols=85 Identities=29% Similarity=0.471 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
....+|.|.|||+.|+++||+++|. .||.++.+-|-.|+ +|++.|.|-|.|...++|.+|+..+||+.++|+.|++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3447899999999999999999996 99999999999985 599999999999999999999999999999999999998
Q ss_pred cCCCCCC
Q 021788 286 ATPKKAS 292 (307)
Q Consensus 286 a~~k~~~ 292 (307)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 8765433
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=6.2e-09 Score=94.44 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.+.|||.+|...+...||+.+|+ +||.|+-.+|+.+..+--.++|+||++.+.++|.+||..||..++.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46899999999999999999997 99999999999887666678999999999999999999999999999999999988
Q ss_pred CC
Q 021788 288 PK 289 (307)
Q Consensus 288 ~k 289 (307)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 65
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=94.62 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=130.2
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 103 QNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 103 ~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
..+.....-..+.+.+-+.+.+++.++.+++++|-.. .|....|..+...+...|.++|+|....++.+|+..-+...
T Consensus 299 ~sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~- 376 (944)
T KOG4307|consen 299 YSGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDD- 376 (944)
T ss_pred CCCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhh-
Confidence 3333334445678889999999999999999998653 34555555555445557999999999999999987533322
Q ss_pred CCCCCceEEEeccCC------------C----------------------CCCcccCCCCCeEEEcCCCCCCCHHHHHHH
Q 021788 183 PNTDQPFRLNWATFS------------G----------------------SDRRTEACSDLSIFVGDLAPDVTDSILQET 228 (307)
Q Consensus 183 ~~~~~~v~~~~a~~~------------~----------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 228 (307)
..+.+.+.-.... . ...........+|||..||..+++.++.++
T Consensus 377 --~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~ 454 (944)
T KOG4307|consen 377 --VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNK 454 (944)
T ss_pred --hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhh
Confidence 2333333222100 0 000122234578999999999999999999
Q ss_pred HhhhCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 229 FSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 229 F~~~~G~v~~-i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
|. ..-.|++ |+|...+ +++.++.|||+|...+++.+|...-+.++++.|.|+|+-...+
T Consensus 455 f~-~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 455 FM-GAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hh-hhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 97 6666776 6666664 4788899999999999999998777888899999999876543
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=87.20 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||++|-..++|.+|++.|.+||+|+++.++... ++|||+|.+.++|+.|...+... +...+..|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNK-LVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcce-eeecceEEE
Confidence 34456789999999999999999999999999999998765 59999999999999999876653 333677888
Q ss_pred EEeccC
Q 021788 191 LNWATF 196 (307)
Q Consensus 191 ~~~a~~ 196 (307)
+.|+..
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 889887
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=4e-08 Score=70.63 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC--CCCceEE
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN--TDQPFRL 191 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~--~~~~v~~ 191 (307)
+||+|+|||...|.++|.+++... |...-+.+..|..++...|||||.|.+++.|.+..+.++|..+.. +...+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998863 566667888898899999999999999999999999999999863 3455666
Q ss_pred Eecc
Q 021788 192 NWAT 195 (307)
Q Consensus 192 ~~a~ 195 (307)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=4.1e-08 Score=70.57 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec----CeeEEE
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~-G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~----g~~i~v 283 (307)
+||.|+|||...|.++|.+++.+.+ |...-+.+..|..++...|||||.|.+.++|.+-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999996433 44556788899889999999999999999999999999998764 567788
Q ss_pred EecCCC
Q 021788 284 DVATPK 289 (307)
Q Consensus 284 ~~a~~k 289 (307)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=3.8e-08 Score=79.56 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHhcCceec---CeeE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d-~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~---g~~i 281 (307)
..-++|||.+||.++...+|..+|. .|...+...|... +.....+-+|||.|.+..+|.+|+..|||..|+ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4568999999999999999999996 8888887766543 222344579999999999999999999999996 7899
Q ss_pred EEEecCCCCCCC
Q 021788 282 RIDVATPKKASG 293 (307)
Q Consensus 282 ~v~~a~~k~~~~ 293 (307)
+|.+++.....+
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 999998764333
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=6.3e-09 Score=94.43 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
+.+.++|+|-|||.+|++++|..+|+ .||+|..|+ .+...+|.+||+|.|+.+|++|+++|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir-----~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIR-----ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhh-----cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 56778999999999999999999996 999999976 4455678999999999999999999999999999998
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=2.4e-08 Score=83.60 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
....+|+|.||++.+++++|++||..||.+..+.+..++ +|++.|.|-|.|...++|..|++.++|..+++.. +++.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~--mk~~ 157 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP--MKIE 157 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCce--eeeE
Confidence 344679999999999999999999999999999898888 8999999999999999999999999998785544 5554
Q ss_pred ecc
Q 021788 193 WAT 195 (307)
Q Consensus 193 ~a~ 195 (307)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 443
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.79 E-value=7.8e-09 Score=85.05 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
.++.-+||+|.|..+++++.|...|.+|-....-++++|+.||+++||+||.|.+++++.+|++.++|..++ .+++++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchhHh
Confidence 345568999999999999999999999999999999999999999999999999999999999999999994 444444
Q ss_pred E
Q 021788 192 N 192 (307)
Q Consensus 192 ~ 192 (307)
.
T Consensus 265 R 265 (290)
T KOG0226|consen 265 R 265 (290)
T ss_pred h
Confidence 3
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=1e-08 Score=86.03 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=77.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+...+||+|+.+.+|.+++..+|. .||.|..+.|..|+..++++||+||+|.+.+.+..++. ||+..|.|+.|.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFE-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheee-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345677999999999999999999995 99999999999999999999999999999999999996 9999999999999
Q ss_pred EecCCC
Q 021788 284 DVATPK 289 (307)
Q Consensus 284 ~~a~~k 289 (307)
.+.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987754
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=5.3e-08 Score=88.51 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..-.+.|||++|...+...+|+.||++||.|+..+|+.+..+--.+.|+||++.+.++|.+||..|+.+.| .++.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 44567899999999999999999999999999999999877777889999999999999999999999999 6777888
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
..++....
T Consensus 480 EkaKNEp~ 487 (940)
T KOG4661|consen 480 EKAKNEPG 487 (940)
T ss_pred eecccCcc
Confidence 77765443
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.74 E-value=3.8e-08 Score=84.46 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~--------i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
.-++.|||.|||.++|.+++.++|+ +||.|.+ |+|.++.. |..+|-|++.|...++..-|+..|++..|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456799999999999999999997 9998864 78888855 999999999999999999999999999999
Q ss_pred CeeEEEEecC
Q 021788 278 SRPMRIDVAT 287 (307)
Q Consensus 278 g~~i~v~~a~ 287 (307)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999886
No 138
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=3.7e-08 Score=80.73 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=65.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
..+||++||+.+.+.||.++|. .||.+.++.+. .||+||+|++..+|..|+..||++.|.|-.+.|.|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFK-GYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHh-hccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999999999999996 99999998764 25899999999999999999999999988899999996
Q ss_pred C
Q 021788 289 K 289 (307)
Q Consensus 289 k 289 (307)
+
T Consensus 73 ~ 73 (216)
T KOG0106|consen 73 K 73 (216)
T ss_pred c
Confidence 4
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=5e-09 Score=91.85 Aligned_cols=151 Identities=17% Similarity=0.315 Sum_probs=116.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
..+|++||.+.++.++|..+|.....- ..-.+++ .||+||++.+...|.+|++.++|..- ..+..+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccch
Confidence 468999999999999999999865321 1222222 27999999999999999999998652 23444444443
Q ss_pred cCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
-.. ...++.+-|.|+|....++.|..++. .||.|+.|... .|.++ -..-|+|.+.+.+.-||..|+|
T Consensus 74 v~k-------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 74 VPK-------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred hhH-------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 222 22456799999999999999999997 99999998753 33332 2345889999999999999999
Q ss_pred ceecCeeEEEEec
Q 021788 274 VYCSSRPMRIDVA 286 (307)
Q Consensus 274 ~~i~g~~i~v~~a 286 (307)
..+....+++.|-
T Consensus 142 ~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 142 PQLENQHLKVGYI 154 (584)
T ss_pred hHhhhhhhhcccC
Confidence 9999999999885
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.4e-08 Score=80.48 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|+...++|+.|.++|. ..|.|..|.|..++. +..+ ||||+|+++-+..-|+..+||..+.++.|.|.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 457999999999999999999997 899999999998866 5556 9999999999999999999999999998888774
Q ss_pred C
Q 021788 287 T 287 (307)
Q Consensus 287 ~ 287 (307)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.56 E-value=1.8e-07 Score=87.19 Aligned_cols=84 Identities=27% Similarity=0.576 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
...++.|||+||+++++++.|..-|..||+|.+++|+.-+. ..+.+.|+||-|-+..+|++|++.|+|..+ ...+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 45677899999999999999999999999999999987442 234567999999999999999999999998 7788
Q ss_pred eEEEeccCC
Q 021788 189 FRLNWATFS 197 (307)
Q Consensus 189 v~~~~a~~~ 197 (307)
+++.|++..
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 899998643
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=2e-07 Score=84.33 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.+|||+|||.+++.++|+++|. .||.|+...|..-.-.+...+||||+|++.+++..||.+- -..|+++.|.|+-.++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk-~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFK-QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHh-hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 4599999999999999999996 9999999888765422344489999999999999999554 7788999999998777
Q ss_pred CC
Q 021788 289 KK 290 (307)
Q Consensus 289 k~ 290 (307)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 53
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=4e-07 Score=82.44 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.......+|||+|||.++++++|+++|..||+|+...|......++..+||||+|++.+++..|+..- .+...++.+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl 359 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKL 359 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeE
Confidence 34445556999999999999999999999999999888764434455589999999999999999864 333355555
Q ss_pred EEEecc
Q 021788 190 RLNWAT 195 (307)
Q Consensus 190 ~~~~a~ 195 (307)
.|.-..
T Consensus 360 ~Veek~ 365 (419)
T KOG0116|consen 360 NVEEKR 365 (419)
T ss_pred EEEecc
Confidence 555433
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=78.92 Aligned_cols=81 Identities=22% Similarity=0.462 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|+.+|.+|||+||+|.+.+.+..++. |+|..+.+ ..+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~--~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG--PAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc--ccce
Confidence 34567899999999999999999999999999999999999999999999999999999999999 99999954 4444
Q ss_pred EEec
Q 021788 191 LNWA 194 (307)
Q Consensus 191 ~~~a 194 (307)
+.+.
T Consensus 174 vt~~ 177 (231)
T KOG4209|consen 174 VTLK 177 (231)
T ss_pred eeee
Confidence 4443
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.48 E-value=1.7e-07 Score=81.16 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~--------~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
....+|||-+|+..+++++|.++|. .+|.|. .|+|.+|++|+.++|-|.|.|+|...|..|+..++++.|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4556899999999999999999997 999886 3788999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCCCCc
Q 021788 278 SRPMRIDVATPKKASGY 294 (307)
Q Consensus 278 g~~i~v~~a~~k~~~~~ 294 (307)
+..|+|.+++.+..-++
T Consensus 143 gn~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVES 159 (351)
T ss_pred CCCchhhhhhhccCccc
Confidence 99999999998875444
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=4.3e-07 Score=84.73 Aligned_cols=82 Identities=23% Similarity=0.512 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
+...+.|||+||+..++++.|-..|. .||.|..++|+..+ +..+.+-|+||-|.+..+|.+|+..|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45568899999999999999999997 99999999998654 234566799999999999999999999999999999
Q ss_pred EEEecC
Q 021788 282 RIDVAT 287 (307)
Q Consensus 282 ~v~~a~ 287 (307)
++-|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999985
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.30 E-value=2.1e-07 Score=81.06 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=115.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..|.|.||.+.+|.+.+..||.-.|.|.++.++....+ ......|||.|.|...+..|-...|..+++ .. .|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd-ra-liv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD-RA-LIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee-ee-EEEEe
Confidence 38999999999999999999999999999999874322 223468999999999998888755544442 22 22222
Q ss_pred eccCCCCCC----------------c------------c----------------------cCCCCCeEEEcCCCCCCCH
Q 021788 193 WATFSGSDR----------------R------------T----------------------EACSDLSIFVGDLAPDVTD 222 (307)
Q Consensus 193 ~a~~~~~~~----------------~------------~----------------------~~~~~~~l~v~nlp~~~t~ 222 (307)
+........ . . -..-.++++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 221000000 0 0 0001257999999999999
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
.++.+.|. .+|+|.+..+.- +...-+|.|+|..-.+...|+ .++|.++.-...++..-+|.
T Consensus 166 ~e~~e~f~-r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 166 PESGESFE-RKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhh-hcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 99999995 999999887643 333457889999988888887 56777666444444444454
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=7e-06 Score=56.37 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 209 LSIFVGDLAPDVTDSILQ----ETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~----~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
..|+|.|||.+.....|+ .++ +.+|. |..|. .+.|+|+|.+.+.|.+|...|+|..+-|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLs-dNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLS-DNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHH-HTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh-hccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 368999999998876664 455 36664 44442 246999999999999999999999999999999
Q ss_pred EecCCC
Q 021788 284 DVATPK 289 (307)
Q Consensus 284 ~~a~~k 289 (307)
+|....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 997543
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.23 E-value=2.7e-06 Score=62.64 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=44.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc-----CceecCeeEEE
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-----GVYCSSRPMRI 283 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~-----g~~i~g~~i~v 283 (307)
+.|+|.+++..++.++|++.|+ .||.|..|.+.+... .|+|+|.+.++|.+|+..+. +..|.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 5789999999999999999996 899999998876432 69999999999999998774 34566777766
Q ss_pred EecC
Q 021788 284 DVAT 287 (307)
Q Consensus 284 ~~a~ 287 (307)
+.-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 6543
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=1.8e-07 Score=88.94 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=113.4
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..+.+.+.++.+..... .++..|..+|.|+.|++......-....+.++.+....+++.|... .+.-+. .+...+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a--~~~~av~ 646 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALA--NRSAAVG 646 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccC--CccccCC
Confidence 34456778887776655 6788899999999998876321112223788999999999999874 454453 3333333
Q ss_pred eccCCCCCCcccC-----CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 193 WATFSGSDRRTEA-----CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 193 ~a~~~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
.+........... ...+++||.||+..+.++||...|. .+|.+..+.|....+.++.+|+|+|+|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 3333332222111 2346899999999999999999997 999998887776666789999999999999999999
Q ss_pred HHHhcCcee
Q 021788 268 MTEMNGVYC 276 (307)
Q Consensus 268 ~~~l~g~~i 276 (307)
+...++..+
T Consensus 726 V~f~d~~~~ 734 (881)
T KOG0128|consen 726 VAFRDSCFF 734 (881)
T ss_pred hhhhhhhhh
Confidence 855444333
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.12 E-value=5.3e-06 Score=73.44 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=58.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEec---CCCCC----------cccEEEEEeCCHHHHHHHHHHhc
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID---SNTGR----------TKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d---~~~~~----------~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
-++++|.+.|||.+-..+.|.++|+ .+|.|+.|+|.+. ++..+ .+-||+|+|+..+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4789999999999999999999997 9999999999877 33221 25689999999999999998886
Q ss_pred Cc
Q 021788 273 GV 274 (307)
Q Consensus 273 g~ 274 (307)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 53
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=6.9e-06 Score=70.51 Aligned_cols=85 Identities=20% Similarity=0.418 Sum_probs=66.4
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHhhhCCCeeEEEEEecCCC-CCcccEE--EEEeCCHHHHHHHHHHhcCceecCe
Q 021788 209 LSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNT-GRTKGYG--FVRFGDENERSRAMTEMNGVYCSSR 279 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l------~~~F~~~~G~v~~i~i~~d~~~-~~~~g~a--fV~F~~~~~A~~A~~~l~g~~i~g~ 279 (307)
+-+||-+|+..+..|++ .++|. .||.|..|.|-+.... ....+++ ||+|.+.++|.+||...+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45888899998888773 47896 9999998877654311 1222333 9999999999999999999999999
Q ss_pred eEEEEecCCCCCCCc
Q 021788 280 PMRIDVATPKKASGY 294 (307)
Q Consensus 280 ~i~v~~a~~k~~~~~ 294 (307)
.|+..|.+.|-=..|
T Consensus 194 ~lkatYGTTKYCtsY 208 (480)
T COG5175 194 VLKATYGTTKYCTSY 208 (480)
T ss_pred eEeeecCchHHHHHH
Confidence 999999887644333
No 153
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.10 E-value=1e-05 Score=67.06 Aligned_cols=90 Identities=18% Similarity=0.398 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC
Q 021788 168 AAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (307)
Q Consensus 168 ~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~ 247 (307)
.-|+.|...|.+... .++.+++.|+. . ..|+|.||...++.+.|.+.|+ .||.|+...+..| +.
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~-----------~-a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAM-----------H-AELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeec-----------c-ceEEEEecchhhhhHHHHHhhh-hcCccchheeeec-cc
Confidence 457788888999998 67788888875 2 5799999999999999999996 9999999888888 45
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 248 GRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 248 ~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
++..+-++|+|...-.|.+|++.++.
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhcc
Confidence 88889999999999999999999853
No 154
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=1.7e-05 Score=66.89 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 222 DSILQETFSSKYPSVKGAKVIIDSNTGRT-KGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 222 ~~~l~~~F~~~~G~v~~i~i~~d~~~~~~-~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
++++++.+ ++||.|.+|.|+.++..-.. .--.||+|+..++|.+|+-.|||++|+||.++..|-.
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46778888 49999999998877543222 2347999999999999999999999999999988743
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.01 E-value=5.5e-06 Score=71.40 Aligned_cols=71 Identities=23% Similarity=0.449 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
..+|||||-|++|++||.+.+...| .+.+++++.++.+|.+||||+|...+..++...++.|-.+.+.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3689999999999999999998877 6888999999999999999999999999999999988888775543
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=69.69 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
.....+|||-+|+..+++++|.++|..||.|. .|+|.+|++|++.|+-|.|.|.|...|..|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999999775 4778889999999999999999999999999999999995
Q ss_pred CCCCceEEEeccCC
Q 021788 184 NTDQPFRLNWATFS 197 (307)
Q Consensus 184 ~~~~~v~~~~a~~~ 197 (307)
+ .+++|.++...
T Consensus 143 g--n~ikvs~a~~r 154 (351)
T KOG1995|consen 143 G--NTIKVSLAERR 154 (351)
T ss_pred C--CCchhhhhhhc
Confidence 5 66777666543
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.5e-05 Score=71.51 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ce
Q 021788 207 SDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SR 279 (307)
Q Consensus 207 ~~~~l~v~nlp~~~------t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~ 279 (307)
-..+|+|.|+|--- -...|.++|+ ++|.+....+..+.++| .+||.|++|++..+|..|+..|||+.|+ .+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44678899987532 2245568896 99999999999997755 8999999999999999999999999986 77
Q ss_pred eEEEEe
Q 021788 280 PMRIDV 285 (307)
Q Consensus 280 ~i~v~~ 285 (307)
++.|+.
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 887764
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.86 E-value=0.00012 Score=50.40 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 116 KTIWIGDLFHWMDETFL----HNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l----~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..|+|.|||.+.+...| +.|+.-|| .|.+| . .+.|+|.|.+.+.|++|.+.|+|..+ .+..+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 36999999999887754 55566676 56555 1 14799999999999999999999999 455566
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
+.|..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 66653
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=4.8e-05 Score=55.97 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=39.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 180 (307)
+.|+|.++...++-++|+++|+.||.|.-|.+..... .|||.|.+.++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999998888876542 6999999999999999877554
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.80 E-value=2.1e-05 Score=65.27 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCcCc----eEEEEeCCHHHHHHHHHHhCCCC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT--------GQSEG----YGFVEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~~g----~afV~f~~~~~a~~a~~~l~g~~ 181 (307)
.+-+||+++||+.+....||++|+.||.|-.|.+-....+ |..++ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999999999876544 33332 37899999999999999999999
Q ss_pred CCCCC
Q 021788 182 MPNTD 186 (307)
Q Consensus 182 ~~~~~ 186 (307)
|+|..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 97654
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.78 E-value=1.4e-05 Score=66.34 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC------------CCcccEEEEEeCCHHHHHHHHHHhcCc
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT------------GRTKGYGFVRFGDENERSRAMTEMNGV 274 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~------------~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (307)
...+||+++||+.....-|+++|+ .||.|-+|.+-....+ +....-|+|+|.+...|..+...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999997 9999999988765433 222245789999999999999999999
Q ss_pred eecCee
Q 021788 275 YCSSRP 280 (307)
Q Consensus 275 ~i~g~~ 280 (307)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999864
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.73 E-value=2.9e-05 Score=68.84 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCC--CCc--------CceEEEEeCCHHHHHHHHHHhCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQT--GQS--------EGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~---~~~--g~~--------~g~afV~f~~~~~a~~a~~~l~g 179 (307)
...++|.+.|||.+-..+.|.++|..+|.|..|+|+.- ..+ +.. +-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47889999999999999999999999999999999875 222 222 35799999999999999998876
Q ss_pred CCCCCCCCceEEE
Q 021788 180 SLMPNTDQPFRLN 192 (307)
Q Consensus 180 ~~~~~~~~~v~~~ 192 (307)
...+..++.+++-
T Consensus 309 e~~wr~glkvkLl 321 (484)
T KOG1855|consen 309 EQNWRMGLKVKLL 321 (484)
T ss_pred hhhhhhcchhhhh
Confidence 6555555555543
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.72 E-value=1.7e-05 Score=65.99 Aligned_cols=64 Identities=17% Similarity=0.373 Sum_probs=54.3
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
+||..+|.++||+|+.+.|-.+.. -.-+|-++|.|...++|.+|+..|||.+|.|++|.+.++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 566667756999999987766532 4567889999999999999999999999999999999864
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.00013 Score=46.56 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHH
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 174 (307)
+.|-|.+.+.+..+ .++..|..||+|.++.+-.+. .+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56888999887765 455588899999998877333 38999999999999985
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.65 E-value=3.8e-05 Score=70.75 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee---cCeeE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i---~g~~i 281 (307)
...+++|||.||-..+|.-.|+.++....|.|+..||-+ -+.+|||.|.+.++|.+.+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 456789999999999999999999976788888875432 345899999999999999999999775 57899
Q ss_pred EEEecCC
Q 021788 282 RIDVATP 288 (307)
Q Consensus 282 ~v~~a~~ 288 (307)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999874
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.65 E-value=0.00013 Score=46.53 Aligned_cols=52 Identities=17% Similarity=0.436 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (307)
+.|.|.+.+.+..+..| ++|. .||+|.++.+.... -+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~-~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFA-SFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHH-hcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 57889999887776555 5775 79999998876322 37999999999999985
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.62 E-value=5.5e-05 Score=65.41 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRI 283 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G--~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~i~v 283 (307)
...++|||||-|.+|++||.+.+. .-| .+.+++++.++.+|.++|||+|-..+..+..+.++.|-.++|.|. .+.+
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 445799999999999999999885 455 356778888999999999999999999999999999999999875 4444
Q ss_pred Ee
Q 021788 284 DV 285 (307)
Q Consensus 284 ~~ 285 (307)
.|
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 44
No 168
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.60 E-value=5.4e-05 Score=65.88 Aligned_cols=82 Identities=21% Similarity=0.444 Sum_probs=70.7
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 113 DETKTIW-IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~-v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++| |++|++.+++++|+..|..+|.|..+++..+..++.++|++||.|.+...+..++.. ....+ .++++.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCccccc
Confidence 3444555 999999999999999999999999999999999999999999999999999999886 66666 6677777
Q ss_pred EeccCC
Q 021788 192 NWATFS 197 (307)
Q Consensus 192 ~~a~~~ 197 (307)
.+..+.
T Consensus 259 ~~~~~~ 264 (285)
T KOG4210|consen 259 EEDEPR 264 (285)
T ss_pred ccCCCC
Confidence 776654
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00026 Score=51.32 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEE-EEecC------CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~-i~~d~------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 279 (307)
..+.|.|-+.|...+ ..|.++|+ .||+|.+.. +.++. .......+..|+|++..+|.+|| ..||..|+|.
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CCeEEEEEccCHHHH-HHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 456789999999855 45667785 999998764 11110 00112347899999999999999 8899999874
Q ss_pred -eEEEEecCC
Q 021788 280 -PMRIDVATP 288 (307)
Q Consensus 280 -~i~v~~a~~ 288 (307)
.|-|.+.++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 666888643
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00013 Score=67.03 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=60.4
Q ss_pred CCCCeEEEcCCCCCCC--HH----HHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 113 DETKTIWIGDLFHWMD--ET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t--~~----~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
.....|+|-|+|---. -+ -|.++|+++|+|+.+.+..+.. |.++||.|++|.+..+|..|++.|+|..++ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-kn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD-KN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec-cc
Confidence 3456789999985222 22 3557799999999999998885 459999999999999999999999999886 33
Q ss_pred CceEE
Q 021788 187 QPFRL 191 (307)
Q Consensus 187 ~~v~~ 191 (307)
.++.+
T Consensus 134 Htf~v 138 (698)
T KOG2314|consen 134 HTFFV 138 (698)
T ss_pred ceEEe
Confidence 44444
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.34 E-value=0.00057 Score=59.04 Aligned_cols=111 Identities=11% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEeecCCCC-CcCce--EEEEeCCHHHHHHHHHHhCCCCCCCC
Q 021788 115 TKTIWIGDLFHWMDETFL------HNCFSHTGQVVNVKVIRNKQTG-QSEGY--GFVEFYSRAAAEKVLQSYSGSLMPNT 185 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l------~~~f~~~G~i~~~~~~~~~~~g-~~~g~--afV~f~~~~~a~~a~~~l~g~~~~~~ 185 (307)
..-+||-+|++.+.++++ .++|.+||.|..|.|.+...+- ...+. .||+|.+.++|.+||...+|..+ .
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 345799999999887762 3789999999998877643111 11222 39999999999999999999999 5
Q ss_pred CCceEEEeccCCCCC---CcccCCCCCeEEEcCC---CCCCCHHHHHH
Q 021788 186 DQPFRLNWATFSGSD---RRTEACSDLSIFVGDL---APDVTDSILQE 227 (307)
Q Consensus 186 ~~~v~~~~a~~~~~~---~~~~~~~~~~l~v~nl---p~~~t~~~l~~ 227 (307)
++.++..+...+--. +........++|+-.- -..+|.+||-.
T Consensus 192 Gr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n 239 (480)
T COG5175 192 GRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCN 239 (480)
T ss_pred CceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhh
Confidence 677887776643211 1122233345555322 12466666643
No 172
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.001 Score=60.74 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=61.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHH
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (307)
...+..+|||||+||.-++.++|..+|+ .||.|.-+-|=.|++-+..+|-|=|+|.+..+-.+||..
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4567889999999999999999999999 699999999988977899999999999999999999974
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.25 E-value=0.0013 Score=50.69 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=45.0
Q ss_pred HHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCC
Q 021788 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 224 ~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
+|.+.|+ .||+|.-+++..+ .-+|+|.+-++|.+|+ .++|..|+|+.|+|+...|--
T Consensus 52 ~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 5667885 8999998887754 3699999999999999 999999999999999987753
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.00096 Score=61.35 Aligned_cols=100 Identities=10% Similarity=0.222 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHh-hhCCCeeEEEEEec
Q 021788 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS-SKYPSVKGAKVIID 244 (307)
Q Consensus 166 ~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~~G~v~~i~i~~d 244 (307)
|++-...+|+...+..++.++..|+ .....|.|.|+.||..+-+|+++-+|+ +.+..+.+|.+..+
T Consensus 146 DvdLI~Evlresp~VqvDekgekVr-------------p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N 212 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVR-------------PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN 212 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccc-------------cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec
Confidence 3444455555555555544444444 234678899999999999999999995 34678889988766
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeEEEEe
Q 021788 245 SNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMRIDV 285 (307)
Q Consensus 245 ~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~i~v~~ 285 (307)
.. =||+|++..||..|...|.. ++|-|+.|..++
T Consensus 213 ~n-------WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 213 DN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred Cc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 33 38999999999999887754 456677665554
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.10 E-value=0.0035 Score=40.98 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhC---CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKY---PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~---G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
..+|+|.++. .++.+||+.+|. .| ....+|+.+-|. .|-|-|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3479999984 588889999997 66 246788888774 3899999999999999765
No 176
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.96 E-value=9.6e-05 Score=69.13 Aligned_cols=108 Identities=13% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+..+|||+|+...+..+-++.++..||.|.++.... |||++|.......+|+..++-..+.+.....+++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4567899999999999999999999999998886654 8999999999999999999888887777766665
Q ss_pred eccCCCCCCc-----------ccCCCCCeEEEcCCCCCCCHHHHHHHH
Q 021788 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETF 229 (307)
Q Consensus 193 ~a~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F 229 (307)
.......... ......+-++|.+++..+.+....+.|
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~ 156 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSL 156 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHH
Confidence 3221111110 001113456677777766666665555
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.96 E-value=0.00069 Score=60.25 Aligned_cols=81 Identities=23% Similarity=0.455 Sum_probs=63.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc-eecCeeEEEEecC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV-YCSSRPMRIDVAT 287 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-~i~g~~i~v~~a~ 287 (307)
+.||++||...++..||..+|.+.--.+.. .++. ..||+||.+.+...|.+|++.++|+ ++.|.++.+.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g-~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSG-QFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCc-ceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 469999999999999999999632111111 1221 1379999999999999999999995 6889999999999
Q ss_pred CCCCCCccc
Q 021788 288 PKKASGYQQ 296 (307)
Q Consensus 288 ~k~~~~~~~ 296 (307)
+|+-+.++.
T Consensus 75 ~kkqrsrk~ 83 (584)
T KOG2193|consen 75 PKKQRSRKI 83 (584)
T ss_pred hHHHHhhhh
Confidence 987665543
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.0036 Score=52.28 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=55.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
..|+|.||...++.+.|...|+.||+|..-.++-|. .++..+-++|.|...-.+.+|++...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999887777665 68888999999999999999998773
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.87 E-value=0.0077 Score=39.37 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHh
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHT---GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 177 (307)
..|+|+++. .++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999985 58889999999999 135578888886 4899999999999999764
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.86 E-value=0.0012 Score=61.25 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=64.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC-CCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-~~~~~ 188 (307)
....++.|+|.||-.-+|.-.|+.|+.. +|.|++.||=+- |..|||.|.+.++|.+.+..|+|..|+ +....
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4567789999999999999999999995 667777744332 247999999999999999999999886 45567
Q ss_pred eEEEecc
Q 021788 189 FRLNWAT 195 (307)
Q Consensus 189 v~~~~a~ 195 (307)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7777776
No 181
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.74 E-value=0.0028 Score=61.56 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....++.+++++|..++.-..|...|..||.|..|.+-... .|++|.|++...+..|++.+.|..+.+-.+.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 44567889999999999999999999999999887665433 499999999999999999999999999899999
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
++++....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99998543
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.67 E-value=0.0045 Score=44.90 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-ecC------CCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI-RNK------QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~-~~~------~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
..+-|.|-+.|.. ....|.+.|+.||.|.+..-. ++. .......+..|+|.++.+|.+||. -||..+.+ .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g-~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG-S 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT-C
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC-c
Confidence 4556888899888 566888999999999877511 100 001123589999999999999999 58888753 3
Q ss_pred CceEEEec
Q 021788 187 QPFRLNWA 194 (307)
Q Consensus 187 ~~v~~~~a 194 (307)
..+-+.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 45555554
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.58 E-value=0.026 Score=41.73 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
...+.+...|+.++.++|..+.+.--..|..++|++|.. ..+-.+++.|.+.++|..=...+||+.|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 445555566667777788766653334477889998843 45678999999999999999999998874
No 184
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.44 E-value=0.002 Score=62.19 Aligned_cols=70 Identities=26% Similarity=0.309 Sum_probs=60.6
Q ss_pred EEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--cCeeEEEEecCC
Q 021788 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATP 288 (307)
Q Consensus 212 ~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i--~g~~i~v~~a~~ 288 (307)
.+.|.+-..+...|..+|+ .||.|.++|.++|-+ +|.|+|.+++.|..|+++|+|+++ -|.+.+|.||+.
T Consensus 302 ~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCS-DYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHH-hhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3344555788899999997 999999999998865 799999999999999999999886 488999999876
No 185
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.35 E-value=0.17 Score=43.53 Aligned_cols=160 Identities=11% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC-------CCCcCceEEEEeCCHHHHHHH----HHHhCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ-------TGQSEGYGFVEFYSRAAAEKV----LQSYSG 179 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~a----~~~l~g 179 (307)
+...+|.|...||..+++-..+-.-|..||+|++|+++.+.. +........+-|-+.+.+... +..|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999999999999999998761 112234578889998876543 333333
Q ss_pred CCCCCCCCceEEEeccCCCCCC--------c-------------ccCCCCCeEEEcCCCCCCCHHHH-HH---HHhhhCC
Q 021788 180 SLMPNTDQPFRLNWATFSGSDR--------R-------------TEACSDLSIFVGDLAPDVTDSIL-QE---TFSSKYP 234 (307)
Q Consensus 180 ~~~~~~~~~v~~~~a~~~~~~~--------~-------------~~~~~~~~l~v~nlp~~~t~~~l-~~---~F~~~~G 234 (307)
..-......++++|........ . ......+.|.|. +...+.++++ .+ ++. .-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~-~~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLK-NSN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhc-cCC
Confidence 2222245556666655311110 0 122345667663 3344544443 22 221 222
Q ss_pred ----CeeEEEEEecC--CCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 235 ----SVKGAKVIIDS--NTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 235 ----~v~~i~i~~d~--~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
.+++|.|+... ...-++-||+++|-+..=|..++.-|.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 25667766422 223456799999999999999988775
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.27 E-value=0.014 Score=49.72 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCcC-ceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 129 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~-g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
++++++-+.+||.|..|.|..++.--... --.||+|...+.|.+|+-.|||+.+ .++.++.-|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeehee
Confidence 45788889999999999988875332222 2379999999999999999999999 455555444
No 187
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.22 E-value=0.0032 Score=52.67 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=47.6
Q ss_pred HHHHHHHh-hcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 130 TFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 130 ~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
++|...|+ +||+|+++.|..+. .-...|-+||.|...++|++|+..||+..+ .+.+|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecC
Confidence 34445555 89999999766543 234568899999999999999999999999 55666655544
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.17 E-value=0.0018 Score=56.22 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=66.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhhCCCeeEEEEEecCC--CC-CcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 209 LSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSN--TG-RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~---~~F~~~~G~v~~i~i~~d~~--~~-~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
+-+||-+|+..+.++++. +.|. .||.|..|.+.++.. .+ ....-++|+|...++|..||...+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 346777888777666653 5785 899999998887652 11 1123489999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
+.+..+|.-+.+
T Consensus 157 a~~gttkycs~~ 168 (327)
T KOG2068|consen 157 ASLGTTKYCSFY 168 (327)
T ss_pred HhhCCCcchhHH
Confidence 999998876655
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.03 E-value=0.043 Score=37.95 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
....+|. +|..+-..||.++|+ .||.|.--+| -| | -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFs-pfG~I~VsWi-~d--T-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFS-PFGQIYVSWI-ND--T-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCC-CCCCEEEEEE-CT--T-----EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhc-cCCcEEEEEE-cC--C-----cEEEEeecHHHHHHHHHHhc
Confidence 3456675 999999999999997 9998765443 33 2 59999999999999998886
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.02 E-value=0.04 Score=38.09 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
...+|+ .|......||.++|+.||.|. |..+.|. -|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345665 999999999999999999984 4455553 599999999999999998753
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.99 E-value=0.061 Score=41.12 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCCCCeEEEcCCCCCCC-HHHHH---HHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMD-ETFLH---NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t-~~~l~---~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
..+-.+|.|+=|..++. .+||+ ..++.||+|.+|.+.... -|.|.|+|..+|.+|+..+.... -+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~---pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRA---PGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCC---CCc
Confidence 44566888887766653 34454 447789999999776433 59999999999999999987643 356
Q ss_pred ceEEEec
Q 021788 188 PFRLNWA 194 (307)
Q Consensus 188 ~v~~~~a 194 (307)
.+.++|.
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 6677664
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.88 E-value=0.023 Score=46.16 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=46.8
Q ss_pred CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEEEEecCCCC
Q 021788 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 221 t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~i~v~~a~~k~ 290 (307)
..+.|+++|. .|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..|.|..++|.|+.+..
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999996 99999988877542 358999999999999999999 999999999999996553
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.85 E-value=0.048 Score=36.23 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.++-++++..|. .|+ ..+ |..|+ .|| ||.|.+.++|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr-~y~-~~~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYR-WDR--IRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCC-cce--EEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999996 786 443 44443 245 89999999999999999999888777654
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.79 E-value=0.12 Score=38.20 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
.+..+-+...|+.++.++|..+.+.+- .|..++|++|.. ..+-.+++.|.+.++|......+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555556666677778877766654 577888888752 35557899999999999999999999884
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.73 E-value=0.018 Score=51.06 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..|.|.||...+|.+.+..+|. ..|.|..+.|+..... ......|||.|.|...+..|- .|-++.|=++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4899999999999999999996 9999999998763221 233468999999999999886 5666666566555543
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.70 E-value=0.0073 Score=54.73 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 210 SIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 210 ~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.|-+.-++.. -|.++|...|. .||.|..|-|-... -.|+|+|.+..+|-+|. ..++..|++|.|+|.|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhh-hcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 3444444544 46689999997 99999999876542 26999999999998886 7899999999999999998
Q ss_pred CCCCC
Q 021788 289 KKASG 293 (307)
Q Consensus 289 k~~~~ 293 (307)
...++
T Consensus 446 s~~tn 450 (526)
T KOG2135|consen 446 SPVTN 450 (526)
T ss_pred CcccC
Confidence 54443
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.54 E-value=0.011 Score=57.34 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCC
Q 021788 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (307)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~ 197 (307)
.++.|.+-..+..-|..+|+.||.|.+.|.+++-+ .+.|+|.+.+.|..|++.+.|+.+..-+.+.+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34555566788899999999999999999998874 799999999999999999999999888899999999854
Q ss_pred C
Q 021788 198 G 198 (307)
Q Consensus 198 ~ 198 (307)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.43 E-value=0.011 Score=47.73 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEee---c-CCCCC-cCceEEEEeCCHHHHHHHHHHhCCCCCCC-C
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIR---N-KQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-T 185 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~---~-~~~g~-~~g~afV~f~~~~~a~~a~~~l~g~~~~~-~ 185 (307)
.....|.|++||+.+|++++.+.++. ++....+..+. . ...+. ...-|||.|.+.+++......++|..+.. .
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 66653322222 1 11111 22469999999999999999999976532 2
Q ss_pred C--CceEEEeccC
Q 021788 186 D--QPFRLNWATF 196 (307)
Q Consensus 186 ~--~~v~~~~a~~ 196 (307)
+ ....|.++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3345555554
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.11 Score=48.56 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHW-MDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
...+++|-|-||.|+ +...+|..+|+.| |.|.+|.|.... |.. .+.+-+..+|-++.+..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGk---eRM~eEeV~GP~~el~~ 235 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGK---ERMKEEEVHGPPKELFK 235 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhH---HHhhhhcccCChhhhcc
Confidence 467889999999996 6788999888876 477788776643 111 12222223332221100
Q ss_pred CceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 187 ~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
........ . ..+..-++-.++.+. .|+ +.+++ .-||+|+|++.+.|.+
T Consensus 236 ---------~~e~~~~s-----~------sD~ee~~~~~~~kLR-~Yq-~~rLk----------YYyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 236 ---------PVEEYKES-----E------SDDEEEEDVDREKLR-QYQ-LNRLK----------YYYAVVECDSIETAKA 283 (650)
T ss_pred ---------ccccCccc-----c------cchhhhhhHHHHHHH-HHH-hhhhe----------eEEEEEEecCchHHHH
Confidence 00000000 0 111111122234442 443 33322 2389999999999999
Q ss_pred HHHHhcCceec--CeeEEEEec
Q 021788 267 AMTEMNGVYCS--SRPMRIDVA 286 (307)
Q Consensus 267 A~~~l~g~~i~--g~~i~v~~a 286 (307)
+...|+|.+|. +..|.++|.
T Consensus 284 vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHhcCcceeccccceeeeeec
Confidence 99999999986 677777774
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.39 E-value=0.049 Score=41.63 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=55.4
Q ss_pred cCCCCCeEEEcCCCCCC-CHHHH---HHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 021788 204 EACSDLSIFVGDLAPDV-TDSIL---QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~-t~~~l---~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 279 (307)
.+.+-.+|.|+=|..++ ..+|| ...++ .||.|.+|.+. | +--|+|.|+|..+|-+|+.++.. ...|.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 34566788887666553 23444 45565 89999998764 2 23599999999999999999886 56788
Q ss_pred eEEEEecC
Q 021788 280 PMRIDVAT 287 (307)
Q Consensus 280 ~i~v~~a~ 287 (307)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 89988843
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.38 E-value=0.018 Score=46.58 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhh-CCCe---eEEEEEecC-CCC-CcccEEEEEeCCHHHHHHHHHHhcCceec---
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDS-NTG-RTKGYGFVRFGDENERSRAMTEMNGVYCS--- 277 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~-~G~v---~~i~i~~d~-~~~-~~~g~afV~F~~~~~A~~A~~~l~g~~i~--- 277 (307)
...+|.|++||+.+|++++.+.++ . ++.. ..+.-.... ... ....-|+|.|.+.+++..-+..++|..|-
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 446899999999999999998775 4 5555 233311211 111 22356999999999999999999997763
Q ss_pred C--eeEEEEecC
Q 021788 278 S--RPMRIDVAT 287 (307)
Q Consensus 278 g--~~i~v~~a~ 287 (307)
| ..-.|.||-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 1 345566654
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.29 E-value=0.088 Score=47.71 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
.++.|+|-.+|..+|..||..|+....-.|.+++|++|.. ..+-.++|.|.+-++|..-...+||+.|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3788999999999999999999974455688999999754 33557999999999999999999998874
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.21 E-value=0.056 Score=50.15 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
.....|.|.|+.||..+-.|+++.||+. |-++.+|.+-.+.+ =||+|++..+|..|.+.|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHH
Confidence 3456678999999999999999999986 77888998876553 4899999999999987664
No 204
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.20 E-value=0.059 Score=41.64 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCCC
Q 021788 131 FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG 198 (307)
Q Consensus 131 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~ 198 (307)
+|.+.|..||++.-++++.+ .-+|+|.+...|.+|+. ++|..+ .++.+++....+.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v--~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV--NGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE--TTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE--CCEEEEEEeCCccH
Confidence 56677888999888877765 37999999999999998 799988 55666665554443
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.50 E-value=0.052 Score=38.27 Aligned_cols=70 Identities=11% Similarity=0.256 Sum_probs=44.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCC--CCCCceEEEeccCCCCCC--cccCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 021788 160 GFVEFYSRAAAEKVLQSYSGSLMP--NTDQPFRLNWATFSGSDR--RTEACSDLSIFVGDLAPDVTDSILQETFS 230 (307)
Q Consensus 160 afV~f~~~~~a~~a~~~l~g~~~~--~~~~~v~~~~a~~~~~~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (307)
|+|+|.+..-|.+.++. ....+. .....+++..-....... -......++|.|.|||....+++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999974 222222 222333333222111111 13345678899999999999999998873
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.49 E-value=0.22 Score=45.29 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
.+.|.|-.+|..+|..||-.|+..+- .|.++++++|.. ..+-.++|.|.+.++|......+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988754 789999999642 233468999999999999999999998843
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.28 E-value=0.2 Score=34.16 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhhhCCC-----eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 218 PDVTDSILQETFSSKYPS-----VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~-----v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++..+|..+|. .-+. |-+|+|..+ |+||+-... .|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAIC-NEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHH-TCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHH-hccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3588999999997 4444 445666533 788887655 778889999999999999999865
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=0.23 Score=42.82 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=52.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEEEEe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRIDV 285 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~i~v~~ 285 (307)
....|.|.+++..-+.-.| .+|+ +||+|.+..... +| -+-.|+|.++-+|.+|| ..||+.|+|. .|-|+.
T Consensus 196 ~D~WVTVfGFppg~~s~vL-~~F~-~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQVSIVL-NLFS-RCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ccceEEEeccCccchhHHH-HHHH-hhCeeeeeecCC---CC---ceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 3568999999887665544 6674 999998865432 22 37899999999999999 7889998865 455655
No 209
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.77 E-value=0.031 Score=48.77 Aligned_cols=80 Identities=8% Similarity=0.185 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC--CCCc-CceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 116 KTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQ--TGQS-EGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~--~g~~-~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
+-+||-+|+..+.++++. ++|..||.|..|.+.++.. .+.. ..-++|+|...++|..||...+|..+.+.. +
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~--l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA--L 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh--h
Confidence 457888888777655443 5688999999998888662 1111 112899999999999999999999885443 6
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 65555433
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.20 E-value=0.092 Score=47.87 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWM-DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
...+.+.|-+.-+|+.+ +-.+|...|..||.|.+|.+-... -.|.|+|.+..+|-+|.. ..+..| .++.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avl--nnr~i 438 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVL--NNRFI 438 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-ccccee--cCcee
Confidence 34566777787778766 456899999999999999886653 259999999999987776 577777 67888
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
++.|..+..
T Consensus 439 Kl~whnps~ 447 (526)
T KOG2135|consen 439 KLFWHNPSP 447 (526)
T ss_pred EEEEecCCc
Confidence 888887654
No 211
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.20 E-value=0.26 Score=41.88 Aligned_cols=130 Identities=15% Similarity=0.306 Sum_probs=72.3
Q ss_pred eEEEEeCC----HHHHHHHHHHhCCCCCCCCC--CceEEEeccCCCCC-----------------CcccCCCCCeEEEcC
Q 021788 159 YGFVEFYS----RAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSD-----------------RRTEACSDLSIFVGD 215 (307)
Q Consensus 159 ~afV~f~~----~~~a~~a~~~l~g~~~~~~~--~~v~~~~a~~~~~~-----------------~~~~~~~~~~l~v~n 215 (307)
.-||.|+- ..-..+.+..|+|..+...+ -.++|.-+..+-.- .-.......+||+.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 56777754 34456677778887654322 23333222211100 001223345788888
Q ss_pred CCCC------------CCHHHHHHHHhhhCCCeeEEEEEe-----cCCCCCc-----ccEEE---------EEeCCHHHH
Q 021788 216 LAPD------------VTDSILQETFSSKYPSVKGAKVII-----DSNTGRT-----KGYGF---------VRFGDENER 264 (307)
Q Consensus 216 lp~~------------~t~~~l~~~F~~~~G~v~~i~i~~-----d~~~~~~-----~g~af---------V~F~~~~~A 264 (307)
||-. -+++.|+..| +.||.|..|.|.. ..-+|+. .||+| |.|.....-
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgf 235 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGF 235 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHH-HHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhH
Confidence 7742 4678899999 5999999887753 2223333 34433 444445555
Q ss_pred HHHHHHhcCce----ecCe----eEEEEecCCC
Q 021788 265 SRAMTEMNGVY----CSSR----PMRIDVATPK 289 (307)
Q Consensus 265 ~~A~~~l~g~~----i~g~----~i~v~~a~~k 289 (307)
..|+..|.|.. ++++ .++|.|.+++
T Consensus 236 a~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 236 AQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 56666666643 3343 5777776654
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.74 E-value=0.79 Score=30.47 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 126 WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 126 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
.++-++++..|..|+-. +|..|+ + | =||.|.+.++|++|....+|..+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEE
Confidence 56788999999999743 344554 3 2 38999999999999999998876
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.40 E-value=0.22 Score=47.33 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+..++||+|+-+.+..+-++.++. .+|.|..+.... |+|.+|..+..+..|+..|+-..++|..+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 3445677999999999999999999996 999998776442 899999999999999999999999888877
Q ss_pred EEec
Q 021788 283 IDVA 286 (307)
Q Consensus 283 v~~a 286 (307)
+...
T Consensus 105 ~~~d 108 (668)
T KOG2253|consen 105 ENVD 108 (668)
T ss_pred ccch
Confidence 7664
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.06 E-value=0.43 Score=38.82 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=44.2
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC--CCCCCCCCCceEEEeccCC
Q 021788 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQPFRLNWATFS 197 (307)
Q Consensus 128 t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~~~~~~v~~~~a~~~ 197 (307)
....|+++|..++.+..+..++.- +-..|.|.+.++|.+|...|+ +..+ .+..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcccc
Confidence 347899999999999998888764 358999999999999999998 7777 5556788777543
No 215
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.82 E-value=0.85 Score=39.43 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
.=|-|-++++.-. .-|..+|++||+|++....... .+-+|.|.+.-+|.+||.+ +|+.|.+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhh-cCeeecc
Confidence 3466667777644 4677899999999877544222 4899999999999999984 8887753
No 216
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.78 E-value=2.2 Score=36.93 Aligned_cols=82 Identities=9% Similarity=0.140 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecC-------CCCCcccEEEEEeCCHHHHHHH----HHHhcC-
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-------NTGRTKGYGFVRFGDENERSRA----MTEMNG- 273 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~-------~~~~~~g~afV~F~~~~~A~~A----~~~l~g- 273 (307)
-.++.|.+.|+..+++-..+.+.|. +||.|++|+++.+. +.-.......+.|-+.+.|..- +..|.-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999996 99999999999775 1112335789999999998654 344443
Q ss_pred -ceecCeeEEEEecCC
Q 021788 274 -VYCSSRPMRIDVATP 288 (307)
Q Consensus 274 -~~i~g~~i~v~~a~~ 288 (307)
..+....|+|+|+.=
T Consensus 92 K~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSL 107 (309)
T ss_pred HHhcCCcceeEEEEEE
Confidence 346788888888763
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=86.18 E-value=1.2 Score=32.67 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHhhh--CCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 216 LAPDVTDSILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 216 lp~~~t~~~l~~~F~~~--~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
-|+.+|..+|+++|+|. |-.|.+-.|.+|.-..-+...||.-|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 47789999999999753 55565555555533223345678777654
No 218
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=81.73 E-value=13 Score=33.87 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.9
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCceec--CeeEEEEecC
Q 021788 252 GYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT 287 (307)
Q Consensus 252 g~afV~F~~~~~A~~A~~~l~g~~i~--g~~i~v~~a~ 287 (307)
-||+|++++.+.+......|+|.+++ +..+.++|.-
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 38999999999999999999998886 5677787753
No 219
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=81.34 E-value=3.7 Score=38.74 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=9.3
Q ss_pred CChhHHHHHHHhcCCCC
Q 021788 7 GDANAAAAAAAAVSGGA 23 (307)
Q Consensus 7 ~~~~~a~~a~~~~~~~~ 23 (307)
|.+.+|+.++|.++...
T Consensus 128 g~sgtA~~~~av~s~~~ 144 (742)
T KOG4274|consen 128 GTSGTAPHSMAVVSTAT 144 (742)
T ss_pred CCCccchhHHHHhccCC
Confidence 44555666666655443
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.29 E-value=8.5 Score=33.19 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=35.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCe-eEEEEEecCCCCCcccEEEEEeCCHH
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDEN 262 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v-~~i~i~~d~~~~~~~g~afV~F~~~~ 262 (307)
..-|+|+||+.++.-.||+..+. +-+-+ .++.+ .-+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr-~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELR-KRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHH-hcCCCceeEee------ecCCcceeEecCCcc
Confidence 35699999999999999999996 55543 23322 224568999998754
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=79.07 E-value=15 Score=31.79 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHH
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~ 169 (307)
.......-|+++||+.++.-.||+..+.+-+.+ -+.+.. ....|-||++|.+...
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccC
Confidence 334445569999999999999999999987743 233332 3345779999988643
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.00 E-value=1.4 Score=35.28 Aligned_cols=79 Identities=10% Similarity=0.168 Sum_probs=52.3
Q ss_pred CeEEEcCCCCCC-CHHHH----HHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEE
Q 021788 209 LSIFVGDLAPDV-TDSIL----QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMR 282 (307)
Q Consensus 209 ~~l~v~nlp~~~-t~~~l----~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~i~ 282 (307)
.++.+.+++..+ ++... ..+|. .|.+..-..+++ +.++..|.|.+.+.|..|...++...|.|. .++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFr-q~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFR-QINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHh-hhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 345555665542 22223 33443 444444333333 345678999999999999999999999988 999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
+-|+.+-.....
T Consensus 84 ~yfaQ~~~~~~~ 95 (193)
T KOG4019|consen 84 LYFAQPGHPESN 95 (193)
T ss_pred EEEccCCCcccc
Confidence 999988755444
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=7.2 Score=35.25 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=45.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHH
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (307)
-..+|-|.++|.....+||..+|+.|+. --+|+.+.|. .+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3457899999999999999999999974 3355555554 699999999999999974
No 224
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=76.58 E-value=6.3 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.415 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEEecC----CCCCcccEEEEEeCCHHHHHH
Q 021788 219 DVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~i~i~~d~----~~~~~~g~afV~F~~~~~A~~ 266 (307)
.++.+||++-+++-|-.-.++.+..+- .+|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 688899999988777765555444332 34688889865 777777653
No 225
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.56 E-value=6.6 Score=26.24 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCC
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
++|++.|.+.--.|..+.-+..+.++.+--..||+.+...+.. +.++=..+++..|+|...+.++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCCCC
Confidence 5677777533335777777777766777778889888776633 3445567788888888765543
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.23 E-value=18 Score=24.40 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 125 HWMDETFLHNCFSHTG-----QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 125 ~~~t~~~l~~~f~~~G-----~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..++..+|..++...+ .|-+|.+..+ |.||+-.. +.|..+++.|++..+. ++.+++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~--gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIK--GKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SS--S----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCC--CeeEEEE
Confidence 4678889999888765 3556666543 78888754 4788999999999884 4555544
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.07 E-value=10 Score=34.37 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=44.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
-..+|-|.++|.....+||...|. .|++ --+|.++.|. +||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 446899999999988889999996 7775 3456666552 699999999999999954
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=70.34 E-value=16 Score=28.31 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=66.7
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 117 TIWIGDLF--HWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 117 ~l~v~nLp--~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
...||.+. ...+-..|...+.. ++....+.+..-. .++..+.|.+.+++.++++. ....+ .+..+.+..
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~--~~~~~~l~~ 88 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNF--NGHFLILQR 88 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccc--cccchhhhh
Confidence 34444442 23566667666655 3443344444322 15889999999999988873 22222 222222222
Q ss_pred ccCCCCC-CcccCCCCCeEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEE
Q 021788 194 ATFSGSD-RRTEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVI 242 (307)
Q Consensus 194 a~~~~~~-~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~ 242 (307)
-.+.... ...-......|.|.|||.. .+++-|+.+.+ .+|.+.++...
T Consensus 89 W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~ 138 (153)
T PF14111_consen 89 WSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDEN 138 (153)
T ss_pred hcccccccccceeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcC
Confidence 1111111 1111223456888999987 67777788885 99999987654
No 229
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=69.34 E-value=15 Score=26.65 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEEecCCC----CCcccEEEEEeCCHHHHHH
Q 021788 219 DVTDSILQETFSSKYPSVKGAKVIIDSNT----GRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~i~i~~d~~~----~~~~g~afV~F~~~~~A~~ 266 (307)
..+..+|++.+...|+.-.+..|+..-.| |.+.|||.| |+|.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 67888999888777886555544433222 466666644 677776654
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.51 E-value=21 Score=24.94 Aligned_cols=57 Identities=9% Similarity=0.203 Sum_probs=41.0
Q ss_pred EEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 212 FVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 212 ~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
|+-.++...+..+|++.++.-||. |.+|..+.-+. ...-|+|++..-.+|..+...|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 344567799999999999756764 66776665532 2346999999999988876544
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.44 E-value=1.1 Score=41.94 Aligned_cols=71 Identities=7% Similarity=0.066 Sum_probs=55.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
...+|+||++|+++.++-.+|..+++.+--+..+.+..+......+.+++|+|+---....|+..|++..+
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 34678899999999999999999999987666666555443445566789999887777777777777655
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=64.26 E-value=1 Score=42.19 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
...|+|++.|+++.++..+|..+++ .+..+.++-+-.+..-.+...+.+|+|+---....|+.+||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck-~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCK-GIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhc-cCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3457899999999999999999996 8887777655443333344567889998877777788888887665443
No 233
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.34 E-value=35 Score=23.39 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
-|+-.++.+.+..+|++.++..|+. |..|..+.-+. ...-|||++..-.+|..+-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4445677899999999999755763 66666655432 2346999999888887765443
No 234
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=60.04 E-value=24 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.433 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHhhhCC-CeeEEEEEecC----CCCCcccEEEEEeCCHHHHHH
Q 021788 219 DVTDSILQETFSSKYP-SVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G-~v~~i~i~~d~----~~~~~~g~afV~F~~~~~A~~ 266 (307)
..+..||++.+...|+ .-.++.|+..- -.|.+.|||.| |+|.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 6788999999987788 33333333221 23566777754 677776654
No 235
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=59.89 E-value=46 Score=32.02 Aligned_cols=85 Identities=11% Similarity=0.248 Sum_probs=54.7
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCCc---------eEEEeccCCCCCC-----cccCCCCCeEEEcCCCCCCCHHH
Q 021788 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQP---------FRLNWATFSGSDR-----RTEACSDLSIFVGDLAPDVTDSI 224 (307)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~g~~~~~~~~~---------v~~~~a~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~ 224 (307)
-||+++.++..-+-..+.|+...+....+. +.-..-++..... +.+......+|+.+|..++.++.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 589999998888877777776655321110 0000111111111 13445567899999999999888
Q ss_pred HHHHHhhhCCCeeEEEEEec
Q 021788 225 LQETFSSKYPSVKGAKVIID 244 (307)
Q Consensus 225 l~~~F~~~~G~v~~i~i~~d 244 (307)
-.+++. .....+.++|++.
T Consensus 318 Q~~~ir-sipGlEna~i~rp 336 (621)
T COG0445 318 QEQIIR-SIPGLENAEILRP 336 (621)
T ss_pred HHHHHH-hCcccccceeecc
Confidence 888885 7788888888765
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.93 E-value=12 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHH-HHHHHH
Q 021788 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA-AEKVLQ 175 (307)
Q Consensus 127 ~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~-a~~a~~ 175 (307)
++.++|++.|+.|.++ +++.+.++. ...|+++|+|.+.-. -..|++
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999887 466666652 567899999987433 344443
No 237
>PRK11901 hypothetical protein; Reviewed
Probab=58.31 E-value=27 Score=30.96 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=43.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEE--EEeCCHHHHHHHHHHhCCCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGF--VEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~af--V~f~~~~~a~~a~~~l~g~~ 181 (307)
....+|-|..+ .+++.|..|....+ +.+++++....+|+. .|.. =.|.+.++|..|+..|-...
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34445555544 46888999988886 456777765544443 3443 45999999999999876543
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.56 E-value=42 Score=23.47 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=41.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHh
Q 021788 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (307)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 177 (307)
-|+-.++.+.+..+++..++. || .|.+|..+.-+ . ..--|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999998 56 67777766544 1 2234999999988888776543
No 239
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.54 E-value=25 Score=22.95 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCeeEEEEee
Q 021788 130 TFLHNCFSHTGQVVNVKVIR 149 (307)
Q Consensus 130 ~~l~~~f~~~G~i~~~~~~~ 149 (307)
.+||++|+..|+|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999997776654
No 240
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=25 Score=30.94 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=65.0
Q ss_pred CCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC-CCcccEEEEEeCCHHH
Q 021788 185 TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENE 263 (307)
Q Consensus 185 ~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~-~~~~g~afV~F~~~~~ 263 (307)
....++++..+.+.-.......-+-.++..-+.......--+++. +.|+.|...+....+.+ |+.-=||.|+|++..+
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~-~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAE-EEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHH-HHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 344455554444333222212222334445555555555555566 37777777665544432 2334688899988777
Q ss_pred HHHHHHHhcCceecCeeEEEEecCCCCCCCcccccCCCCcccc
Q 021788 264 RSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQDICWG 306 (307)
Q Consensus 264 A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~ 306 (307)
+-..+ .|| .-+.-+.|+-.+.++....++++++..++
T Consensus 118 ~Fq~l-~ln-----~~P~l~~f~P~~~n~~~s~~~d~~~~g~~ 154 (331)
T KOG2603|consen 118 VFQQL-NLN-----NVPHLVLFSPAKGNKKRSDQMDQQDLGFE 154 (331)
T ss_pred HHHHh-ccc-----CCCeEEEeCCCccccccCccchhhhcchh
Confidence 66655 344 34555566556666778888988877653
No 241
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.97 E-value=7.4 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFS 137 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~ 137 (307)
...++|.|.|||..+++++|++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3567899999999999999988763
No 242
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=51.87 E-value=60 Score=31.03 Aligned_cols=120 Identities=10% Similarity=0.075 Sum_probs=65.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCC-CCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHH----HHHhhhC
Q 021788 159 YGFVEFYSRAAAEKVLQSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ----ETFSSKY 233 (307)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~g~~~~~~-~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~ 233 (307)
.-||+=.|..+...|++.....-..|+ ..-+.|...+..++.. .+....+.+..-++|+..|+..+- +++.+.|
T Consensus 564 L~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgid-F~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~ 642 (755)
T KOG1131|consen 564 LLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGID-FDHHYGREVIMEGIPYQYTESRILKARLEYLRDQF 642 (755)
T ss_pred eEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcc-cccccCceEEEEeccchhhHHHHHHHHHHHHHHHh
Confidence 455665565555555554332222222 2334444444433322 344556677778999999986552 2333344
Q ss_pred CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH-HHhcCceecCeeEEEEecCCCCCCCc
Q 021788 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM-TEMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 234 G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~-~~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
+. . -.-|++|+-...|..|+ +.|.++.=.|-.|-..--..+.++++
T Consensus 643 ~i-r--------------E~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aDkRf~R~dKR~ 689 (755)
T KOG1131|consen 643 QI-R--------------ENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFADKRFSRGDKRS 689 (755)
T ss_pred cc-c--------------ccceechHhHHHHHHHHHHHHhccccceeeEeeehhhccccchh
Confidence 31 1 13589999999999888 67777654454444433333333333
No 243
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=51.50 E-value=29 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=43.0
Q ss_pred HHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 223 ~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
+.|.+.|. .+| .+..+.-+..+.++.+--.-+|+.....+-.. .|+=+.++|+.|.|.....
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 35777775 555 47778878777777777788888876643332 5566678899988876443
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.28 E-value=21 Score=32.29 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC---CcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
...+.|.|.+||+..++.+|.+-+..+-.-...........+ .-.+.+||.|...++.....+.++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456789999999999999999888886543333222211111 1235689999999998888888888664
No 245
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=50.20 E-value=30 Score=24.74 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=16.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHh
Q 021788 251 KGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 251 ~g~afV~F~~~~~A~~A~~~l 271 (307)
.-|.+++|.+.++..+|...+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 348899999999988887654
No 246
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=49.64 E-value=72 Score=21.88 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHH
Q 021788 117 TIWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (307)
.-|+-.++.+.+..+|+..++. || .|.+|..+.-+. ..--|||++...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3566678899999999999997 55 566776655431 222499999888887766544
No 247
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.24 E-value=29 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 220 ~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
.+.++|++.|+ .|..++ ++.+.++. -+.|+++|+|.+.
T Consensus 29 ~~~~~l~~~l~-~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLA-EFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHH-H---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred cCHHHHHHHHH-hcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 45589999997 798775 56666543 5678999999663
No 248
>PF14893 PNMA: PNMA
Probab=45.95 E-value=23 Score=31.77 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEe---cCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII---DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~---d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
...+.|.|.+||.++++++|.+.+....-.+-.++|+. .++.+ ..-|+|+|...-+-...=..+-| .|...+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~iP~~i~g---~gg~W~ 90 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSLIPREIPG---KGGPWR 90 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhhCchhcCC---CCCceE
Confidence 35568999999999999999998863333344444431 11111 23688998765443333223322 367788
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|-|..+..+..+
T Consensus 91 Vv~~p~~~D~e~ 102 (331)
T PF14893_consen 91 VVFKPPAPDAEF 102 (331)
T ss_pred EEecCCCCCHHH
Confidence 877666555444
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.62 E-value=57 Score=28.91 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=36.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 021788 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230 (307)
Q Consensus 160 afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (307)
|||+|++..+|..|++.+.... ...+++..|.. ..-|.=.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APe-----------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPE-----------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCC-----------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999999665443 23345444432 22344467766666666665553
No 250
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=44.45 E-value=78 Score=23.23 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEEecCC----CCCcccEEEEEeCCHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~~d~~----~~~~~g~afV~F~~~~~A~~ 266 (307)
...+..+|++.+...+|.=.++.++..-. .++++|||-| |+|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45788899998887788755554443322 2466667644 677777654
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.25 E-value=31 Score=31.18 Aligned_cols=68 Identities=13% Similarity=0.317 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
.+.+.|..||...++++|.+.+. .|..-.....+..... ..-.+.|+|.|...++...=...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45788999999999999999885 6655333322221111 12357899999999997766667777654
No 252
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.08 E-value=22 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV 145 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~ 145 (307)
.....++||+-|||..+|++.|..+.+.+|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567789999999999999999999999965444
No 253
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.23 E-value=12 Score=34.04 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHH
Q 021788 114 ETKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 175 (307)
..+.+|+.+.....+.+ ++...|.. .+++..+...+|..+..++|..|++|+..+.+.+.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567888887665555 89999998 6788888888888778889999999999999998875
No 254
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=43.23 E-value=34 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCc
Q 021788 253 YGFVRFGDENERSRAMTEMNGV 274 (307)
Q Consensus 253 ~afV~F~~~~~A~~A~~~l~g~ 274 (307)
+.+|.|.+..+|.+|-+.|...
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC
Confidence 6899999999999998888654
No 255
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=42.50 E-value=41 Score=32.70 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=48.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
+|++.+-...-+..-+..++. .++.+....++.+...+-.-+-++.+|.-...+..|. .|.+..+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~-~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~f 577 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSE-KKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKF 577 (681)
T ss_pred ceecccccccCCCcchhhCcc-cccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccc
Confidence 678877777777778888884 8888988888887776655567899999998886664 4444433
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=42.05 E-value=54 Score=21.83 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=39.4
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 130 TFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 130 ~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
++|++-|...| +|..+.-+..+.++.....-||+.+...+...+ ++=..+ .+..|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l--~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTL--CGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhh--CCeEEEEecC
Confidence 56788888888 788888888776777777888988776553322 222223 4455665553
No 257
>PRK11901 hypothetical protein; Reviewed
Probab=42.04 E-value=48 Score=29.44 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=39.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEE--EeCCHHHHHHHHHHhcC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV--RFGDENERSRAMTEMNG 273 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV--~F~~~~~A~~A~~~l~g 273 (307)
..+|-|.. .-.++.|..|.. .++ +..++|+.-..+|+. +|.+| .|.+.++|..|+..|--
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~-~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAK-KQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHH-HcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 34555544 355788888885 665 566777665444544 35443 58999999999988853
No 258
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.03 E-value=64 Score=30.94 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.1
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
||.|+|.+.+.|.+......|..+...+..+-+.|-.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 7999999999999999999999998888888777754
No 259
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.72 E-value=1.1e+02 Score=22.29 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (307)
.+|..+++ ..| |.+..|..|..+ ..=||++++.|.++..+++
T Consensus 27 PE~~a~lk-~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLK-EAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHH-HcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 46778885 777 666667666543 3459999999777766655
No 260
>PRK10905 cell division protein DamX; Validated
Probab=40.29 E-value=53 Score=29.09 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceE--EEEeCCHHHHHHHHHHhCCCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG--FVEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~a--fV~f~~~~~a~~a~~~l~g~~ 181 (307)
.+|-|+.+ .+++.|+.|..+.| +....+.....+|+. .|. +=.|.+.++|++|+..|-..+
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 45555544 46788999988886 455555554444442 233 345999999999999875443
No 261
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.96 E-value=27 Score=28.13 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCCeEEEcCCCCCCC-HH----HHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 114 ETKTIWIGDLFHWMD-ET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t-~~----~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
-..++.+.+|+..+- +. ....+|..|.+..-..+++. .+..-|.|.+++.|.+|.-.+++..+.+.. .
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~-~ 81 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKN-E 81 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCc-e
Confidence 344577777776432 22 23455665554444444433 356789999999999999999999996543 6
Q ss_pred eEEEeccC
Q 021788 189 FRLNWATF 196 (307)
Q Consensus 189 v~~~~a~~ 196 (307)
++.-++..
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 66666653
No 262
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.83 E-value=1.4e+02 Score=21.06 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHh
Q 021788 129 ETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (307)
Q Consensus 129 ~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 177 (307)
.+.++++++.+| .+.++.+.... --.+..+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHH
Confidence 446778888876 78888887644 3357889999999887766444
No 263
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.46 E-value=46 Score=28.71 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=45.6
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEee-cC----CCCCc-----CceE---------E
Q 021788 113 DETKTIWIGDLFHW------------MDETFLHNCFSHTGQVVNVKVIR-NK----QTGQS-----EGYG---------F 161 (307)
Q Consensus 113 ~~~~~l~v~nLp~~------------~t~~~l~~~f~~~G~i~~~~~~~-~~----~~g~~-----~g~a---------f 161 (307)
.-..||++.+||-. -+++.|+..|..||.|..|.|.. |+ -+|+. .||+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34557888888741 36788999999999998877642 22 23332 3333 4
Q ss_pred EEeCCHHHHHHHHHHhCCCCC
Q 021788 162 VEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 162 V~f~~~~~a~~a~~~l~g~~~ 182 (307)
|.|.....-..|+..|.|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 555556666677777777665
No 264
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=36.83 E-value=1.3e+02 Score=20.92 Aligned_cols=49 Identities=10% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEE----EecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKV----IIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i----~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
...+..+|++.+...|+.=.+..+ ...-..+.+.|||.| |+|.+.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 467788998888766665333222 222223455666644 6777776543
No 265
>PF14893 PNMA: PNMA
Probab=36.18 E-value=41 Score=30.19 Aligned_cols=79 Identities=11% Similarity=0.186 Sum_probs=46.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeec---CCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRN---KQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
..+..+.|.|.+||.+|++++|.+.+.. +-++-.++|... +.. ....++|+|...-+- + +--..|.|.+
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n~--~---~iP~~i~g~g 86 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVNY--S---LIPREIPGKG 86 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccch--h---hCchhcCCCC
Confidence 3456678999999999999999888654 223333333221 111 123678888663321 1 1223345667
Q ss_pred CceEEEeccC
Q 021788 187 QPFRLNWATF 196 (307)
Q Consensus 187 ~~v~~~~a~~ 196 (307)
-..+|-+-..
T Consensus 87 g~W~Vv~~p~ 96 (331)
T PF14893_consen 87 GPWRVVFKPP 96 (331)
T ss_pred CceEEEecCC
Confidence 7777666543
No 266
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.11 E-value=1.3e+02 Score=23.47 Aligned_cols=56 Identities=11% Similarity=0.212 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
-++-.++...+..+|++.++..|+. |..|..+.-+. |. --|||++....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHH
Confidence 4444577789999999999655663 55666554432 22 359999987777655443
No 267
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=35.89 E-value=1.5e+02 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHH
Q 021788 130 TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (307)
Q Consensus 130 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 175 (307)
.+|..+++.+| |.+..|..|..+ ..-||++++.|.++.-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 46788899998 566666665433 33589999997766655554
No 268
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=35.12 E-value=91 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=40.1
Q ss_pred CCCHHHHHHH---HhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 126 WMDETFLHNC---FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 126 ~~t~~~l~~~---f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
.+++++|+.| ...||. +.-++.|..++...-..|+.=.|.+.+..|+..+....+.
T Consensus 38 ~i~~~~lk~F~k~AkKyGV--~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGV--DYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred ecCHhhHHHHHHHHHHcCC--ceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 3455565555 667884 4556777766666667888888999999999988877663
No 269
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.82 E-value=58 Score=26.29 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhhc-CCeeEEEEeecCCCC--CcCceEEEEeCCHHHHHHHHHHh
Q 021788 127 MDETFLHNCFSHT-GQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSY 177 (307)
Q Consensus 127 ~t~~~l~~~f~~~-G~i~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l 177 (307)
.|++.|.++..-. |.+..+.+-+.. .+ ..+|-.||+|.+.+.|.+++...
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 5666666554322 677777665543 33 56789999999999999988753
No 270
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=33.06 E-value=77 Score=22.14 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=30.6
Q ss_pred eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--cCeeEEEEecCCC
Q 021788 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATPK 289 (307)
Q Consensus 236 v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i--~g~~i~v~~a~~k 289 (307)
|.+|+|..-...++-+++|-|+|++ ++ .++|..+ +...+.|..-..|
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd------~f-~I~~ikVieg~~GlFVaMPs~k 51 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD------CF-VIHDIKVIEGEKGLFVAMPSRK 51 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT------TE-EEEEEEEEEETTEEEEE--EEE
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC------EE-EEEeEEEEECCCCcEEECCCcC
Confidence 6778887765568999999999988 22 4565443 2445777764444
No 271
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.44 E-value=73 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.1
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 249 RTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 249 ~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
..+||-|||=.+..+...|++.+-+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999997776644
No 272
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.73 E-value=1.9e+02 Score=20.31 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 222 ~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
.+.+++++....|.++++.+.. |......++++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 3566777764556688888765 4456788999999999988875554
No 273
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.66 E-value=34 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
++|.+.|...||.-. .+..+|-|+||+|++.
T Consensus 89 edL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccccc--------CCccCCCeeEEehhHH
Confidence 667777755666422 1224566999999984
No 274
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=29.59 E-value=1.3e+02 Score=29.67 Aligned_cols=84 Identities=11% Similarity=0.233 Sum_probs=53.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCC---------CCceEEEeccCCCCC-----CcccCCCCCeEEEcCCCCCCCHHHH
Q 021788 160 GFVEFYSRAAAEKVLQSYSGSLMPNT---------DQPFRLNWATFSGSD-----RRTEACSDLSIFVGDLAPDVTDSIL 225 (307)
Q Consensus 160 afV~f~~~~~a~~a~~~l~g~~~~~~---------~~~v~~~~a~~~~~~-----~~~~~~~~~~l~v~nlp~~~t~~~l 225 (307)
|++++.+.+.-+-..+.++...+... +-.+....-.+.... -+.+......+|+-++..++.++.-
T Consensus 239 c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~Q 318 (618)
T PRK05192 239 CYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDVQ 318 (618)
T ss_pred CCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHHH
Confidence 78888888866666666665543221 111111111111111 1244556778999999999999999
Q ss_pred HHHHhhhCCCeeEEEEEec
Q 021788 226 QETFSSKYPSVKGAKVIID 244 (307)
Q Consensus 226 ~~~F~~~~G~v~~i~i~~d 244 (307)
.++|. ....++.++|++.
T Consensus 319 ~~~~r-~ipGle~a~i~r~ 336 (618)
T PRK05192 319 LEMLR-SIPGLENAEILRP 336 (618)
T ss_pred HHHHh-cCcCccceeEeec
Confidence 99996 8888999998875
No 275
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.29 E-value=2.6e+02 Score=21.25 Aligned_cols=59 Identities=7% Similarity=0.069 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 220 VTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 220 ~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
.+-..+.+.+. .-| .++++. .+.+ ...|+|++.++-.+|.+.|....-++-.|.+..+-
T Consensus 50 ~~~~~v~~~L~-~~gI~~ksi~--~~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLD-ANGIHIKSIT--PEND------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHH-HCCCCcceEE--eeCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 56678888886 444 344443 3322 48999999999999998887655445566655543
No 276
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=29.07 E-value=61 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=15.9
Q ss_pred CcccEEEEEeCCHHHHHHHH
Q 021788 249 RTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 249 ~~~g~afV~F~~~~~A~~A~ 268 (307)
.+....+|+|.|.+.|..+.
T Consensus 51 ~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 51 RPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred CcccEEEEEcCCHHHHHHHh
Confidence 33567999999999988764
No 277
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.98 E-value=1.7e+02 Score=29.54 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=11.5
Q ss_pred CCCCCeEEEcCCCCCCCHH
Q 021788 205 ACSDLSIFVGDLAPDVTDS 223 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~ 223 (307)
..+..-+||-.+.....+.
T Consensus 292 P~Pavy~FliDVS~~a~ks 310 (887)
T KOG1985|consen 292 PQPAVYVFLIDVSISAIKS 310 (887)
T ss_pred CCCceEEEEEEeehHhhhh
Confidence 3455667777666655554
No 278
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=28.81 E-value=4.3e+02 Score=23.70 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHH----HhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCC
Q 021788 122 DLFHWMDETFLHNC----FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (307)
Q Consensus 122 nLp~~~t~~~l~~~----f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~ 197 (307)
|.+++-+-|-++.. +++||--.++++.+-.. .++|-+-|.|.-.-. +.+....+...+...++
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~~i------ 185 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERGEIEKI------ 185 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCCCeEEE------
Confidence 45666666766665 46788766777765321 244556666633211 01111111111111111
Q ss_pred CCCCcccCCCCCeEEEcCCCCCCCHHHHH---HHHhhh-CCCeeEEEEEecCCCCCcccEEEEEeC
Q 021788 198 GSDRRTEACSDLSIFVGDLAPDVTDSILQ---ETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (307)
Q Consensus 198 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~---~~F~~~-~G~v~~i~i~~d~~~~~~~g~afV~F~ 259 (307)
.-..++.+||..+.+..+. +.+. + ++ .++++..+...+.+.|++++-+.
T Consensus 186 ----------rg~~~~~~l~~~va~r~~~~a~~~L~-~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 186 ----------RGISHAANLPPHVAERQAEAAAALLR-KALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred ----------EEEEEEccCCHHHHHHHHHHHHHHHh-hccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 1156788999888876654 4553 4 33 34555555444677788776554
No 279
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=28.46 E-value=93 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=30.1
Q ss_pred eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce-ec-CeeEEEEecCCCC
Q 021788 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CS-SRPMRIDVATPKK 290 (307)
Q Consensus 236 v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~-i~-g~~i~v~~a~~k~ 290 (307)
|.+|+|..-...|+-+++|-|+|++.- ..++.. +. ...|.|..-..|.
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd~f-------vI~~ikVieg~~GlFVaMPs~k~ 52 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDNEF-------VVHDIRVIEGNNGLFIAMPSKRT 52 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECCEE-------EEeeeEEEECCCCeEEECcCcCC
Confidence 677777655445788999999999821 334433 33 3457776644443
No 280
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.34 E-value=1.7e+02 Score=19.66 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=42.9
Q ss_pred cCCCCCCCHHHHHHHHhhhCCCe-eEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 214 GDLAPDVTDSILQETFSSKYPSV-KGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 214 ~nlp~~~t~~~l~~~F~~~~G~v-~~i~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
-.++..++-++|+..+.+.|+.. ..+.|. .|.+ | -+|...+-++-..|+..+... ++..|+|.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d-g-----D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED-G-----DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT-S-----SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC-C-----CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 35667789999998887778864 334333 3322 2 379999999999999877643 44555554
No 281
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=28.21 E-value=1.2e+02 Score=23.36 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred CeEEEcCCC----CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEE-eCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 116 KTIWIGDLF----HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE-FYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 116 ~~l~v~nLp----~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~-f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..++++++. ..+.-.+|+++|...| ..+++-.-. + |-.+.+ =.+.++....++..-...++ ....+-
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG-~~v~v~ 75 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFG-FDVPVI 75 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-T-T---EE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcC-CCeEEE
Confidence 356777773 3578899999999998 456654432 2 223322 33333333333322111111 122222
Q ss_pred EEec-cCC---CC-CCc-ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEE
Q 021788 191 LNWA-TFS---GS-DRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (307)
Q Consensus 191 ~~~a-~~~---~~-~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i 241 (307)
+.-. ... .. +-. ........++|.=|....+.+.+.++-. .-+..+.+.+
T Consensus 76 vrs~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~-~~~~~E~~~~ 131 (137)
T PF08002_consen 76 VRSAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAA-YDTGPERFRV 131 (137)
T ss_dssp EEEHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHT-S---SEEEEE
T ss_pred EeeHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhc-cCCCCcEEEE
Confidence 2211 110 01 111 1123556777777777888887777764 4444455554
No 282
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=27.88 E-value=2.4e+02 Score=27.27 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=5.5
Q ss_pred EEEcCCCCCCC
Q 021788 118 IWIGDLFHWMD 128 (307)
Q Consensus 118 l~v~nLp~~~t 128 (307)
+...|.+..+.
T Consensus 345 ~k~vnmp~~~q 355 (742)
T KOG4274|consen 345 LKFVNMPMVVQ 355 (742)
T ss_pred hhhccCCcccc
Confidence 44445555543
No 283
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.81 E-value=1e+02 Score=21.53 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=21.0
Q ss_pred CeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 141 ~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
.|.++++..-...|+.+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888766668999999999977
No 284
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=27.54 E-value=1.2e+02 Score=24.00 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 021788 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (307)
Q Consensus 225 l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (307)
|.++..+.+|+|..|++..- .+..++|-.|--.+++++|.....-++|.
T Consensus 71 It~~A~~~LGdvv~veLPe~-Gt~vskgds~gavESVKaaSeIysp~sGe 119 (172)
T KOG3373|consen 71 ITDFAQEHLGDVVYVELPEV-GTEVSKGDSFGAVESVKAASEIYSPVSGE 119 (172)
T ss_pred hhhhhhhhcCceEEEEcCCC-CCccccCcceeeeeehhhhhhhhCcCCce
Confidence 66777678999988887644 34466666676777788888777665664
No 285
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.17 E-value=77 Score=20.82 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEE
Q 021788 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV 162 (307)
Q Consensus 127 ~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV 162 (307)
.-+.+|.+.|.+.-.|.++.+...+.-+ +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 3456788888888899999998876443 455555
No 286
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.11 E-value=93 Score=26.87 Aligned_cols=34 Identities=6% Similarity=0.043 Sum_probs=26.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~ 148 (307)
.....|+|||+.+|..-|.+++...-.+.+..++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567899999999999999999876555444443
No 287
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.09 E-value=32 Score=31.35 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCCCH--------HHHHHHHhhh--CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 208 DLSIFVGDLAPDVTD--------SILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~--------~~l~~~F~~~--~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
.+.+|+.++....+. +++...|. . .+.+..++..+|......+|..|++|...+.|.+.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p-~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFP-PHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCC-CcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 356777777765544 48999995 7 6677778777776567888999999999999998763
No 288
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.82 E-value=50 Score=18.97 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhhcC
Q 021788 125 HWMDETFLHNCFSHTG 140 (307)
Q Consensus 125 ~~~t~~~l~~~f~~~G 140 (307)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
No 289
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.66 E-value=2e+02 Score=19.20 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 130 TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 130 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
.++.+.+..+| +....+.... .-++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG----~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG----GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS----SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC----CCCeEEEEECCHHHHHHHHHHHH
Confidence 35677778888 4445454320 12477888889999888887663
No 290
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=26.50 E-value=1.3e+02 Score=23.16 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 222 ~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
|.+|+..| -|.-+..+++.... ...-+-+..+.+.. ...++..|.++.+.|+.|+|..-.
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 56677766 35555555555442 12224444554554 345677889999999999998754
No 291
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=26.16 E-value=4.9e+02 Score=23.50 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=58.5
Q ss_pred cCCCCCCCHHHHHHH----HhhcCCe---eEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 121 GDLFHWMDETFLHNC----FSHTGQV---VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 121 ~nLp~~~t~~~l~~~----f~~~G~i---~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.|.+++-+-|-++.. +++||.. .++++.+-. -..+|-+-|.|..+- ++.+....+...+...++
T Consensus 118 T~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG--~yP~GgG~V~~~~~~-----~~~l~~i~l~~~G~i~~i-- 188 (341)
T cd00875 118 TNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRG--VAPGGGGEVGFRCPV-----RKPLTPHLNDSPGRIKRI-- 188 (341)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEecc--CCCCCCEEEEEEecC-----cccccceeeccCCceEEE--
Confidence 356777777777766 5678863 456665532 235566777775321 112222222212222221
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCCCHHHH---HHHHhhhCCCeeEEEEEe--cCCCCCcccEEEEEe
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSKYPSVKGAKVII--DSNTGRTKGYGFVRF 258 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l---~~~F~~~~G~v~~i~i~~--d~~~~~~~g~afV~F 258 (307)
....++.++|..+.+..+ ++.+. ++..-..+.+.. ..+.+.+.|++++-+
T Consensus 189 --------------rG~~~~~~l~~~va~r~~~~a~~~L~-~~~~dv~i~~~~~~~~~~~~~~G~gi~L~ 243 (341)
T cd00875 189 --------------RGVAYSTRVSPSIANRMIDAARGVLN-PFIPDVYIYTDVRKGDNSGKSPGFGISLV 243 (341)
T ss_pred --------------EEEEEEccCCHHHHHHHHHHHHHHHH-hhCCCceEEEEecccccCCCCCCeEEEEE
Confidence 125778899998877655 45554 454322333222 123456666666443
No 292
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.76 E-value=3.3e+02 Score=21.34 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=37.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhh--CCCeeEEEEEecCCC---------CCccc-EEEEEeCCHHH
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNT---------GRTKG-YGFVRFGDENE 263 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~--~G~v~~i~i~~d~~~---------~~~~g-~afV~F~~~~~ 263 (307)
..+++.-+...+++++.++..+.. -+++..|.+-+.++. ...+. |-+|.|++-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 578899999999999999998633 345666665443321 12233 77888887554
No 293
>PHA01632 hypothetical protein
Probab=25.71 E-value=80 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 021788 118 IWIGDLFHWMDETFLHNCFSH 138 (307)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~ 138 (307)
|.|..+|..-|+++||+.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999988654
No 294
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.53 E-value=2.2e+02 Score=22.69 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=40.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
.++.| +|+..+.++-|.++. +-+|-|... .+ + .-.+.|.+.+...+|+..+.
T Consensus 113 ~~iRv-~l~~~i~~erl~ei~-E~~gvI~Ef---ee-~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 113 ETIRV-KLKKPIQEERLQEIS-EWHGVIFEF---EE-D------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eeEEE-ecCccchHHHHHHHH-HHhceeEEe---cC-C------cEEEEeccHHHHHHHHHHHH
Confidence 35556 789999999999999 588877665 22 2 24788999999999997664
No 295
>PRK10905 cell division protein DamX; Validated
Probab=25.37 E-value=1.4e+02 Score=26.55 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=36.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEE--EEEeCCHHHHHHHHHHhc
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG--FVRFGDENERSRAMTEMN 272 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~a--fV~F~~~~~A~~A~~~l~ 272 (307)
.+|-|+. .-+++.|++|.. +.| +....++....+|+.. |. +=.|.+.++|.+|+..|-
T Consensus 248 YTLQL~A---~Ss~~~l~~fak-Klg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 248 YTLQLSS---SSNYDNLNGWAK-KEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred eEEEEEe---cCCHHHHHHHHH-HcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 4555544 456688888875 765 5555555443344422 33 236899999999998885
No 296
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=25.29 E-value=2.5e+02 Score=19.90 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHH----------HhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCC
Q 021788 122 DLFHWMDETFLHNC----------FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (307)
Q Consensus 122 nLp~~~t~~~l~~~----------f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 180 (307)
++|.+++.+++.++ +..-|.+..++.+ .|....+++++-.|.++....|..|-=.
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~ 74 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLF 74 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCc
Confidence 67888888876655 4456888888775 3556678888888888888777665433
No 297
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.26 E-value=1.8e+02 Score=18.20 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCH----HHHHHHHHH
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR----AAAEKVLQS 176 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~----~~a~~a~~~ 176 (307)
++.|.||.-..-...|++.+...-.|.++.+-... +-+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777766677899999999889888886654 3678888754 455555554
No 298
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.71 E-value=1.1e+02 Score=21.80 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=20.9
Q ss_pred CeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 141 ~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
.|.++++..-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46788887765568899999999987
No 299
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.48 E-value=2.7e+02 Score=28.50 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHhcCCCCCC
Q 021788 4 SNGGDANAAAAAAAAVSGGAGG 25 (307)
Q Consensus 4 ~~~~~~~~a~~a~~~~~~~~~~ 25 (307)
.++|..+..+.++.+++....+
T Consensus 19 ~~~g~~~~~a~~~~~~~~~p~p 40 (1007)
T KOG1984|consen 19 FYGGSSNSLAQAMPNGSINPPP 40 (1007)
T ss_pred cCCCCCchhhhhccCCccCCCC
Confidence 4678888888888887776333
No 300
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=23.76 E-value=41 Score=35.24 Aligned_cols=13 Identities=23% Similarity=-0.005 Sum_probs=6.1
Q ss_pred HHHHHHHhhcCCe
Q 021788 130 TFLHNCFSHTGQV 142 (307)
Q Consensus 130 ~~l~~~f~~~G~i 142 (307)
++++..-+..|.|
T Consensus 1966 ~~~~~~~~~lg~~ 1978 (2131)
T KOG4369|consen 1966 SPSYTDASVLGQI 1978 (2131)
T ss_pred Ccccccccccccc
Confidence 3444444455544
No 301
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=23.16 E-value=1.8e+02 Score=25.32 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCccc
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g 252 (307)
...++||+-+|++.++++|. .++...+-..+.-.|-.+++++.-+|
T Consensus 19 E~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G 64 (281)
T PF11004_consen 19 EQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRG 64 (281)
T ss_pred hCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceec
Confidence 35678999999999999887 66654554445555666667677776
No 302
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.95 E-value=3.2e+02 Score=26.10 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=35.0
Q ss_pred HHHHHHHHh---hhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 222 DSILQETFS---SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 222 ~~~l~~~F~---~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
.-+|..+|. ..+|.|.++.+...+.. ..+...++.|.+.++|..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 346666663 14777888877665543 334577899999999999988764
No 303
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=22.88 E-value=1.1e+02 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhhc------CCeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 126 WMDETFLHNCFSHT------GQVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 126 ~~t~~~l~~~f~~~------G~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
..+++++.++|..| |.+..-++..-.. ..+||.+..
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~-----~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLEP-----RGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEEC-----CEEEEEECC
Confidence 45677888887654 7777776665332 256666643
No 304
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=22.27 E-value=2.3e+02 Score=22.16 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=35.9
Q ss_pred eEEEcCCCC-CCCHHHHHHHHhhhCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 210 SIFVGDLAP-DVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 210 ~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~-i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
..|.|+|.- ..+-++|+..+..-|+...+ +++-+. .....+.|+|..+.+|..-++.|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~----~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKV----EPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeecc----ccCceEEEEEechHHHHHHHHHHh
Confidence 356777761 23345666666544544332 332222 234579999999999998888773
No 305
>PHA00742 hypothetical protein
Probab=21.80 E-value=53 Score=26.11 Aligned_cols=62 Identities=11% Similarity=0.236 Sum_probs=34.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCCee----EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYPSVK----GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G~v~----~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
++|.--..++||+.-++ +||+-. +.+|-.......-...-||.+.|.||-.+||.+|.=..+
T Consensus 92 ~~IDitGSswteeqSke----RYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isALqilNL 157 (211)
T PHA00742 92 VWIDITGSSWTEEQSKE----RYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISALQILNL 157 (211)
T ss_pred EEEEccCCccchhhhHH----hcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHHHHhhh
Confidence 45544445788876543 555532 222221111112223569999999998888877764433
No 306
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.71 E-value=2.9e+02 Score=26.36 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHh----hcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 129 ETFLHNCFS----HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 129 ~~~l~~~f~----~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
.-+|..+|. .+|-|.++.+...+. -..+...++.|.+.+++..++..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHHh
Confidence 346777766 577888887766542 23445678999999999999987643
No 307
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=21.70 E-value=1.2e+02 Score=25.49 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHH
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A 264 (307)
+.-+|+.|-..-+-++|+..+. .||.+.+ ++|.... -.|.|+++|+-
T Consensus 55 ~iavvgdl~~p~aa~gla~~La-ey~t~~~-------D~g~~aS-fv~~fdtPEdl 101 (257)
T COG3403 55 RIAVVGDLRSPSAAXGLAPLLA-EYGTISR-------DTGKYAS-FVVTFDTPEDL 101 (257)
T ss_pred eEEeccCCCCchhhhhhHHHHH-HHhhhcc-------ccCcceE-EEEEecChhhh
Confidence 4566788888888899999997 8997764 3453332 35778888775
No 308
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.59 E-value=2e+02 Score=27.93 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=36.2
Q ss_pred CHHHHHHHHh---hhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 221 TDSILQETFS---SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 221 t~~~l~~~F~---~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
+.-||..+|. ..+|.|.++.+...+. -..+..+++.|.+.++|.+|+..+-
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~-P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKI-PQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecC-CcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3457888872 2577788887765443 2345578999999999999887654
No 309
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.53 E-value=1.8e+02 Score=20.86 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=27.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEee----cCCCCCcCceEEEE
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIR----NKQTGQSEGYGFVE 163 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~~----~~~~g~~~g~afV~ 163 (307)
..|+.+||.++.+.++...-..+.. ..++++.. ....+.+.|++.+-
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l 63 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISL 63 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEE
Confidence 4589999999988876665444332 22444443 23455666766543
No 310
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.51 E-value=2.6e+02 Score=21.81 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.2
Q ss_pred eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 142 VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 142 i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
|.++.+... .+||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 555554432 579999999988889888876543
No 311
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.48 E-value=1.2e+02 Score=21.58 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHhhhCCCeeEE--EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 215 DLAPDVTDSILQETFSSKYPSVKGA--KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 215 nlp~~~t~~~l~~~F~~~~G~v~~i--~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
.+-..++...|..-| .|..-+.+ .+-+|- =+-+|.|+|.+.+.+.+|...|-.
T Consensus 19 S~~p~l~~~~i~~Q~--~~~gkk~~pp~lRkD~----W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 19 SQTPNLDNNQILKQF--PFPGKKNKPPSLRKDY----WRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred ecCcccChhHHHHhc--cCCCcccCCchhcccc----ceEeEEEECCChHHHHHHHHHHHH
Confidence 455567777777777 34333322 222221 135899999999999999877753
No 312
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.35 E-value=92 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA 239 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i 239 (307)
...+||+-|+|...|++-|.++++ ..|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vs-qlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVS-QLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHH-Hhhhhhhe
Confidence 456899999999999999999997 88865543
No 313
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.12 E-value=1.2e+02 Score=22.73 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=19.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcee
Q 021788 253 YGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 253 ~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
.|+.-|.+-+.|-.|...|-|..+
T Consensus 115 raifm~kdge~a~e~k~fll~qd~ 138 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDF 138 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccch
Confidence 388899999999999988877544
No 314
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=20.71 E-value=2.2e+02 Score=23.63 Aligned_cols=56 Identities=30% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCHHHHHH---HHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 219 DVTDSILQE---TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 219 ~~t~~~l~~---~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
.+++++|++ ... .|| |.. -|++|..++...-..|+.=.|.+....|+..+....+.
T Consensus 38 ~i~~~~lk~F~k~Ak-KyG-V~y-av~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 38 EITDEDLKEFKKEAK-KYG-VDY-AVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred ecCHhhHHHHHHHHH-HcC-Cce-EEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 455666654 443 788 443 46677666555556677778888899999888766554
No 315
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.06 E-value=87 Score=23.75 Aligned_cols=24 Identities=0% Similarity=0.079 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHhhhCCCeeEE
Q 021788 216 LAPDVTDSILQETFSSKYPSVKGA 239 (307)
Q Consensus 216 lp~~~t~~~l~~~F~~~~G~v~~i 239 (307)
+...-|+++|+++|.++||+-.-.
T Consensus 70 i~~G~Sd~eI~~~~v~RYG~~Vly 93 (126)
T TIGR03147 70 VNEGKSNQQIIDFMTARFGDFVLY 93 (126)
T ss_pred HHcCCCHHHHHHHHHHhcCCeEEe
Confidence 456789999999999999976543
Done!