Query 021788
Match_columns 307
No_of_seqs 248 out of 1741
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.7E-38 1.3E-42 263.9 18.5 171 112-290 12-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 7E-37 2.4E-41 245.6 20.3 166 116-288 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 6E-37 2.1E-41 252.9 19.9 179 111-294 9-188 (196)
4 2qfj_A FBP-interacting repress 100.0 1.1E-36 3.9E-41 255.1 20.9 177 113-292 26-208 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-36 9E-41 242.9 20.2 165 114-286 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 5.6E-36 1.9E-40 240.6 20.6 164 115-286 2-167 (167)
7 3nmr_A Cugbp ELAV-like family 100.0 2.3E-35 7.9E-40 238.9 21.4 168 114-287 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 1.1E-36 3.8E-41 245.0 12.8 166 114-290 2-167 (167)
9 3smz_A Protein raver-1, ribonu 100.0 1.9E-33 6.6E-38 245.4 21.7 174 114-293 94-268 (284)
10 2yh0_A Splicing factor U2AF 65 100.0 1.2E-33 4.2E-38 233.4 19.2 169 114-292 3-197 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-34 4.7E-39 234.6 12.7 167 111-290 9-175 (175)
12 2g4b_A Splicing factor U2AF 65 100.0 1.6E-33 5.5E-38 227.6 18.7 160 113-287 2-172 (172)
13 3pgw_A U1-A; protein-RNA compl 100.0 6.2E-33 2.1E-37 241.9 22.6 167 111-288 5-282 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.1E-33 7.2E-38 233.1 18.6 163 114-286 3-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-33 1E-37 245.2 17.7 172 114-290 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 2.2E-32 7.4E-37 231.4 21.5 165 112-289 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.7E-32 6E-37 226.7 18.3 163 114-289 2-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 6.8E-32 2.3E-36 235.6 20.0 158 113-291 20-177 (284)
19 3sde_A Paraspeckle component 1 100.0 1E-31 3.6E-36 231.6 19.7 159 111-290 18-180 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-31 1.1E-35 232.1 18.5 165 110-293 36-201 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 6.7E-26 2.3E-30 180.5 15.9 148 144-294 2-155 (158)
22 2i2y_A Fusion protein consists 99.9 4.2E-24 1.4E-28 168.5 11.6 129 154-291 10-150 (150)
23 4fxv_A ELAV-like protein 1; RN 99.9 5.5E-23 1.9E-27 150.2 11.4 81 207-288 18-98 (99)
24 2lea_A Serine/arginine-rich sp 99.9 6.5E-23 2.2E-27 158.5 8.1 127 159-294 6-132 (135)
25 4f25_A Polyadenylate-binding p 99.9 2.1E-22 7E-27 151.5 9.7 107 114-224 4-113 (115)
26 2lxi_A RNA-binding protein 10; 99.9 1.2E-22 4.2E-27 146.1 7.4 84 208-292 1-86 (91)
27 3s8s_A Histone-lysine N-methyl 99.9 1.6E-21 5.4E-26 145.2 12.0 84 206-290 4-87 (110)
28 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.5E-21 5.1E-26 156.3 10.9 133 162-295 11-158 (165)
29 2do4_A Squamous cell carcinoma 99.9 8.2E-21 2.8E-25 139.1 13.4 88 204-293 13-100 (100)
30 2lkz_A RNA-binding protein 5; 99.9 1.5E-21 5.2E-26 141.1 9.1 82 206-288 7-94 (95)
31 3md1_A Nuclear and cytoplasmic 99.9 5.4E-21 1.8E-25 135.1 11.6 81 209-290 2-82 (83)
32 2dnz_A Probable RNA-binding pr 99.9 6E-21 2.1E-25 138.4 12.0 88 206-294 3-90 (95)
33 2cq0_A Eukaryotic translation 99.9 5.5E-21 1.9E-25 140.8 11.9 91 203-294 10-100 (103)
34 2dgo_A Cytotoxic granule-assoc 99.9 1.8E-20 6.2E-25 140.8 14.6 92 202-294 9-100 (115)
35 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.7E-21 1.6E-25 136.6 10.7 83 206-289 4-86 (87)
36 2cpz_A CUG triplet repeat RNA- 99.9 7.2E-21 2.5E-25 143.1 12.2 90 204-294 21-110 (115)
37 1whw_A Hypothetical protein ri 99.9 8.4E-21 2.9E-25 138.7 12.2 88 205-293 5-92 (99)
38 2dgs_A DAZ-associated protein 99.9 9.4E-21 3.2E-25 138.5 12.4 88 205-294 7-94 (99)
39 2x1f_A MRNA 3'-END-processing 99.8 6.5E-21 2.2E-25 138.5 11.3 84 207-291 1-84 (96)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.9E-21 2.7E-25 139.7 11.9 90 205-295 9-98 (102)
41 1x5t_A Splicing factor 3B subu 99.8 6E-21 2E-25 138.7 10.7 88 206-294 3-91 (96)
42 2jrs_A RNA-binding protein 39; 99.8 7.6E-21 2.6E-25 141.2 11.0 87 203-290 21-107 (108)
43 2dnm_A SRP46 splicing factor; 99.8 7.6E-21 2.6E-25 140.0 10.9 90 204-294 9-98 (103)
44 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.5E-25 139.2 11.6 90 203-293 10-99 (105)
45 2cqc_A Arginine/serine-rich sp 99.8 2E-20 6.9E-25 135.6 12.3 85 203-288 10-94 (95)
46 4fxv_A ELAV-like protein 1; RN 99.8 8.1E-21 2.8E-25 138.7 10.2 83 112-196 16-98 (99)
47 1x4h_A RNA-binding protein 28; 99.8 2.3E-20 7.8E-25 139.4 12.7 90 204-294 11-106 (111)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.3E-20 4.3E-25 133.7 10.5 82 205-287 4-85 (85)
49 2dnh_A Bruno-like 5, RNA bindi 99.8 3.1E-20 1.1E-24 137.2 12.9 89 204-294 11-102 (105)
50 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-20 5E-25 138.2 11.1 89 205-294 9-97 (102)
51 1u6f_A Tcubp1, RNA-binding pro 99.8 2.8E-20 9.7E-25 144.6 13.3 91 204-295 38-128 (139)
52 2cpf_A RNA binding motif prote 99.8 1.5E-20 5E-25 137.2 10.9 88 206-294 3-93 (98)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-20 4.2E-25 140.6 10.7 88 204-292 22-109 (110)
54 3p5t_L Cleavage and polyadenyl 99.8 2.8E-21 9.7E-26 138.7 6.9 82 209-291 2-85 (90)
55 1p27_B RNA-binding protein 8A; 99.8 1.4E-20 4.8E-25 139.3 10.7 86 205-291 20-105 (106)
56 2e5h_A Zinc finger CCHC-type a 99.8 3.1E-20 1.1E-24 134.3 12.2 83 204-287 12-94 (94)
57 2kxn_B Transformer-2 protein h 99.8 1.2E-20 4.2E-25 144.5 10.5 88 203-291 41-128 (129)
58 2cph_A RNA binding motif prote 99.8 3E-20 1E-24 137.8 12.2 90 203-293 10-101 (107)
59 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-20 7.1E-25 138.4 11.1 90 204-294 9-101 (106)
60 2cpe_A RNA-binding protein EWS 99.8 3.2E-20 1.1E-24 139.0 12.1 90 204-294 11-108 (113)
61 2d9p_A Polyadenylate-binding p 99.8 3.6E-20 1.2E-24 136.4 12.1 89 203-294 10-98 (103)
62 2dng_A Eukaryotic translation 99.8 3.7E-20 1.3E-24 136.3 12.0 88 204-294 11-98 (103)
63 2la6_A RNA-binding protein FUS 99.8 3.6E-20 1.2E-24 135.3 11.7 83 204-287 9-99 (99)
64 1wi8_A EIF-4B, eukaryotic tran 99.8 3.7E-20 1.3E-24 136.6 11.9 88 204-294 11-99 (104)
65 2div_A TRNA selenocysteine ass 99.8 2.8E-20 9.5E-25 136.0 11.1 86 205-291 6-96 (99)
66 4f25_A Polyadenylate-binding p 99.8 2.3E-20 7.9E-25 140.2 10.8 82 208-292 5-86 (115)
67 2dhg_A TRNA selenocysteine ass 99.8 2.8E-20 9.5E-25 137.2 10.5 90 204-295 5-96 (104)
68 1sjq_A Polypyrimidine tract-bi 99.8 2.3E-20 7.7E-25 136.4 9.7 84 205-295 13-98 (105)
69 3ns6_A Eukaryotic translation 99.8 3.5E-21 1.2E-25 141.0 5.4 84 206-290 4-94 (100)
70 2dgw_A Probable RNA-binding pr 99.8 7.3E-20 2.5E-24 131.6 12.2 85 205-293 7-91 (91)
71 2fy1_A RNA-binding motif prote 99.8 4.3E-20 1.5E-24 138.9 11.2 86 205-292 4-89 (116)
72 2cq3_A RNA-binding protein 9; 99.8 1.6E-19 5.4E-24 132.9 14.0 90 203-295 10-99 (103)
73 4a8x_A RNA-binding protein wit 99.8 3.2E-20 1.1E-24 132.5 9.9 84 207-291 3-87 (88)
74 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-19 5.1E-24 140.5 14.4 87 111-199 38-124 (139)
75 2dh8_A DAZ-associated protein 99.8 3.8E-20 1.3E-24 136.8 10.3 90 203-294 11-100 (105)
76 2m2b_A RNA-binding protein 10; 99.8 1.4E-20 4.7E-25 144.8 8.0 89 204-294 19-113 (131)
77 2cqd_A RNA-binding region cont 99.8 8.9E-20 3.1E-24 137.2 12.3 88 203-292 12-99 (116)
78 2rs2_A Musashi-1, RNA-binding 99.8 5.5E-20 1.9E-24 136.8 10.9 88 203-292 20-107 (109)
79 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-19 5.5E-24 132.9 13.4 88 203-293 10-97 (103)
80 3n9u_C Cleavage and polyadenyl 99.8 3.3E-20 1.1E-24 146.7 9.9 83 207-290 54-138 (156)
81 3ucg_A Polyadenylate-binding p 99.8 6.2E-20 2.1E-24 131.3 10.5 82 207-290 5-86 (89)
82 2khc_A Testis-specific RNP-typ 99.8 3.5E-20 1.2E-24 139.9 9.6 84 203-287 35-118 (118)
83 1p1t_A Cleavage stimulation fa 99.8 1.8E-20 6.3E-25 138.2 7.3 88 207-295 7-94 (104)
84 2cqg_A TDP-43, TAR DNA-binding 99.8 2.5E-19 8.7E-24 131.8 13.4 89 203-294 10-98 (103)
85 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-19 3.8E-24 131.9 11.3 83 206-292 7-93 (96)
86 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-20 3.7E-25 173.3 7.1 90 205-295 99-188 (437)
87 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-19 4.3E-24 143.7 12.3 88 205-293 36-123 (156)
88 2cqp_A RNA-binding protein 12; 99.8 6.2E-20 2.1E-24 133.8 9.6 85 205-290 12-96 (98)
89 2do0_A HnRNP M, heterogeneous 99.8 2.6E-19 8.8E-24 134.3 13.1 89 204-294 11-99 (114)
90 2cq1_A PTB-like protein L; RRM 99.8 2.5E-19 8.6E-24 130.8 12.6 86 203-295 10-97 (101)
91 3r27_A HnRNP L, heterogeneous 99.8 1.1E-19 3.7E-24 131.4 10.5 79 205-290 18-98 (100)
92 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-19 4.7E-24 135.6 11.4 84 204-294 27-112 (119)
93 3ex7_B RNA-binding protein 8A; 99.8 7.5E-20 2.6E-24 139.7 10.1 89 204-293 18-106 (126)
94 2ywk_A Putative RNA-binding pr 99.8 9.8E-20 3.3E-24 132.0 10.2 83 204-288 12-94 (95)
95 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-19 4.5E-24 130.5 10.8 85 205-292 5-89 (92)
96 2kt5_A RNA and export factor-b 99.8 2.9E-19 1E-23 136.0 13.0 86 204-291 31-116 (124)
97 1x4b_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 137.7 9.4 86 206-293 25-110 (116)
98 1x4a_A Splicing factor, argini 99.8 2.9E-19 1E-23 132.9 12.4 86 204-293 18-103 (109)
99 3ulh_A THO complex subunit 4; 99.8 2E-19 7E-24 133.2 11.4 83 204-288 25-107 (107)
100 3s7r_A Heterogeneous nuclear r 99.8 2.2E-19 7.6E-24 127.9 11.2 80 205-286 8-87 (87)
101 3s8s_A Histone-lysine N-methyl 99.8 1.7E-19 5.8E-24 134.2 10.5 82 113-196 4-85 (110)
102 2ek1_A RNA-binding protein 12; 99.8 6.4E-20 2.2E-24 133.0 7.8 82 206-288 13-94 (95)
103 1x4e_A RNA binding motif, sing 99.8 3.4E-20 1.2E-24 131.5 6.0 81 206-287 3-83 (85)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.5E-20 1.5E-24 135.1 6.7 84 204-290 15-99 (100)
105 2cpi_A CCR4-NOT transcription 99.8 2.3E-19 7.9E-24 133.9 10.7 88 205-293 12-105 (111)
106 1x5u_A Splicing factor 3B subu 99.8 7.8E-19 2.7E-23 129.6 13.2 87 111-199 11-97 (105)
107 2wbr_A GW182, gawky, LD47780P; 99.8 2E-19 6.8E-24 125.5 9.3 74 207-287 6-79 (89)
108 2fc8_A NCL protein; structure 99.8 5E-19 1.7E-23 130.0 12.0 88 203-294 10-97 (102)
109 2err_A Ataxin-2-binding protei 99.8 2.4E-19 8.3E-24 133.3 10.3 85 203-290 24-108 (109)
110 2jwn_A Embryonic polyadenylate 99.8 2.6E-19 8.7E-24 136.4 10.7 85 207-293 35-119 (124)
111 1s79_A Lupus LA protein; RRM, 99.8 1.5E-19 5.1E-24 132.8 9.0 81 205-288 8-88 (103)
112 2dgo_A Cytotoxic granule-assoc 99.8 7.8E-19 2.7E-23 131.8 13.1 90 110-201 10-99 (115)
113 2dis_A Unnamed protein product 99.8 1.5E-19 5.1E-24 134.4 9.0 87 206-293 6-96 (109)
114 1wex_A Hypothetical protein (r 99.8 3.9E-19 1.3E-23 130.6 11.0 83 204-293 11-95 (104)
115 2lxi_A RNA-binding protein 10; 99.8 4.5E-20 1.6E-24 132.6 5.9 83 115-199 1-85 (91)
116 2cq4_A RNA binding motif prote 99.8 9E-20 3.1E-24 136.8 7.7 83 207-291 24-106 (114)
117 1x4c_A Splicing factor, argini 99.8 9.6E-19 3.3E-23 129.8 13.1 85 206-298 13-102 (108)
118 2mss_A Protein (musashi1); RNA 99.8 9.5E-20 3.2E-24 126.0 7.1 75 210-286 1-75 (75)
119 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.5E-23 128.4 13.7 88 111-199 11-99 (105)
120 2khc_A Testis-specific RNP-typ 99.8 4.6E-19 1.6E-23 133.7 11.4 83 110-194 35-117 (118)
121 1x5o_A RNA binding motif, sing 99.8 5.6E-19 1.9E-23 132.4 11.6 85 204-290 21-113 (114)
122 2fc9_A NCL protein; structure 99.8 5.8E-19 2E-23 129.4 11.3 86 204-294 11-96 (101)
123 1why_A Hypothetical protein ri 99.8 4.9E-19 1.7E-23 128.8 10.8 82 205-293 14-97 (97)
124 1wez_A HnRNP H', FTP-3, hetero 99.8 1.8E-19 6.2E-24 132.2 8.2 84 205-292 12-95 (102)
125 2lkz_A RNA-binding protein 5; 99.8 1.5E-19 5.2E-24 130.5 7.3 85 112-196 6-94 (95)
126 2cq0_A Eukaryotic translation 99.8 6.3E-19 2.2E-23 129.7 10.8 88 110-199 10-97 (103)
127 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-18 4.8E-23 127.5 12.6 87 111-199 8-94 (102)
128 1x4d_A Matrin 3; structural ge 99.8 3.6E-19 1.2E-23 129.9 9.3 81 205-292 12-95 (102)
129 2dnz_A Probable RNA-binding pr 99.8 1.8E-18 6E-23 125.3 12.9 85 113-199 3-87 (95)
130 2e5h_A Zinc finger CCHC-type a 99.8 8.7E-19 3E-23 126.7 11.1 83 111-195 12-94 (94)
131 2cph_A RNA binding motif prote 99.8 1.9E-18 6.5E-23 128.0 13.2 87 111-199 11-99 (107)
132 2cqc_A Arginine/serine-rich sp 99.8 6.8E-19 2.3E-23 127.4 10.4 84 110-195 10-93 (95)
133 2cpy_A RNA-binding protein 12; 99.8 2.6E-19 8.9E-24 134.2 8.4 83 205-290 12-95 (114)
134 2ki2_A SS-DNA binding protein 99.8 4E-20 1.4E-24 132.6 3.8 82 209-292 2-83 (90)
135 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.4E-24 125.5 6.6 76 209-286 1-76 (77)
136 1x4g_A Nucleolysin TIAR; struc 99.8 9.6E-19 3.3E-23 130.1 11.3 84 205-295 22-105 (109)
137 2hgl_A HNRPF protein, heteroge 99.8 1.8E-19 6.2E-24 138.7 7.6 83 205-290 41-126 (136)
138 2dgs_A DAZ-associated protein 99.8 2.5E-18 8.6E-23 125.5 13.3 86 111-199 6-91 (99)
139 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.6E-19 1.9E-23 125.8 9.6 83 113-197 4-86 (87)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.2E-19 2.8E-23 136.4 11.3 83 203-286 58-140 (140)
141 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.4E-23 124.7 11.4 81 205-294 5-85 (90)
142 2nlw_A Eukaryotic translation 99.8 4.6E-19 1.6E-23 130.9 9.2 84 204-290 11-101 (105)
143 2db1_A Heterogeneous nuclear r 99.8 2.7E-19 9.4E-24 134.9 8.0 83 205-290 14-99 (118)
144 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4E-23 130.9 11.5 87 111-199 21-107 (115)
145 2cpx_A Hypothetical protein FL 99.8 1.7E-19 5.9E-24 135.5 6.8 89 205-294 22-110 (115)
146 1x4h_A RNA-binding protein 28; 99.8 2.3E-18 7.8E-23 128.4 12.9 87 111-199 11-103 (111)
147 1whw_A Hypothetical protein ri 99.8 1.8E-18 6.1E-23 126.3 12.0 86 112-199 5-90 (99)
148 2a3j_A U1 small nuclear ribonu 99.8 6.5E-19 2.2E-23 134.1 10.0 82 205-290 26-111 (127)
149 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-18 6.6E-23 127.7 12.4 89 111-199 9-98 (106)
150 1fj7_A Nucleolin RBD1, protein 99.8 7.4E-20 2.5E-24 134.2 4.5 85 205-292 14-98 (101)
151 2la6_A RNA-binding protein FUS 99.8 2E-18 6.9E-23 126.0 12.2 82 111-194 9-98 (99)
152 2hvz_A Splicing factor, argini 99.8 6.8E-19 2.3E-23 129.0 9.7 95 116-217 1-100 (101)
153 1wg5_A Heterogeneous nuclear r 99.8 8E-19 2.7E-23 129.3 10.1 83 205-290 12-95 (104)
154 2dnm_A SRP46 splicing factor; 99.8 1.7E-18 5.7E-23 127.4 11.8 87 111-199 9-95 (103)
155 2hgn_A Heterogeneous nuclear r 99.8 7.8E-20 2.7E-24 141.2 4.8 125 158-292 2-126 (139)
156 2e5j_A Methenyltetrahydrofolat 99.8 1.3E-18 4.6E-23 126.5 11.1 82 204-291 15-96 (97)
157 2d9p_A Polyadenylate-binding p 99.8 3E-18 1E-22 126.0 13.1 86 110-199 10-95 (103)
158 2do4_A Squamous cell carcinoma 99.8 2.6E-18 8.9E-23 125.6 12.6 85 111-198 13-97 (100)
159 3lqv_A PRE-mRNA branch site pr 99.8 5.9E-19 2E-23 132.5 9.3 105 112-235 5-109 (115)
160 2jrs_A RNA-binding protein 39; 99.8 2.4E-18 8.2E-23 127.6 12.5 86 110-197 21-106 (108)
161 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.4E-23 127.0 10.8 88 111-198 5-95 (99)
162 3md1_A Nuclear and cytoplasmic 99.8 1.1E-18 3.7E-23 123.1 10.1 81 115-197 1-81 (83)
163 2kxn_B Transformer-2 protein h 99.8 1.6E-18 5.6E-23 132.6 11.7 85 111-197 42-126 (129)
164 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.6E-19 3.3E-23 123.9 9.7 82 112-195 4-85 (85)
165 2cpd_A Apobec-1 stimulating pr 99.8 4.4E-18 1.5E-22 124.2 13.4 83 203-294 10-94 (99)
166 1x4f_A Matrin 3; structural ge 99.8 6.5E-19 2.2E-23 130.4 9.0 84 205-295 22-108 (112)
167 2dgt_A RNA-binding protein 30; 99.8 3E-18 1E-22 123.3 12.1 81 204-293 6-86 (92)
168 2dnn_A RNA-binding protein 12; 99.8 6.5E-19 2.2E-23 130.5 8.7 79 207-289 15-93 (109)
169 2la4_A Nuclear and cytoplasmic 99.8 9.1E-19 3.1E-23 128.3 9.4 77 206-289 25-101 (101)
170 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.1E-23 127.9 10.0 88 111-200 8-95 (102)
171 2jvr_A Nucleolar protein 3; RN 99.8 8.1E-19 2.8E-23 130.2 9.1 79 207-290 27-106 (111)
172 3p5t_L Cleavage and polyadenyl 99.8 4.4E-19 1.5E-23 127.2 7.4 81 116-198 2-84 (90)
173 2jvo_A Nucleolar protein 3; nu 99.8 1.8E-18 6.1E-23 128.3 10.9 81 203-292 26-106 (108)
174 2x1f_A MRNA 3'-END-processing 99.8 1.6E-18 5.3E-23 125.9 10.1 84 114-199 1-84 (96)
175 2xnq_A Nuclear polyadenylated 99.8 2.7E-18 9.3E-23 124.8 11.4 79 203-290 17-96 (97)
176 1wel_A RNA-binding protein 12; 99.8 1.7E-19 5.8E-24 137.3 5.2 84 205-290 22-105 (124)
177 2cpj_A Non-POU domain-containi 99.8 2.3E-18 7.8E-23 125.7 10.9 82 204-292 11-92 (99)
178 1p27_B RNA-binding protein 8A; 99.8 3E-18 1E-22 126.7 11.5 84 112-197 20-103 (106)
179 3q2s_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 149.7 7.2 82 207-289 67-150 (229)
180 2m2b_A RNA-binding protein 10; 99.8 1.2E-18 4.3E-23 133.8 9.7 85 111-198 19-109 (131)
181 2lcw_A RNA-binding protein FUS 99.6 2.5E-20 8.6E-25 140.3 0.0 88 205-293 4-99 (116)
182 2cqd_A RNA-binding region cont 99.8 4.6E-18 1.6E-22 127.8 12.3 87 110-199 12-98 (116)
183 2dgu_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 125.0 12.0 82 205-295 8-89 (103)
184 2hvz_A Splicing factor, argini 99.8 1.6E-18 5.6E-23 127.0 9.5 80 209-294 1-80 (101)
185 2fy1_A RNA-binding motif prote 99.8 6.5E-18 2.2E-22 126.9 12.9 86 111-199 3-88 (116)
186 2dng_A Eukaryotic translation 99.8 3.6E-18 1.2E-22 125.6 11.2 86 110-199 10-95 (103)
187 2lmi_A GRSF-1, G-rich sequence 99.8 2.7E-19 9.1E-24 132.6 5.0 83 205-290 8-93 (107)
188 1x5t_A Splicing factor 3B subu 99.8 1.9E-18 6.4E-23 125.4 9.4 85 113-199 3-88 (96)
189 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-18 4.5E-23 130.6 8.8 84 205-292 5-88 (115)
190 1nu4_A U1A RNA binding domain; 99.8 1.2E-18 4.1E-23 126.7 8.2 83 205-291 5-91 (97)
191 3ns6_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 127.6 8.0 83 113-196 4-92 (100)
192 2cqh_A IGF-II mRNA-binding pro 99.8 2.6E-18 8.9E-23 123.9 9.8 82 205-294 5-88 (93)
193 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-18 1.4E-22 125.6 11.0 85 111-199 11-96 (104)
194 2dnp_A RNA-binding protein 14; 99.8 4.7E-18 1.6E-22 121.8 10.9 79 205-292 6-84 (90)
195 2cpe_A RNA-binding protein EWS 99.8 3.9E-18 1.3E-22 127.6 10.9 87 111-199 11-105 (113)
196 2cqp_A RNA-binding protein 12; 99.8 1.8E-18 6.2E-23 126.0 8.7 85 111-197 11-95 (98)
197 2cpf_A RNA binding motif prote 99.8 3E-18 1E-22 124.8 9.8 85 113-199 3-90 (98)
198 1fjc_A Nucleolin RBD2, protein 99.8 1.4E-18 4.8E-23 126.1 7.9 82 205-292 13-94 (96)
199 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-17 3.5E-22 123.2 12.6 86 110-199 10-95 (103)
200 2dhg_A TRNA selenocysteine ass 99.8 8.6E-18 2.9E-22 123.7 12.1 86 111-199 5-92 (104)
201 1iqt_A AUF1, heterogeneous nuc 99.8 5.6E-19 1.9E-23 122.1 5.4 75 210-286 1-75 (75)
202 2cq3_A RNA-binding protein 9; 99.8 1.5E-17 5.1E-22 122.3 13.3 87 110-200 10-96 (103)
203 1sjr_A Polypyrimidine tract-bi 99.8 4E-18 1.4E-22 134.0 10.7 79 207-290 45-125 (164)
204 2krb_A Eukaryotic translation 99.8 6.8E-19 2.3E-23 123.6 5.6 74 208-284 1-81 (81)
205 2ytc_A PRE-mRNA-splicing facto 99.8 5.8E-18 2E-22 119.9 10.4 77 204-287 8-85 (85)
206 1sjq_A Polypyrimidine tract-bi 99.8 3.2E-18 1.1E-22 125.0 9.1 82 111-200 12-95 (105)
207 2dh8_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 126.2 9.1 86 111-199 12-97 (105)
208 1oo0_B CG8781-PA, drosophila Y 99.8 4.5E-18 1.5E-22 126.6 9.9 85 111-197 22-106 (110)
209 3n9u_C Cleavage and polyadenyl 99.7 3.6E-18 1.2E-22 134.9 9.7 82 113-196 53-136 (156)
210 1wf1_A RNA-binding protein RAL 99.7 8.2E-18 2.8E-22 125.2 11.1 79 205-292 24-103 (110)
211 2ywk_A Putative RNA-binding pr 99.7 3.5E-18 1.2E-22 123.7 8.8 82 111-195 12-93 (95)
212 1s79_A Lupus LA protein; RRM, 99.7 6.2E-18 2.1E-22 124.1 10.3 80 112-195 8-87 (103)
213 2kvi_A Nuclear polyadenylated 99.7 3.6E-18 1.2E-22 123.9 8.9 81 205-294 7-88 (96)
214 2do0_A HnRNP M, heterogeneous 99.7 1.9E-17 6.4E-22 124.0 13.1 84 111-197 11-94 (114)
215 1wex_A Hypothetical protein (r 99.7 2.1E-17 7.1E-22 121.3 12.8 84 111-200 11-94 (104)
216 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-18 4.4E-23 131.6 6.3 82 206-290 21-106 (123)
217 2rs2_A Musashi-1, RNA-binding 99.7 4.8E-18 1.6E-22 126.2 9.3 86 110-198 20-105 (109)
218 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.7E-22 122.0 11.8 86 110-199 10-95 (103)
219 1x4e_A RNA binding motif, sing 99.7 1.6E-18 5.4E-23 122.8 6.1 79 113-193 3-81 (85)
220 1x5o_A RNA binding motif, sing 99.7 2.9E-17 9.9E-22 123.0 13.3 86 111-197 21-112 (114)
221 3s7r_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 120.4 9.0 81 111-194 7-87 (87)
222 2kt5_A RNA and export factor-b 99.7 4.5E-17 1.5E-21 123.9 14.5 86 111-199 31-116 (124)
223 4f02_A Polyadenylate-binding p 99.7 9E-18 3.1E-22 139.9 11.6 85 205-290 12-96 (213)
224 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-17 5.6E-22 119.4 11.4 83 112-198 5-87 (92)
225 3ucg_A Polyadenylate-binding p 99.7 8.6E-18 2.9E-22 120.1 9.8 81 114-197 5-85 (89)
226 1x5p_A Negative elongation fac 99.7 3.2E-17 1.1E-21 119.1 12.8 81 205-294 12-92 (97)
227 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.7E-22 127.1 11.4 86 111-198 18-103 (126)
228 2hgm_A HNRPF protein, heteroge 99.7 9.6E-19 3.3E-23 132.6 4.8 82 205-290 39-122 (126)
229 1x4d_A Matrin 3; structural ge 99.7 5.3E-18 1.8E-22 123.7 8.6 82 111-198 11-93 (102)
230 3zzy_A Polypyrimidine tract-bi 99.7 1.5E-17 5.2E-22 126.0 11.3 77 208-290 28-107 (130)
231 1p1t_A Cleavage stimulation fa 99.7 8.6E-18 2.9E-22 123.7 9.8 84 113-198 6-89 (104)
232 4a8x_A RNA-binding protein wit 99.7 6.9E-18 2.4E-22 120.3 8.9 82 114-197 3-85 (88)
233 2mss_A Protein (musashi1); RNA 99.7 5.3E-18 1.8E-22 117.2 8.0 75 117-194 1-75 (75)
234 2j8a_A Histone-lysine N-methyl 99.7 5.2E-18 1.8E-22 126.3 8.4 79 209-288 3-95 (136)
235 2f3j_A RNA and export factor b 99.7 6.5E-18 2.2E-22 136.3 9.7 84 205-290 85-168 (177)
236 2e44_A Insulin-like growth fac 99.7 9.6E-18 3.3E-22 121.6 9.6 80 206-290 13-93 (96)
237 2ek1_A RNA-binding protein 12; 99.7 2.2E-18 7.4E-23 124.8 6.1 81 113-195 13-93 (95)
238 2xs2_A Deleted in azoospermia- 99.7 1.8E-18 6.1E-23 127.0 5.6 81 207-291 8-88 (102)
239 1fxl_A Paraneoplastic encephal 99.7 1.8E-17 6.1E-22 132.2 11.8 83 208-291 2-84 (167)
240 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4.2E-22 123.6 10.1 82 111-195 25-106 (107)
241 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.4E-22 121.7 9.9 82 111-200 11-94 (101)
242 1wg5_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 121.6 11.2 83 111-197 11-94 (104)
243 3r27_A HnRNP L, heterogeneous 99.7 9.5E-18 3.3E-22 121.2 9.0 82 110-197 16-97 (100)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-17 4.6E-22 129.4 10.6 82 111-194 59-140 (140)
245 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.8E-22 133.1 11.0 85 207-292 2-86 (168)
246 2e5g_A U6 snRNA-specific termi 99.7 1.7E-17 5.9E-22 119.8 10.2 81 207-294 7-87 (94)
247 1wg1_A KIAA1579 protein, homol 99.7 1.6E-17 5.6E-22 118.4 9.9 76 207-290 4-79 (88)
248 2lea_A Serine/arginine-rich sp 99.7 8.9E-18 3E-22 129.6 9.1 87 111-199 43-129 (135)
249 2dgx_A KIAA0430 protein; RRM d 99.7 2.1E-17 7.2E-22 119.8 10.5 82 112-198 6-91 (96)
250 2dis_A Unnamed protein product 99.7 2.7E-17 9.3E-22 122.1 11.2 86 112-199 5-94 (109)
251 1wez_A HnRNP H', FTP-3, hetero 99.7 1.9E-17 6.4E-22 121.4 10.2 83 111-198 11-93 (102)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.5E-18 2.2E-22 117.3 7.3 76 116-194 1-76 (77)
253 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6E-18 2E-22 123.7 7.4 83 111-197 15-98 (100)
254 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.4E-17 8.2E-22 130.5 11.4 86 111-198 35-120 (156)
255 1whx_A Hypothetical protein ri 99.7 1E-17 3.5E-22 124.8 8.7 78 207-291 9-86 (111)
256 3egn_A RNA-binding protein 40; 99.7 2.8E-18 9.5E-23 133.9 5.8 84 205-292 42-133 (143)
257 2cq4_A RNA binding motif prote 99.7 5.9E-18 2E-22 126.8 7.3 83 112-197 22-104 (114)
258 1x4a_A Splicing factor, argini 99.7 7.1E-17 2.4E-21 119.9 13.1 84 111-199 18-101 (109)
259 2diu_A KIAA0430 protein; struc 99.7 3E-17 1E-21 115.6 10.2 77 207-294 7-89 (96)
260 2cpy_A RNA-binding protein 12; 99.7 9.1E-18 3.1E-22 125.8 8.1 83 111-197 11-94 (114)
261 2ad9_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 122.8 10.8 82 111-200 27-110 (119)
262 2kn4_A Immunoglobulin G-bindin 99.7 3.9E-17 1.3E-21 129.6 12.0 87 111-199 66-152 (158)
263 3d2w_A TAR DNA-binding protein 99.7 2.4E-17 8.2E-22 117.7 9.6 78 205-292 8-87 (89)
264 2cpi_A CCR4-NOT transcription 99.7 1.5E-17 5.2E-22 123.9 8.6 86 111-198 11-102 (111)
265 1why_A Hypothetical protein ri 99.7 1.2E-16 4E-21 116.1 13.1 82 111-198 13-94 (97)
266 2ki2_A SS-DNA binding protein 99.7 4.2E-18 1.4E-22 122.0 5.3 79 116-197 2-80 (90)
267 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.4E-22 123.0 8.9 84 110-197 24-107 (109)
268 2a3j_A U1 small nuclear ribonu 99.7 6E-17 2.1E-21 123.2 11.9 82 112-198 26-111 (127)
269 2e5i_A Heterogeneous nuclear r 99.7 6.3E-17 2.1E-21 122.1 11.8 76 209-291 26-104 (124)
270 2dgw_A Probable RNA-binding pr 99.7 3.9E-17 1.3E-21 117.2 10.2 82 111-197 6-87 (91)
271 2cq2_A Hypothetical protein LO 99.7 2.4E-17 8.2E-22 122.1 9.1 79 205-290 22-107 (114)
272 2wbr_A GW182, gawky, LD47780P; 99.7 3.2E-17 1.1E-21 114.3 8.8 73 114-194 6-78 (89)
273 1sjr_A Polypyrimidine tract-bi 99.7 6.7E-17 2.3E-21 127.0 11.6 86 113-202 44-129 (164)
274 2pe8_A Splicing factor 45; RRM 99.7 5.8E-17 2E-21 119.1 10.5 83 205-288 5-93 (105)
275 3beg_B Splicing factor, argini 99.7 2.4E-17 8.2E-22 123.6 8.4 80 207-294 15-99 (115)
276 2fc9_A NCL protein; structure 99.7 4.8E-17 1.6E-21 119.1 9.8 83 111-199 11-93 (101)
277 2db1_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 124.4 7.8 81 111-195 13-96 (118)
278 2jwn_A Embryonic polyadenylate 99.7 4.3E-17 1.5E-21 123.9 9.5 81 114-197 35-115 (124)
279 2cpj_A Non-POU domain-containi 99.7 1.2E-16 4E-21 116.5 11.3 81 110-198 10-90 (99)
280 1x4b_A Heterogeneous nuclear r 99.7 3.4E-17 1.1E-21 123.1 8.6 85 112-199 24-108 (116)
281 1x4c_A Splicing factor, argini 99.7 1.5E-16 5.3E-21 117.8 12.0 81 113-200 13-96 (108)
282 1wel_A RNA-binding protein 12; 99.7 2.2E-17 7.4E-22 125.6 7.6 81 112-195 22-102 (124)
283 2krb_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 114.9 7.9 69 115-185 1-75 (81)
284 3q2s_C Cleavage and polyadenyl 99.7 2.9E-17 1E-21 138.0 9.0 81 114-196 67-149 (229)
285 2fc8_A NCL protein; structure 99.7 8.7E-17 3E-21 117.9 10.3 84 111-199 11-94 (102)
286 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-17 8.2E-22 122.0 7.3 81 111-195 7-90 (107)
287 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.1E-22 126.6 7.6 80 112-195 41-123 (136)
288 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-17 4.9E-22 121.9 5.8 83 112-198 14-96 (101)
289 2nlw_A Eukaryotic translation 99.7 7.7E-17 2.6E-21 118.8 9.7 81 112-196 12-99 (105)
290 2dnq_A RNA-binding protein 4B; 99.7 2.3E-16 7.9E-21 112.9 11.8 78 112-199 5-82 (90)
291 1l3k_A Heterogeneous nuclear r 99.7 7.2E-17 2.5E-21 132.3 10.2 85 205-291 10-94 (196)
292 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-17 8.9E-22 113.6 6.4 73 117-190 1-73 (75)
293 2e5j_A Methenyltetrahydrofolat 99.7 3.6E-16 1.2E-20 113.5 12.5 80 111-197 15-94 (97)
294 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.8E-21 119.8 10.0 78 206-287 6-86 (114)
295 2dnn_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 120.0 8.0 78 113-195 14-91 (109)
296 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.8E-21 127.9 10.2 86 112-199 69-154 (165)
297 2cpx_A Hypothetical protein FL 99.7 5.5E-17 1.9E-21 121.7 7.9 87 111-199 21-107 (115)
298 1wf0_A TDP-43, TAR DNA-binding 99.7 4.9E-17 1.7E-21 115.9 7.1 80 207-294 4-83 (88)
299 1x4f_A Matrin 3; structural ge 99.7 7.6E-17 2.6E-21 119.3 8.2 81 112-198 22-103 (112)
300 2la4_A Nuclear and cytoplasmic 99.7 2.4E-17 8.2E-22 120.7 5.2 76 113-196 25-100 (101)
301 2bz2_A Negative elongation fac 99.7 1.8E-16 6.3E-21 119.7 10.1 79 205-292 36-114 (121)
302 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-16 5.3E-21 117.7 9.4 79 110-198 26-104 (108)
303 3tyt_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 130.9 10.8 77 207-289 3-80 (205)
304 2ytc_A PRE-mRNA-splicing facto 99.7 2.5E-16 8.5E-21 111.4 9.6 76 111-194 8-84 (85)
305 3md3_A Nuclear and cytoplasmic 99.7 1.9E-16 6.5E-21 126.0 10.1 81 209-291 1-81 (166)
306 3zzy_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 120.5 8.9 87 113-204 26-113 (130)
307 2e5i_A Heterogeneous nuclear r 99.7 5E-16 1.7E-20 117.1 11.8 81 115-201 25-106 (124)
308 2voo_A Lupus LA protein; RNA-b 99.7 2.8E-16 9.6E-21 128.6 11.3 119 166-289 63-187 (193)
309 2dgu_A Heterogeneous nuclear r 99.7 5.1E-16 1.7E-20 114.0 11.5 79 112-200 8-86 (103)
310 2jvr_A Nucleolar protein 3; RN 99.7 1E-16 3.5E-21 118.8 7.8 81 111-197 24-105 (111)
311 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-16 9.3E-21 116.7 10.0 81 112-200 22-102 (109)
312 2qfj_A FBP-interacting repress 99.7 1.8E-16 6.1E-21 132.0 10.0 83 207-290 27-109 (216)
313 2e44_A Insulin-like growth fac 99.7 4.8E-16 1.7E-20 112.5 10.9 80 112-197 12-92 (96)
314 2f3j_A RNA and export factor b 99.7 4.1E-16 1.4E-20 125.8 11.2 84 111-197 84-167 (177)
315 2hgn_A Heterogeneous nuclear r 99.7 6.9E-17 2.4E-21 124.7 6.3 82 111-197 42-123 (139)
316 2xnq_A Nuclear polyadenylated 99.7 4.7E-16 1.6E-20 112.8 10.2 77 111-197 18-95 (97)
317 2hzc_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 112.6 7.7 72 206-285 4-86 (87)
318 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.3E-21 115.9 6.9 82 112-198 5-90 (97)
319 2cpd_A Apobec-1 stimulating pr 99.7 1E-15 3.5E-20 111.5 11.5 79 111-199 11-91 (99)
320 2kvi_A Nuclear polyadenylated 99.7 5.4E-16 1.8E-20 112.3 9.8 78 111-198 6-84 (96)
321 2lcw_A RNA-binding protein FUS 99.5 8E-18 2.7E-22 126.5 0.0 86 112-199 4-97 (116)
322 2hgm_A HNRPF protein, heteroge 99.7 3.3E-16 1.1E-20 118.6 8.8 79 111-194 38-118 (126)
323 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-16 4.7E-21 120.4 6.6 78 113-194 21-102 (123)
324 2i2y_A Fusion protein consists 99.7 8.9E-16 3E-20 120.6 11.5 80 111-197 69-148 (150)
325 2dnp_A RNA-binding protein 14; 99.6 9.5E-16 3.2E-20 109.6 10.5 78 111-198 5-82 (90)
326 2dgt_A RNA-binding protein 30; 99.6 7.8E-16 2.7E-20 110.6 9.9 79 111-199 6-84 (92)
327 3d2w_A TAR DNA-binding protein 99.6 3.2E-16 1.1E-20 111.8 7.5 78 111-197 7-84 (89)
328 2xs2_A Deleted in azoospermia- 99.6 1.1E-16 3.6E-21 117.4 4.9 80 113-197 7-86 (102)
329 3nmr_A Cugbp ELAV-like family 99.6 6.3E-16 2.1E-20 124.2 9.8 85 207-292 2-91 (175)
330 3pgw_A U1-A; protein-RNA compl 99.6 8.6E-16 2.9E-20 133.3 11.2 83 204-290 5-91 (282)
331 2dit_A HIV TAT specific factor 99.6 2.6E-15 8.9E-20 111.9 12.2 84 204-292 11-105 (112)
332 1wf1_A RNA-binding protein RAL 99.6 1E-15 3.4E-20 113.8 9.9 76 112-197 24-100 (110)
333 2j8a_A Histone-lysine N-methyl 99.6 1.3E-16 4.5E-21 118.7 4.8 77 116-194 3-93 (136)
334 2cjk_A Nuclear polyadenylated 99.6 3.6E-16 1.2E-20 124.8 7.8 80 207-289 2-81 (167)
335 2diu_A KIAA0430 protein; struc 99.6 3.2E-15 1.1E-19 105.2 11.6 77 114-202 7-89 (96)
336 1whx_A Hypothetical protein ri 99.6 8.4E-16 2.9E-20 114.4 9.1 76 113-196 8-83 (111)
337 2e5g_A U6 snRNA-specific termi 99.6 1.5E-15 5E-20 109.6 9.9 79 112-198 5-83 (94)
338 1x5p_A Negative elongation fac 99.6 2.8E-15 9.6E-20 108.7 11.4 79 111-199 11-89 (97)
339 2cqh_A IGF-II mRNA-binding pro 99.6 8E-16 2.7E-20 110.7 8.4 79 112-199 5-85 (93)
340 2cq2_A Hypothetical protein LO 99.6 1E-15 3.4E-20 113.3 8.9 79 112-196 22-105 (114)
341 3v4m_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 112.0 9.0 83 206-289 3-97 (105)
342 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-16 1.2E-20 113.4 5.9 81 111-198 12-92 (96)
343 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.5E-20 113.9 9.1 65 113-178 6-73 (114)
344 3u1l_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.4E-20 127.6 8.7 81 205-292 131-232 (240)
345 3pgw_S U1-70K; protein-RNA com 99.6 2.4E-15 8.3E-20 137.8 11.2 84 112-197 99-182 (437)
346 2adc_A Polypyrimidine tract-bi 99.6 2.2E-15 7.4E-20 126.9 9.9 81 203-289 29-110 (229)
347 2g4b_A Splicing factor U2AF 65 99.6 2.6E-15 9E-20 120.3 9.9 80 113-194 92-171 (172)
348 3ue2_A Poly(U)-binding-splicin 99.6 2.5E-15 8.7E-20 112.5 8.9 81 207-288 19-108 (118)
349 3egn_A RNA-binding protein 40; 99.6 4E-16 1.4E-20 121.6 4.7 85 112-198 42-131 (143)
350 1wg1_A KIAA1579 protein, homol 99.6 1.6E-15 5.5E-20 108.0 7.4 76 113-197 3-78 (88)
351 3beg_B Splicing factor, argini 99.6 3.1E-15 1.1E-19 112.0 8.8 78 113-197 14-94 (115)
352 1fje_B Nucleolin RBD12, protei 99.6 5.3E-16 1.8E-20 124.9 4.5 86 204-292 9-94 (175)
353 2yh0_A Splicing factor U2AF 65 99.6 7.8E-15 2.7E-19 120.3 11.5 85 111-197 110-194 (198)
354 1jmt_A Splicing factor U2AF 35 99.6 6.6E-16 2.3E-20 113.4 4.3 72 213-286 20-103 (104)
355 1wf0_A TDP-43, TAR DNA-binding 99.6 3.6E-15 1.2E-19 106.1 7.0 78 113-199 3-80 (88)
356 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 122.5 8.0 76 208-289 3-79 (198)
357 2pe8_A Splicing factor 45; RRM 99.6 1.9E-14 6.3E-19 105.7 10.0 81 113-195 6-92 (105)
358 2bz2_A Negative elongation fac 99.6 2E-14 6.8E-19 108.5 10.3 78 111-198 35-112 (121)
359 2hzc_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 104.1 7.4 71 113-192 4-85 (87)
360 3sde_A Paraspeckle component 1 99.5 2.8E-14 9.7E-19 122.4 10.7 78 205-289 19-96 (261)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.6E-13 5.3E-18 99.6 11.6 69 218-294 27-95 (100)
362 2voo_A Lupus LA protein; RNA-b 99.5 3.6E-14 1.2E-18 116.0 8.9 78 114-195 108-185 (193)
363 3u1l_A PRE-mRNA-splicing facto 99.5 6E-14 2.1E-18 117.5 9.4 81 112-198 131-230 (240)
364 2dit_A HIV TAT specific factor 99.5 2.8E-13 9.7E-18 100.8 11.6 82 111-198 11-103 (112)
365 3s6e_A RNA-binding protein 39; 99.5 1.7E-13 5.8E-18 101.8 9.6 78 206-288 5-92 (114)
366 3tht_A Alkylated DNA repair pr 99.4 2.5E-13 8.6E-18 119.7 9.6 76 205-287 15-97 (345)
367 3v4m_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 98.1 7.9 81 113-195 3-95 (105)
368 3ue2_A Poly(U)-binding-splicin 99.4 8.9E-13 3.1E-17 98.6 7.7 80 114-195 19-107 (118)
369 3tht_A Alkylated DNA repair pr 99.4 9.4E-13 3.2E-17 116.0 8.6 111 111-230 14-130 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.4E-12 2.9E-16 90.4 12.2 77 114-199 9-92 (100)
371 1jmt_A Splicing factor U2AF 35 99.4 1.6E-13 5.3E-18 100.6 3.0 72 120-194 20-103 (104)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 1.9E-11 6.4E-16 85.3 8.0 74 206-289 5-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 2.2E-11 7.4E-16 90.6 8.5 79 205-290 15-97 (121)
374 3s6e_A RNA-binding protein 39; 99.2 7.1E-11 2.4E-15 87.6 8.8 77 113-195 5-91 (114)
375 3dxb_A Thioredoxin N-terminall 99.1 1.4E-10 4.8E-15 96.8 8.2 69 219-288 140-212 (222)
376 1owx_A Lupus LA protein, SS-B, 99.1 6.4E-10 2.2E-14 82.6 10.5 77 111-193 14-92 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 2.2E-10 7.4E-15 80.3 6.7 74 205-288 12-94 (95)
378 2l9w_A U4/U6 snRNA-associated- 98.9 1.2E-08 4.3E-13 72.7 9.4 72 207-285 20-96 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 7.3E-09 2.5E-13 72.2 7.1 75 114-199 6-88 (91)
380 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.5E-13 82.7 8.4 79 115-195 124-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 9E-08 3.1E-12 67.0 5.3 71 113-194 13-92 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.6E-06 8.9E-11 60.8 8.6 72 112-191 18-94 (117)
383 1wey_A Calcipressin 1; structu 98.1 8.7E-06 3E-10 57.9 6.9 77 207-290 4-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.0 4.8E-05 1.6E-09 53.9 9.6 89 113-221 6-99 (104)
385 1uw4_A UPF3X; nonsense mediate 97.8 9E-05 3.1E-09 51.8 7.3 68 116-183 2-71 (91)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00026 8.8E-09 49.5 8.4 68 209-277 2-71 (91)
387 2dhx_A Poly (ADP-ribose) polym 97.6 0.00079 2.7E-08 47.6 10.2 79 206-293 6-88 (104)
388 1wey_A Calcipressin 1; structu 97.6 0.0002 6.8E-09 50.9 6.8 77 114-198 4-85 (104)
389 1whv_A Poly(A)-specific ribonu 97.5 0.00076 2.6E-08 47.1 8.2 56 114-178 15-70 (100)
390 1whv_A Poly(A)-specific ribonu 97.4 0.00081 2.8E-08 47.0 7.6 56 207-272 15-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.4 0.00097 3.3E-08 48.7 8.3 72 207-287 23-95 (119)
392 2l08_A Regulator of nonsense t 97.1 0.00081 2.8E-08 47.2 5.2 70 114-183 8-79 (97)
393 2l08_A Regulator of nonsense t 97.1 0.0014 4.9E-08 46.0 6.3 70 206-276 7-78 (97)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.001 3.4E-08 46.7 5.0 54 116-178 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.00097 3.3E-08 46.8 4.4 54 209-272 7-60 (101)
396 1wwh_A Nucleoporin 35, nucleop 96.6 0.0051 1.7E-07 44.9 6.5 72 113-193 22-93 (119)
397 3pq1_A Poly(A) RNA polymerase; 96.4 0.0014 4.9E-08 59.6 3.0 57 114-176 52-108 (464)
398 3p3d_A Nucleoporin 53; structu 96.4 0.0035 1.2E-07 46.4 4.4 77 208-287 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0027 9.4E-08 57.8 3.1 56 207-269 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 93.4 0.046 1.6E-06 40.4 2.7 68 115-184 7-88 (132)
401 3d45_A Poly(A)-specific ribonu 91.4 0.7 2.4E-05 42.7 8.6 56 115-179 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 88.3 1.4 4.9E-05 40.7 8.0 55 208-272 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 78.6 6.1 0.00021 25.8 5.9 69 210-287 2-75 (76)
404 4eyt_A Telomerase associated p 65.4 29 0.00098 23.5 7.7 73 207-288 11-90 (129)
405 2cu1_A Mitogen-activated prote 61.3 18 0.00063 25.0 5.1 69 215-292 23-91 (103)
406 1xn9_A 30S ribosomal protein S 60.0 31 0.0011 24.0 6.3 49 218-267 28-80 (101)
407 2v94_A RPS24, 30S ribosomal pr 59.1 6.5 0.00022 27.8 2.7 49 218-267 37-89 (107)
408 2g1d_A 30S ribosomal protein S 54.2 6.1 0.00021 27.5 1.9 48 218-266 29-80 (98)
409 1ywx_A 30S ribosomal protein S 53.9 32 0.0011 24.0 5.5 49 218-267 28-80 (102)
410 2xzm_P RPS24E; ribosome, trans 51.4 12 0.0004 28.1 3.1 49 218-267 31-83 (149)
411 4eyt_A Telomerase associated p 47.8 61 0.0021 21.8 8.4 59 113-179 10-68 (129)
412 3u5c_Y RP50, 40S ribosomal pro 47.5 60 0.002 23.9 6.3 49 218-267 33-85 (135)
413 2i9x_A Putative septation prot 36.4 43 0.0015 22.6 3.8 48 235-289 5-54 (87)
414 3j21_T 50S ribosomal protein L 35.7 99 0.0034 20.7 5.7 56 212-270 26-82 (86)
415 4e8u_A Putative uncharacterize 34.5 83 0.0028 24.2 5.6 45 220-268 33-80 (172)
416 3lpe_A Putative transcription 33.6 1.1E+02 0.0037 20.6 5.8 46 128-178 21-71 (92)
417 2yko_A LINE-1 ORF1P; RNA-bindi 32.8 84 0.0029 25.4 5.6 80 207-286 51-149 (233)
418 2ia9_A Putative septation prot 30.7 59 0.002 22.6 3.8 48 235-289 5-54 (100)
419 2i9x_A Putative septation prot 30.6 59 0.002 21.9 3.7 26 141-166 5-30 (87)
420 2i9z_A Putative septation prot 30.4 61 0.0021 22.7 3.9 48 235-289 5-54 (105)
421 4e8u_A Putative uncharacterize 29.1 1.1E+02 0.0036 23.6 5.4 55 118-175 15-81 (172)
422 2lfv_A Protein DAMX; cell divi 35.2 12 0.0004 26.5 0.0 63 115-181 25-88 (106)
423 2ia9_A Putative septation prot 26.7 73 0.0025 22.1 3.7 26 141-166 5-30 (100)
424 3iz6_U 40S ribosomal protein S 26.6 15 0.0005 27.2 0.2 47 219-266 39-90 (138)
425 3fut_A Dimethyladenosine trans 26.0 59 0.002 26.9 3.9 32 116-148 111-142 (271)
426 2i9z_A Putative septation prot 25.9 78 0.0027 22.1 3.8 26 141-166 5-30 (105)
427 2e5p_A Protein PHF1, PHD finge 23.2 54 0.0018 20.8 2.2 11 251-261 37-47 (68)
428 1x8d_A Hypothetical protein YI 23.1 1.9E+02 0.0064 20.0 5.4 34 223-260 27-60 (104)
429 3fry_A Probable copper-exporti 22.7 1.4E+02 0.0048 18.3 5.4 55 115-176 6-60 (73)
430 3uzu_A Ribosomal RNA small sub 21.8 35 0.0012 28.5 1.6 34 115-148 114-147 (279)
431 3mfb_A Uncharacterized protein 21.7 1.3E+02 0.0043 22.8 4.5 37 220-257 3-42 (157)
432 3u5e_X 60S ribosomal protein L 21.2 1.5E+02 0.0051 21.9 4.7 57 211-270 81-138 (142)
433 2m0o_A PHD finger protein 1; t 21.1 61 0.0021 21.1 2.2 11 251-261 54-64 (79)
434 4a17_R RPL23A, 60S ribosomal p 21.0 1.7E+02 0.0058 21.9 5.0 56 212-270 90-146 (150)
435 2eqj_A Metal-response element- 20.8 63 0.0022 20.5 2.2 10 251-260 41-50 (66)
436 3tqs_A Ribosomal RNA small sub 20.5 2.1E+02 0.0072 23.2 6.2 72 165-243 59-130 (255)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.7e-38 Score=263.94 Aligned_cols=171 Identities=28% Similarity=0.518 Sum_probs=152.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998 5667777
Q ss_pred EeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021788 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (307)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (307)
.++..... ......++|||+|||+.+|+++|+++|+ .||.|.+++|++|. +.++|||||+|.+.++|.+|++.|
T Consensus 90 ~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 90 MWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccccc---ccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 77654322 1223457899999999999999999996 99999999999985 457999999999999999999999
Q ss_pred cCceecCeeEEEEecCCCC
Q 021788 272 NGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 272 ~g~~i~g~~i~v~~a~~k~ 290 (307)
||..|+|+.|+|.|+++++
T Consensus 164 ng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTCEETTEECEEEECCCHH
T ss_pred CCCEECCEEEEEEEcCCCc
Confidence 9999999999999999864
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-37 Score=245.62 Aligned_cols=166 Identities=31% Similarity=0.605 Sum_probs=152.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.++|..+ .+..+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 689999999999999999999999999999999997 588999999999999999999999999999 56778888876
Q ss_pred CCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.... ......++|||+|||..+|+++|+++|+ .||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|||..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 5433 2345678999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCeeEEEEecCC
Q 021788 276 CSSRPMRIDVATP 288 (307)
Q Consensus 276 i~g~~i~v~~a~~ 288 (307)
|+|+.|+|+||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999874
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6e-37 Score=252.94 Aligned_cols=179 Identities=18% Similarity=0.371 Sum_probs=150.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++. ++..+ .++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 456788999999999999999999999999999999999999999999999999999999999986 77777 566777
Q ss_pred EEeccCCCCCCc-ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 191 LNWATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 191 ~~~a~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
+.++........ ......++|||+|||+++|+++|+++|+ .||.|..++|+.++.+|.++|||||+|.+.++|.+|+.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 777664433222 2334568999999999999999999996 99999999999999899999999999999999999996
Q ss_pred HhcCceecCeeEEEEecCCCCCCCc
Q 021788 270 EMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 270 ~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
. +|..|+|+.|+|+|+.++.....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp C-SCCEETTEECEEEECC-------
T ss_pred h-CCcEECCEEEEEEecCChhHhcc
Confidence 5 89999999999999999865543
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-36 Score=255.10 Aligned_cols=177 Identities=20% Similarity=0.392 Sum_probs=156.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4568999999999999999999999999999999999998999999999999999999999999999998 56667777
Q ss_pred eccCCCCCCc------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021788 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 193 ~a~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (307)
++........ ......++|||+|||.++|+++|+++|+ .||.|.+++|+.++.+|+++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 7654322111 1235678999999999999999999996 99999999999999899999999999999999999
Q ss_pred HHHHhcCceecCeeEEEEecCCCCCC
Q 021788 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 267 A~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
|+..|||..|+|+.|+|.|++++...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999987543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-36 Score=242.91 Aligned_cols=165 Identities=25% Similarity=0.497 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
+.++|||+|||+++++++|+++|+.||+|.+|+++.++.+|.++|||||+|.+.++|.+|++.++|..+ .++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 468999999999999999999999999999999999998999999999999999999999999999999 567788888
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
+..... ....++|||+|||..+++++|+++|+ .||.|..+++.+++.++.++|||||+|.+.++|.+|+..|||
T Consensus 80 ~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCSS-----TTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCcc-----cCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 765432 34568999999999999999999996 999999999999988899999999999999999999999999
Q ss_pred ceecC--eeEEEEec
Q 021788 274 VYCSS--RPMRIDVA 286 (307)
Q Consensus 274 ~~i~g--~~i~v~~a 286 (307)
..|+| +.|+|+||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99987 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.6e-36 Score=240.56 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=151.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
.++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 57999999999999999999999999999999999998999999999999999999999999999998 5677888887
Q ss_pred cCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 021788 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (307)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (307)
.... .....++|||+|||..+++++|+++|+ .||.|..+++..++.+|.++|||||+|.+.++|.+|+..|||.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6442 234567899999999999999999996 9999999999999888999999999999999999999999999
Q ss_pred eecCee--EEEEec
Q 021788 275 YCSSRP--MRIDVA 286 (307)
Q Consensus 275 ~i~g~~--i~v~~a 286 (307)
.|+|+. |+|+||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888886
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.3e-35 Score=238.87 Aligned_cols=168 Identities=23% Similarity=0.439 Sum_probs=151.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcCceEEEEeCCHHHHHHHHHHhCCCCC-CCCCCceE
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~g~~~-~~~~~~v~ 190 (307)
+.++|||+|||+++|+++|+++|+.||+|.+|++++++.+| +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999776 8999999999999999999999999765 45578888
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
+.++...... ....++|||+|||+++|+++|+++|+ .||.|.+++|.+++ +|.++|||||+|.+.++|.+|+..
T Consensus 82 ~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 8887654332 23567999999999999999999996 99999999999996 589999999999999999999999
Q ss_pred hcCceec---CeeEEEEecC
Q 021788 271 MNGVYCS---SRPMRIDVAT 287 (307)
Q Consensus 271 l~g~~i~---g~~i~v~~a~ 287 (307)
|||..+. ++.|+|+||.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999974
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.1e-36 Score=244.98 Aligned_cols=166 Identities=26% Similarity=0.505 Sum_probs=147.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++. +..+ .++.+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 568999999999999999999999999999999999998999999999999999999999995 4455 344555555
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
+... ......++|||+|||+++|+++|+++|+ .||.|.+++|..++.+|.++|||||+|.+.++|.+|+. ++|
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 4432 1233567899999999999999999996 99999999999998899999999999999999999997 899
Q ss_pred ceecCeeEEEEecCCCC
Q 021788 274 VYCSSRPMRIDVATPKK 290 (307)
Q Consensus 274 ~~i~g~~i~v~~a~~k~ 290 (307)
..|+|+.|+|+|++||.
T Consensus 151 ~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp ECSSSSCEEEEECCCCC
T ss_pred EEeCCeEEEEeecCCCC
Confidence 99999999999999873
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-33 Score=245.37 Aligned_cols=174 Identities=16% Similarity=0.297 Sum_probs=158.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999998999999999999999999999999999998 567888888
Q ss_pred ccCCCCCCcccCCCCCeEEEcCCCCCC-CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 194 a~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
+....... .....++|||+|||+++ |+++|+++|+ .||.|.+++|+.+. +|.++|+|||+|.+.++|.+|+..||
T Consensus 172 a~~~~~~~--~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLTP--ALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCCT--TTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCc--ccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 87654332 33567899999999996 9999999996 99999999999996 68999999999999999999999999
Q ss_pred CceecCeeEEEEecCCCCCCC
Q 021788 273 GVYCSSRPMRIDVATPKKASG 293 (307)
Q Consensus 273 g~~i~g~~i~v~~a~~k~~~~ 293 (307)
|..|+|+.|+|+|++++..+.
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999999986543
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.2e-33 Score=233.43 Aligned_cols=169 Identities=20% Similarity=0.408 Sum_probs=146.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
..++|||+|||+++|+++|+++|+.| | .|.++++ ++++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 4 5555544 455799999999999999999 7999998
Q ss_pred CCCCCceEEEeccCCCCCC---------------cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC
Q 021788 183 PNTDQPFRLNWATFSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (307)
Q Consensus 183 ~~~~~~v~~~~a~~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~ 247 (307)
.++.+++.++....... .......++|||+|||+.+++++|+++|+ .||.|.+++|..++.+
T Consensus 76 --~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 --QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSAT 152 (198)
T ss_dssp --TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTT
T ss_pred --cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCC
Confidence 66778888876432111 11225668999999999999999999996 9999999999999889
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCC
Q 021788 248 GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 248 ~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|++++..+
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999998654
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.4e-34 Score=234.63 Aligned_cols=167 Identities=19% Similarity=0.307 Sum_probs=146.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEe--CCeEEE
Confidence 4567899999999999999999999999998776 344555688999999999999999999995 999998 578888
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
+.++...... .....++|||+|||+++|+++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|+..
T Consensus 85 v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDSK---KVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCcccc---ccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 8888754332 234668999999999999999999996 89988765 46789999999999999999999999
Q ss_pred hcCceecCeeEEEEecCCCC
Q 021788 271 MNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 271 l~g~~i~g~~i~v~~a~~k~ 290 (307)
|||..|+|+.|+|+|+++|.
T Consensus 156 l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HTEEEETTEEEEEEECSSCC
T ss_pred hCCCEECCeEEEEEecCCCC
Confidence 99999999999999999863
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.6e-33 Score=227.56 Aligned_cols=160 Identities=20% Similarity=0.438 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 181 (307)
.+.++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 677776654 4689999999999999999 899999
Q ss_pred CCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021788 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (307)
Q Consensus 182 ~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~ 261 (307)
+ .++.+++.++.... .....++|||+|||+.+|+++|+++|+ .||.|..++|.+++.+|.++|||||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 8 56677777765332 223478999999999999999999996 999999999999988999999999999999
Q ss_pred HHHHHHHHHhcCceecCeeEEEEecC
Q 021788 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 262 ~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
++|.+|+..|||..|+|+.|+|+||.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999973
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=6.2e-33 Score=241.93 Aligned_cols=167 Identities=23% Similarity=0.407 Sum_probs=145.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
...+.++|||+|||+++|+++|+ ++|+.||.|.+|++++ +|+++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 44678999999999999999977 8999999999999886 688999999999999999999999999998 55
Q ss_pred CceEEEeccCCCCC------------------------------------------------------------------
Q 021788 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (307)
Q Consensus 187 ~~v~~~~a~~~~~~------------------------------------------------------------------ 200 (307)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 77888877643310
Q ss_pred ----------------------------------------CcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEE
Q 021788 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (307)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~ 240 (307)
......+.++|||+|||.++|+++|+++|+ .||.|.+|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001223567899999999999999999996 999999999
Q ss_pred EEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecCC
Q 021788 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATP 288 (307)
Q Consensus 241 i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~~ 288 (307)
|+.++ +|||||+|.+.++|.+|+..|||..|+ |+.|+|.|++.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99664 589999999999999999999999999 99999999863
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.1e-33 Score=233.13 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=138.6
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 114 ETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 114 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
+.++|||+||+ +++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 56899999999 899999999999999999999998753 68999999999999999999999999 55677777
Q ss_pred eccCCCCCC----------------------c----------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCe--eE
Q 021788 193 WATFSGSDR----------------------R----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--KG 238 (307)
Q Consensus 193 ~a~~~~~~~----------------------~----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v--~~ 238 (307)
+++...... . ....++++|||+|||+++|+++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 775322100 0 0013467899999999999999999996 99999 89
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe----eEEEEec
Q 021788 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (307)
Q Consensus 239 i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~----~i~v~~a 286 (307)
++|+.++ +.++|+|||+|++.++|.+||..|||..|+|+ ++.|+|+
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9988875 55679999999999999999999999999877 5777764
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.9e-33 Score=245.20 Aligned_cols=172 Identities=13% Similarity=0.296 Sum_probs=146.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++. |.++|||||+|.+.++|.+|++.|+|..+ .++.+.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999884 88999999999999999999999999999 55788888
Q ss_pred eccCCCCCCcc--cCCCCCeEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEEecCC-CCCcccEEEEEeCCHHHHHHHH
Q 021788 193 WATFSGSDRRT--EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 193 ~a~~~~~~~~~--~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~~d~~-~~~~~g~afV~F~~~~~A~~A~ 268 (307)
++.+....... .....++|||+|||+. +|+++|+++|+ .||.|..|+|+++.. ||.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 88765443332 4456789999999999 99999999996 999999999999876 5899999999999999999999
Q ss_pred HHhcCceecCeeEEEEecCCCC
Q 021788 269 TEMNGVYCSSRPMRIDVATPKK 290 (307)
Q Consensus 269 ~~l~g~~i~g~~i~v~~a~~k~ 290 (307)
.|||..|+|+.|+|.|+++|.
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCCC
T ss_pred -HhcCCEECCcEEEEEEecCCC
Confidence 999999999999999999873
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.2e-32 Score=231.40 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=143.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..+.++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 35678999999999 99999999999999999999999876 58999999999999999999999999 567788
Q ss_pred EEeccCCCCCCc------------------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCC-CeeEE
Q 021788 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (307)
Q Consensus 191 ~~~a~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i 239 (307)
+.++........ ....+.++|||+|||..+++++|+++|+ .|| .|.++
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 887764311100 0123468999999999999999999996 999 99999
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecCCC
Q 021788 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (307)
Q Consensus 240 ~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~~k 289 (307)
+|+.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|+|.|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98653 3689999999999999999999999999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.7e-32 Score=226.75 Aligned_cols=163 Identities=17% Similarity=0.294 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 114 ETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 114 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 358999999999 99999999999999999999999875 58999999999999999999999999 55677777
Q ss_pred eccCCCCCCc------------------------------ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEE
Q 021788 193 WATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKV 241 (307)
Q Consensus 193 ~a~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i 241 (307)
++........ ....++++|||+|||..+++++|+++|+ .|| .|.+++|
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 7764321100 1123478999999999999999999996 999 9999998
Q ss_pred EecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEecCCC
Q 021788 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (307)
Q Consensus 242 ~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~a~~k 289 (307)
+.+ .+|+|||+|.+.++|.+|+..|||..|+ |+.|+|.|++++
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 764 2689999999999999999999999999 999999999875
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.8e-32 Score=235.57 Aligned_cols=158 Identities=19% Similarity=0.345 Sum_probs=145.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEE
Confidence 3568999999999999999999999999 999887 45678999999999999999999999998 56777777
Q ss_pred eccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
++. ..++|||+|||+++|+++|+++|+ .||.|..++|+.++.+|.++|||||+|.+.++|.+|+..||
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 743 457999999999999999999996 99999999999999899999999999999999999999999
Q ss_pred CceecCeeEEEEecCCCCC
Q 021788 273 GVYCSSRPMRIDVATPKKA 291 (307)
Q Consensus 273 g~~i~g~~i~v~~a~~k~~ 291 (307)
|..|+|+.|+|.|+.++..
T Consensus 159 ~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TCEETTEECEEEECCGGGC
T ss_pred CCEeCCcEEEEEECCCCCC
Confidence 9999999999999988653
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=1e-31 Score=231.60 Aligned_cols=159 Identities=26% Similarity=0.525 Sum_probs=144.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..++|..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 4456789999999999999999999999999999999654 58999999999999999999999999 567888
Q ss_pred EEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
+.++. +.++|||+|||+.+|+++|+++|+ .||.|.+|.|+.| .+|+++|||||+|.+.++|.+|+..
T Consensus 90 v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 88875 457899999999999999999996 9999999999999 5799999999999999999999999
Q ss_pred hc-Cceec---CeeEEEEecCCCC
Q 021788 271 MN-GVYCS---SRPMRIDVATPKK 290 (307)
Q Consensus 271 l~-g~~i~---g~~i~v~~a~~k~ 290 (307)
|| +..+. ++.|.|.++.++.
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 95 44554 9999999999874
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.3e-31 Score=232.14 Aligned_cols=165 Identities=12% Similarity=0.241 Sum_probs=138.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++|+++|+++|+.||+|.+|+++.+.. + ++|||||+|.+.++|.+|++ ++|..+ .++.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVV--GQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcEE
Confidence 3456789999999999999999999999999999999999873 3 57999999999999999995 899988 56677
Q ss_pred EEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021788 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (307)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (307)
.+.++ ..++|||+|||+.+++++|+++|+ .|| .|..++|+.++. +.++|||||+|.+.++|.+|+
T Consensus 111 ~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 111 IVSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp EEEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred EEEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 77765 467999999999999999999996 999 999999999876 889999999999999999999
Q ss_pred HHhcCceecCeeEEEEecCCCCCCC
Q 021788 269 TEMNGVYCSSRPMRIDVATPKKASG 293 (307)
Q Consensus 269 ~~l~g~~i~g~~i~v~~a~~k~~~~ 293 (307)
..|||..|+|+.|+|.|+.++....
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSK 201 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC----
T ss_pred HHhCCCEeCCcEEEEEECCCCcccc
Confidence 9999999999999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=6.7e-26 Score=180.47 Aligned_cols=148 Identities=24% Similarity=0.320 Sum_probs=116.8
Q ss_pred EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC-----CCceEEEecc-CCCCCCcccCCCCCeEEEcCCC
Q 021788 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT-----DQPFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (307)
Q Consensus 144 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~-----~~~v~~~~a~-~~~~~~~~~~~~~~~l~v~nlp 217 (307)
.++++.+.. +++|||||+|.+.++|++|++.+++...... .......... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777653 6899999999999999999988775332111 1111111111 1111222334557899999999
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCCCc
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
+++|+++|+++|+ .||.|.+|+|++|+.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+++++.+..
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 155 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 155 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 9999999999996 999999999999998999999999999999999999999999999999999999998765443
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=4.2e-24 Score=168.53 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=112.3
Q ss_pred CCcCceEEEEeCCHHHHHHHHHHh-CCCCCCCCCCceEEEeccCCC-----------CCCcccCCCCCeEEEcCCCCCCC
Q 021788 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (307)
Q Consensus 154 g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~~v~~~~a~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t 221 (307)
...+|+++|+|.+.++|++|++.+ +|..++| .+++.++.... ..........++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9999965 78888776421 12223445678999999999999
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCC
Q 021788 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (307)
Q Consensus 222 ~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~ 291 (307)
+++|+++|+ .||.|.+|+|+++ ++|||||+|.+.++|.+|+..|||..|+|+.|+|+|++++++
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~r 150 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 150 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCCC
Confidence 999999996 9999999999876 579999999999999999999999999999999999998753
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=150.24 Aligned_cols=81 Identities=30% Similarity=0.536 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .||.|.+++|++|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 021788 287 TP 288 (307)
Q Consensus 287 ~~ 288 (307)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 87
No 24
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=6.5e-23 Score=158.54 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=85.3
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE
Q 021788 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238 (307)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~ 238 (307)
+.|++|.+...+..|+..++|....+.+ ...+. .........++|||+|||+++|+++|+++|+ .||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~-----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYG-----RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGD 76 (135)
T ss_dssp --------------------------------CCSC-----CSCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcC-----CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEE
Confidence 6789999999999999999887654332 11222 2223345678999999999999999999996 9999999
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCCCc
Q 021788 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 239 i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+++++....
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 99999988999999999999999999999999999999999999999998865544
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.1e-22 Score=151.48 Aligned_cols=107 Identities=24% Similarity=0.427 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
...+|||+|||+++|+++|+++|+.||.|.+|+|+.|+ +.++|||||+|.+.++|.+|++.|+|..+ .++.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 35689999999999999999999999999999999986 45899999999999999999999999999 567888888
Q ss_pred ccCCCCCCc---ccCCCCCeEEEcCCCCCCCHHH
Q 021788 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (307)
Q Consensus 194 a~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~ 224 (307)
+........ ......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 775443222 2233456799999999999874
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=146.09 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc-CceecCeeEEEEe
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPMRIDV 285 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~-g~~i~g~~i~v~~ 285 (307)
+++|||+|||+++|+++|+++|+ .|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++ +..|+|+.|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999996 999 89999999999999999999999999999999998875 5689999999999
Q ss_pred cCCCCCC
Q 021788 286 ATPKKAS 292 (307)
Q Consensus 286 a~~k~~~ 292 (307)
|+|+...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=145.21 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.+.++|||+||++++++++|+++|+ +||.|.+|+|++|+.+++++|||||+|++.++|.+|+..|||..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4678999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021788 286 ATPKK 290 (307)
Q Consensus 286 a~~k~ 290 (307)
+..++
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 98764
No 28
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.5e-21 Score=156.30 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=80.9
Q ss_pred EEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCC---------------CCCCcccCCCCCeEEEcCCCCCCCHHHHH
Q 021788 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---------------GSDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (307)
Q Consensus 162 V~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~---------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 226 (307)
.+|.+.++|+.++..+++......++.+...+.... ...........++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999988777655555554442211 11111223456789999999999999999
Q ss_pred HHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCCCcc
Q 021788 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295 (307)
Q Consensus 227 ~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~~~ 295 (307)
++|+ .||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.|+.++..+...
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVK 158 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-----
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCCC
Confidence 9996 9999999999999999999999999999999999999999999999999999999987655443
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.2e-21 Score=139.07 Aligned_cols=88 Identities=20% Similarity=0.432 Sum_probs=82.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+.+|+++|+++|+ .||.|.+++|..++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999996 99999999999997 8999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 021788 284 DVATPKKASG 293 (307)
Q Consensus 284 ~~a~~k~~~~ 293 (307)
.|++++..++
T Consensus 91 ~~a~~~~~~g 100 (100)
T 2do4_A 91 AISNSGPSSG 100 (100)
T ss_dssp EECCCCSCCC
T ss_pred EECCCCCCCC
Confidence 9999987653
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=141.07 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCC--eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc----eecCe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSR 279 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~--v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~i~g~ 279 (307)
..-.+|||+|||+.+|+++|+++|+ +||. |.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||. .|+||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 4567999999999999999999996 9995 679999999999999999999999999999999999996 58999
Q ss_pred eEEEEecCC
Q 021788 280 PMRIDVATP 288 (307)
Q Consensus 280 ~i~v~~a~~ 288 (307)
.|+|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=5.4e-21 Score=135.05 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=78.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.+|||+|||.++++++|+++|+ .||.|.+++|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999996 999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 021788 289 KK 290 (307)
Q Consensus 289 k~ 290 (307)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=138.39 Aligned_cols=88 Identities=32% Similarity=0.639 Sum_probs=82.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.++++|||+|||+++|+++|+++|+ .||.|..++|++++.++.++|||||+|++.++|.+|+..|||..|+|+.|+|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 021788 286 ATPKKASGY 294 (307)
Q Consensus 286 a~~k~~~~~ 294 (307)
++++...+.
T Consensus 82 a~~~~~~~~ 90 (95)
T 2dnz_A 82 VTERLDGGS 90 (95)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 999876553
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.5e-21 Score=140.76 Aligned_cols=91 Identities=26% Similarity=0.442 Sum_probs=84.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
.+..+.++|||+|||+++|+++|+++|+ .||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3455778999999999999999999996 999999999999998999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++..++.
T Consensus 89 v~~a~~~~~~~~ 100 (103)
T 2cq0_A 89 VEWAKPSTNSGP 100 (103)
T ss_dssp EEESSCCCCSCC
T ss_pred EEECCCCCCCCC
Confidence 999999876543
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.8e-20 Score=140.82 Aligned_cols=92 Identities=30% Similarity=0.615 Sum_probs=84.8
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 202 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
..+....++|||+|||+.+|+++|+++|+ .||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456788999999999999999999996 99999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCc
Q 021788 282 RIDVATPKKASGY 294 (307)
Q Consensus 282 ~v~~a~~k~~~~~ 294 (307)
+|+|++++.....
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999998865543
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=136.61 Aligned_cols=83 Identities=35% Similarity=0.675 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.+.++|||+|||.++++++|+++|+ .||.|.+++|..++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567999999999999999999996 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 021788 286 ATPK 289 (307)
Q Consensus 286 a~~k 289 (307)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9886
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=7.2e-21 Score=143.05 Aligned_cols=90 Identities=26% Similarity=0.419 Sum_probs=83.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999999999999999996 9999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
+|++++..+..
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99999866543
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.4e-21 Score=138.74 Aligned_cols=88 Identities=26% Similarity=0.364 Sum_probs=82.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999996 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021788 285 VATPKKASG 293 (307)
Q Consensus 285 ~a~~k~~~~ 293 (307)
|++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999986654
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.4e-21 Score=138.49 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=82.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+.+++++|+++|+ .||.|..|+|++++.++.++|||||+|++.++|.+|+. ||+..|+|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45678999999999999999999996 99999999999999999999999999999999999998 99999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++..+..
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2dgs_A 85 RAEPRDSKSS 94 (99)
T ss_dssp ECCCCCCCCC
T ss_pred ECCCCcccCC
Confidence 9999876554
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=6.5e-21 Score=138.53 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
++++|||+|||.++++++|+++|+ .||.|.+++|..++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 467999999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
+++..
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 98754
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.9e-21 Score=139.67 Aligned_cols=90 Identities=24% Similarity=0.486 Sum_probs=84.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
|+++++.+...
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 2cqb_A 88 LAKPMRIKESG 98 (102)
T ss_dssp ECCCCCCCCCC
T ss_pred eCCCCCCCCCC
Confidence 99998766543
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=138.70 Aligned_cols=88 Identities=32% Similarity=0.663 Sum_probs=82.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i-~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
.+.++|||+|||+.+|+++|+++|+ .||.|.++ +|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3678999999999999999999996 99999999 999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++..++.
T Consensus 82 ~a~~~~~~~~ 91 (96)
T 1x5t_A 82 YAFKKDSKGS 91 (96)
T ss_dssp ESCCCCCCCC
T ss_pred EecccCCCCC
Confidence 9999876654
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=141.18 Aligned_cols=87 Identities=29% Similarity=0.663 Sum_probs=82.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||..+|+++|+++|+ .||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 021788 283 IDVATPKK 290 (307)
Q Consensus 283 v~~a~~k~ 290 (307)
|+|++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99999875
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=140.01 Aligned_cols=90 Identities=23% Similarity=0.373 Sum_probs=83.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
+|+++++....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99998765544
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=139.25 Aligned_cols=90 Identities=28% Similarity=0.475 Sum_probs=83.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+.+|+++|+++|+ .||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455778999999999999999999996 999999999999998999999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 021788 283 IDVATPKKASG 293 (307)
Q Consensus 283 v~~a~~k~~~~ 293 (307)
|+|++++..+.
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99999886543
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=135.60 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=80.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+.++|||+|||+.+++++|+++|+ .||.|.+++|+.++.++.++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 021788 283 IDVATP 288 (307)
Q Consensus 283 v~~a~~ 288 (307)
|+|+++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=138.67 Aligned_cols=83 Identities=27% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|+.||+|.+|++++|+.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V 93 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKV 93 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999 5678899
Q ss_pred EeccC
Q 021788 192 NWATF 196 (307)
Q Consensus 192 ~~a~~ 196 (307)
.|+++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99864
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=139.36 Aligned_cols=90 Identities=18% Similarity=0.443 Sum_probs=83.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc------Cceec
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~------g~~i~ 277 (307)
...+.++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.++.++|||||+|.+.++|.+|+..|| +..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999996 99999999999999999999999999999999999999999 99999
Q ss_pred CeeEEEEecCCCCCCCc
Q 021788 278 SRPMRIDVATPKKASGY 294 (307)
Q Consensus 278 g~~i~v~~a~~k~~~~~ 294 (307)
|+.|+|+|++++.....
T Consensus 90 g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SCEEEEECCCCCCCCCC
T ss_pred CEEEEEEECCCCccCCC
Confidence 99999999999865543
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.3e-20 Score=133.75 Aligned_cols=82 Identities=26% Similarity=0.515 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++++++|+++|+ .||.|.+++|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999996 99999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q 021788 285 VAT 287 (307)
Q Consensus 285 ~a~ 287 (307)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.1e-20 Score=137.21 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=82.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC---ee
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS---RP 280 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g---~~ 280 (307)
.....++|||+|||+.+++++|+++|+ .||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.| +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345678999999999999999999996 99999999999997 69999999999999999999999999999988 99
Q ss_pred EEEEecCCCCCCCc
Q 021788 281 MRIDVATPKKASGY 294 (307)
Q Consensus 281 i~v~~a~~k~~~~~ 294 (307)
|+|+|++++..+..
T Consensus 89 l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 89 LVVKFADTDKESGP 102 (105)
T ss_dssp CEEEESCSSCCCSC
T ss_pred EEEEECccCcccCC
Confidence 99999999876543
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=138.21 Aligned_cols=89 Identities=33% Similarity=0.559 Sum_probs=83.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|+|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44678999999999999999999996 99999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 1x5s_A 88 QAGKSSDNRS 97 (102)
T ss_dssp EEECCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998865543
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=144.59 Aligned_cols=91 Identities=21% Similarity=0.431 Sum_probs=84.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.|++|+|++++.+++++|||||+|++.++|.+|+..|||..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCcc
Q 021788 284 DVATPKKASGYQ 295 (307)
Q Consensus 284 ~~a~~k~~~~~~ 295 (307)
+|++++..+...
T Consensus 117 ~~a~~~~~~~~~ 128 (139)
T 1u6f_A 117 ALAASGHQRPGI 128 (139)
T ss_dssp EESSCCCCCCCS
T ss_pred EECCCCCCCCCC
Confidence 999998665443
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=137.17 Aligned_cols=88 Identities=17% Similarity=0.372 Sum_probs=81.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~---~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
.+.++|||+|||+++|+++|+++|+ .||.|..|+|..++. ++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4678999999999999999999996 999999999999876 668999999999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++.....
T Consensus 82 V~~a~~~~~~~~ 93 (98)
T 2cpf_A 82 VRISERATKPAS 93 (98)
T ss_dssp EECSSCSSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999999866544
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.2e-20 Score=140.58 Aligned_cols=88 Identities=22% Similarity=0.408 Sum_probs=82.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+.+|+++|+++|+ .||.|.+++|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 021788 284 DVATPKKAS 292 (307)
Q Consensus 284 ~~a~~k~~~ 292 (307)
.|++++..+
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999987654
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.8e-21 Score=138.72 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G--~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.+|||+|||+++|+++|+++|+ .|| .|.+++|+.|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999996 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 98754
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=139.34 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=81.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+.+++++|+++|+ .||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 45678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021788 285 VATPKKA 291 (307)
Q Consensus 285 ~a~~k~~ 291 (307)
|++++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9998753
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=134.33 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=78.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+++++++|+++|+ .||.|.+++|..++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 021788 284 DVAT 287 (307)
Q Consensus 284 ~~a~ 287 (307)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=1.2e-20 Score=144.53 Aligned_cols=88 Identities=25% Similarity=0.439 Sum_probs=82.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+.++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.++.++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455778999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 021788 283 IDVATPKKA 291 (307)
Q Consensus 283 v~~a~~k~~ 291 (307)
|+|+++++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999998764
No 58
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=137.79 Aligned_cols=90 Identities=18% Similarity=0.349 Sum_probs=83.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh-cCceecCee
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRP 280 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d-~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~i~g~~ 280 (307)
......++|||+|||+.+|+++|+++|+ .||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| |+..|+|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 3455778999999999999999999996 9999999999999 788999999999999999999999999 999999999
Q ss_pred EEEEecCCCCCCC
Q 021788 281 MRIDVATPKKASG 293 (307)
Q Consensus 281 i~v~~a~~k~~~~ 293 (307)
|+|+|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.1e-20 Score=138.40 Aligned_cols=90 Identities=18% Similarity=0.407 Sum_probs=83.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee---cCee
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i---~g~~ 280 (307)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|+.|+.++.++|||||+|.+.++|.+|+..|||..+ .|+.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345678999999999999999999996 999999999999999999999999999999999999999999987 8999
Q ss_pred EEEEecCCCCCCCc
Q 021788 281 MRIDVATPKKASGY 294 (307)
Q Consensus 281 i~v~~a~~k~~~~~ 294 (307)
|+|+|++++..+..
T Consensus 88 l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 88 IQVKPADSESRGGS 101 (106)
T ss_dssp CEEEECCCCSCCCC
T ss_pred EEEEECCcccccCC
Confidence 99999999875543
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=139.01 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=83.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~--------~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.....++|||+|||+++|+++|+++|+ .||.|. .|+|+.++.+++++|||||+|.+.++|.+|+..|||..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 455778999999999999999999996 999999 69999999999999999999999999999999999999
Q ss_pred ecCeeEEEEecCCCCCCCc
Q 021788 276 CSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 276 i~g~~i~v~~a~~k~~~~~ 294 (307)
|+|+.|+|+|++++.....
T Consensus 90 ~~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp ETTEECEEECSSCCCCSTT
T ss_pred cCCCEEEEEECCCCCCCCC
Confidence 9999999999999876543
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=136.39 Aligned_cols=89 Identities=30% Similarity=0.603 Sum_probs=82.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+.+|+++|+++|+ .||.|.+|+|+.+ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445778999999999999999999996 9999999999998 789999999999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++..+..
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 999999876544
No 62
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=3.7e-20 Score=136.35 Aligned_cols=88 Identities=19% Similarity=0.451 Sum_probs=81.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+++++++|+++|+ .|| |.+|+|++++.+++++|||||+|++.++|.+|+ .|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 345678999999999999999999996 997 999999999999999999999999999999999 99999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
.|++++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dng_A 88 DIAEGRKQDKS 98 (103)
T ss_dssp EECCCCCCCCS
T ss_pred EEecCCCCCCC
Confidence 99999866543
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=135.35 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=78.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~--------i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
...+.++|||+|||+++|+++|+++|+ .||.|.. ++|+.++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 445678999999999999999999996 9999999 9999999999999999999999999999999999999
Q ss_pred ecCeeEEEEecC
Q 021788 276 CSSRPMRIDVAT 287 (307)
Q Consensus 276 i~g~~i~v~~a~ 287 (307)
|+|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999975
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=136.56 Aligned_cols=88 Identities=23% Similarity=0.428 Sum_probs=81.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
...+.++|||+|||+++|+++|+++|+ .|| |.+|+|++++.+ ++++|||||+|.+.++|.+|| .||+..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 345678999999999999999999996 999 999999999887 999999999999999999999 9999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++..+..
T Consensus 88 V~~a~~~~~~~~ 99 (104)
T 1wi8_A 88 VDVADQAQDKDS 99 (104)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEccCCCCCCC
Confidence 999999876654
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=135.96 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee-EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee---
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP--- 280 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~-~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~--- 280 (307)
....++|||+|||+++++++|+++|+ .||.|. +++|++|+.++.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999999999999999996 999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEecCCCCC
Q 021788 281 -MRIDVATPKKA 291 (307)
Q Consensus 281 -i~v~~a~~k~~ 291 (307)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999998754
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.3e-20 Score=140.22 Aligned_cols=82 Identities=29% Similarity=0.551 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
..+|||+|||+++|+++|+++|+ .||.|.+|+|++|+ +.++|||||+|++.++|.+||..|||..|+|+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56899999999999999999996 99999999999985 4579999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021788 288 PKKAS 292 (307)
Q Consensus 288 ~k~~~ 292 (307)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87544
No 67
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=137.23 Aligned_cols=90 Identities=50% Similarity=0.853 Sum_probs=83.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhh-CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce-ecCeeE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPM 281 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~-i~g~~i 281 (307)
+..+.++|||+|||+++|+++|+++|+ . ||.|.+|+|++++ ++.++|||||+|.+.++|.+|+..|||.. |+|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 345678999999999999999999996 8 9999999999998 89999999999999999999999999999 999999
Q ss_pred EEEecCCCCCCCcc
Q 021788 282 RIDVATPKKASGYQ 295 (307)
Q Consensus 282 ~v~~a~~k~~~~~~ 295 (307)
+|+|++++..+...
T Consensus 83 ~v~~a~~~~~~~~~ 96 (104)
T 2dhg_A 83 RLSVAIPKASRVKP 96 (104)
T ss_dssp CCCBCCCCCSCCCC
T ss_pred EEEEccCCCcCCCC
Confidence 99999988665543
No 68
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=136.40 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~i~ 282 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|+..|++ ..|+|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 44678999999999999999999996 9999999999875 68999999999999999998864 789999999
Q ss_pred EEecCCCCCCCcc
Q 021788 283 IDVATPKKASGYQ 295 (307)
Q Consensus 283 v~~a~~k~~~~~~ 295 (307)
|.|++++..+..+
T Consensus 86 V~~A~~~~~~~~~ 98 (105)
T 1sjq_A 86 IQFSNHKELKTDS 98 (105)
T ss_dssp BCCCSSSSCCCTT
T ss_pred EEEcCCCCCCccc
Confidence 9999988666544
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=3.5e-21 Score=141.03 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC-
Q 021788 206 CSDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS- 278 (307)
Q Consensus 206 ~~~~~l~v~nlp~------~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g- 278 (307)
..+++|||+|||+ ++++++|+++|+ .||.|.+|+|++|+.+|+++|||||+|.+.++|.+|+..|||..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 999999999996 99999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCC
Q 021788 279 RPMRIDVATPKK 290 (307)
Q Consensus 279 ~~i~v~~a~~k~ 290 (307)
+.|+|+++++++
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999998753
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=131.57 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .| .|.+++|+++ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44678999999999999999999996 99 9999999999 779999999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 021788 285 VATPKKASG 293 (307)
Q Consensus 285 ~a~~k~~~~ 293 (307)
+++++..++
T Consensus 83 ~a~~~~~sG 91 (91)
T 2dgw_A 83 REKSGPSSG 91 (91)
T ss_dssp EESSCCCCC
T ss_pred ECCcCCCCC
Confidence 999986543
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=138.90 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.+|.|..++ ++.++|||||+|++.++|.+|+..|||..|+|+.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999996 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99987543
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=132.90 Aligned_cols=90 Identities=19% Similarity=0.423 Sum_probs=81.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+++|+++|+++|+ .||.|.+|+|+.++. .++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999864 3899999999999999999999999999999999
Q ss_pred EEecCCCCCCCcc
Q 021788 283 IDVATPKKASGYQ 295 (307)
Q Consensus 283 v~~a~~k~~~~~~ 295 (307)
|+|++++..+...
T Consensus 87 v~~a~~~~~~~~~ 99 (103)
T 2cq3_A 87 VNNATARVMTNSG 99 (103)
T ss_dssp EEECCSSCCCCCS
T ss_pred EEEcccCCCCCCC
Confidence 9999998766543
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=132.54 Aligned_cols=84 Identities=21% Similarity=0.403 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~-~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..++|||+|||+++|+++|+++|+ .||.|.++.|..++.++. ++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999996 999999999999987665 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021788 286 ATPKKA 291 (307)
Q Consensus 286 a~~k~~ 291 (307)
+.++..
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 988754
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=140.46 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 446678999999999999999999999999999999999998999999999999999999999999999998 567899
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 75
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=136.77 Aligned_cols=90 Identities=26% Similarity=0.378 Sum_probs=83.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+.+++++|+++|+ .||.|..|+|++++.++.++|||||+|++.++|.+|+.. |+..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 3456778999999999999999999996 999999999999999999999999999999999999988 99999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|++++++.....
T Consensus 89 V~~a~~~~~~~~ 100 (105)
T 2dh8_A 89 PKPCTPRGMQPS 100 (105)
T ss_dssp CCCSCCSSCCTT
T ss_pred EEEccCCCCCCC
Confidence 999999875543
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=144.83 Aligned_cols=89 Identities=16% Similarity=0.326 Sum_probs=82.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE--EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc----eec
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCS 277 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~--i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~i~ 277 (307)
.....++|||+|||+++|+++|+++|+ .||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .|+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 345678999999999999999999996 9999977 99999999999999999999999 999999999999 999
Q ss_pred CeeEEEEecCCCCCCCc
Q 021788 278 SRPMRIDVATPKKASGY 294 (307)
Q Consensus 278 g~~i~v~~a~~k~~~~~ 294 (307)
|+.|+|+|++++++...
T Consensus 97 gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDMA 113 (131)
T ss_dssp GCCCCCEECCCSCCCCC
T ss_pred CEEEEEEECCCCCCCCC
Confidence 99999999999865544
No 77
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.9e-20 Score=137.24 Aligned_cols=88 Identities=30% Similarity=0.477 Sum_probs=81.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+.+|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|++ .|+|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3455778999999999999999999996 999999999999999999999999999999999999999998 89999999
Q ss_pred EEecCCCCCC
Q 021788 283 IDVATPKKAS 292 (307)
Q Consensus 283 v~~a~~k~~~ 292 (307)
|+|++++...
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876433
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=5.5e-20 Score=136.76 Aligned_cols=88 Identities=28% Similarity=0.449 Sum_probs=77.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..+ +..|+|+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 3445678999999999999999999996 9999999999999999999999999999999999999876 5999999999
Q ss_pred EEecCCCCCC
Q 021788 283 IDVATPKKAS 292 (307)
Q Consensus 283 v~~a~~k~~~ 292 (307)
|+++.++..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999998654
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=132.86 Aligned_cols=88 Identities=24% Similarity=0.442 Sum_probs=79.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+.+++++|+++|+ .||.|.+|+|++++. .++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3455778999999999999999999996 999999999999854 3689999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 021788 283 IDVATPKKASG 293 (307)
Q Consensus 283 v~~a~~k~~~~ 293 (307)
|+|++++..++
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2cqi_A 87 VNWATTPSSQK 97 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEECCCCcccc
Confidence 99999876544
No 80
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=146.69 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G--~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..++|||+|||+++|+++|+++|+ .|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||..|||..|+|+.|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
+++++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998764
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=6.2e-20 Score=131.33 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .||.|.+++|..++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 357899999999999999999996 9999999999999989999999999999999999999 99999999999999999
Q ss_pred CCCC
Q 021788 287 TPKK 290 (307)
Q Consensus 287 ~~k~ 290 (307)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 8864
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.5e-20 Score=139.90 Aligned_cols=84 Identities=29% Similarity=0.495 Sum_probs=78.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 021788 283 IDVAT 287 (307)
Q Consensus 283 v~~a~ 287 (307)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99975
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=138.19 Aligned_cols=88 Identities=33% Similarity=0.549 Sum_probs=82.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+.+++++|+++|+ .||.|..++|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457999999999999999999996 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc
Q 021788 287 TPKKASGYQ 295 (307)
Q Consensus 287 ~~k~~~~~~ 295 (307)
+++..+...
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 998665443
No 84
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-19 Score=131.79 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=81.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+.++|||+|||+.+++++|+++|+ .||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ++..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3455778999999999999999999996 99999999999999999999999999999999999997 57899999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++.....
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cqg_A 87 CKLPNSKQSQDS 98 (103)
T ss_dssp EECCCTTCCCCC
T ss_pred EEecCCCCcCCC
Confidence 999999866543
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=131.94 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
...++|||+|||+++++++|+ ++|+ .||.|.+|+|+.|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 356799999999999999999 9996 9999999999999765 8899999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 021788 282 RIDVATPKKAS 292 (307)
Q Consensus 282 ~v~~a~~k~~~ 292 (307)
+|+|++++..+
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999887543
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=1.1e-20 Score=173.28 Aligned_cols=90 Identities=22% Similarity=0.467 Sum_probs=84.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+.+|+++|.++|+ .||.|+.|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999999999999999996 99999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
|+.++..+++.
T Consensus 178 ~a~~~~~~~~~ 188 (437)
T 3pgw_S 178 VERGRTVKGWR 188 (437)
T ss_pred EeCCCCCCCCC
Confidence 99988766553
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.3e-19 Score=143.73 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=82.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+.+|+++|+++|+ .||.|..|+|+.++.++.++|||||+|++.++|.+||..||+..|+|+.|+|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021788 285 VATPKKASG 293 (307)
Q Consensus 285 ~a~~k~~~~ 293 (307)
|++++....
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 999875433
No 88
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-20 Score=133.81 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++++++|+++|+ .||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44568999999999999999999996 99999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 998654
No 89
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=134.28 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=81.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ ++.++|||||+|++.++|.+|+..|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345678999999999999999999996 99999999999997 5899999999999999999999999999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
+|+++...+..
T Consensus 89 ~~a~~~~~~~~ 99 (114)
T 2do0_A 89 KMDERALPKGD 99 (114)
T ss_dssp EECSCCCCCSC
T ss_pred EEcccCCCCCC
Confidence 99987654443
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=130.81 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=76.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCee
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRP 280 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~ 280 (307)
....++++|||+|||+++|+++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|+..|+ +..|.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 3445788999999999999999999996 9999999998864 6899999999999999999875 67899999
Q ss_pred EEEEecCCCCCCCcc
Q 021788 281 MRIDVATPKKASGYQ 295 (307)
Q Consensus 281 i~v~~a~~k~~~~~~ 295 (307)
|+|.|++++..+...
T Consensus 83 l~V~~a~~~~~~~~~ 97 (101)
T 2cq1_A 83 IYIQYSNHKELKTSG 97 (101)
T ss_dssp CEEEECSCSSCCCCC
T ss_pred EEEEEcCcccCcCCC
Confidence 999999988766543
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=131.45 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce--ecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--i~g~~i~ 282 (307)
..++++|||+|||+++|+++|+++|+ +||.|.++++++ .||||||+|++.++|.+|++.|++.. |+|+.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 45788999999999999999999996 999999999885 36899999999999999999999865 7899999
Q ss_pred EEecCCCC
Q 021788 283 IDVATPKK 290 (307)
Q Consensus 283 v~~a~~k~ 290 (307)
|.||++|+
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99999875
No 92
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=135.56 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=75.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~i 281 (307)
...++++|||+|||+++|+++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|+..|++ ..|+|+.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 345678999999999999999999996 9999999999875 68999999999999999999984 68999999
Q ss_pred EEEecCCCCCCCc
Q 021788 282 RIDVATPKKASGY 294 (307)
Q Consensus 282 ~v~~a~~k~~~~~ 294 (307)
+|.|+++++.+..
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9999998876653
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=7.5e-20 Score=139.74 Aligned_cols=89 Identities=22% Similarity=0.420 Sum_probs=82.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+.+|+++|+++|+ .||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344678999999999999999999996 9999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 021788 284 DVATPKKASG 293 (307)
Q Consensus 284 ~~a~~k~~~~ 293 (307)
.|++++..++
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998775543
No 94
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=131.96 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=77.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+.+++++|+++|+ .||.|.+|+|..++. +.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999996 999999999999976 899999999999999999999999999999999999
Q ss_pred EecCC
Q 021788 284 DVATP 288 (307)
Q Consensus 284 ~~a~~ 288 (307)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.3e-19 Score=130.46 Aligned_cols=85 Identities=27% Similarity=0.438 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++++++|+++|+ .||.|.+++|.++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999996 9999999999985 68899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99987643
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2.9e-19 Score=136.04 Aligned_cols=86 Identities=28% Similarity=0.428 Sum_probs=80.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+.+++++|+++|+ .||.|.+|+|..++ +|+++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999996 99999999999998 8999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 021788 284 DVATPKKA 291 (307)
Q Consensus 284 ~~a~~k~~ 291 (307)
+||.++..
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99998653
No 97
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=137.68 Aligned_cols=86 Identities=23% Similarity=0.404 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
...++|||+|||+++|+++|+++|+ .||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|+|+.|+|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 4468999999999999999999996 999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCCCCCC
Q 021788 286 ATPKKASG 293 (307)
Q Consensus 286 a~~k~~~~ 293 (307)
++++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99986654
No 98
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=132.85 Aligned_cols=86 Identities=21% Similarity=0.446 Sum_probs=78.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.|..|+|..+ +.++|||||+|++.++|.+|++.||+..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999996 9999999999654 568999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 021788 284 DVATPKKASG 293 (307)
Q Consensus 284 ~~a~~k~~~~ 293 (307)
+|+++++...
T Consensus 94 ~~a~~~~~~~ 103 (109)
T 1x4a_A 94 EFPRSGRGTG 103 (109)
T ss_dssp ECCCCCCCCC
T ss_pred EEcccCCCCC
Confidence 9999886544
No 99
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2e-19 Score=133.23 Aligned_cols=83 Identities=31% Similarity=0.466 Sum_probs=78.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+.+|+++|+++|+ .||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999999999999996 99999999999998 8999999999999999999999999999999999999
Q ss_pred EecCC
Q 021788 284 DVATP 288 (307)
Q Consensus 284 ~~a~~ 288 (307)
+|++.
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=2.2e-19 Score=127.88 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.+++|+.++.+|+++|||||+|.+.++|.+|+ .+++..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 45678999999999999999999996 9999999999999999999999999999999999999 568889999999999
Q ss_pred ec
Q 021788 285 VA 286 (307)
Q Consensus 285 ~a 286 (307)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 101
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=134.15 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.++|||+||++++++++|+++|+.||.|.+|+|+.|+.+|+++|||||+|.+.++|.+|++.|||..+ .++.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999 56777887
Q ss_pred eccC
Q 021788 193 WATF 196 (307)
Q Consensus 193 ~a~~ 196 (307)
++..
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7753
No 102
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=6.4e-20 Score=132.96 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
...++|||+|||+++|+++|+++|+ .||.|..++++.++.+++++|||||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3468999999999999999999996 999999999999989999999999999999999999999999999999999999
Q ss_pred cCC
Q 021788 286 ATP 288 (307)
Q Consensus 286 a~~ 288 (307)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 103
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-20 Score=131.54 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
.+.++|||+|||+++++++|+++|+ .||.|.+++|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4678999999999999999999996 999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 021788 286 AT 287 (307)
Q Consensus 286 a~ 287 (307)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=135.10 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=75.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
.....++|||+|||+++++++|+++|+ .|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 345678999999999999999999996 999 9999999998 58999999999999999999999 9999999999999
Q ss_pred EEecCCCC
Q 021788 283 IDVATPKK 290 (307)
Q Consensus 283 v~~a~~k~ 290 (307)
|++++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998864
No 105
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=133.86 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhhhCCCeeEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~---~~F~~~~G~v~~i~i~~d~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 278 (307)
....++|||+|||+++++++|+ ++|+ .||.|.+|+|.+++.++ +++|||||+|++.++|.+|+..|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3456899999999999999999 9996 99999999999987654 556999999999999999999999999999
Q ss_pred eeEEEEecCCCCCCC
Q 021788 279 RPMRIDVATPKKASG 293 (307)
Q Consensus 279 ~~i~v~~a~~k~~~~ 293 (307)
+.|+|.|++++....
T Consensus 91 r~l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 91 RTLKASLGTTKYCSY 105 (111)
T ss_dssp EEEEEESCCCCSCSS
T ss_pred EEEEEEecccccccc
Confidence 999999999987433
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=129.63 Aligned_cols=87 Identities=30% Similarity=0.519 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 456788999999999999999999999999999999999998999999999999999999999999999998 568888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 888876543
No 107
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2e-19 Score=125.53 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.+..|+|+||++.+||++|+++|. .||.|.++++.. ++|||||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999996 999999999864 6899999999999999999999999999999999998
Q ss_pred C
Q 021788 287 T 287 (307)
Q Consensus 287 ~ 287 (307)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=129.95 Aligned_cols=88 Identities=30% Similarity=0.509 Sum_probs=79.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+.++|||+|||+++|+++|+++|+ .| ..++++.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456778999999999999999999996 66 4788888988999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++...+.
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 2fc8_A 86 LDWAKPKGEGGS 97 (102)
T ss_dssp EEECCCCCSSSC
T ss_pred EEEecCCCCCCC
Confidence 999999876554
No 109
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=133.28 Aligned_cols=85 Identities=20% Similarity=0.447 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||.++|+++|+++|+ .||.|.+++|.+++ +.++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455778999999999999999999996 99999999999985 35899999999999999999999999999999999
Q ss_pred EEecCCCC
Q 021788 283 IDVATPKK 290 (307)
Q Consensus 283 v~~a~~k~ 290 (307)
|+|++++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99999863
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2.6e-19 Score=136.37 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 468999999999999999999996 9999999999999989999999999999999999999 89999999999999999
Q ss_pred CCCCCCC
Q 021788 287 TPKKASG 293 (307)
Q Consensus 287 ~~k~~~~ 293 (307)
++.....
T Consensus 113 ~~~~~~~ 119 (124)
T 2jwn_A 113 RTNMPGI 119 (124)
T ss_dssp SCCCSSC
T ss_pred CCCCCCC
Confidence 9875443
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=132.77 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.+|+|++|+. |.++|||||+|++.++|.+|+. +++..|+|+.|+|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 34568999999999999999999996 999999999999987 9999999999999999999998 99999999999999
Q ss_pred ecCC
Q 021788 285 VATP 288 (307)
Q Consensus 285 ~a~~ 288 (307)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=7.8e-19 Score=131.83 Aligned_cols=90 Identities=27% Similarity=0.534 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 4556789999999999999999999999999999999999988999999999999999999999999999998 56788
Q ss_pred EEEeccCCCCCC
Q 021788 190 RLNWATFSGSDR 201 (307)
Q Consensus 190 ~~~~a~~~~~~~ 201 (307)
+|.|+.......
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 899987665433
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=134.45 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~i 281 (307)
.+.++|||+|||+++|+++|+++|+ .||. |.++.|+ .++.++.++|||||+|.+.++|.+|+..|| +..|+|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3578999999999999999999996 9998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEecCCCCCCC
Q 021788 282 RIDVATPKKASG 293 (307)
Q Consensus 282 ~v~~a~~k~~~~ 293 (307)
+|.|++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999886543
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=130.60 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=73.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc--eecCeeE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV--YCSSRPM 281 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~--~i~g~~i 281 (307)
...++++|||+|||+++++++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|+..|++. .|+|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345778999999999999999999996 9999999998754 689999999999999999999764 5899999
Q ss_pred EEEecCCCCCCC
Q 021788 282 RIDVATPKKASG 293 (307)
Q Consensus 282 ~v~~a~~k~~~~ 293 (307)
+|.|+++++.+.
T Consensus 84 ~V~~a~~~~~~~ 95 (104)
T 1wex_A 84 FFNYSTSKRITR 95 (104)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCccccC
Confidence 999999876543
No 115
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=132.57 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC-CCCCCCCCCceEEE
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-GSLMPNTDQPFRLN 192 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~-g~~~~~~~~~v~~~ 192 (307)
+++|||+|||+++|+++|+++|+.|| .|.+|++++|+.+|.++|||||+|.+.++|.+|++.++ +..+ .++.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 89999999999999999999999999999999999774 4456 67889999
Q ss_pred eccCCCC
Q 021788 193 WATFSGS 199 (307)
Q Consensus 193 ~a~~~~~ 199 (307)
|+.++..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9876543
No 116
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9e-20 Score=136.80 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++++++|+++|+ .||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999996 9999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87643
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-19 Score=129.82 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC-----ee
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-----RP 280 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g-----~~ 280 (307)
...++|||+|||+++|+++|+++|+ .||.|..|+|+.+ |||||+|++.++|.+||+.|||..|+| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4578999999999999999999996 9999999999876 799999999999999999999999999 99
Q ss_pred EEEEecCCCCCCCccccc
Q 021788 281 MRIDVATPKKASGYQQQY 298 (307)
Q Consensus 281 i~v~~a~~k~~~~~~~~~ 298 (307)
|+|++++++..+....+.
T Consensus 85 i~V~~a~~~~~~~~rsrs 102 (108)
T 1x4c_A 85 IRVKVDGPRSPSYGRSRS 102 (108)
T ss_dssp EEEEESSCCSCCCCCSSC
T ss_pred EEEEeCCCCCCCCCCCCC
Confidence 999999998766554443
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=9.5e-20 Score=126.04 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
+|||+|||+++|+++|+++|+ .||.|.+++++.++.++.++|||||+|.+.++|.+|++ ||+..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999996 99999999999999899999999999999999999997 9999999999999986
No 119
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=1.3e-18 Score=128.38 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC-CCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~-~~~~v 189 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|+|..+.+ ..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44668999999999999999999999999999999999998 79999999999999999999999999998853 23889
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.|+.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999876543
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.6e-19 Score=133.73 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|++|++.|+|..+. ++.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 45567789999999999999999999999999999999999989999999999999999999999999999994 5666
Q ss_pred EEEec
Q 021788 190 RLNWA 194 (307)
Q Consensus 190 ~~~~a 194 (307)
+|.|+
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 66665
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=132.41 Aligned_cols=85 Identities=16% Similarity=0.448 Sum_probs=78.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-------
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC------- 276 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i------- 276 (307)
.....++|||+|||+++|+++|+++|+ .||.|.+++|++++ ++.++|||||+|.+.++|.+|+..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345678999999999999999999996 99999999999998 899999999999999999999999999999
Q ss_pred -cCeeEEEEecCCCC
Q 021788 277 -SSRPMRIDVATPKK 290 (307)
Q Consensus 277 -~g~~i~v~~a~~k~ 290 (307)
.++.|+|+|++|+.
T Consensus 99 ~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 99 APTEPLLCKFSGPSS 113 (114)
T ss_dssp CCSSCBEEEECCCSC
T ss_pred CCCCceeEEccCCCC
Confidence 58889999999864
No 122
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=129.38 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=77.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+++|+++|+++|+ .||.| +|+.+ .+++++|||||+|++.++|.+|+..||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 455789999999999999999999996 89977 56666 67899999999999999999999999999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
+|++++...+.
T Consensus 86 ~~a~~~~~~~~ 96 (101)
T 2fc9_A 86 ELQGPRGSPNS 96 (101)
T ss_dssp EECSSCCCCCC
T ss_pred EEcCCCCCCCC
Confidence 99999866543
No 123
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=128.78 Aligned_cols=82 Identities=21% Similarity=0.457 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec--CeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~--g~~i~ 282 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+ |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 34678999999999999999999996 9999999998754 689999999999999999999999999 99999
Q ss_pred EEecCCCCCCC
Q 021788 283 IDVATPKKASG 293 (307)
Q Consensus 283 v~~a~~k~~~~ 293 (307)
|+|++++..++
T Consensus 87 V~~a~~~~~~G 97 (97)
T 1why_A 87 VDFAKSGPSSG 97 (97)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999987653
No 124
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=132.19 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||. .+|+|++|+ +++++|||||+|++.++|.+|| .+|+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 44668999999999999999999996 9994 599999997 7999999999999999999999 589999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
++.+.+..
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 99987644
No 125
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=130.52 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC--CCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM--PNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~~~~~ 187 (307)
...-.+|||+|||+++|+++|+++|+.||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|+|... ...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456679999999999999999999999994 67999999999999999999999999999999999999752 22678
Q ss_pred ceEEEeccC
Q 021788 188 PFRLNWATF 196 (307)
Q Consensus 188 ~v~~~~a~~ 196 (307)
.|+|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 899999863
No 126
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=129.66 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLIL 87 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 3556789999999999999999999999999999999999998999999999999999999999999999998 56788
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.|+.....
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 8888876543
No 127
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=127.54 Aligned_cols=87 Identities=25% Similarity=0.455 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445788999999999999999999999999999999999998999999999999999999999999999999 567788
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 888776543
No 128
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=129.89 Aligned_cols=81 Identities=9% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeE
Q 021788 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~i 281 (307)
..++++|||+|||+ ++|+++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|++.||+ ..|.|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 44788999999999 999999999996 9999999999865 47999999999999999999986 45999999
Q ss_pred EEEecCCCCCC
Q 021788 282 RIDVATPKKAS 292 (307)
Q Consensus 282 ~v~~a~~k~~~ 292 (307)
+|.|++++++.
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999976543
No 129
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=125.28 Aligned_cols=85 Identities=25% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4678999999999999999999999999999999999998999999999999999999999999999999 56788888
Q ss_pred eccCCCC
Q 021788 193 WATFSGS 199 (307)
Q Consensus 193 ~a~~~~~ 199 (307)
++..+..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 8876543
No 130
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.7e-19 Score=126.66 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 577888
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
+.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88863
No 131
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=127.97 Aligned_cols=87 Identities=21% Similarity=0.435 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcCceEEEEeCCHHHHHHHHHHh-CCCCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~~ 188 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.+ +.++.++|||||+|.+.++|.+|++.| ++..+ .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCE
Confidence 4567889999999999999999999999999999999999 789999999999999999999999999 99999 5678
Q ss_pred eEEEeccCCCC
Q 021788 189 FRLNWATFSGS 199 (307)
Q Consensus 189 v~~~~a~~~~~ 199 (307)
|+|.|+.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 88888876543
No 132
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.8e-19 Score=127.45 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556788999999999999999999999999999999999998999999999999999999999999999998 57788
Q ss_pred EEEecc
Q 021788 190 RLNWAT 195 (307)
Q Consensus 190 ~~~~a~ 195 (307)
++.|++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 888875
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=134.25 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCe-eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v-~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
....++|||+|||+++|+++|+++|+ .||.| ..|+|++|+ +|+++|||||+|.+.++|.+||.. |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44678999999999999999999996 99999 899999998 899999999999999999999976 999999999999
Q ss_pred EecCCCC
Q 021788 284 DVATPKK 290 (307)
Q Consensus 284 ~~a~~k~ 290 (307)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998765
No 134
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4e-20 Score=132.64 Aligned_cols=82 Identities=33% Similarity=0.564 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
++|||+|||.++++++|+++|+ .||.|.+++|.+++.+|.++|||||+|++.+ |.+|+..|||..|+|+.|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999996 9999999999999999999999999999999 9999999999999999999999998
Q ss_pred CCCC
Q 021788 289 KKAS 292 (307)
Q Consensus 289 k~~~ 292 (307)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=125.54 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
++|||+|||+++++++|+++|+ .||.|.++++..++.++.++|||||+|.+.++|.+|+..++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999996 99999999999999899999999999999999999999999 9999999999987
No 136
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=130.06 Aligned_cols=84 Identities=21% Similarity=0.435 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||..+++++|+++|+ .||.|.+|+|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45678999999999999999999996 9999999999876 6899999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
|++++......
T Consensus 95 ~a~~~~~~~~~ 105 (109)
T 1x4g_A 95 WGKESPDMTSG 105 (109)
T ss_dssp CCCCCCSSCCC
T ss_pred ecCCCCCCCCC
Confidence 99998665443
No 137
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.8e-19 Score=138.74 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~---v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++|+. |+++|||||+|++.++|.+||. ||+..|+||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 44678999999999999999999996 9999 89999999987 9999999999999999999998 99999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|.++.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987653
No 138
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-18 Score=125.48 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34577899999999999999999999999999999999999899999999999999999999999 999998 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888876544
No 139
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=125.76 Aligned_cols=83 Identities=29% Similarity=0.601 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999998 56788888
Q ss_pred eccCC
Q 021788 193 WATFS 197 (307)
Q Consensus 193 ~a~~~ 197 (307)
|+..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 87643
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=136.37 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....+.++|||+|||..+|+++|+++|+ .||.|.+++|++++.+++++|||||+|++.++|.+|++.|||..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455778999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 021788 283 IDVA 286 (307)
Q Consensus 283 v~~a 286 (307)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 141
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=124.73 Aligned_cols=81 Identities=20% Similarity=0.434 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+++|. +|||||+|++.++|.+|+..|||..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999996 99999999987 5799999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++.....
T Consensus 76 ~a~~~~~~~~ 85 (90)
T 2dnq_A 76 ASKNKSKASS 85 (90)
T ss_dssp CSSCCCCCCS
T ss_pred ECCCCCCCCC
Confidence 9999866543
No 142
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=130.89 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=76.4
Q ss_pred cCCCCCeEEEcCCCCCC------CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 204 EACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~------t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
.....++|||+|||+.+ |+++|+++|+ .||.|.+|+|. +.+|+++|||||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34457899999999999 7899999996 99999999988 367899999999999999999999999999999
Q ss_pred Ce-eEEEEecCCCC
Q 021788 278 SR-PMRIDVATPKK 290 (307)
Q Consensus 278 g~-~i~v~~a~~k~ 290 (307)
|+ .|+|.++...+
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999998654
No 143
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.7e-19 Score=134.89 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~---v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
....++|||+|||+++|+++|+++|+ .||. |..|+|++++. |+++|||||+|.+.++|.+||. ||+..|+||.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 44678999999999999999999996 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|.++.+++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997654
No 144
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.2e-18 Score=130.85 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 578888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 888876544
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=135.45 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|..+.+..+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34678999999999999999999996 99999544333333378899999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++..+..
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpx_A 101 FGKNKKQRSS 110 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EccCCCCCCC
Confidence 9999876554
No 146
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=128.41 Aligned_cols=87 Identities=25% Similarity=0.385 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC------CCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMPN 184 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~------g~~~~~ 184 (307)
.....++|||+|||+++++++|+++|..||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CCCceEEEeccCCCC
Q 021788 185 TDQPFRLNWATFSGS 199 (307)
Q Consensus 185 ~~~~v~~~~a~~~~~ 199 (307)
.++.|+|.|+.....
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 678899999876544
No 147
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=126.28 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999 5788999
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99876654
No 148
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=134.07 Aligned_cols=82 Identities=13% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
..++++|||+|||+.+++++|+ ++|+ .||.|.+|.+.+ +++++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4567899999999999999876 6896 999999988753 5788999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 021788 281 MRIDVATPKK 290 (307)
Q Consensus 281 i~v~~a~~k~ 290 (307)
|+|.|++++.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999999864
No 149
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.9e-18 Score=127.72 Aligned_cols=89 Identities=20% Similarity=0.423 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC-CCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~v 189 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++.. +.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45677899999999999999999999999999999999999899999999999999999999999999976 55567889
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999876543
No 150
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-20 Score=134.20 Aligned_cols=85 Identities=16% Similarity=0.452 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.. .++.++.++.++|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34578999999999999999999996 9999988 677777789999999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99988654
No 151
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=126.01 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
.....++|||+|||+++++++|+++|+.||.|.+ ++++.++.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567789999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCCCCceEEEec
Q 021788 183 PNTDQPFRLNWA 194 (307)
Q Consensus 183 ~~~~~~v~~~~a 194 (307)
.++.+++.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 5677787776
No 152
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=129.02 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=80.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
++|||+|||+++|+++|+++|+.||+|.+|+++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.+++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 58999999999999999999999999999999987 678999999999999999999999998 56668888887
Q ss_pred CCCCCCccc-----CCCCCeEEEcCCC
Q 021788 196 FSGSDRRTE-----ACSDLSIFVGDLA 217 (307)
Q Consensus 196 ~~~~~~~~~-----~~~~~~l~v~nlp 217 (307)
......... .....+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 655333221 1235789999996
No 153
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8e-19 Score=129.33 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~-i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
....++|||+|||+++|+++|+++|+ .||.|.. |+|+.+ .+|+++|||||+|++.++|.+||.. |+..|+||.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34678999999999999999999996 9999997 888888 7899999999999999999999987 999999999999
Q ss_pred EecCCCC
Q 021788 284 DVATPKK 290 (307)
Q Consensus 284 ~~a~~k~ 290 (307)
.++.+++
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9998765
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=127.38 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 446789999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 888875543
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=7.8e-20 Score=141.22 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=75.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee
Q 021788 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (307)
Q Consensus 158 g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~ 237 (307)
|+||.+|.-++.+..++..+.... .+... .-.. ............++|||+|||+++|+++|+++|+ .|| |+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~--g~~~---g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQM--GRGS---GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS
T ss_pred CcccccccCccccchhcccchhcc-CCCCC--CCCC---CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce
Confidence 567788887777766666543321 11111 0000 0011112334568999999999999999999996 999 77
Q ss_pred EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCC
Q 021788 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 238 ~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
+|+|++|+. ++++|||||+|++.++|.+|| .+|+..|+||.|+|.++.+++..
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 999999976 999999999999999999999 89999999999999999987543
No 156
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=126.45 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=73.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+.+|+++|+++|+ .||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 344578999999999999999999996 999997 666654 57899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 021788 284 DVATPKKA 291 (307)
Q Consensus 284 ~~a~~k~~ 291 (307)
+|+++++.
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99999764
No 157
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=125.98 Aligned_cols=86 Identities=26% Similarity=0.454 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++|+++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEE
Confidence 34567889999999999999999999999999999999998 799999999999999999999999999999 67888
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 8888876544
No 158
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=125.63 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999998 567899
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.++....
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 98887553
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=5.9e-19 Score=132.51 Aligned_cols=105 Identities=12% Similarity=0.185 Sum_probs=91.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 456789999999999999999999999999999999875 45689999999999999999999999999 5678888
Q ss_pred EeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC
Q 021788 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (307)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~ 235 (307)
.|+...... .+++...++++|.++|+ +||.
T Consensus 80 ~~a~~~~~~-------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF-------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EECCHHHHT-------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEecCChhh-------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 887643221 57788899999999996 8884
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=127.60 Aligned_cols=86 Identities=23% Similarity=0.507 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3456778999999999999999999999999999999999998999999999999999999999999999998 56778
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|.++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 88887654
No 161
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=127.05 Aligned_cols=88 Identities=43% Similarity=0.810 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc-
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP- 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~- 188 (307)
.....++|||+|||+++++++|+++|+.||.|. +|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 999999999999999999999999999999999999999655422
Q ss_pred -eEEEeccCCC
Q 021788 189 -FRLNWATFSG 198 (307)
Q Consensus 189 -v~~~~a~~~~ 198 (307)
+++.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 8888887543
No 162
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.1e-18 Score=123.10 Aligned_cols=81 Identities=35% Similarity=0.597 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
+++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 46899999999999999999999999999999999988999999999999999999999999999999 5778888888
Q ss_pred cCC
Q 021788 195 TFS 197 (307)
Q Consensus 195 ~~~ 197 (307)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 754
No 163
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=1.6e-18 Score=132.64 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 456778999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.|+..+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 8887654
No 164
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=9.6e-19 Score=123.94 Aligned_cols=82 Identities=22% Similarity=0.440 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999 5677888
Q ss_pred Eecc
Q 021788 192 NWAT 195 (307)
Q Consensus 192 ~~a~ 195 (307)
.|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7763
No 165
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-18 Score=124.21 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=74.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhC--CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~--G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
....+.++|||+|||+.+|+++|+++|+ .| |.|.++++. +|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3345678999999999999999999996 99 999988764 579999999999999999999999999999
Q ss_pred EEEEecCCCCCCCc
Q 021788 281 MRIDVATPKKASGY 294 (307)
Q Consensus 281 i~v~~a~~k~~~~~ 294 (307)
|+|.|++++.....
T Consensus 81 l~v~~a~~~~~~~~ 94 (99)
T 2cpd_A 81 IEVTLAKPVDKDSS 94 (99)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCCCCCC
Confidence 99999999875543
No 166
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=130.44 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeE
Q 021788 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~i 281 (307)
..++++|||+|||++ +|+++|+++|+ .||.|.+|+|++ ++|||||+|++.++|.+|+..|++ ..|.||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 457889999999998 99999999996 999999999974 368999999999999999998864 56999999
Q ss_pred EEEecCCCCCCCcc
Q 021788 282 RIDVATPKKASGYQ 295 (307)
Q Consensus 282 ~v~~a~~k~~~~~~ 295 (307)
+|.|+++++...+.
T Consensus 95 ~V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 95 KVDLSEKYKKLVSG 108 (112)
T ss_dssp EEEEECSCSSSSCC
T ss_pred EEEECccccccccC
Confidence 99999988766544
No 167
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=123.33 Aligned_cols=81 Identities=17% Similarity=0.414 Sum_probs=73.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.|.+++|.+ +||||+|++.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345678999999999999999999996 999999999873 39999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 021788 284 DVATPKKASG 293 (307)
Q Consensus 284 ~~a~~k~~~~ 293 (307)
+|++++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9999886544
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=130.47 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .| .|.+|+|++|+. |+++|||||+|.+.++|.+|| .||+..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999996 89 899999999976 999999999999999999999 79999999999999998
Q ss_pred CCC
Q 021788 287 TPK 289 (307)
Q Consensus 287 ~~k 289 (307)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 169
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.1e-19 Score=128.34 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
...++|||+|||.++++++|+++|+ .||.|.+++|. +++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3568999999999999999999996 99999999987 3578999999999999999999999999999999999
Q ss_pred cCCC
Q 021788 286 ATPK 289 (307)
Q Consensus 286 a~~k 289 (307)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9875
No 170
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=127.88 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345788999999999999999999999999999999999988999999999999999999999999999998 678899
Q ss_pred EEeccCCCCC
Q 021788 191 LNWATFSGSD 200 (307)
Q Consensus 191 ~~~a~~~~~~ 200 (307)
|.++......
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9998765443
No 171
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=8.1e-19 Score=130.23 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
..++|||+|||+++|+++|+++|+ .|| .|..++|..+ .++|||||+|++.++|.+|++.|||..|+|+.|+|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 457999999999999999999996 999 8999988533 4789999999999999999999999999999999999
Q ss_pred cCCCC
Q 021788 286 ATPKK 290 (307)
Q Consensus 286 a~~k~ 290 (307)
++.+.
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 98664
No 172
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=4.4e-19 Score=127.20 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.+|||+|||+++|+++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.|+|..+ .++.++|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 4799999999999999999999999 999999999999999999999999999999999999999999 567778877
Q ss_pred ccCCC
Q 021788 194 ATFSG 198 (307)
Q Consensus 194 a~~~~ 198 (307)
+.+..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 76543
No 173
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.8e-18 Score=128.28 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=73.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
......++|||+|||+++|+++|+++|+ .||.|.++.|. +|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455778999999999999999999996 99999999987 68999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 021788 283 IDVATPKKAS 292 (307)
Q Consensus 283 v~~a~~k~~~ 292 (307)
|.|++++..+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999987654
No 174
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.6e-18 Score=125.87 Aligned_cols=84 Identities=21% Similarity=0.428 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 368999999999999999999999999999999999998999999999999999999999999999999 568888888
Q ss_pred ccCCCC
Q 021788 194 ATFSGS 199 (307)
Q Consensus 194 a~~~~~ 199 (307)
+.....
T Consensus 79 a~~~~~ 84 (96)
T 2x1f_A 79 SSNSDI 84 (96)
T ss_dssp CSCSSG
T ss_pred cCCCCC
Confidence 876543
No 175
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.7e-18 Score=124.78 Aligned_cols=79 Identities=16% Similarity=0.357 Sum_probs=71.9
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 203 TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
....++++|||+|||+ ++++++|+++|+ .||.|.+++|. +|||||+|++.++|.+|+..|||..|+|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3455788999999998 999999999996 99999999983 6899999999999999999999999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|+|++++.
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999998864
No 176
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-19 Score=137.34 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|..+.++.+..+|+++|||||+|++.++|.+||. |||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44668999999999999999999996 99999987777777889999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998754
No 177
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=125.72 Aligned_cols=82 Identities=24% Similarity=0.452 Sum_probs=75.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
...+.++|||+|||+.+|+++|+++|+ .||.|..|+|.++ +|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 345678999999999999999999996 9999999999854 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 021788 284 DVATPKKAS 292 (307)
Q Consensus 284 ~~a~~k~~~ 292 (307)
+|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999987644
No 178
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=126.67 Aligned_cols=84 Identities=20% Similarity=0.433 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999 5677888
Q ss_pred EeccCC
Q 021788 192 NWATFS 197 (307)
Q Consensus 192 ~~a~~~ 197 (307)
.|+...
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 887654
No 179
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=3.6e-19 Score=149.69 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G--~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..++|||+||++++|+++|+++|+ .|| .|++|+|++|+.+++++|||||+|++.++|.+||..||+..|.|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 021788 285 VATPK 289 (307)
Q Consensus 285 ~a~~k 289 (307)
|++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98764
No 180
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=133.82 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCC----CCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMPN 184 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~----~~~~ 184 (307)
.....++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|+|. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999998 77
Q ss_pred CCCceEEEeccCCC
Q 021788 185 TDQPFRLNWATFSG 198 (307)
Q Consensus 185 ~~~~v~~~~a~~~~ 198 (307)
.++.|+|.++....
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 56667777776543
No 181
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-20 Score=140.28 Aligned_cols=88 Identities=25% Similarity=0.367 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~--------i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
..+.++|||+|||+++++++|+++|+ .||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..|||..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 44678999999999999999999996 9999999 99999988999999999999999999999999999999
Q ss_pred cCeeEEEEecCCCCCCC
Q 021788 277 SSRPMRIDVATPKKASG 293 (307)
Q Consensus 277 ~g~~i~v~~a~~k~~~~ 293 (307)
+|+.|+|+|++++....
T Consensus 83 ~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFN 99 (116)
Confidence 99999999999886553
No 182
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=127.81 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.+++ .+ .++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999998 66 56888
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.++.....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 8888865433
No 183
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=4.7e-18 Score=124.96 Aligned_cols=82 Identities=29% Similarity=0.494 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|..|+|+ ++||||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34678999999999999999999996 99999999986 3599999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 021788 285 VATPKKASGYQ 295 (307)
Q Consensus 285 ~a~~k~~~~~~ 295 (307)
|++++..+...
T Consensus 79 ~a~~~~~~~~~ 89 (103)
T 2dgu_A 79 FAKPPDQKRKE 89 (103)
T ss_dssp ECCCCCCCCCC
T ss_pred EcCCCcccchh
Confidence 99988665543
No 184
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=126.97 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
++|||+|||+++|+++|+++|+ .||.|.+++|..+ ++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999996 9999999999877 689999999999999999999999999999999999998
Q ss_pred CCCCCc
Q 021788 289 KKASGY 294 (307)
Q Consensus 289 k~~~~~ 294 (307)
+.....
T Consensus 75 ~~~~~~ 80 (101)
T 2hvz_A 75 MPRRSR 80 (101)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 865443
No 185
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=6.5e-18 Score=126.91 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
+....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 79 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIK 79 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 888875543
No 186
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.6e-18 Score=125.62 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++++++|+++|+.|| |.+|+++.++.+|+++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEE
Confidence 3456778999999999999999999999997 999999999999999999999999999999999 8999999 56788
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 8888876543
No 187
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-19 Score=132.61 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~---v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
....++|||+|||+++|+++|+++|+ .||. |..|+|++|+. |+++|||||+|.+.++|.+||. ||+..|+||.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 45678999999999999999999996 9888 89999999987 9999999999999999999998 99999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|.++.+++
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999998754
No 188
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=125.37 Aligned_cols=85 Identities=29% Similarity=0.574 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
.+.++|||+|||+++++++|+++|+.||.|.++ +++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999998 5778888
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
.++.....
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 88876543
No 189
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.3e-18 Score=130.60 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..++++|||+|||+.+|+++|+++|+ .||.|.+|.|+.+ +.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34678999999999999999999996 9999999999976 4558999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++...
T Consensus 81 ~a~~~~~~ 88 (115)
T 3lqv_A 81 YYNANRAF 88 (115)
T ss_dssp ECCHHHHT
T ss_pred EecCChhh
Confidence 99976443
No 190
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.2e-18 Score=126.68 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
..++++|||+|||+++++++|+ ++|+ .||.|.+|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 4577899999999999999999 9996 999999998874 4778899999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 021788 281 MRIDVATPKKA 291 (307)
Q Consensus 281 i~v~~a~~k~~ 291 (307)
|+|.|++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999998754
No 191
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=1.1e-18 Score=127.63 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 113 ~~~~~l~v~nLp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
...++|||+|||+ ++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+.+ .
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL-K 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-C
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999943 2
Q ss_pred CceEEEeccC
Q 021788 187 QPFRLNWATF 196 (307)
Q Consensus 187 ~~v~~~~a~~ 196 (307)
+.+++.++..
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 7888888754
No 192
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=123.91 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC-ceecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~-v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g-~~i~g~~i~ 282 (307)
....++|||+|||+++|+++|+++|+ .||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 34678999999999999999999996 9999 6666652 468999999999999999999999 999999999
Q ss_pred EEecCCCCCCCc
Q 021788 283 IDVATPKKASGY 294 (307)
Q Consensus 283 v~~a~~k~~~~~ 294 (307)
|+|++++..+..
T Consensus 77 v~~a~~~~~~~~ 88 (93)
T 2cqh_A 77 VDYSVSKKLRSS 88 (93)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEccCccccCC
Confidence 999999866554
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=125.55 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....++|||+|||+++++++|+++|+.|| |.+|+++.++.+ |+++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEE
Confidence 445678999999999999999999999999 999999999887 999999999999999999999 8999998 66788
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.++.....
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 8888876543
No 194
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=121.79 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.+++|.+ +||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999996 999999999873 389999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++..+
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99987543
No 195
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=127.59 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
.....++|||+|||+++|+++|+++|+.||.|. .|+++.++.+|.++|||||+|.+.++|.+|++.|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCC
Q 021788 183 PNTDQPFRLNWATFSGS 199 (307)
Q Consensus 183 ~~~~~~v~~~~a~~~~~ 199 (307)
.++.|+|.++.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 567888888876544
No 196
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=125.97 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|..||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999998 567788
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.++..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 8887643
No 197
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=124.81 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++. ++.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4678999999999999999999999999999999999876 668999999999999999999999999999 56788
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.++.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 8888876544
No 198
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=126.10 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+.+|+++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999999999999999996 89988766 2468899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99988654
No 199
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=123.16 Aligned_cols=86 Identities=27% Similarity=0.516 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeE
Confidence 3456789999999999999999999999999999999999863 3689999999999999999999999998 57889
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999876543
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=123.74 Aligned_cols=86 Identities=28% Similarity=0.479 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC-CCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~ 188 (307)
.....++|||+|||+++|+++|+++|+. ||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|++.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999998 8 4567
Q ss_pred eEEEeccCCCC
Q 021788 189 FRLNWATFSGS 199 (307)
Q Consensus 189 v~~~~a~~~~~ 199 (307)
|++.++.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 77777765443
No 201
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=5.6e-19 Score=122.08 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
+|||+|||+++|+++|+++|+ .||.|.++.+.+++.++.++|||||+|.+.++|.+|+. +++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999996 99999999999999999999999999999999999996 5899999999999985
No 202
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-17 Score=122.27 Aligned_cols=87 Identities=22% Similarity=0.409 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556789999999999999999999999999999999999863 3899999999999999999999999999 66788
Q ss_pred EEEeccCCCCC
Q 021788 190 RLNWATFSGSD 200 (307)
Q Consensus 190 ~~~~a~~~~~~ 200 (307)
+|.++......
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 88888765443
No 203
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=4e-18 Score=134.01 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC--eeEEEE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS--RPMRID 284 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g--~~i~v~ 284 (307)
...+|||+||++.+|+++|+++|+ +||.|++|+|..+ .++|||||+|++.++|.+|++.|||..|.| +.|+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445789999999999999999996 9999999998754 257899999999999999999999999955 999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999874
No 204
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-19 Score=123.62 Aligned_cols=74 Identities=20% Similarity=0.399 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-e
Q 021788 208 DLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-P 280 (307)
Q Consensus 208 ~~~l~v~nlp~~~------t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~ 280 (307)
+++|||+|||+.+ |+++|+++|+ .||.|.+++|. +.+|+++|||||+|.+.++|.+|+..|||..|+|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7899999996 99999999987 36789999999999999999999999999999999 8
Q ss_pred EEEE
Q 021788 281 MRID 284 (307)
Q Consensus 281 i~v~ 284 (307)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8773
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=119.88 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=71.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMR 282 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~i~g~~i~ 282 (307)
.....++|||+|||..+++++|+++|+ .||.|.++++.++ +|||||+|.+.++|.+|+..| +|..|+|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 345678999999999999999999996 9999999999864 689999999999999999989 99999999999
Q ss_pred EEecC
Q 021788 283 IDVAT 287 (307)
Q Consensus 283 v~~a~ 287 (307)
|+|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 206
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=124.99 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC--CCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~~~~~~ 188 (307)
...+.++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.+++ ..+ .++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEE
Confidence 3456789999999999999999999999999999999975 58999999999999999998875 455 6788
Q ss_pred eEEEeccCCCCC
Q 021788 189 FRLNWATFSGSD 200 (307)
Q Consensus 189 v~~~~a~~~~~~ 200 (307)
|+|.|+......
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 888888765443
No 207
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=126.24 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++. ++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999998 99888 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 888876543
No 208
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.5e-18 Score=126.61 Aligned_cols=85 Identities=19% Similarity=0.391 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+..|+|..+ .++.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.|+...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 8887654
No 209
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=134.95 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|.+||+.|+|..| .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4568999999999999999999999999 999999999999999999999999999999999999999999 567788
Q ss_pred EEeccC
Q 021788 191 LNWATF 196 (307)
Q Consensus 191 ~~~a~~ 196 (307)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 888753
No 210
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=8.2e-18 Score=125.18 Aligned_cols=79 Identities=30% Similarity=0.524 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
....++|||+|||+. +|+++|+++|+ .||.|..|+| ++|||||+|++.++|.+|+..|||..|+|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 99999999996 9999999998 4789999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 021788 284 DVATPKKAS 292 (307)
Q Consensus 284 ~~a~~k~~~ 292 (307)
.|+++++..
T Consensus 95 ~~a~~~~~~ 103 (110)
T 1wf1_A 95 NMAGEPKPD 103 (110)
T ss_dssp EESCCCCSC
T ss_pred EECCCCCCC
Confidence 999865443
No 211
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=123.72 Aligned_cols=82 Identities=18% Similarity=0.452 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++. |.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 445678999999999999999999999999999999999985 99999999999999999999999999999 567788
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
|.+++
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 87765
No 212
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=124.07 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|+.||+|.+|+++.|+. |.++|||||+|.+.++|.+|+. +++..+ .++.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999986 9999999999999999999999 899988 4566677
Q ss_pred Eecc
Q 021788 192 NWAT 195 (307)
Q Consensus 192 ~~a~ 195 (307)
.++.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 6654
No 213
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.6e-18 Score=123.92 Aligned_cols=81 Identities=16% Similarity=0.346 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
..+.++|||+|||+ .+|+++|+++|+ .||.|.+++|. +|||||+|++.++|.+|+..|||..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45678999999998 999999999996 99999999984 689999999999999999999999999999999
Q ss_pred EecCCCCCCCc
Q 021788 284 DVATPKKASGY 294 (307)
Q Consensus 284 ~~a~~k~~~~~ 294 (307)
+|++++.....
T Consensus 78 ~~a~~~~~~~~ 88 (96)
T 2kvi_A 78 EVSSSNARPQF 88 (96)
T ss_dssp EEEECCCC---
T ss_pred EEcCcCCCCCC
Confidence 99988765544
No 214
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=124.03 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|..||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 44567899999999999999999999999999999999998 699999999999999999999999999999 567788
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8887643
No 215
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=121.32 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+...++.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998864 5899999999999999999988765334788899
Q ss_pred EEeccCCCCC
Q 021788 191 LNWATFSGSD 200 (307)
Q Consensus 191 ~~~a~~~~~~ 200 (307)
+.|+......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998765443
No 216
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=131.62 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCe----eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v----~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
...++|||+|||+++|+++|+++|+ .||.| .+|+|++| .+|+++|||||+|++.++|.+||.. |+..|+||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567999999999999999999996 99875 68999999 4799999999999999999999975 9999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|..+.+++
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999987653
No 217
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.8e-18 Score=126.22 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.+ +..+ .++.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 35567889999999999999999999999999999999999989999999999999999999999976 4666 66788
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
++.++....
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 888887554
No 218
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=122.00 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++. +..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~l 85 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI--DGRWC 85 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE--TTEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCee--CCeEE
Confidence 3456778999999999999999999999999999999999998999999999999999999999994 5556 67788
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
++.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 8888876544
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=122.85 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+. ++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eEEEeec
Confidence 46789999999999999999999999999999999999989999999999999999999999999999884 4555544
Q ss_pred e
Q 021788 193 W 193 (307)
Q Consensus 193 ~ 193 (307)
+
T Consensus 81 ~ 81 (85)
T 1x4e_A 81 G 81 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=123.01 Aligned_cols=86 Identities=26% Similarity=0.497 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC------
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~------ 184 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|+|..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999854
Q ss_pred CCCceEEEeccCC
Q 021788 185 TDQPFRLNWATFS 197 (307)
Q Consensus 185 ~~~~v~~~~a~~~ 197 (307)
.++++.+.|+.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 3567888888743
No 221
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=5.9e-18 Score=120.43 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++. ++..+ .++.++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE--CCEEEE
Confidence 456788999999999999999999999999999999999998999999999999999999999974 67667 566677
Q ss_pred EEec
Q 021788 191 LNWA 194 (307)
Q Consensus 191 ~~~a 194 (307)
+.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6654
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=4.5e-17 Score=123.87 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 44677899999999999999999999999999999999998 899999999999999999999999999998 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 888875443
No 223
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=9e-18 Score=139.91 Aligned_cols=85 Identities=33% Similarity=0.491 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.+++++|||||+|.+.++|.+|+..||+..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 987654
No 224
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.6e-17 Score=119.38 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|++.|++..+ .++.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 356789999999999999999999999999999999984 789999999999999999999999999999 4567777
Q ss_pred EeccCCC
Q 021788 192 NWATFSG 198 (307)
Q Consensus 192 ~~a~~~~ 198 (307)
.++....
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 7776543
No 225
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=8.6e-18 Score=120.07 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
+.++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|+ .++|..+ .++.+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 3579999999999999999999999999999999999989999999999999999999999 8999999 677888888
Q ss_pred ccCC
Q 021788 194 ATFS 197 (307)
Q Consensus 194 a~~~ 197 (307)
+...
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 7653
No 226
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=119.12 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
..+.++|||+|| ++|+++|+++|+ .||.|.+|+|. .++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456789999996 999999999996 99999999984 467899999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 021788 285 VATPKKASGY 294 (307)
Q Consensus 285 ~a~~k~~~~~ 294 (307)
|++++.....
T Consensus 83 ~a~~~~~~~~ 92 (97)
T 1x5p_A 83 IARKQPMLDS 92 (97)
T ss_dssp CCSSCCCCCS
T ss_pred ECCCCCCCCC
Confidence 9998865543
No 227
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1.4e-17 Score=127.07 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .+..|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 567788
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88876543
No 228
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=9.6e-19 Score=132.61 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCee--EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~--~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
....++|||+|||+++|+++|+++|+ .| .|. +|+|++|+. |+++|||||+|++.++|.+||. +++..|+||.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34568899999999999999999996 89 677 899999987 9999999999999999999996 578999999999
Q ss_pred EEecCCCC
Q 021788 283 IDVATPKK 290 (307)
Q Consensus 283 v~~a~~k~ 290 (307)
|.++.+++
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99987653
No 229
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=123.69 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
...+.++|||+|||+ ++|+++|+++|+.||.|.+|++++++ |||||+|.+.++|.+|++.|++......++.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 455788999999999 99999999999999999999998764 79999999999999999999876533378889
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
+|.|+....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999987543
No 230
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.5e-17 Score=125.98 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhcCceecC--eeEEEE
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRID 284 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~i~g--~~i~v~ 284 (307)
-..|||+||++.+|+++|+++|+ +||.|.+|+|..+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34677999999999999999996 9999999988764 2577 9999999999999999999999988 999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
|++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 999874
No 231
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-18 Score=123.73 Aligned_cols=84 Identities=23% Similarity=0.504 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 3568999999999999999999999999999999999998999999999999999999999999999999 66788888
Q ss_pred eccCCC
Q 021788 193 WATFSG 198 (307)
Q Consensus 193 ~a~~~~ 198 (307)
++....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 887543
No 232
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=120.26 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
..++|||+|||+++|+++|+++|+.||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 568999999999999999999999999999999999987766 899999999999999999999999999 56778888
Q ss_pred eccCC
Q 021788 193 WATFS 197 (307)
Q Consensus 193 ~a~~~ 197 (307)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87543
No 233
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=5.3e-18 Score=117.15 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
+|||+|||+++++++|+++|+.||+|.+++++.++.+|.++|||||+|.+.++|++|++ +++..+ .++.+++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 899999 4566666653
No 234
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.2e-18 Score=126.26 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=71.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhcCc
Q 021788 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (307)
Q Consensus 209 ~~l~v~nl----p~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~----~~~----A~~A~~--~l~g~ 274 (307)
+.|||+|| ++.+++++|+++|+ .||+|.++.++.|++||+++|||||+|.+ .++ |.+|+. .|||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 99999999999997 99999999999999999999999999996 322 888888 78999
Q ss_pred eecCeeEEEEecCC
Q 021788 275 YCSSRPMRIDVATP 288 (307)
Q Consensus 275 ~i~g~~i~v~~a~~ 288 (307)
.|+||.|+|.+.+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 235
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=6.5e-18 Score=136.34 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+.+++++|+++|+ .||.|+.|.|..++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999996 99999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
|+.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998753
No 236
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=121.62 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i-~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
...++|||+|||+++|+++|+++|+ .||.|.++ .|+.++.++ .|||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3568999999999999999999996 99999999 488876643 39999999999999999999999999999999
Q ss_pred ecCCCC
Q 021788 285 VATPKK 290 (307)
Q Consensus 285 ~a~~k~ 290 (307)
|++++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999984
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.2e-18 Score=124.79 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999 56777777
Q ss_pred ecc
Q 021788 193 WAT 195 (307)
Q Consensus 193 ~a~ 195 (307)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 238
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.8e-18 Score=126.98 Aligned_cols=81 Identities=27% Similarity=0.534 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++++++|+++|+ .||.|.+++|+.++ +|.++|||||+|++.++|.+|+. ++..|+|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 467999999999999999999996 99999999999998 89999999999999999999997 999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 88754
No 239
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=1.8e-17 Score=132.19 Aligned_cols=83 Identities=24% Similarity=0.516 Sum_probs=79.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~ 287 (307)
+++|||+|||+++|+++|+++|+ .||.|.++++++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999999999999999996 99999999999998899999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021788 288 PKKA 291 (307)
Q Consensus 288 ~k~~ 291 (307)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 8754
No 240
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.2e-17 Score=123.60 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+.+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 34667899999999999999999999999999999999999 999999999999999999999999999999 567777
Q ss_pred EEecc
Q 021788 191 LNWAT 195 (307)
Q Consensus 191 ~~~a~ 195 (307)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77764
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=121.71 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC--CCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~~~~~~ 188 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..+ .++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~ 82 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQP 82 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCcE
Confidence 4457789999999999999999999999999999998865 58999999999999999998754 445 6788
Q ss_pred eEEEeccCCCCC
Q 021788 189 FRLNWATFSGSD 200 (307)
Q Consensus 189 v~~~~a~~~~~~ 200 (307)
|+|.|+......
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999998765443
No 242
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=121.56 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....++|||+|||+++|+++|+++|..||.|.+ |.++.+ .+|+++|||||+|.+.++|.+||+. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEE
Confidence 3456789999999999999999999999999988 888888 6899999999999999999999997 99888 45567
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|.++...
T Consensus 87 ~v~~~~~~ 94 (104)
T 1wg5_A 87 EIFKSSRA 94 (104)
T ss_dssp EEEEECTT
T ss_pred EEEECCHH
Confidence 77776543
No 243
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=121.24 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....++++|||+|||+++|+++|+++|++||.|.+++++++ ||+|||+|.+.++|.+|++.|++..+...++++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34567889999999999999999999999999999999853 589999999999999999999998744478899
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|.|++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998754
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=129.43 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999988999999999999999999999999999988 567777
Q ss_pred EEec
Q 021788 191 LNWA 194 (307)
Q Consensus 191 ~~~a 194 (307)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7764
No 245
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.4e-17 Score=133.08 Aligned_cols=85 Identities=28% Similarity=0.497 Sum_probs=80.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
++++|||+|||.++|+++|+++|+ .||.|.+++|++++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999999999999999996 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021788 287 TPKKAS 292 (307)
Q Consensus 287 ~~k~~~ 292 (307)
.++...
T Consensus 81 ~~~~~~ 86 (168)
T 1b7f_A 81 RPGGES 86 (168)
T ss_dssp CCCSST
T ss_pred CCCccc
Confidence 987543
No 246
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=119.82 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .||.|.+| +.++.+++ ||||+|.+.++|.+|+. |||..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 457999999999999999999996 99999987 66656555 99999999999999999 9999999999999999
Q ss_pred CCCCCCCc
Q 021788 287 TPKKASGY 294 (307)
Q Consensus 287 ~~k~~~~~ 294 (307)
.++.....
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 88765443
No 247
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.6e-17 Score=118.40 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++++++|+++|+ .| .|.+++|. +++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567999999999999999999996 99 99999884 56899999999999999999999999999999999998
Q ss_pred CCCC
Q 021788 287 TPKK 290 (307)
Q Consensus 287 ~~k~ 290 (307)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 248
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=8.9e-18 Score=129.59 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 888875543
No 249
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=119.84 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
..+.++|||+|||+++++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCe
Confidence 3466899999999999999999 99999999999999998754 88999999999999999999999999 578
Q ss_pred ceEEEeccCCC
Q 021788 188 PFRLNWATFSG 198 (307)
Q Consensus 188 ~v~~~~a~~~~ 198 (307)
.|+|.++....
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 89999987553
No 250
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=122.12 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcCceEEEEeCCHHHHHHHHHHhC--CCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~~~~~ 187 (307)
..+.++|||+|||+++++++|+++|..||. |.+|.++ .++.+|.++|||||+|.+.++|.+|++.|+ +..+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 4777 567
Q ss_pred ceEEEeccCCCC
Q 021788 188 PFRLNWATFSGS 199 (307)
Q Consensus 188 ~v~~~~a~~~~~ 199 (307)
.+++.|+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 889999876544
No 251
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=121.40 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.+ +|+|+.|+ +|+++|||||+|.+.++|++||+ +++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM--QHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34567899999999999999999999999955 99999998 89999999999999999999995 799888 455677
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 77765443
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=117.28 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEec
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a 194 (307)
++|||+|||+++++++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|.+|++.++ ..+ .++.+++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999998 777 4566666654
No 253
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=6e-18 Score=123.70 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....++|||+|||+++++++|+++|+.|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+ .++.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEE
Confidence 446779999999999999999999999999 9999999998 68999999999999999999999 8999999 55667
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
++.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 77776543
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=2.4e-17 Score=130.53 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+||+.|++..| .+..|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445778999999999999999999999999999999999999999999999999999999999999999999 667888
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.|+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 88887543
No 255
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=124.79 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+.+|+++|+++|+ .||.|.+|.|.. ++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457999999999999999999996 999999998864 4689999999999999999999999999999999999
Q ss_pred CCCCC
Q 021788 287 TPKKA 291 (307)
Q Consensus 287 ~~k~~ 291 (307)
+...-
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 87543
No 256
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=133.92 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEE--------EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA--------KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i--------~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
..++++|||+|||+.+|+++|+++|+ .||.|..+ ++. .+++++|||||+|.+.++|.+|+..|||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 44678999999999999999999996 99999874 322 3688999999999999999999999999999
Q ss_pred cCeeEEEEecCCCCCC
Q 021788 277 SSRPMRIDVATPKKAS 292 (307)
Q Consensus 277 ~g~~i~v~~a~~k~~~ 292 (307)
+|+.|+|.|++++..+
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999876543
No 257
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=126.79 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+ .|++..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999 8999999 5678888
Q ss_pred EeccCC
Q 021788 192 NWATFS 197 (307)
Q Consensus 192 ~~a~~~ 197 (307)
.++...
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 887643
No 258
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-17 Score=119.87 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|++.. ++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 445678999999999999999999999999999999965 456899999999999999999999999998 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 888876543
No 259
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=115.59 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHhhhC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 207 SDLS-IFVGDLAPDVTDSI----LQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 207 ~~~~-l~v~nlp~~~t~~~----l~~~F~~~~-G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
++.+ |||+|||+++++++ |+++|+ .| |.|.+| ++ |+|||+|.+.++|.+|++.|||..|.||.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 4555 99999999999988 458996 99 599988 23 99999999999999999999999999999
Q ss_pred EEEEecCCCCCCCc
Q 021788 281 MRIDVATPKKASGY 294 (307)
Q Consensus 281 i~v~~a~~k~~~~~ 294 (307)
|+|.||+.+.+--.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999998765443
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-18 Score=125.76 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
...+.++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +|+++|||||+|.+.++|.+||+. ++..| .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 44567899999999999999999999999999 899999998 999999999999999999999997 99888 66788
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|.++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88887643
No 261
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=122.82 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC--CCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~~~~~~ 188 (307)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..+ .++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~ 98 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 98 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeE
Confidence 4456789999999999999999999999999999999976 58999999999999999999875 455 6788
Q ss_pred eEEEeccCCCCC
Q 021788 189 FRLNWATFSGSD 200 (307)
Q Consensus 189 v~~~~a~~~~~~ 200 (307)
|+|.|+......
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 262
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=3.9e-17 Score=129.56 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.|+.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 668899
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 144 v~~a~~~~~ 152 (158)
T 2kn4_A 144 VQMARYGRP 152 (158)
T ss_dssp EEEECCSSC
T ss_pred EEECCCCCC
Confidence 999876543
No 263
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=117.71 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce--ecCeeEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--i~g~~i~ 282 (307)
..+.++|||+|||+++|+++|+++|+ .||.|.+++|+++ ++|||||+|++.++|.+ |++.. +.|+.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 34678999999999999999999996 9999999999874 68999999999999983 56655 4699999
Q ss_pred EEecCCCCCC
Q 021788 283 IDVATPKKAS 292 (307)
Q Consensus 283 v~~a~~k~~~ 292 (307)
|++++++..+
T Consensus 78 v~~a~~k~~~ 87 (89)
T 3d2w_A 78 ISNAEPKHNK 87 (89)
T ss_dssp EEECC-----
T ss_pred EEEcCCCCcC
Confidence 9999998654
No 264
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=123.91 Aligned_cols=86 Identities=9% Similarity=0.183 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
.....++|||+|||+++++++|+ ++|+.||+|.+|+++.++.++ .++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-- 88 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-- 88 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--
Confidence 44567899999999999999999 999999999999999987654 4569999999999999999999999999
Q ss_pred CCCceEEEeccCCC
Q 021788 185 TDQPFRLNWATFSG 198 (307)
Q Consensus 185 ~~~~v~~~~a~~~~ 198 (307)
.++.|+|.|+..+.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 67889999987664
No 265
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=116.11 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.|++..+.+.++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998864 5899999999999999999999999964478899
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.|+....
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987653
No 266
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=4.2e-18 Score=121.99 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEecc
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~ 195 (307)
++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.+ |.+|+..|+|..+ .++.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999989999999999999999 9999999999999 45677777766
Q ss_pred CC
Q 021788 196 FS 197 (307)
Q Consensus 196 ~~ 197 (307)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 267
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=123.01 Aligned_cols=84 Identities=23% Similarity=0.435 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||.++++++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|++|++.|+|..+ .++.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 355678899999999999999999999999999999999985 45899999999999999999999999998 56788
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
++.++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 88887643
No 268
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=6e-17 Score=123.16 Aligned_cols=82 Identities=12% Similarity=0.317 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
..+.++|||+|||+.+++++|+ ++|+.||.|.+|.+.. +++++|||||+|.+.++|..|++.|+|..+ .++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCC
Confidence 3457899999999999999876 6999999999988753 688999999999999999999999999999 567
Q ss_pred ceEEEeccCCC
Q 021788 188 PFRLNWATFSG 198 (307)
Q Consensus 188 ~v~~~~a~~~~ 198 (307)
.|+|.|+....
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 88898987543
No 269
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=6.3e-17 Score=122.06 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhcCceecC--eeEEEEe
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~i~g--~~i~v~~ 285 (307)
..|||+||++.+|+++|+++|+ .||.|.+|+|+.. .|| |||+|++.++|.+|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3467999999999999999996 9999999998652 276 9999999999999999999999987 6999999
Q ss_pred cCCCCC
Q 021788 286 ATPKKA 291 (307)
Q Consensus 286 a~~k~~ 291 (307)
|+++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 998753
No 270
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=117.20 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.| .|.+|+++.+ .+|+++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34567899999999999999999999999 9999999999 689999999999999999999999 999999 567888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
+.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8887654
No 271
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=122.07 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-----c
Q 021788 205 ACSDLSIFV--GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-----S 277 (307)
Q Consensus 205 ~~~~~~l~v--~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i-----~ 277 (307)
..++++||| +||++++|+++|+++|+ +||.|.+|.|.. .+|||||+|++.++|.+|++.|||..| .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 446789999 77999999999999996 999999988763 268999999999999999999999998 6
Q ss_pred CeeEEEEecCCCC
Q 021788 278 SRPMRIDVATPKK 290 (307)
Q Consensus 278 g~~i~v~~a~~k~ 290 (307)
|+.|.|.|++...
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999998653
No 272
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.2e-17 Score=114.35 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+ .+++|++.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 466899999999999999999999999999999875 579999999999999999999999998 667777766
Q ss_pred c
Q 021788 194 A 194 (307)
Q Consensus 194 a 194 (307)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 273
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6.7e-17 Score=127.03 Aligned_cols=86 Identities=16% Similarity=0.284 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
....+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|++|++.|+|..|.+.++.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345678999999999999999999999999999987542 5689999999999999999999999997777999999
Q ss_pred eccCCCCCCc
Q 021788 193 WATFSGSDRR 202 (307)
Q Consensus 193 ~a~~~~~~~~ 202 (307)
|++.+....+
T Consensus 120 ~Ak~~~l~vk 129 (164)
T 1sjr_A 120 FSKLTSLNVK 129 (164)
T ss_dssp ECSSSSCCCC
T ss_pred EecCCccccc
Confidence 9987654433
No 274
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=5.8e-17 Score=119.15 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhhhCCCeeEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 021788 205 ACSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (307)
Q Consensus 205 ~~~~~~l~v~nlp~-----~~t~~~l~~~F~~~~G~v~~i~i~~d~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 278 (307)
..++++|+|.|+.. +-++++|+++|+ +||.|.+++|++++.+ ++++|||||+|.+.++|.+|+..|||+.|+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999963 247899999996 9999999999998754 6889999999999999999999999999999
Q ss_pred eeEEEEecCC
Q 021788 279 RPMRIDVATP 288 (307)
Q Consensus 279 ~~i~v~~a~~ 288 (307)
|.|+|.|+.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999876
No 275
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.4e-17 Score=123.63 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee-----E
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-----M 281 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~-----i 281 (307)
..++|||+|||+++|+++|+++|+ .||.|..|.|+.+ |||||+|++.++|.+||+.|||..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 468999999999999999999996 9999999999865 89999999999999999999999999998 8
Q ss_pred EEEecCCCCCCCc
Q 021788 282 RIDVATPKKASGY 294 (307)
Q Consensus 282 ~v~~a~~k~~~~~ 294 (307)
+|..+.++.....
T Consensus 87 ~v~~~~~~~~~~~ 99 (115)
T 3beg_B 87 RVKVDGPRSPSYG 99 (115)
T ss_dssp EEEECC----CCC
T ss_pred EeccCCCCCCCCC
Confidence 8988887755443
No 276
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=119.08 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++++++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 45678999999999999999999999999976 56666 5899999999999999999999999999998 578899
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.++.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999876543
No 277
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.2e-17 Score=124.36 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
.....++|||+|||+++|+++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|++||+ +++..| .++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCe
Confidence 3456789999999999999999999999998 89999999985 9999999999999999999999 899888 566
Q ss_pred ceEEEecc
Q 021788 188 PFRLNWAT 195 (307)
Q Consensus 188 ~v~~~~a~ 195 (307)
.|+|.++.
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 77777765
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=4.3e-17 Score=123.92 Aligned_cols=81 Identities=15% Similarity=0.393 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+ .|+|..+ .++.|+|.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 7999999 567788888
Q ss_pred ccCC
Q 021788 194 ATFS 197 (307)
Q Consensus 194 a~~~ 197 (307)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 279
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=116.54 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
....+.++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l 81 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQL 81 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceE
Confidence 34567789999999999999999999999999999999865 58999999999999999999999999 56788
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
++.|+....
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 888887543
No 280
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=123.05 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++++++|+++|..||.|.+|+++.++.+|.++|||||+|.+.++|.+||+. ++..+ .++.|+|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999997 88888 6788999
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
.++.....
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99876644
No 281
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=117.84 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC---Cce
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD---QPF 189 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~---~~v 189 (307)
...++|||+|||+++|+++|+++|..||.|.+|+++.+ |||||+|.+.++|.+||+.|++..+.+.. +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 79999999999999999999999985422 789
Q ss_pred EEEeccCCCCC
Q 021788 190 RLNWATFSGSD 200 (307)
Q Consensus 190 ~~~~a~~~~~~ 200 (307)
+|.++......
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99998875543
No 282
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=125.63 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|..||.|.++.++.+..+|+++|||||+|.+.++|.+||+ +++..| .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 4566899999999999999999999999999997777777799999999999999999999999 999999 5667777
Q ss_pred Eecc
Q 021788 192 NWAT 195 (307)
Q Consensus 192 ~~a~ 195 (307)
.++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7765
No 283
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=114.88 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC
Q 021788 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (307)
Q Consensus 115 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~ 185 (307)
.++|||+|||+.+ ++++|+++|+.||.|.+|++. +.+|+++|||||+|.+.++|.+|++.|+|..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999654
No 284
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.9e-17 Score=138.00 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|++..| .++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 677999999999999999999999999 999999999999999999999999999999999999999999 5677888
Q ss_pred EeccC
Q 021788 192 NWATF 196 (307)
Q Consensus 192 ~~a~~ 196 (307)
.++..
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 87753
No 285
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=117.87 Aligned_cols=84 Identities=25% Similarity=0.511 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.| .+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 45678999999999999999999999977 3788889988999999999999999999999999999998 567888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 888876543
No 286
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=122.02 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
.....++|||+|||+++|+++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|.+||+ +++..+. ++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG--QR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS--SS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC--Ce
Confidence 4467889999999999999999999999998 89999999986 9999999999999999999999 9999884 45
Q ss_pred ceEEEecc
Q 021788 188 PFRLNWAT 195 (307)
Q Consensus 188 ~v~~~~a~ 195 (307)
.|++.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 56666654
No 287
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.7e-17 Score=126.59 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.|+. |+++|||||+|.+.++|++|++ +++..+ .++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEE
Confidence 456789999999999999999999999999 89999999986 9999999999999999999999 999998 5667
Q ss_pred eEEEecc
Q 021788 189 FRLNWAT 195 (307)
Q Consensus 189 v~~~~a~ 195 (307)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7777764
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=121.90 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|+.||.|.+ .++.+..+|.++|||||+|.+.++|.+|++ |+|..+ .++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 346789999999999999999999999999988 677777789999999999999999999999 999999 5678888
Q ss_pred EeccCCC
Q 021788 192 NWATFSG 198 (307)
Q Consensus 192 ~~a~~~~ 198 (307)
.++....
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 8887543
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=118.85 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~ 185 (307)
....++|||+|||+.+ |+++|+++|+.||.|.+|+++ +.+|+++|||||+|.+.++|.+|++.|+|..+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--D 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--S
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--C
Confidence 3457899999999999 789999999999999999988 35899999999999999999999999999999 5
Q ss_pred CC-ceEEEeccC
Q 021788 186 DQ-PFRLNWATF 196 (307)
Q Consensus 186 ~~-~v~~~~a~~ 196 (307)
++ .+++.++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 66 788888764
No 290
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=112.86 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
..+.++|||+|||+++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|++..+ .++.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4567899999999999999999999999999999987 47999999999999999999999988 5678888
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88876544
No 291
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=7.2e-17 Score=132.30 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+|.++|||||+|.+.++|.+|+.. ++..|+|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 44678999999999999999999996 999999999999999999999999999999999999955 9999999999999
Q ss_pred ecCCCCC
Q 021788 285 VATPKKA 291 (307)
Q Consensus 285 ~a~~k~~ 291 (307)
++.++..
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9987654
No 292
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2.6e-17 Score=113.61 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
+|||+|||+++++++|+++|+.||+|.++.++.++.+|.++|||||+|.+.++|.+|++. ++..+.+..+.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 599999999999999999999999999999999998999999999999999999999995 8888855444443
No 293
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=113.52 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 445678999999999999999999999999996 666643 5789999999999999999999999999 567788
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.++...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887654
No 294
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=119.79 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~ 282 (307)
...++|||+|||+++|+++|+++|+ .||.|. +.++.++.+ |+++|||||+|++.++|.+||..|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4568999999999999999999996 999999 888888777 7999999999999999999999993 24555555
Q ss_pred EEecC
Q 021788 283 IDVAT 287 (307)
Q Consensus 283 v~~a~ 287 (307)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 54443
No 295
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=119.97 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
.+.++|||+|||+++|+++|+++|+.| .|.+|+|+.|+. |+++|||||+|.+.++|.+|| .+++..| .++.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 445799999999999999999999999 899999999984 999999999999999999999 5899988 45677776
Q ss_pred ecc
Q 021788 193 WAT 195 (307)
Q Consensus 193 ~a~ 195 (307)
.+.
T Consensus 89 ~a~ 91 (109)
T 2dnn_A 89 PAT 91 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 296
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1.1e-16 Score=127.89 Aligned_cols=86 Identities=20% Similarity=0.414 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+.+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||..|+|..| .+..|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999998 5678888
Q ss_pred EeccCCCC
Q 021788 192 NWATFSGS 199 (307)
Q Consensus 192 ~~a~~~~~ 199 (307)
.|+.....
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 88765543
No 297
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=121.67 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
...+.++|||+|||+++|+++|+++|..||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 345678999999999999999999999999985443333333789999999999999999999999999999 677888
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 888876544
No 298
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=115.88 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
.+++|||+|||+++|+++|+++|+ .||.|.+++|+++ ++|||||+|++.++|.+|+.. ...+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 568999999999999999999996 9999999998864 689999999999999754321 34568999999999
Q ss_pred CCCCCCCc
Q 021788 287 TPKKASGY 294 (307)
Q Consensus 287 ~~k~~~~~ 294 (307)
+++.....
T Consensus 76 ~~~~~~~~ 83 (88)
T 1wf0_A 76 EPKHNSNS 83 (88)
T ss_dssp CCCCCCCS
T ss_pred CCCCCCCC
Confidence 99876543
No 299
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.6e-17 Score=119.27 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
..+.++|||+|||++ +++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++......++.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999753 5899999999999999999887654333778889
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.|+....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99887543
No 300
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.4e-17 Score=120.67 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.++++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 4568999999999999999999999999999999983 468999999999999999999999999 56777777
Q ss_pred eccC
Q 021788 193 WATF 196 (307)
Q Consensus 193 ~a~~ 196 (307)
|++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 7653
No 301
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.8e-16 Score=119.72 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|| ++|+++|+++|+ .||.|.+|.|. .++|||||+|++.++|.+|+..|||..|+|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999995 799999999996 99999999985 467899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021788 285 VATPKKAS 292 (307)
Q Consensus 285 ~a~~k~~~ 292 (307)
|++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99987544
No 302
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.6e-16 Score=117.73 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
......++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 95 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPL 95 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345678899999999999999999999999999999998 58999999999999999999999999 67788
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
+|.|+....
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 888887543
No 303
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.9e-16 Score=130.87 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=71.8
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEe
Q 021788 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (307)
Q Consensus 207 ~~~~l~v~nlp-~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~ 285 (307)
++++|||+||+ +.+|+++|+++|+ .||.|.+|+|+++ .+|||||+|++.++|.+|++.|||..|.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 56899999999 8999999999996 9999999999865 369999999999999999999999999999999999
Q ss_pred cCCC
Q 021788 286 ATPK 289 (307)
Q Consensus 286 a~~k 289 (307)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9754
No 304
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=111.39 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHh-CCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~~v 189 (307)
.....++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..+ .++.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 3456789999999999999999999999999999999974 589999999999999999998 99888 45677
Q ss_pred EEEec
Q 021788 190 RLNWA 194 (307)
Q Consensus 190 ~~~~a 194 (307)
++.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 77775
No 305
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.9e-16 Score=126.04 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=75.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
++|||+|||.++|+++|+++|+ .||.|.+++|++++. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999996 999999999999965 78999999999999999999999999999999999999987
Q ss_pred CCC
Q 021788 289 KKA 291 (307)
Q Consensus 289 k~~ 291 (307)
+..
T Consensus 79 ~~~ 81 (166)
T 3md3_A 79 SQQ 81 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 306
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=1.5e-16 Score=120.47 Aligned_cols=87 Identities=16% Similarity=0.312 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCce-EEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
.....|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|+|..+.+.+..+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344568899999999999999999999999999888643 477 99999999999999999999999776689999
Q ss_pred EeccCCCCCCccc
Q 021788 192 NWATFSGSDRRTE 204 (307)
Q Consensus 192 ~~a~~~~~~~~~~ 204 (307)
.|++......+..
T Consensus 101 ~~ak~~~l~v~~n 113 (130)
T 3zzy_A 101 DFSKLTSLNVKYN 113 (130)
T ss_dssp EECSCSSCCCCCC
T ss_pred EecCCCceeEEec
Confidence 9998775544433
No 307
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=5e-16 Score=117.11 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCce-EEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
...|||+||++.+|+++|+++|+.||.|.+|+++. + .|| |||+|.+.++|..|++.|+|..|.+....|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34578999999999999999999999999999865 2 276 9999999999999999999999977778999999
Q ss_pred ccCCCCCC
Q 021788 194 ATFSGSDR 201 (307)
Q Consensus 194 a~~~~~~~ 201 (307)
++......
T Consensus 99 Ak~~~l~v 106 (124)
T 2e5i_A 99 ARPTRLNV 106 (124)
T ss_dssp CSCSCCCC
T ss_pred ecCCccee
Confidence 98765433
No 308
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.8e-16 Score=128.58 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHh--CCCCCCCCCCceEEEeccCCCCCCc----ccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEE
Q 021788 166 SRAAAEKVLQSY--SGSLMPNTDQPFRLNWATFSGSDRR----TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA 239 (307)
Q Consensus 166 ~~~~a~~a~~~l--~g~~~~~~~~~v~~~~a~~~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i 239 (307)
+.+.+..|++.. ....+...+..++.. ...+.... ......++|||+|||+++|+++|+++|+ .||.|..|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~--~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v 139 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRS--PSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNI 139 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEEC--TTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEec--ccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEE
Confidence 677888888866 333444444444333 11111100 1123458999999999999999999996 99999999
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCC
Q 021788 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (307)
Q Consensus 240 ~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k 289 (307)
+|.++. ++.++|||||+|++.++|.+|+..++ ..|+|+.|+|.+++.-
T Consensus 140 ~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 140 QMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 999986 48999999999999999999996554 5999999999997653
No 309
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=5.1e-16 Score=113.99 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 35678999999999999999999999999999998873 5999999999999999999999998 5778999
Q ss_pred EeccCCCCC
Q 021788 192 NWATFSGSD 200 (307)
Q Consensus 192 ~~a~~~~~~ 200 (307)
.|+......
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 998765543
No 310
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1e-16 Score=118.84 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
.....++|||+|||+++++++|+++|+.|| .|..+++.. +.++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i 97 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF--RGSVI 97 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 344568999999999999999999999999 899998853 34789999999999999999999999999 66788
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
+|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 88887644
No 311
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=116.70 Aligned_cols=81 Identities=21% Similarity=0.461 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 346789999999999999999999999999999999976 58999999999999999999999998 5678899
Q ss_pred EeccCCCCC
Q 021788 192 NWATFSGSD 200 (307)
Q Consensus 192 ~~a~~~~~~ 200 (307)
.|+......
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4g_A 94 YWGKESPDM 102 (109)
T ss_dssp ECCCCCCSS
T ss_pred EecCCCCCC
Confidence 998765443
No 312
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.8e-16 Score=131.96 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
..++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 467999999999999999999996 9999999999999889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 021788 287 TPKK 290 (307)
Q Consensus 287 ~~k~ 290 (307)
..+.
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7654
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=112.55 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....++|||+|||+++++++|+++|+.||.|.+| .++.++.+|. |||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3457899999999999999999999999999999 4888775543 99999999999999999999999 577888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.++...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8888755
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=125.80 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999999 567788
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.|+...
T Consensus 161 V~~a~~~ 167 (177)
T 2f3j_A 161 IQLVASQ 167 (177)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 8887643
No 315
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=6.9e-17 Score=124.65 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.|| |++|+|+.|+. |+++|||||+|.+.++|++|| .+++..+.+ +.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g--R~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH--RYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS--CCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC--EEEE
Confidence 345678999999999999999999999999 67999999985 999999999999999999999 689999854 4566
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 6555543
No 316
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=4.7e-16 Score=112.83 Aligned_cols=77 Identities=16% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
...+.++|||+|||+ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 456788999999998 99999999999999999999883 58999999999999999999999998 56778
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
++.++...
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 88887643
No 317
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=1.8e-16 Score=112.63 Aligned_cols=72 Identities=21% Similarity=0.455 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhC----C-------CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~----G-------~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (307)
.+.++|||+|||+++|+++|+++|+ .| | .|.++++.++ +|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3568999999999999999999996 89 8 8999988754 689999999999999999 99999
Q ss_pred eecCeeEEEEe
Q 021788 275 YCSSRPMRIDV 285 (307)
Q Consensus 275 ~i~g~~i~v~~ 285 (307)
.|+|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 318
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.3e-16 Score=115.86 Aligned_cols=82 Identities=28% Similarity=0.438 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
..+.++|||+|||+++++++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 4567899999999999999999 9999999999998874 577889999999999999999999999999 568
Q ss_pred ceEEEeccCCC
Q 021788 188 PFRLNWATFSG 198 (307)
Q Consensus 188 ~v~~~~a~~~~ 198 (307)
.+++.|+....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 88999987643
No 319
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=111.48 Aligned_cols=79 Identities=24% Similarity=0.444 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
.....++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|+|..+ .++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcE
Confidence 44567899999999999999999999999 899988765 47999999999999999999999999 5788
Q ss_pred eEEEeccCCCC
Q 021788 189 FRLNWATFSGS 199 (307)
Q Consensus 189 v~~~~a~~~~~ 199 (307)
|+|.|+.....
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.4e-16 Score=112.35 Aligned_cols=78 Identities=15% Similarity=0.308 Sum_probs=66.6
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCce
Q 021788 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v 189 (307)
...+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|+|..+. ++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF--GKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB--TTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC--CcEE
Confidence 346788999999999 99999999999999999999984 589999999999999999999999995 5666
Q ss_pred EEEeccCCC
Q 021788 190 RLNWATFSG 198 (307)
Q Consensus 190 ~~~~a~~~~ 198 (307)
+|.++....
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 666665443
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8e-18 Score=126.49 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
..+.++|||+|||+++++++|+++|+.||.|.+ |+++.++.+|.++|||||+|.+.++|.+|++.|+|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCC
Q 021788 184 NTDQPFRLNWATFSGS 199 (307)
Q Consensus 184 ~~~~~v~~~~a~~~~~ 199 (307)
.++.|+|.++.....
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 567788888775543
No 322
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=3.3e-16 Score=118.58 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
.....++|||+|||+++|+++|+++|+.| .|. +|+|+.|+. |+++|||||+|.+.++|.+||+. ++..|.+ +.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g--R~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGH--RY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT--BC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECC--EE
Confidence 34567889999999999999999999999 677 999999986 99999999999999999999995 6777854 45
Q ss_pred eEEEec
Q 021788 189 FRLNWA 194 (307)
Q Consensus 189 v~~~~a 194 (307)
|+|..+
T Consensus 113 I~V~~a 118 (126)
T 2hgm_A 113 IEVFKS 118 (126)
T ss_dssp CCCEEE
T ss_pred EEEEEC
Confidence 555554
No 323
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=120.42 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
.+.++|||+|||+++|+++|+++|+.||.| .+|+|+.|. +|+++|||||+|.+.++|.+||+. ++..|. ++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeE
Confidence 567899999999999999999999999975 689999985 899999999999999999999996 888884 445
Q ss_pred eEEEec
Q 021788 189 FRLNWA 194 (307)
Q Consensus 189 v~~~~a 194 (307)
|+|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 555444
No 324
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=8.9e-16 Score=120.62 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+..|+|..+ .++.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4456789999999999999999999999999999999876 568999999999999999999999998 577888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.|+..+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887654
No 325
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=109.64 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 446778999999999999999999999999999999984 3999999999999999999999998 567888
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
+.++....
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 88887653
No 326
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.8e-16 Score=110.55 Aligned_cols=79 Identities=13% Similarity=0.277 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEE
Confidence 446778999999999999999999999999999999874 3999999999999999999999999 578899
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
+.++.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999876543
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=3.2e-16 Score=111.81 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=65.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|. .+++..+.+.++.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999874 6799999999999998 356777766789999
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
+.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998754
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=1.1e-16 Score=117.44 Aligned_cols=80 Identities=33% Similarity=0.538 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ ++..+ .++.+.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEE
Confidence 456899999999999999999999999999999999998 99999999999999999999999 77777 45566666
Q ss_pred eccCC
Q 021788 193 WATFS 197 (307)
Q Consensus 193 ~a~~~ 197 (307)
++...
T Consensus 82 ~a~~~ 86 (102)
T 2xs2_A 82 PAIRK 86 (102)
T ss_dssp EEEEC
T ss_pred ECCcC
Confidence 66543
No 329
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.3e-16 Score=124.19 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhcCceec---CeeE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~--~~~g~afV~F~~~~~A~~A~~~l~g~~i~---g~~i 281 (307)
..++|||+|||+++|+++|+++|+ .||.|.+++|++++.++ +++|||||+|.+.++|.+|+..|||..+. ++.|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467999999999999999999996 99999999999998876 89999999999999999999999998775 7889
Q ss_pred EEEecCCCCCC
Q 021788 282 RIDVATPKKAS 292 (307)
Q Consensus 282 ~v~~a~~k~~~ 292 (307)
.+.++.++...
T Consensus 81 ~~~~~~~~~~~ 91 (175)
T 3nmr_A 81 QMKPADSEKNN 91 (175)
T ss_dssp EEEECGGGCCS
T ss_pred EEccccccccc
Confidence 99998876543
No 330
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=8.6e-16 Score=133.29 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=76.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 279 (307)
+..++++|||+|||+++|+++|+ ++|+ .||.|.+|+|++ +++++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 34578899999999999999977 8996 999999999886 578999999999999999999999999999999
Q ss_pred eEEEEecCCCC
Q 021788 280 PMRIDVATPKK 290 (307)
Q Consensus 280 ~i~v~~a~~k~ 290 (307)
.|+|.|++++.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999998765
No 331
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-15 Score=111.90 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=71.9
Q ss_pred cCCCCCeEEEcCCCCCCC-----------HHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 204 EACSDLSIFVGDLAPDVT-----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
...++++|+|.||..... +++|+++|+ +||.|.+|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 345788999999954432 689999996 9999999966 553 379999999999999999999999
Q ss_pred CceecCeeEEEEecCCCCCC
Q 021788 273 GVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 273 g~~i~g~~i~v~~a~~k~~~ 292 (307)
|..|+|+.|+|.|+.++..-
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999987543
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1e-15 Score=113.79 Aligned_cols=76 Identities=22% Similarity=0.408 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
....++|||+|||++ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 345689999999999 999999999999999999988 458999999999999999999999999 567788
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
|.++...
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8887643
No 333
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-16 Score=118.74 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=66.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCC----HHH----HHHHHH--HhCCCC
Q 021788 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (307)
Q Consensus 116 ~~l~v~nL----p~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 181 (307)
+.|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred CCCCCCceEEEec
Q 021788 182 MPNTDQPFRLNWA 194 (307)
Q Consensus 182 ~~~~~~~v~~~~a 194 (307)
+. ++.++|.+.
T Consensus 83 I~--Gr~irV~ln 93 (136)
T 2j8a_A 83 IM--GFKFEVILN 93 (136)
T ss_dssp ET--TEEEEEEEC
T ss_pred ec--CcEEEEEEC
Confidence 94 555555543
No 334
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.6e-16 Score=124.76 Aligned_cols=80 Identities=28% Similarity=0.520 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
++++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 467999999999999999999996 99999999999999999999999999999999999997 467899999999998
Q ss_pred CCC
Q 021788 287 TPK 289 (307)
Q Consensus 287 ~~k 289 (307)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 765
No 335
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=105.20 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 114 ETKT-IWIGDLFHWMDETF----LHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 114 ~~~~-l~v~nLp~~~t~~~----l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
++.+ |||+|||+++++++ |+++|+.| |.|.+| +| |+|||.|.+.++|.+|++.|+|..+ .++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCc
Confidence 4455 99999999999998 55899999 499998 34 9999999999999999999999999 789
Q ss_pred ceEEEeccCCCCCCc
Q 021788 188 PFRLNWATFSGSDRR 202 (307)
Q Consensus 188 ~v~~~~a~~~~~~~~ 202 (307)
++++.+++.......
T Consensus 75 ~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 75 RIIVSFTPKNRELCE 89 (96)
T ss_dssp CCEEESSCCSCCCCC
T ss_pred eEEEEecCCCcceeE
Confidence 999999987655433
No 336
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=114.36 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3467999999999999999999999999999998874 458999999999999999999999999 56778888
Q ss_pred eccC
Q 021788 193 WATF 196 (307)
Q Consensus 193 ~a~~ 196 (307)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 8764
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=109.57 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+++|+++|+++|+.||.|.+| +.++.+|+ ||||+|.+.++|.+|++ |+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEE
Confidence 3456899999999999999999999999999987 56665665 99999999999999999 999999 4566666
Q ss_pred EeccCCC
Q 021788 192 NWATFSG 198 (307)
Q Consensus 192 ~~a~~~~ 198 (307)
.++....
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 6765443
No 338
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=108.74 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 80 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 80 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 4456789999996 89999999999999999999884 4568999999999999999999999998 678899
Q ss_pred EEeccCCCC
Q 021788 191 LNWATFSGS 199 (307)
Q Consensus 191 ~~~a~~~~~ 199 (307)
|.|+.....
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 339
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=110.71 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC-CCCCCCCCce
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPF 189 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~~~~~~v 189 (307)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.|+| ..+ .++.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEE
Confidence 356789999999999999999999999999 6666553 358999999999999999999999 888 56888
Q ss_pred EEEeccCCCC
Q 021788 190 RLNWATFSGS 199 (307)
Q Consensus 190 ~~~~a~~~~~ 199 (307)
++.|+.....
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 8888876543
No 340
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=113.34 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=67.9
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC---CCCC
Q 021788 112 NDETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTD 186 (307)
Q Consensus 112 ~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~~~~ 186 (307)
..++++||| |||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 356789999 789999999999999999999999987643 58999999999999999999999876 3346
Q ss_pred CceEEEeccC
Q 021788 187 QPFRLNWATF 196 (307)
Q Consensus 187 ~~v~~~~a~~ 196 (307)
+++.+.|+..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 7788887753
No 341
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.3e-15 Score=111.99 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhhCCCeeEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 206 CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 206 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~~G~v~~i~i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
.++++|.|.|+ +..+. ++||+++|+ +||.|.+|+|.+++.+ ++++|+|||+|++.++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 46789999997 33343 479999996 9999999999998764 36799999999999999999999999
Q ss_pred ceecCeeEEEEecCCC
Q 021788 274 VYCSSRPMRIDVATPK 289 (307)
Q Consensus 274 ~~i~g~~i~v~~a~~k 289 (307)
+.|+||.|+|.|+...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998653
No 342
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-16 Score=113.36 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 34567899999999999999999999999988666 34788999999999999999999999999988 567889
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
+.++....
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 98886543
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.91 Aligned_cols=65 Identities=18% Similarity=0.380 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
...++|||+|||+++|+++|+++|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 4678999999999999999999999999999 888888777 7999999999999999999999883
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.3e-15 Score=127.60 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 205 ACSDLSIFVGDLAPDV---------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~---------t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
....++|||+||+..+ ++++|+++|+ .||.|++|+|+.+ +|||||+|.+.++|.+|++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 7999999996 9999999999853 7899999999999999999999999
Q ss_pred e------------cCeeEEEEecCCCCCC
Q 021788 276 C------------SSRPMRIDVATPKKAS 292 (307)
Q Consensus 276 i------------~g~~i~v~~a~~k~~~ 292 (307)
| .|+.|.|+||+.+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeccccccccccCCCCEEEEEEccCCCCH
Confidence 9 8999999999976543
No 345
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=2.4e-15 Score=137.82 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEE
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 191 (307)
....++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|+|..| .+..|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999 5677888
Q ss_pred EeccCC
Q 021788 192 NWATFS 197 (307)
Q Consensus 192 ~~a~~~ 197 (307)
.|+...
T Consensus 177 ~~a~~~ 182 (437)
T 3pgw_S 177 DVERGR 182 (437)
T ss_pred EEeCCC
Confidence 887654
No 346
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=2.2e-15 Score=126.85 Aligned_cols=81 Identities=26% Similarity=0.451 Sum_probs=74.8
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 203 TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 203 ~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
....++++|||+|||+ ++++++|+++|+ .||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3345788999999999 999999999996 99999999999874 6899999999999999999999999999999
Q ss_pred EEEecCCC
Q 021788 282 RIDVATPK 289 (307)
Q Consensus 282 ~v~~a~~k 289 (307)
+|.|++++
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99999865
No 347
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=2.6e-15 Score=120.30 Aligned_cols=80 Identities=18% Similarity=0.452 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++|+++|+++|+.||.|.++++..++.+|.++|+|||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 3478999999999999999999999999999999999988999999999999999999999999999999 56778887
Q ss_pred ec
Q 021788 193 WA 194 (307)
Q Consensus 193 ~a 194 (307)
|+
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 348
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=2.5e-15 Score=112.51 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHHhhhCCCeeEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 207 SDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 207 ~~~~l~v~nlp~-----~~t~~~l~~~F~~~~G~v~~i~i~~d~~----~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
++++|+|.|+-. +-.++||+++|+ +||.|.+|+|.+++. +++++|++||+|.+.++|.+|+..|||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 678999999742 224699999996 999999999999865 3577899999999999999999999999999
Q ss_pred CeeEEEEecCC
Q 021788 278 SRPMRIDVATP 288 (307)
Q Consensus 278 g~~i~v~~a~~ 288 (307)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=121.58 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--E---eecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK--V---IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~--~---~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
....++|||+|||+++|+++|+++|+.||.|.++. + +....+|.++|||||+|.+.++|.+|+..|+|..+ .+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 45678999999999999999999999999987741 1 11123789999999999999999999999999999 57
Q ss_pred CceEEEeccCCC
Q 021788 187 QPFRLNWATFSG 198 (307)
Q Consensus 187 ~~v~~~~a~~~~ 198 (307)
+.|+|.++....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 888888886543
No 350
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.6e-15 Score=107.97 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.| .|.++++. +++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 356899999999999999999999999 99999884 5679999999999999999999999998 67788888
Q ss_pred eccCC
Q 021788 193 WATFS 197 (307)
Q Consensus 193 ~a~~~ 197 (307)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 87643
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=3.1e-15 Score=112.04 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC---ce
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ---PF 189 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~---~v 189 (307)
...++|||+|||+++++++|+++|..||+|.+|.|+.+ |||||+|.+.++|.+||+.|+|..|.+..+ .+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999876 799999999999999999999999966542 26
Q ss_pred EEEeccCC
Q 021788 190 RLNWATFS 197 (307)
Q Consensus 190 ~~~~a~~~ 197 (307)
++..+...
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665543
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=5.3e-16 Score=124.86 Aligned_cols=86 Identities=19% Similarity=0.472 Sum_probs=75.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 021788 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (307)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v 283 (307)
.....++|||+|||+++|+++|+++|+ .||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 345678999999999999999999996 8998777 34445567889999999999999999999 69999999999999
Q ss_pred EecCCCCCC
Q 021788 284 DVATPKKAS 292 (307)
Q Consensus 284 ~~a~~k~~~ 292 (307)
.++.++...
T Consensus 86 ~~~~~~~~~ 94 (175)
T 1fje_B 86 EKPKGRDSK 94 (175)
T ss_dssp ECCCCSSCS
T ss_pred ecCCCcccc
Confidence 999987543
No 353
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=7.8e-15 Score=120.26 Aligned_cols=85 Identities=18% Similarity=0.455 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|||+++++++|+++|+.||.|.++++..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 187 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLL 187 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345778999999999999999999999999999999999988999999999999999999999999999999 567888
Q ss_pred EEeccCC
Q 021788 191 LNWATFS 197 (307)
Q Consensus 191 ~~~a~~~ 197 (307)
+.++...
T Consensus 188 v~~a~~~ 194 (198)
T 2yh0_A 188 VQRASVG 194 (198)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8888754
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=6.6e-16 Score=113.36 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 021788 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (307)
Q Consensus 213 v~nlp~~~t~~~l~~~F------------~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 280 (307)
+.+|++.+++++|+++| + +||.|.+|+|.++.. ++++|||||+|.+.++|.+|+..|||+.|+||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777887777666 8 999999999998864 789999999999999999999999999999999
Q ss_pred EEEEec
Q 021788 281 MRIDVA 286 (307)
Q Consensus 281 i~v~~a 286 (307)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=106.14 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++ +++..+...++.|++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 45789999999999999999999999999999999864 67999999999999975 4555565578899999
Q ss_pred eccCCCC
Q 021788 193 WATFSGS 199 (307)
Q Consensus 193 ~a~~~~~ 199 (307)
++.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876544
No 356
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=122.52 Aligned_cols=76 Identities=28% Similarity=0.480 Sum_probs=71.6
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEec
Q 021788 208 DLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (307)
Q Consensus 208 ~~~l~v~nlp~-~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a 286 (307)
+++|||+|||+ ++++++|+++|+ .||.|.+|+|++++ +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57999999999 999999999996 99999999998774 689999999999999999999999999999999999
Q ss_pred CCC
Q 021788 287 TPK 289 (307)
Q Consensus 287 ~~k 289 (307)
+++
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.9e-14 Score=105.69 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 113 DETKTIWIGDLFH-----WMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 113 ~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
.++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.+ +.++|+|||+|.+.++|.+|++.|+|..+ .+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 4678999999963 2378999999999999999999998654 68999999999999999999999999999 56
Q ss_pred CceEEEecc
Q 021788 187 QPFRLNWAT 195 (307)
Q Consensus 187 ~~v~~~~a~ 195 (307)
+.|.+.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 788888875
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=2e-14 Score=108.49 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceE
Q 021788 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 190 (307)
.....++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3456789999996 69999999999999999999986 4568999999999999999999999998 678888
Q ss_pred EEeccCCC
Q 021788 191 LNWATFSG 198 (307)
Q Consensus 191 ~~~a~~~~ 198 (307)
|.|+....
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 88887654
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=7.7e-15 Score=104.06 Aligned_cols=71 Identities=17% Similarity=0.505 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 181 (307)
...++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|+|..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467899999999999999999999999 8 8999998865 589999999999999999 999999
Q ss_pred CCCCCCceEEE
Q 021788 182 MPNTDQPFRLN 192 (307)
Q Consensus 182 ~~~~~~~v~~~ 192 (307)
+. ++.+++.
T Consensus 77 ~~--g~~l~V~ 85 (87)
T 2hzc_A 77 FQ--GQSLKIR 85 (87)
T ss_dssp ET--TEECEEE
T ss_pred EC--CeEEEEe
Confidence 94 4555554
No 360
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.8e-14 Score=122.39 Aligned_cols=78 Identities=29% Similarity=0.527 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
....++|||+|||+++|+++|+++|+ .||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 45668999999999999999999996 9999999998643 6899999999999999999999999999999999
Q ss_pred ecCCC
Q 021788 285 VATPK 289 (307)
Q Consensus 285 ~a~~k 289 (307)
|+.+.
T Consensus 92 ~a~~~ 96 (261)
T 3sde_A 92 FATHG 96 (261)
T ss_dssp ECCCS
T ss_pred ecccC
Confidence 99864
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-13 Score=99.56 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCCCc
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~~~ 294 (307)
..+++++|+++|+ +||.|.+|+|+ ++++|||||+|++.++|.+|+..+++ +.|+.|+|+|++++..+..
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDAS 95 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCCS
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCCC
Confidence 5799999999996 99999999987 46789999999999999999988554 6799999999998865443
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.6e-14 Score=116.03 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEEe
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 193 (307)
..++|||+|||+++|+++|+++|+.||.|.+|++.++. +|.++|||||+|.+.++|.+|+..++. .+ .++.|+|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ-KY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC-EE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC-eE--CCEEEEEEE
Confidence 35799999999999999999999999999999999987 599999999999999999999986654 56 567777777
Q ss_pred cc
Q 021788 194 AT 195 (307)
Q Consensus 194 a~ 195 (307)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 65
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=6e-14 Score=117.46 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 112 NDETKTIWIGDLFHWM---------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
....++|||+||+..+ ++++|+++|+.||+|.+|+|+.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 79999999999999999999864 58999999999999999999999998
Q ss_pred C----------CCCCceEEEeccCCC
Q 021788 183 P----------NTDQPFRLNWATFSG 198 (307)
Q Consensus 183 ~----------~~~~~v~~~~a~~~~ 198 (307)
. +.++.|.|.|+...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 2 156788999987543
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-13 Score=100.76 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 111 TNDETKTIWIGDLFHWMD-----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
....+++|+|.||....+ +++|+++|+.||.|.+|.| .++ .++|||||+|.+.++|.+|++.|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954332 5899999999999999965 554 3789999999999999999999999
Q ss_pred CCCCCCCCceEEEeccCCC
Q 021788 180 SLMPNTDQPFRLNWATFSG 198 (307)
Q Consensus 180 ~~~~~~~~~v~~~~a~~~~ 198 (307)
..+ .++.|++.++....
T Consensus 87 ~~~--~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWF--GGRQITAQAWDGTT 103 (112)
T ss_dssp CEE--TTEECEEEECCSCC
T ss_pred CEE--CCcEEEEEEeCCCC
Confidence 999 57888888886543
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=1.7e-13 Score=101.82 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 206 CSDLSIFVGDLAPDV----------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~----------t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.++++|.|.|+-..- .++||+++|+ +||.|.+|.|.++. .+|+|||+|.+.++|.+|+..|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 357788888864322 2368899996 99999999986652 58999999999999999999999999
Q ss_pred ecCeeEEEEecCC
Q 021788 276 CSSRPMRIDVATP 288 (307)
Q Consensus 276 i~g~~i~v~~a~~ 288 (307)
|+||.|+|.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999864
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2.5e-13 Score=119.67 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec---Ce
Q 021788 205 ACSDLSIFVGD--LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SR 279 (307)
Q Consensus 205 ~~~~~~l~v~n--lp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~---g~ 279 (307)
..++++|||+| |++.+||++|+++|+ +||.|++|.+.. +||||||+|++.++|.+|++.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 56788999999 578999999999996 999999887643 4799999999999999999999999873 45
Q ss_pred --eEEEEecC
Q 021788 280 --PMRIDVAT 287 (307)
Q Consensus 280 --~i~v~~a~ 287 (307)
.|.|.|++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68889885
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.9e-13 Score=98.11 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCcCceEEEEeCCHHHHHHHHHHhCCC
Q 021788 113 DETKTIWIGDL--FHWMD--------ETFLHNCFSHTGQVVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (307)
Q Consensus 113 ~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~g~ 180 (307)
.++++|.|.|+ +..+. +++|++.|++||.|.+|+|.++..+ +.++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33443 3689999999999999999988754 468999999999999999999999999
Q ss_pred CCCCCCCceEEEecc
Q 021788 181 LMPNTDQPFRLNWAT 195 (307)
Q Consensus 181 ~~~~~~~~v~~~~a~ 195 (307)
.+ .++.|++.+..
T Consensus 83 ~f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KF--ANRVVVTKYCD 95 (105)
T ss_dssp EE--TTEECEEEEEC
T ss_pred Ee--CCCEEEEEEeC
Confidence 99 56777777754
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=8.9e-13 Score=98.59 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEEeecCC----CCCcCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021788 114 ETKTIWIGDLFH--WM---DETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (307)
Q Consensus 114 ~~~~l~v~nLp~--~~---t~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 184 (307)
++++|+|.|+-. ++ .+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 678999999942 22 3689999999999999999999864 457789999999999999999999999999
Q ss_pred CCCceEEEecc
Q 021788 185 TDQPFRLNWAT 195 (307)
Q Consensus 185 ~~~~v~~~~a~ 195 (307)
.++.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 56777777754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=9.4e-13 Score=116.04 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC---CC
Q 021788 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP---NT 185 (307)
Q Consensus 111 ~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---~~ 185 (307)
...++++|||+| |++.+||++|+++|++||.|.+|++.. +||||||+|.+.++|++|++.|||..+. |.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456788999999 578999999999999999999987753 4689999999999999999999999873 23
Q ss_pred CCceEEEeccCCCCCC-cccCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 021788 186 DQPFRLNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFS 230 (307)
Q Consensus 186 ~~~v~~~~a~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (307)
+..+.++|........ .....+....+ +|..+++++=..++.
T Consensus 88 ~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~ 130 (345)
T 3tht_A 88 KITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLE 130 (345)
T ss_dssp EEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHT
T ss_pred ceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHH
Confidence 3367777764221100 01111222333 345677766666664
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=8.4e-12 Score=90.37 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 114 ETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 114 ~~~~l~v~nLp-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
..++|.|.-.. ..+++++|+++|+.||.|.+|+|+ ++++|||||+|.+.++|..|++.+++ + .+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g 79 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--VD 79 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--SS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--CC
Confidence 35677776654 458999999999999999999988 36789999999999999999998655 3 57
Q ss_pred CceEEEeccCCCC
Q 021788 187 QPFRLNWATFSGS 199 (307)
Q Consensus 187 ~~v~~~~a~~~~~ 199 (307)
++|+|.|+.....
T Consensus 80 ~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 NPLKISWLEGQPQ 92 (100)
T ss_dssp SBCEEECSSCCCC
T ss_pred CeEEEEEccCCCC
Confidence 7899999876543
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.6e-13 Score=100.61 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=60.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 120 IGDLFHWMDETFLHNCF------------SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 120 v~nLp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
+.+|++.+++++|++.| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 45677777777777666 999999999999887 488999999999999999999999999999 456
Q ss_pred ceEEEec
Q 021788 188 PFRLNWA 194 (307)
Q Consensus 188 ~v~~~~a 194 (307)
.|++.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 6666654
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=85.28 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 206 CSDLSIFVGDLA----PDVTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 206 ~~~~~l~v~nlp----~~~t~----~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
++..||+|.-++ ..+-+ .+|.+.|+ .||+|..++|..|+ +||+|.+.++|.+|+. |||..++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 355677776655 23333 67889996 99999999999873 8999999999999997 9999999
Q ss_pred CeeEEEEecCCC
Q 021788 278 SRPMRIDVATPK 289 (307)
Q Consensus 278 g~~i~v~~a~~k 289 (307)
||.|+|++++|.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999999875
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.2e-11 Score=90.59 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHhc--CceecCee
Q 021788 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD-ENERSRAMTEMN--GVYCSSRP 280 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~-~~~A~~A~~~l~--g~~i~g~~ 280 (307)
....+.|+|+||++. +++++|+++|+ .||.|..|.+.++.. .|||+|.+ .++|..|+..|| +..|.|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 457889999999999 99999999997 899999999988865 49999999 899999999995 68899999
Q ss_pred EEEEecCCCC
Q 021788 281 MRIDVATPKK 290 (307)
Q Consensus 281 i~v~~a~~k~ 290 (307)
++++..+-..
T Consensus 88 ~~~evL~Gee 97 (121)
T 1owx_A 88 VTWEVLEGEV 97 (121)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECCCHH
Confidence 9998766443
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=7.1e-11 Score=87.62 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCC
Q 021788 113 DETKTIWIGDLFHWM----------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 182 (307)
.++++|.|.|+-..- .+++|++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457889999984322 234789999999999999987653 489999999999999999999999999
Q ss_pred CCCCCceEEEecc
Q 021788 183 PNTDQPFRLNWAT 195 (307)
Q Consensus 183 ~~~~~~v~~~~a~ 195 (307)
.++.|++.+..
T Consensus 81 --~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 --AGKMITAAYVP 91 (114)
T ss_dssp --TTEECEEEEEC
T ss_pred --CCEEEEEEEEc
Confidence 56777777765
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=1.4e-10 Score=96.82 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEEecC----CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCC
Q 021788 219 DVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~i~i~~d~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~ 288 (307)
.-.+++|++.|+ +||.|.++.|.++. .+++++|++||+|.+.++|.+|+..|||+.++||.|++.|...
T Consensus 140 ~e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346789999996 99999999998654 3458999999999999999999999999999999999999764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.4e-10 Score=82.64 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCC-HHHHHHHHHHhCCCCCCCCCCc
Q 021788 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
.....+.|+|+||++. +++++|+++|+.||+|..|.+..+.. .|||.|.+ .++|..|++.++...+...+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567889999999999 99999999999999999999998874 59999999 8999999999964444335555
Q ss_pred eEEEe
Q 021788 189 FRLNW 193 (307)
Q Consensus 189 v~~~~ 193 (307)
+++..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.2e-10 Score=80.27 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 021788 205 ACSDLSIFVGDLAPD-----VTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (307)
Q Consensus 205 ~~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (307)
.++..||+|.-++.+ +-+ .+|.+.|+ .||+|..++|..|+ +||+|.+.++|.+||+ |||..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 356678888877632 222 56889996 89999999999874 9999999999999997 99999
Q ss_pred ecCeeEEEEecCC
Q 021788 276 CSSRPMRIDVATP 288 (307)
Q Consensus 276 i~g~~i~v~~a~~ 288 (307)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998544
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.2e-08 Score=72.71 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhC-----CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~-----G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
..++|-|.|||..+++.-|+.++. +| |.++.|.+..|- +-|+|+|+|..+|.+|.-.|+|.+|+||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve-~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQ-EEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHH-HHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHh-hhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 467899999999999999999995 99 999999988774 359999999999999999999999999999
Q ss_pred EEEe
Q 021788 282 RIDV 285 (307)
Q Consensus 282 ~v~~ 285 (307)
+|--
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=7.3e-09 Score=72.17 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCC----C-CCH---HHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC
Q 021788 114 ETKTIWIGDLFH----W-MDE---TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (307)
Q Consensus 114 ~~~~l~v~nLp~----~-~t~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~ 185 (307)
+.-||+|.-++. . ..+ .+|.+.|..||.|..++++.|+ +||+|.+.++|.+|++ |+|..+ .
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~ 74 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--L 74 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--T
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--C
Confidence 345677766551 2 332 5788999999999999999875 8999999999999999 999998 7
Q ss_pred CCceEEEeccCCCC
Q 021788 186 DQPFRLNWATFSGS 199 (307)
Q Consensus 186 ~~~v~~~~a~~~~~ 199 (307)
++.+++..+.+...
T Consensus 75 Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 75 NRTITIALKSPSGP 88 (91)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEeCCCCcc
Confidence 78888888776543
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.8e-08 Score=82.73 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHHHhhcCCeeEEEEeecCC----CCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCC
Q 021788 115 TKTIWIGDLF-----HWMDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (307)
Q Consensus 115 ~~~l~v~nLp-----~~~t~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~ 185 (307)
.+.+.+.|+- .+-.+++|++.|++||.|.++.|.++.. +++++|++||+|.+.++|.+|+..|+|+.+ .
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 3445555542 2345678999999999999999986543 458899999999999999999999999999 5
Q ss_pred CCceEEEecc
Q 021788 186 DQPFRLNWAT 195 (307)
Q Consensus 186 ~~~v~~~~a~ 195 (307)
++.|.+.+..
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 6777777754
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=9e-08 Score=66.99 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 113 DETKTIWIGDLFHW------MDE---TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 113 ~~~~~l~v~nLp~~------~t~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
++.-||+|.-++.+ ..+ .+|.+.|..||.|..++++.|+ +||+|.+.++|.+|++ |+|..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee-
Confidence 34568888777642 332 4688899999999999999876 9999999999999999 999999
Q ss_pred CCCCceEEEec
Q 021788 184 NTDQPFRLNWA 194 (307)
Q Consensus 184 ~~~~~v~~~~a 194 (307)
.++.+++.+.
T Consensus 83 -~Gr~L~V~~k 92 (95)
T 1ufw_A 83 -KGRAVKISGP 92 (95)
T ss_dssp -TTEEEEEECC
T ss_pred -CCeEEEEecc
Confidence 5666666653
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.6e-06 Score=60.83 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 021788 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (307)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 186 (307)
.+..++|-|-|||..+++..|+.++.++ |.++.|.+..|. +-|+|+|.|...|-+|.=.|+|..+. +
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~--g 89 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ--G 89 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET--T
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec--C
Confidence 3457899999999999999999999999 999999999887 47999999999999999889999984 4
Q ss_pred CceEE
Q 021788 187 QPFRL 191 (307)
Q Consensus 187 ~~v~~ 191 (307)
+.+++
T Consensus 90 r~Lr~ 94 (117)
T 2l9w_A 90 KVIRS 94 (117)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.10 E-value=8.7e-06 Score=57.92 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 207 SDLSIFVGDLAPDV-TD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 207 ~~~~l~v~nlp~~~-t~----~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
-.++|.|.||+.++ .. +.++++|. .|+++.....++.-. -..|.|.+.++|.+|...||+..|.|+.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 35689999998864 33 56688996 999999887776532 47899999999999999999999999999
Q ss_pred EEEecCCCC
Q 021788 282 RIDVATPKK 290 (307)
Q Consensus 282 ~v~~a~~k~ 290 (307)
+|-|+.+-.
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999998653
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=4.8e-05 Score=53.85 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSH-----TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~-----~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 187 (307)
...++|.|.|||..+.++.|.-+|+. -|+|.++.... +-|+|+|.+.+.|++.|+. ....|.+ .
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~--~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG--A 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS--S
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC--e
Confidence 45679999999999999999999987 24888887765 2589999999999999984 2444533 4
Q ss_pred ceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCC
Q 021788 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVT 221 (307)
Q Consensus 188 ~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t 221 (307)
.+.|.-.. .....+|++.+|+..++
T Consensus 75 ~LsV~P~~---------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP---------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC---------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC---------CCCcceEeeecCCCCCC
Confidence 44443322 22556788999988765
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.78 E-value=9e-05 Score=51.80 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
++|.|++||+.+||+++.+.+.....+.....+..+.+.+ ...-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998876666665443332 2356999999999999999999998763
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.67 E-value=0.00026 Score=49.45 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhcCceec
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~--~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 277 (307)
++|.|++||+.+||+++.+.+. ....+........+.+. ...+-|+|.|.+.+++..-.+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999996 78887776665544322 23367999999999999999999998873
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=0.00079 Score=47.64 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhh----CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSK----YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i 281 (307)
...++|.|.|||..+.++.|.-+|.++ -|.|+++.... +-|+|+|.+.+.|.+++. -..+.|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 356789999999999999999999632 35677776543 359999999999999883 33567888999
Q ss_pred EEEecCCCCCCC
Q 021788 282 RIDVATPKKASG 293 (307)
Q Consensus 282 ~v~~a~~k~~~~ 293 (307)
.|.-..++...+
T Consensus 77 sV~P~~~~~~~r 88 (104)
T 2dhx_A 77 SLRPAPPRAPAR 88 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEcCCCCCcce
Confidence 998766665433
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.0002 Score=50.93 Aligned_cols=77 Identities=8% Similarity=0.006 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCc
Q 021788 114 ETKTIWIGDLFHWM-DE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (307)
Q Consensus 114 ~~~~l~v~nLp~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 188 (307)
-.++|+|.||+.++ +. +.++++|..|+++......++- .-..|.|.+.++|.+|...|++..+ .+..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f--~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEF--LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEE--TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcccee--cCce
Confidence 45789999998765 22 4679999999999998887764 2579999999999999999999999 5568
Q ss_pred eEEEeccCCC
Q 021788 189 FRLNWATFSG 198 (307)
Q Consensus 189 v~~~~a~~~~ 198 (307)
+++-|+....
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 8988887443
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.46 E-value=0.00076 Score=47.13 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
-...++| ++|......||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445666 999999999999999999954 56666664 69999999999999999764
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.38 E-value=0.00081 Score=47.00 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
...+++| ++|..+...||.++|+ .||.|. |+.+-|. .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs-~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFS-AFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHT-TTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhh-ccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4457778 9999999999999997 999554 4555552 69999999999999998774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.00097 Score=48.73 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDV 285 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~i~v~~ 285 (307)
..+.|.|.++|...+ +.|.++|+ .||+|.+...... .-+-.|+|++..+|.+|| ..||..|+ +..|-|..
T Consensus 23 ~~~wVtVFGFp~~~~-~~VL~~F~-~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQASA-SYILLQFA-QYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGGH-HHHHHHHH-TTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHHH-HHHHHHHH-hhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 467899999999865 45567775 8999998876211 237899999999999999 77999998 47788877
Q ss_pred cC
Q 021788 286 AT 287 (307)
Q Consensus 286 a~ 287 (307)
-.
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.09 E-value=0.00081 Score=47.23 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC-C-cCceEEEEeCCHHHHHHHHHHhCCCCCC
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG-Q-SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g-~-~~g~afV~f~~~~~a~~a~~~l~g~~~~ 183 (307)
-+-+|.|+.||+.+||+++.+.+..+-++.....+..+.+- . ...-|||.|++.+++....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34579999999999999998888876554322222222221 1 1245899999999999999999998763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.08 E-value=0.0014 Score=45.96 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCC-C-CcccEEEEEeCCHHHHHHHHHHhcCcee
Q 021788 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-G-RTKGYGFVRFGDENERSRAMTEMNGVYC 276 (307)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~-~-~~~g~afV~F~~~~~A~~A~~~l~g~~i 276 (307)
..+.+|.|+.||+.+||+++.+.++ ..-++........+.+ + ..-..|+|.|.+.++...-.+.++|..|
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3567899999999999999988886 5555433332221111 1 1225689999999999999999999887
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.01 E-value=0.001 Score=46.69 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
..++| ++|......||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999 4467667664 69999999999999999875
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.00097 Score=46.76 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
.+++| ++|..+...||.++|+ .|| -..|..+-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 36777 9999999999999997 999 4455555552 69999999999999998774
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.0051 Score=44.93 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCCCCCCCCCCceEEE
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 192 (307)
...+-|.|-+.|... .+.|...|+.||+|.+..... ...+-.|.|.+..+|++||. .||..+.+ ...|-+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g-~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGE-SIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETT-TEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecC-CEEEEEE
Confidence 456789999999885 667888999999999887622 22589999999999999999 48888742 3444443
Q ss_pred e
Q 021788 193 W 193 (307)
Q Consensus 193 ~ 193 (307)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 3
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=59.63 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHH
Q 021788 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (307)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (307)
..++|+|. .+..+++.+|.++|+.||+|.++.+..++. -|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 44689997 899999999999999999999998876552 5999999999999877653
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.40 E-value=0.0035 Score=46.45 Aligned_cols=77 Identities=12% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEEecC------------CCC-CcccEEEEEeCCHHHHHHHHHHhcC
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDS------------NTG-RTKGYGFVRFGDENERSRAMTEMNG 273 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~-i~i~~d~------------~~~-~~~g~afV~F~~~~~A~~A~~~l~g 273 (307)
...|.|.+.|.+.+..-| +.|+ +||.|.+ +.+.++. ... ....+..|+|++..+|.+|| ..||
T Consensus 7 e~~VtVFGFp~~~~~~VI-~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVI-AYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp -CEEEEECCCGGGHHHHH-HHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred ceEEEEEecCHHHHHHHH-HHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 356888899887776555 6674 9999876 2211100 000 12467899999999999999 8899
Q ss_pred ceecCeeEEEEecC
Q 021788 274 VYCSSRPMRIDVAT 287 (307)
Q Consensus 274 ~~i~g~~i~v~~a~ 287 (307)
..|+|..|-|..-+
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887754
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=57.77 Aligned_cols=56 Identities=9% Similarity=0.214 Sum_probs=41.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (307)
..++|+|. ++..+++.+|.++|+ .||.|.++.+.+++ | -||+|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~-~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLS-QFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHG-GGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHH-hcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 34689997 899999999999997 99999998877653 2 499999999999987763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.38 E-value=0.046 Score=40.43 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecC--------CCCC-----cCceEEEEeCCHHHHHHHHHHhCCC
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNK--------QTGQ-----SEGYGFVEFYSRAAAEKVLQSYSGS 180 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-~~~~~~~--------~~g~-----~~g~afV~f~~~~~a~~a~~~l~g~ 180 (307)
...|.|-+.|.+.+ ..+.+.|++||.|.+ +.+.++. +..+ ...+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778876654 467788999999876 2211100 0011 24578999999999999998 5888
Q ss_pred CCCC
Q 021788 181 LMPN 184 (307)
Q Consensus 181 ~~~~ 184 (307)
.+.+
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 8854
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.35 E-value=0.7 Score=42.70 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
...++|+ ++..+...+|.++|+.||.+ +|+.+.|. .|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3466776 88888999999999999954 66655543 799999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.26 E-value=1.4 Score=40.66 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 021788 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (307)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (307)
..+++|+ +|..+...+|.+.|+ .||.| +|+.+.| ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4577776 899999999999996 99954 4554433 269999999999999999885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.60 E-value=6.1 Score=25.75 Aligned_cols=69 Identities=6% Similarity=0.131 Sum_probs=40.7
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhhCC----CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 021788 210 SIFVGDL-APDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (307)
Q Consensus 210 ~l~v~nl-p~~~t~~~l~~~F~~~~G----~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~ 284 (307)
+|+|..- -..+...+|..++....| .|-.|+|..+ |.||+-... .|..++..|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555322 234777888888863333 1345555422 678887654 4667888999999999999998
Q ss_pred ecC
Q 021788 285 VAT 287 (307)
Q Consensus 285 ~a~ 287 (307)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.43 E-value=29 Score=23.47 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcC-------ceecCe
Q 021788 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-------VYCSSR 279 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g-------~~i~g~ 279 (307)
..|-+.|-|+|..+...++.-... ..|---.+..+ .|-|+|+|.+.++-.-|+..|-+ .+|.|.
T Consensus 11 qnclikiinipqgtlkaevvlavr-hlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVR-HLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHH-TTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hCcEEEEEecCCCceeeeeEEeeh-hcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 457788999999998888877764 56654455433 25699999999999999987722 245566
Q ss_pred eEEEEecCC
Q 021788 280 PMRIDVATP 288 (307)
Q Consensus 280 ~i~v~~a~~ 288 (307)
...|--.-|
T Consensus 82 icdvistip 90 (129)
T 4eyt_A 82 ICDVISTIP 90 (129)
T ss_dssp EEEEECCCC
T ss_pred eeeeeecCC
Confidence 655544333
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=61.30 E-value=18 Score=25.02 Aligned_cols=69 Identities=6% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEecCCCCCC
Q 021788 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (307)
Q Consensus 215 nlp~~~t~~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~i~v~~a~~k~~~ 292 (307)
.++..+.-+||.....+.||.-.+++.. +.+ ..|-..+-+|-.+|++.|+-. ..-+.|+|-...++...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~~ 91 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGSTQ 91 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCCS
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cce-------EEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCCc
Confidence 5567899999998888899998888766 322 689999999999999888743 34456677666666443
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=60.02 E-value=31 Score=24.02 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEE----ecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~----~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
..++..+|++.++..|+.-.++.++ ..-..|.+.|||. .|+|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~-IYds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAK-LYEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 5788899999888677764333222 2223457777774 47777777654
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=59.13 E-value=6.5 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEE----ecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~----~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
..++..+|++.++..|+.-.++.++ ..-..|.+.|||. .|+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAK-YYYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEE-EESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 4688899999888777763333222 2222357778874 47888887754
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=54.20 E-value=6.1 Score=27.51 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEEecCC----CCCcccEEEEEeCCHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~~d~~----~~~~~g~afV~F~~~~~A~~ 266 (307)
..++..+|++.++..|+.-.++.++..-. .|.+.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788899888876676644444443322 2466677644 566666554
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=53.89 E-value=32 Score=24.00 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEE----EEecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAK----VIIDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~----i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
..++..+|++.++..|+.-.++. +...-..|++.|||. .|+|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAK-IYNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEE-EECCHHHHHhh
Confidence 57888999988876666533322 222323467778874 47888877653
No 410
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=51.35 E-value=12 Score=28.12 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEEec----CCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~~d----~~~~~~~g~afV~F~~~~~A~~A 267 (307)
..++..||++.++..|+.-.++.|+.. -..|.+.|||.| |+|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 468889999998766776343333321 123566788754 7888887654
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.84 E-value=61 Score=21.84 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhCC
Q 021788 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (307)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 179 (307)
...|-|.|-|+|..+-..++.-.....|.--.|..+. |.|.|.|.+.++-+.|+..|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 4578899999999999888888888888655554442 5799999999999999987743
No 412
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=47.50 E-value=60 Score=23.88 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEE----ecCCCCCcccEEEEEeCCHHHHHHH
Q 021788 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (307)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~i~i~----~d~~~~~~~g~afV~F~~~~~A~~A 267 (307)
..++..||++.+...|+.-.++.++ ..-..|.+.|||.| |+|.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4688999999998778764333222 22234567778754 7888887653
No 413
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.43 E-value=43 Score=22.58 Aligned_cols=48 Identities=8% Similarity=0.192 Sum_probs=31.3
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-c-CeeEEEEecCCC
Q 021788 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-S-SRPMRIDVATPK 289 (307)
Q Consensus 235 ~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i-~-g~~i~v~~a~~k 289 (307)
.|.+++|.+-...|+-+++|-|+|++. + .+++..+ . ...|.|..-..|
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~------f-vI~~ikVieg~~GlFVaMPs~k 54 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPSKR 54 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCcC
Confidence 477888877666688999999999852 2 3455433 2 345777664443
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.69 E-value=99 Score=20.72 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=38.8
Q ss_pred EEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 212 FVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 212 ~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
++-.+....+..+|++.++.-|+ .|..+..+.-+. | ..-|+|++..-.+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 33356678999999999976677 366776665432 3 23599999888777765443
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.54 E-value=83 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCHHHHHHHH--hhhCCCeeEEEEEecCCCCCcccEEEEEeCCHH-HHHHHH
Q 021788 220 VTDSILQETF--SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN-ERSRAM 268 (307)
Q Consensus 220 ~t~~~l~~~F--~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~~~-~A~~A~ 268 (307)
....+|++.| + .|..+. ++.+.++. -++|+++|+|.+-- --..|+
T Consensus 33 ~s~~~l~~~~~~~-~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 33 ESGSKLRDEYILR-GFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCSHHHHHHHHHT-TCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 3457889866 7 788766 55555543 36789999997643 333443
No 416
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.57 E-value=1.1e+02 Score=20.59 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=29.5
Q ss_pred CHHHHHHHHhh----cC-CeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHHhC
Q 021788 128 DETFLHNCFSH----TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (307)
Q Consensus 128 t~~~l~~~f~~----~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (307)
.|..+...+.. .| .|.++.+.. ...||.||++...++...+++.+.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 34454444442 23 355554442 367999999999998888887543
No 417
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=32.76 E-value=84 Score=25.43 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=46.8
Q ss_pred CCCeEEEcCCCCCCC--HHHH----HHHHhhhCCCeeE---E---EEEecC---CC-CCcccEEEEEeCCHHHHHHHHHH
Q 021788 207 SDLSIFVGDLAPDVT--DSIL----QETFSSKYPSVKG---A---KVIIDS---NT-GRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 207 ~~~~l~v~nlp~~~t--~~~l----~~~F~~~~G~v~~---i---~i~~d~---~~-~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
..+.|.|-++|.... +..+ .+++.+.|..+.. + ++.+.+ .. .......+|.|....+=.+.|.+
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHH
Confidence 457899999999876 3333 4455556775421 1 111111 00 11234678888887765555544
Q ss_pred h---cCceecCeeEEEEec
Q 021788 271 M---NGVYCSSRPMRIDVA 286 (307)
Q Consensus 271 l---~g~~i~g~~i~v~~a 286 (307)
- ....+.|.+|++.-.
T Consensus 131 aR~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HHTTSCEEETTEEEEEEEC
T ss_pred HHHhcccccCCCceEEeCC
Confidence 4 467788999988653
No 418
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=30.72 E-value=59 Score=22.56 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=31.1
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-c-CeeEEEEecCCC
Q 021788 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-S-SRPMRIDVATPK 289 (307)
Q Consensus 235 ~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i-~-g~~i~v~~a~~k 289 (307)
.|.+|+|.+-...|+-+++|-|+|++. + .+++..| . ...|.|..-..|
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~------f-vI~dIkVieg~~GlFVaMPSrk 54 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE------F-VVHDIRVIDGNNGLFVAMPSKR 54 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCcC
Confidence 477888876655688999999999852 2 3455433 2 345777664443
No 419
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.61 E-value=59 Score=21.92 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=21.7
Q ss_pred CeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 141 ~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
.|.++++..-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888776678999999999975
No 420
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.43 E-value=61 Score=22.71 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=31.1
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--cCeeEEEEecCCC
Q 021788 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATPK 289 (307)
Q Consensus 235 ~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i--~g~~i~v~~a~~k 289 (307)
.|.+|+|.+-...|+-+++|-|+|++. + .+++..| +...|.|..-..|
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~------F-vI~dIKViEg~~GlFVaMPSrk 54 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPSKR 54 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCcC
Confidence 367777776656688999999999852 2 3455433 2345777664443
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.08 E-value=1.1e+02 Score=23.59 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=35.5
Q ss_pred EEEcCCCC---------CCCHHHHHHHH--hhcCCeeEEEEeecCCCCCcCceEEEEeCCHHH-HHHHHH
Q 021788 118 IWIGDLFH---------WMDETFLHNCF--SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA-AEKVLQ 175 (307)
Q Consensus 118 l~v~nLp~---------~~t~~~l~~~f--~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~-a~~a~~ 175 (307)
+.|-|++. ..+..+|++.| +.|.++. ++.+.+. ....|+++|+|.+--. -..|++
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 45557665 14457899977 8898865 5555554 2467899999987433 334443
No 422
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=35.19 E-value=12 Score=26.48 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=39.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcC-ceEEEEeCCHHHHHHHHHHhCCCC
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGSL 181 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~-g~afV~f~~~~~a~~a~~~l~g~~ 181 (307)
..+|-|..+ .++++|..+....+ +..+++.+...+|+.. -.-+=.|.+.++|..|++.|-...
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345555443 45677888887776 4556666644344332 123456999999999999876543
No 423
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.69 E-value=73 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.6
Q ss_pred CeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 141 ~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
.|.++++.+-...|+-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888776678999999999975
No 424
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.63 E-value=15 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHhhhCCC-eeEEEEEecC----CCCCcccEEEEEeCCHHHHHH
Q 021788 219 DVTDSILQETFSSKYPS-VKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (307)
Q Consensus 219 ~~t~~~l~~~F~~~~G~-v~~i~i~~d~----~~~~~~g~afV~F~~~~~A~~ 266 (307)
.++..||++.++..|+. -.++.++..- ..|.+.|||. .|+|.+.|.+
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~-IYds~d~aKk 90 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGL-IYDNLDAAKK 90 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCC-CSSCHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEE-EeCCHHHHHh
Confidence 67889999999867776 3443333322 2357778875 4788777654
No 425
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.98 E-value=59 Score=26.94 Aligned_cols=32 Identities=6% Similarity=0.245 Sum_probs=25.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe
Q 021788 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148 (307)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~ 148 (307)
..+.|+|||+.++..-|.+++.. ..+.++.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46899999999999999999987 655544443
No 426
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.88 E-value=78 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=21.5
Q ss_pred CeeEEEEeecCCCCCcCceEEEEeCC
Q 021788 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (307)
Q Consensus 141 ~i~~~~~~~~~~~g~~~g~afV~f~~ 166 (307)
.|.++++.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887776678999999999975
No 427
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.24 E-value=54 Score=20.78 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=8.5
Q ss_pred ccEEEEEeCCH
Q 021788 251 KGYGFVRFGDE 261 (307)
Q Consensus 251 ~g~afV~F~~~ 261 (307)
++.|+|.|+|-
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45799999873
No 428
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=23.10 E-value=1.9e+02 Score=19.99 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=24.4
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcccEEEEEeCC
Q 021788 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (307)
Q Consensus 223 ~~l~~~F~~~~G~v~~i~i~~d~~~~~~~g~afV~F~~ 260 (307)
-+|.+.+. ..| |.+..|..+.++ ..=|++++..+
T Consensus 27 PEv~~~L~-~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLK-SHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHH-HTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHH-HcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 46677775 777 777788877442 23489999988
No 429
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.71 E-value=1.4e+02 Score=18.26 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcCceEEEEeCCHHHHHHHHHH
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (307)
..++.|.++.-..=...|.+.+.. ..|.++.+.... +-+.|+|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 356889998877677889999998 888888775533 3577888766667777775
No 430
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.77 E-value=35 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe
Q 021788 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148 (307)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~ 148 (307)
...+.|+|||+.++..-|..++.....+..+.++
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 3468999999999999999999865555555444
No 431
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.67 E-value=1.3e+02 Score=22.78 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhhhCCCee---EEEEEecCCCCCcccEEEEE
Q 021788 220 VTDSILQETFSSKYPSVK---GAKVIIDSNTGRTKGYGFVR 257 (307)
Q Consensus 220 ~t~~~l~~~F~~~~G~v~---~i~i~~d~~~~~~~g~afV~ 257 (307)
.|+++|+++-. ..|.+. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~-~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAAN-KQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHH-TTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHH-hCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999985 888764 45556664478888777654
No 432
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.20 E-value=1.5e+02 Score=21.93 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=38.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
-++-.+....+..+|++.++.-|+ .|..|..+.-+. | ..-|||++..-.+|...-..
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHHh
Confidence 334456678999999988865666 366776665432 3 23599999877776665433
No 433
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=21.14 E-value=61 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=8.3
Q ss_pred ccEEEEEeCCH
Q 021788 251 KGYGFVRFGDE 261 (307)
Q Consensus 251 ~g~afV~F~~~ 261 (307)
++.|+|.|+|-
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 45799999873
No 434
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.04 E-value=1.7e+02 Score=21.87 Aligned_cols=56 Identities=13% Similarity=0.261 Sum_probs=37.6
Q ss_pred EEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021788 212 FVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (307)
Q Consensus 212 ~v~nlp~~~t~~~l~~~F~~~~G-~v~~i~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (307)
++-.+....+..+|++.++.-|+ .|..|..+.-+. |. .-|||++..-.+|...-..
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~--KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GN--KKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SC--EEEEEEECSSSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--EEEEEEcCCCCcHHHHHHh
Confidence 33456678999999988865666 366776665433 32 3599999877776665433
No 435
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.82 E-value=63 Score=20.47 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=8.4
Q ss_pred ccEEEEEeCC
Q 021788 251 KGYGFVRFGD 260 (307)
Q Consensus 251 ~g~afV~F~~ 260 (307)
+|.|+|.|+|
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5789999987
No 436
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.54 E-value=2.1e+02 Score=23.21 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCCCCcccCCCCCeEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEEe
Q 021788 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (307)
Q Consensus 165 ~~~~~a~~a~~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~G~v~~i~i~~ 243 (307)
.|.+.+..+.+.+.. ...+++..+..................|+|+|+.++...|.+++. ....+....++.
T Consensus 59 id~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~vv~NlPY~is~~il~~ll~-~~~~~~~~~lm~ 130 (255)
T 3tqs_A 59 IDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLFS-QIHCIEDMHFML 130 (255)
T ss_dssp CCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSCCSSCEEEEEECCHHHHHHHHHHHHH-TGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhccCCCeEEEecCCcccCHHHHHHHHh-CCCChheEEEEE
Confidence 356666666665543 113444443332221111000122348999999999999999995 555566555543
Done!