Query 021789
Match_columns 307
No_of_seqs 236 out of 1112
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 9.5E-28 3.3E-32 196.9 12.8 91 68-158 10-107 (108)
2 3vdy_A SSB, single-stranded DN 99.9 2.4E-27 8.3E-32 194.4 14.3 100 67-166 3-112 (116)
3 3ull_A DNA binding protein; DN 99.9 6.9E-27 2.4E-31 196.2 11.1 102 65-166 10-130 (132)
4 2vw9_A Single-stranded DNA bin 99.9 2E-26 7E-31 194.3 11.9 98 68-165 1-110 (134)
5 3ulp_A Single-strand binding p 99.9 4E-26 1.4E-30 189.5 13.2 98 67-164 4-121 (124)
6 1txy_A Primosomal replication 99.9 1.8E-26 6.2E-31 186.7 9.1 94 68-163 1-103 (104)
7 1z9f_A Single-strand binding p 99.9 7.4E-26 2.5E-30 195.4 13.4 99 68-166 15-125 (153)
8 1qvc_A Single stranded DNA bin 99.9 8E-26 2.7E-30 193.0 13.0 100 67-166 3-118 (145)
9 3tqy_A Single-stranded DNA-bin 99.9 1.5E-25 5.1E-30 194.2 13.5 101 65-165 4-117 (158)
10 1v1q_A Primosomal replication 99.9 9.1E-26 3.1E-30 191.6 9.9 97 68-165 18-122 (134)
11 3lgj_A Single-stranded DNA-bin 99.9 3.8E-25 1.3E-29 193.9 13.9 100 67-166 21-138 (169)
12 4gs3_A Single-stranded DNA-bin 99.9 5.4E-25 1.8E-29 180.6 10.2 91 69-161 11-106 (107)
13 3pgz_A Single-stranded DNA-bin 99.9 1.3E-24 4.4E-29 194.5 11.8 100 67-166 24-141 (193)
14 3afp_A Single-stranded DNA-bin 99.9 2.3E-24 7.9E-29 188.4 12.3 98 68-165 3-118 (168)
15 4dam_A Single-stranded DNA-bin 99.9 2.5E-24 8.6E-29 180.9 11.6 92 67-160 13-118 (128)
16 1eqq_A Single stranded DNA bin 99.9 3.8E-25 1.3E-29 195.2 5.5 99 67-165 4-118 (178)
17 3fhw_A Primosomal replication 99.9 6.6E-24 2.3E-28 176.0 11.3 93 69-165 1-101 (115)
18 3k7u_C MP18 RNA editing comple 99.9 8.1E-24 2.8E-28 182.2 12.1 97 67-165 4-119 (148)
19 3k81_C MP18 RNA editing comple 99.9 7.3E-24 2.5E-28 185.4 11.4 99 66-166 19-136 (164)
20 3k8a_A Putative primosomal rep 99.9 7.2E-24 2.5E-28 172.3 9.9 87 70-161 8-102 (103)
21 3eiv_A Single-stranded DNA-bin 99.9 6E-23 2.1E-27 184.5 14.9 91 69-159 4-108 (199)
22 2fxq_A Single-strand binding p 99.9 3.3E-23 1.1E-27 191.2 12.9 99 67-166 126-233 (264)
23 1se8_A Single-strand binding p 99.9 8.4E-23 2.9E-27 193.0 13.5 99 66-164 2-113 (301)
24 2fxq_A Single-strand binding p 99.9 4.2E-23 1.5E-27 190.5 11.1 98 67-164 3-111 (264)
25 1se8_A Single-strand binding p 99.9 4.2E-22 1.5E-26 188.2 12.2 99 67-166 127-237 (301)
26 3en2_A Probable primosomal rep 99.8 1.3E-21 4.5E-26 158.9 7.6 76 69-145 2-85 (101)
27 4dni_A Fusion protein of RNA-e 99.8 1.6E-20 5.5E-25 174.4 11.2 90 69-161 146-255 (257)
28 4dni_A Fusion protein of RNA-e 99.8 4.4E-19 1.5E-23 164.8 10.1 91 67-161 28-128 (257)
29 3stb_C RNA-editing complex pro 99.7 1.7E-17 5.9E-22 142.8 10.8 81 67-149 42-130 (148)
30 4dka_C RNA-editing complex pro 97.5 0.0007 2.4E-08 55.1 10.1 74 70-145 4-82 (105)
31 2k50_A Replication factor A re 96.6 0.011 3.7E-07 47.0 8.8 71 70-145 17-91 (115)
32 3e0e_A Replication protein A; 96.2 0.01 3.5E-07 46.6 6.7 79 70-161 12-94 (97)
33 3dm3_A Replication factor A; p 96.2 0.016 5.4E-07 46.5 7.5 81 70-162 15-99 (105)
34 1o7i_A SSB, SSO2364, single st 95.2 0.057 1.9E-06 43.5 7.4 63 69-139 12-78 (119)
35 2k75_A Uncharacterized protein 94.4 0.13 4.5E-06 40.9 7.5 60 69-139 13-75 (106)
36 1ynx_A Replication factor-A pr 94.2 0.067 2.3E-06 42.9 5.5 63 69-135 14-79 (114)
37 2hql_A Hypothetical protein Mg 92.3 2.4 8.2E-05 33.8 11.3 85 67-157 6-96 (110)
38 3f2b_A DNA-directed DNA polyme 91.9 1.4 4.9E-05 47.8 12.9 86 68-162 16-103 (1041)
39 3kdf_D Replication protein A 3 89.9 1.9 6.5E-05 35.0 9.1 88 61-164 23-113 (132)
40 4gop_B Putative uncharacterize 89.0 2 7E-05 35.0 8.7 89 60-164 27-118 (136)
41 1eov_A ASPRS, aspartyl-tRNA sy 87.9 3.9 0.00013 40.6 11.5 86 70-164 37-131 (487)
42 1jmc_A Protein (replication pr 85.8 1.3 4.4E-05 39.0 6.1 63 69-135 18-83 (246)
43 2hpi_A DNA polymerase III alph 84.4 1.4 4.8E-05 48.6 6.7 79 71-161 1044-1122(1220)
44 1wjj_A Hypothetical protein F2 83.7 4.4 0.00015 34.2 8.2 61 69-137 26-99 (145)
45 4gop_C Putative uncharacterize 83.6 1.9 6.4E-05 41.8 6.6 64 69-136 13-79 (444)
46 3kf6_A Protein STN1; OB fold, 82.6 7.9 0.00027 33.0 9.4 88 64-166 42-132 (159)
47 3m4p_A Ehasnrs, asparaginyl-tR 80.4 6.3 0.00021 38.8 9.1 87 69-164 30-123 (456)
48 3nem_A Aspartyl-tRNA synthetas 80.1 15 0.00053 35.8 11.7 82 70-164 17-102 (438)
49 2xgt_A Asparaginyl-tRNA synthe 79.3 6.2 0.00021 38.5 8.6 83 70-162 12-96 (435)
50 2pi2_A Replication protein A 3 79.1 8.1 0.00028 35.1 8.8 56 104-165 96-154 (270)
51 1x54_A Asparaginyl-tRNA synthe 78.8 10 0.00036 36.9 10.1 81 70-163 17-101 (434)
52 1wyd_A Hypothetical aspartyl-t 78.4 9.1 0.00031 37.3 9.4 80 70-163 17-98 (429)
53 3au7_A TIAS, putative uncharac 77.7 13 0.00045 36.3 10.3 78 67-162 282-361 (402)
54 3kf8_A Protein STN1; OB fold; 77.5 11 0.00036 34.2 8.9 102 62-163 78-185 (220)
55 3bju_A Lysyl-tRNA synthetase; 75.9 10 0.00034 38.0 9.2 79 71-163 57-141 (521)
56 1n9w_A Aspartyl-tRNA synthetas 74.2 11 0.00037 36.7 8.7 75 69-163 13-88 (422)
57 3i7f_A Aspartyl-tRNA synthetas 73.3 15 0.00051 37.2 9.7 85 70-164 63-154 (548)
58 3a74_A Lysyl-tRNA synthetase; 71.9 17 0.00059 36.0 9.7 78 71-163 58-139 (493)
59 2kbn_A Conserved protein; nucl 69.5 16 0.00055 28.7 7.2 62 69-140 15-77 (109)
60 1c0a_A Aspartyl tRNA synthetas 68.3 17 0.00057 36.9 8.8 84 71-164 17-106 (585)
61 1e1o_A Lysyl-tRNA synthetase, 67.5 24 0.00082 35.1 9.6 78 71-163 66-148 (504)
62 1l0w_A Aspartyl-tRNA synthetas 67.5 15 0.00053 37.2 8.4 84 71-164 18-104 (580)
63 1jmc_A Protein (replication pr 66.7 12 0.0004 32.8 6.5 67 71-142 140-210 (246)
64 4ex5_A Lysine--tRNA ligase; st 63.5 38 0.0013 34.0 10.3 79 71-164 88-170 (529)
65 2vl6_A SSO MCM N-TER, minichro 61.4 19 0.00063 32.4 6.9 53 105-161 209-266 (268)
66 4hik_A Protection of telomeres 58.1 7.4 0.00025 32.8 3.4 27 108-134 66-92 (143)
67 4gop_C Putative uncharacterize 51.1 16 0.00055 35.2 5.0 69 71-144 135-211 (444)
68 4ah6_A Aspartate--tRNA ligase, 44.0 83 0.0028 32.3 9.1 82 70-164 25-114 (617)
69 4hsp_A Hypothetical protein; P 40.5 24 0.00082 30.1 3.8 85 67-160 51-145 (150)
70 1ltl_A DNA replication initiat 39.3 36 0.0012 30.8 5.1 51 106-161 197-248 (279)
71 1gm5_A RECG; helicase, replica 31.9 28 0.00097 36.3 3.5 62 70-139 166-229 (780)
72 1xjv_A Protection of telomeres 30.1 85 0.0029 28.5 6.0 73 69-145 15-87 (294)
73 4eh1_A Flavohemoprotein; struc 29.0 1.1E+02 0.0037 25.8 6.2 28 115-142 83-110 (243)
74 3ebe_A Protein MCM10 homolog; 26.4 65 0.0022 28.4 4.3 64 71-136 57-120 (200)
75 4fa8_A Secreted protein BARF1; 26.3 52 0.0018 27.4 3.6 102 21-138 100-202 (203)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.95 E-value=9.5e-28 Score=196.93 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=80.3
Q ss_pred ccceEEEEEEeCCCCeEEECCCC-cEEEEEEEEEcC---CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCC
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA 143 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sG-k~va~fsLAv~~---~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~sye 143 (307)
-||+|+|||||++|||+|+|++| .++|+|+||+++ .++|+||+|++||++||.|++||+|||+|+|+|+|++++|+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 48999999999999999999998 999999999985 34799999999999999999999999999999999999999
Q ss_pred cC---CeEEEEEEEeEEE
Q 021789 144 IE---GQANVQVMVHSLN 158 (307)
Q Consensus 144 dk---~rs~~eViVe~I~ 158 (307)
++ .++.+||+|++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 85 5688999999875
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.95 E-value=2.4e-27 Score=194.37 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=87.8
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~-------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s 139 (307)
.|||+|+|+|||++|||++++++|.++|.|+||+++. .+++||+|++||++||.+++||+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5899999999999999999999999999999999761 268999999999999999999999999999999999
Q ss_pred cCCCcC---CeEEEEEEEeEEEeeccCCcc
Q 021789 140 DPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 140 ~syedk---~rs~~eViVe~I~FL~~k~~~ 166 (307)
++|+++ .++.++|+|++|.||++++..
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999966 567889999999999887543
No 3
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.94 E-value=6.9e-27 Score=196.21 Aligned_cols=102 Identities=12% Similarity=0.194 Sum_probs=87.9
Q ss_pred CccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--C-------------CCCeeEEEEEec-cHHHHHHhhcCCC
Q 021789 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--A-------------SHSLWIPILFEG-DLAHIASSHLKKD 128 (307)
Q Consensus 65 ~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~--~-------------~~T~wI~Vv~wG-klAE~~a~yLkKG 128 (307)
++++||+|+|||||++|||++++++|.++|.|+||+++ . ..++||+|++|| ++||.+++||+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 45789999999999999999999999999999999975 1 147999999999 5999999999999
Q ss_pred CeEEEEEEeeecCCCcC---CeEEEEEEEeEEEeeccCCcc
Q 021789 129 DHVHIAGQLTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 129 D~V~VsGrL~s~syedk---~rs~~eViVe~I~FL~~k~~~ 166 (307)
++|+|+|+|++++|+++ .++.++|+|++|.||++++.+
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k~ 130 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999999999999866 457789999999999987654
No 4
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.94 E-value=2e-26 Score=194.31 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=88.8
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C--C---CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A--S---HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~--~---~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~ 138 (307)
|||+|+|+|||++|||+|+|++|.++|.|+||+++ . . +++||+|++||++||.+++||+|||+|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 68999999999999999999999999999999985 1 1 5799999999999999999999999999999999
Q ss_pred ecCCCcC---CeEEEEEEEeEEEeeccCCc
Q 021789 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (307)
Q Consensus 139 s~syedk---~rs~~eViVe~I~FL~~k~~ 165 (307)
+++|+++ .++.++|+|++|.||+++..
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 110 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSD 110 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC--
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCcc
Confidence 9999876 45778999999999987654
No 5
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.94 E-value=4e-26 Score=189.52 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=87.9
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C------CCCeeEEEEEec-cHHHHHHhhcCCCCeEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~------~~T~wI~Vv~wG-klAE~~a~yLkKGD~V~VsG 135 (307)
+|||+|+|+|||++|||++++++|+++|.|+||+++ . ++|+||+|++|| ++||.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 689999999999999999999999999999999975 1 158999999999 99999999999999999999
Q ss_pred EeeecCCCc---C--CeEEEEEEEe----EEEeeccCC
Q 021789 136 QLTADPPAI---E--GQANVQVMVH----SLNLIEPTS 164 (307)
Q Consensus 136 rL~s~syed---k--~rs~~eViVe----~I~FL~~k~ 164 (307)
+|++++|++ + .++.++|+|+ +|.||++++
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~ 121 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKR 121 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC---
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcC
Confidence 999999985 4 5688899998 999998765
No 6
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.93 E-value=1.8e-26 Score=186.65 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=79.3
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-CCCCee-------EEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLW-------IPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-~~~T~w-------I~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s 139 (307)
|||+|+|+|||++|||+|||++|.++|.|+||++. ..+++| |+|++||++||.+++||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 78999999999999999999999999999999974 335677 9999999999999999999999999999999
Q ss_pred cCCCcC-CeEEEEEEEeEEEeeccC
Q 021789 140 DPPAIE-GQANVQVMVHSLNLIEPT 163 (307)
Q Consensus 140 ~syedk-~rs~~eViVe~I~FL~~k 163 (307)
+ +++ |+.+++|+|++|+||+++
T Consensus 81 ~--~~~~G~~r~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSKMVLHAEQIELIDSG 103 (104)
T ss_dssp ----------CCEEEEEEEEEC---
T ss_pred c--cCCCCCEEEEEEEEEEEECcCC
Confidence 8 444 555599999999999754
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=7.4e-26 Score=195.41 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=82.5
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-C-------C-CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-A-------S-HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-~-------~-~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~ 138 (307)
++|+|+|+||||+|||+|+|++|+.+|.|+||+++ . . +|+||+|++||++||.+++||+||++|+|+|+|+
T Consensus 15 ~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 94 (153)
T 1z9f_A 15 FFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMR 94 (153)
T ss_dssp CCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEE
Confidence 69999999999999999999999999999999986 2 1 2899999999999999999999999999999999
Q ss_pred ecCCCcC---CeEEEEEEEeEEEeeccCCcc
Q 021789 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 139 s~syedk---~rs~~eViVe~I~FL~~k~~~ 166 (307)
+++|+++ .++.++|+|++|.||+++...
T Consensus 95 ~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 95 MRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEC-------CCCEEEEEEEEEEECC-----
T ss_pred eceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 9999866 567899999999999876544
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.93 E-value=8e-26 Score=192.97 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=91.1
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGr 136 (307)
+|||+|+|||||++|||+|+|++|.++|.|+||+++ . ++++||+|++||++||.+++||+|||+|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 689999999999999999999999999999999986 1 258999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEE---EEeEEEeeccCCcc
Q 021789 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQK 166 (307)
Q Consensus 137 L~s~syedk---~rs~~eV---iVe~I~FL~~k~~~ 166 (307)
|++++|+++ .++.++| +|++|.||+++...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 999999976 4567799 99999999876543
No 9
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.93 E-value=1.5e-25 Score=194.16 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=89.1
Q ss_pred CccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC---CC-------CCeeEEEEEeccHHHHHHhhcCCCCeEEEE
Q 021789 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---AS-------HSLWIPILFEGDLAHIASSHLKKDDHVHIA 134 (307)
Q Consensus 65 ~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~---~~-------~T~wI~Vv~wGklAE~~a~yLkKGD~V~Vs 134 (307)
+.+.||+|+|||||++|||+|+|++|+.+|.|+||+++ .. .|+||+|++||++||.+++||+||++|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 44679999999999999999999999999999999975 11 489999999999999999999999999999
Q ss_pred EEeeecCCCcC---CeEEEEEEEeEEEeeccCCc
Q 021789 135 GQLTADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (307)
Q Consensus 135 GrL~s~syedk---~rs~~eViVe~I~FL~~k~~ 165 (307)
|+|++++|+++ .++.++|+|++|.||+++..
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~ 117 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGG 117 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC----
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCcc
Confidence 99999999866 46788999999999987764
No 10
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.92 E-value=9.1e-26 Score=191.63 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=85.2
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C----CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~----~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s 139 (307)
|+|+|+|||||++|||+|||++|.+||.|+||+++ . ..++||+|++||++||.|++||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 45999999999999999999999999999999964 1 135799999999999999999999999999999999
Q ss_pred cCCCcCCeEEEEEEEeEEEeeccCCc
Q 021789 140 DPPAIEGQANVQVMVHSLNLIEPTSQ 165 (307)
Q Consensus 140 ~syedk~rs~~eViVe~I~FL~~k~~ 165 (307)
++. .+++.+|.++|++|.||++++.
T Consensus 98 r~~-k~G~kr~~~~a~~i~~l~~k~~ 122 (134)
T 1v1q_A 98 HKA-KNGLSKMVLHAEQIELIDSVDK 122 (134)
T ss_dssp ECT-TTTSCEEEEEEEEEEETTSCSC
T ss_pred EEC-CCCCEEEEEEEEEEEECcCCCC
Confidence 852 2366677789999999987654
No 11
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.92 E-value=3.8e-25 Score=193.85 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=85.0
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEecc-HHHHHHhhcCCCCeEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~----------~~T~wI~Vv~wGk-lAE~~a~yLkKGD~V~VsG 135 (307)
.|||+|+|||||++|||+|++++|+.+|.|+||+++. ++|+||+|++||+ +||.+++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 5799999999999999999999999999999999761 2589999999999 9999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEE----eEEEeeccCCcc
Q 021789 136 QLTADPPAIE---GQANVQVMV----HSLNLIEPTSQK 166 (307)
Q Consensus 136 rL~s~syedk---~rs~~eViV----e~I~FL~~k~~~ 166 (307)
+|++++|+++ .++.++|+| ++|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999976 567889988 689999987654
No 12
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=5.4e-25 Score=180.58 Aligned_cols=91 Identities=20% Similarity=0.347 Sum_probs=80.4
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee-cCCCcC-
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA-DPPAIE- 145 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s-~syedk- 145 (307)
.|+|+|||||++|||+++|++|..++.|+|||+| ...+|||+|++|+++||.+..| ||++|+|+|+|++ +.|+++
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC----
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCC
Confidence 3999999999999999999999999999999998 4568999999999999998765 9999999999997 788765
Q ss_pred --CeEEEEEEEeEEEeec
Q 021789 146 --GQANVQVMVHSLNLIE 161 (307)
Q Consensus 146 --~rs~~eViVe~I~FL~ 161 (307)
.++.++|+|++|+||+
T Consensus 89 G~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 89 GKNKLILTVFARDISVVP 106 (107)
T ss_dssp ----EEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEEcc
Confidence 6788899999999996
No 13
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.91 E-value=1.3e-24 Score=194.50 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=87.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C------CCCeeEEEEEecc-HHHHHHhhcCCCCeEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~------~~T~wI~Vv~wGk-lAE~~a~yLkKGD~V~VsG 135 (307)
+.||+|+|||||++|||+|+|++|++||+|+||+++ . ++|+||+|++||+ +||.+++||+||++|+|+|
T Consensus 24 ~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeG 103 (193)
T 3pgz_A 24 GSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEG 103 (193)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEE
Confidence 458999999999999999999999999999999975 1 1489999999996 9999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEe----EEEeeccCCcc
Q 021789 136 QLTADPPAIE---GQANVQVMVH----SLNLIEPTSQK 166 (307)
Q Consensus 136 rL~s~syedk---~rs~~eViVe----~I~FL~~k~~~ 166 (307)
+|++++|+++ .++.++|+|+ +|.||+++...
T Consensus 104 rL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 104 QLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 9999999876 5678899999 68999987653
No 14
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.91 E-value=2.3e-24 Score=188.38 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=86.7
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-------C----CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-------~----~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGr 136 (307)
.+|+|+|||||++|||+|++++|+.||+|+||+++ . .+|+||+|++||++||.+++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 48999999999999999999999999999999964 1 158999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEEEEe----EEEeeccCCc
Q 021789 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTSQ 165 (307)
Q Consensus 137 L~s~syedk---~rs~~eViVe----~I~FL~~k~~ 165 (307)
|++++|+++ .++.++|+|+ +|.|++.+..
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~~ 118 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVN 118 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEeccccc
Confidence 999999966 5678899777 6788875543
No 15
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.91 E-value=2.5e-24 Score=180.90 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=83.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-----C------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-----~------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsG 135 (307)
.-+|+|+|||||++|||++++++| ++|.|+||+++ . .+|+||+|++||++||.+++||+|||+|+|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEE
Confidence 348999999999999999999999 99999999975 1 16899999999999999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEeEEEee
Q 021789 136 QLTADPPAIE---GQANVQVMVHSLNLI 160 (307)
Q Consensus 136 rL~s~syedk---~rs~~eViVe~I~FL 160 (307)
+|++++| ++ .++.++|+|++|..-
T Consensus 92 rL~~~~~-dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 92 RLKVRTD-VREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEEE-EETTEEEEEEEEEEEEEEEC
T ss_pred EEEEeEE-cCCCCEEEEEEEEEEEEEec
Confidence 9999999 55 567789999998753
No 16
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.91 E-value=3.8e-25 Score=195.17 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=88.1
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~----------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGr 136 (307)
++||+|+|||||++|||+|+|++|+.+|.|+||+++. ++|+||+|++||++||.+++||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 4799999999999999999999999999999999751 137999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEE---EEeEEEeeccCCc
Q 021789 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQ 165 (307)
Q Consensus 137 L~s~syedk---~rs~~eV---iVe~I~FL~~k~~ 165 (307)
|++++|+++ .++.++| +|++|.||+.+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 999999876 4567899 8999999987654
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.90 E-value=6.6e-24 Score=175.96 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=82.1
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C---CC-CeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A---SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~---~~-T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~ 140 (307)
||+|+|+|||++|||+|||++|.+||.|+||+++ . .+ .+||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 7999999999999999999999999999999975 1 12 3559999999999998 999999999999999999
Q ss_pred CCCcCCeEEEEEEEeEEEeeccCCc
Q 021789 141 PPAIEGQANVQVMVHSLNLIEPTSQ 165 (307)
Q Consensus 141 syedk~rs~~eViVe~I~FL~~k~~ 165 (307)
+- ++ +.++|.|++|+||++...
T Consensus 80 s~--~G-~kl~l~a~~Ie~l~~~~~ 101 (115)
T 3fhw_A 80 RK--DS-VKVKLHLQQARRIAGSMG 101 (115)
T ss_dssp ST--TC-SSEEEEEEEEEECCCSCC
T ss_pred CC--CC-CEEEEEEEEEEEcCCCCC
Confidence 63 24 678999999999986643
No 18
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.90 E-value=8.1e-24 Score=182.17 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=83.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccH-HHHHHhhcCCCCeEEEEE
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDL-AHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~----------~~T~wI~Vv~wGkl-AE~~a~yLkKGD~V~VsG 135 (307)
..||+|+|||||++||| +++ +|+.+|.|+||+++. .+|+||+|++||++ ||+|++||+||++|+|+|
T Consensus 4 ~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 4 KSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp -CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999 999 999999999999851 36899999999997 999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEe-----EEEeeccCCc
Q 021789 136 QLTADPPAIE---GQANVQVMVH-----SLNLIEPTSQ 165 (307)
Q Consensus 136 rL~s~syedk---~rs~~eViVe-----~I~FL~~k~~ 165 (307)
+|++++|+++ .++.++|++- .+.+|+++..
T Consensus 82 rL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 82 RLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp EEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred EEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 9999999876 4566788764 6899986654
No 19
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.90 E-value=7.3e-24 Score=185.37 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred ccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-------C---CCCeeEEEEEeccH-HHHHHhhcCCCCeEEEE
Q 021789 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A---SHSLWIPILFEGDL-AHIASSHLKKDDHVHIA 134 (307)
Q Consensus 66 p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-------~---~~T~wI~Vv~wGkl-AE~~a~yLkKGD~V~Vs 134 (307)
...||+|+||||||+|||+|+++ ..||.|+||+++ . .+|+||+|++||++ ||+|++||+||++|+|+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEE
Confidence 56699999999999999999999 899999999983 1 36899999999999 99999999999999999
Q ss_pred EEeeecCCCcC---CeEEE-EEEEe----EEEeeccCCcc
Q 021789 135 GQLTADPPAIE---GQANV-QVMVH----SLNLIEPTSQK 166 (307)
Q Consensus 135 GrL~s~syedk---~rs~~-eViVe----~I~FL~~k~~~ 166 (307)
|+|++++|+|+ +++.+ .|+|. .+.+|+++...
T Consensus 97 GrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~~ 136 (164)
T 3k81_C 97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 136 (164)
T ss_dssp CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC----
T ss_pred EEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCCC
Confidence 99999999887 23333 55665 79999876543
No 20
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.90 E-value=7.2e-24 Score=172.30 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=77.2
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C---CCC-eeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecC
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A---SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADP 141 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~---~~T-~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~s 141 (307)
|+|+|||||++|||+|||++|.+||.|+||+++ . .++ +||+|++||++|| +. +|+||++|+|+|+|++++
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~-~l~KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EW-QYRQGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HS-TTCTTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hh-ccCCCCEEEEEEEEEECc
Confidence 999999999999999999999999999999975 1 133 5599999999999 65 499999999999999999
Q ss_pred CCcCCeEEEEEEEeEEEeec
Q 021789 142 PAIEGQANVQVMVHSLNLIE 161 (307)
Q Consensus 142 yedk~rs~~eViVe~I~FL~ 161 (307)
| +++ ...+.+++|++++
T Consensus 86 ~--~~~-~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 86 R--RSL-MPMLRIQNIKEYK 102 (103)
T ss_dssp S--SCC-CEEEEEEEEEECC
T ss_pred c--CCc-cEEEEEEEEEEcC
Confidence 9 333 7889999999984
No 21
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.89 E-value=6e-23 Score=184.46 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=80.7
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-----C------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-----~------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL 137 (307)
+|+|+|||||++|||+|+|++|+.||+|+||+++ . .+|+||+|++|+++||.|++||+||++|+|+|+|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL 83 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRL 83 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 7999999999999999999999999999999963 1 2689999999999999999999999999999999
Q ss_pred eecCCCcC---CeEEEEEEEeEEEe
Q 021789 138 TADPPAIE---GQANVQVMVHSLNL 159 (307)
Q Consensus 138 ~s~syedk---~rs~~eViVe~I~F 159 (307)
++++|+++ .++.++|+|++|..
T Consensus 84 ~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 84 KQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEC--------CCEEEEEEEEEEE
T ss_pred EeeEEECCCCCEEEEEEEEEEEEec
Confidence 99999976 67899999999976
No 22
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.89 E-value=3.3e-23 Score=191.22 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=87.5
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~ 140 (307)
++||+|+|+|||++|||+|++++|+.+|.|+||+++. +.++||+|++||++||.++ ||+||++|+|+|+|+++
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 4789999999999999999999999999999999872 2589999999999999999 99999999999999999
Q ss_pred CCCcC---CeEEEEEEEeEEEeeccCCcc
Q 021789 141 PPAIE---GQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 141 syedk---~rs~~eViVe~I~FL~~k~~~ 166 (307)
+|+++ .++.++|+|++|.||+++...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99876 457789999999999876543
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.89 E-value=8.4e-23 Score=192.96 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=88.6
Q ss_pred ccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhh-cCCCCeEEEEE
Q 021789 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSH-LKKDDHVHIAG 135 (307)
Q Consensus 66 p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~---------~~T~wI~Vv~wGklAE~~a~y-LkKGD~V~VsG 135 (307)
.++||+|+|+|||++|||+|++++|..+|.|+||+++. +.++||+|++||++||.+++| |+||++|+|+|
T Consensus 2 a~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 2 ARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp -CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred CCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 35799999999999999999999999999999999751 146999999999999999999 99999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEeEEEeeccCC
Q 021789 136 QLTADPPAIE---GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 136 rL~s~syedk---~rs~~eViVe~I~FL~~k~ 164 (307)
+|++++|+++ .++.++|+|++|.||+.++
T Consensus 82 ~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~ 113 (301)
T 1se8_A 82 TLEYRQWEAPEGGKRSAVNVKALRMEQLGTQP 113 (301)
T ss_dssp EEEEEEEC-----CEEEEEEEEEEEEECSSCC
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEeeccc
Confidence 9999999876 5677899999999998765
No 24
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.89 E-value=4.2e-23 Score=190.52 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=84.0
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~---------~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL 137 (307)
++||+|+|+|||++|||+|++++|.++|.|+||+++. ..++||+|++||++||.+++||+||++|+|+|+|
T Consensus 3 ~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 3 RGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEE
Confidence 4699999999999999999999999999999999761 1379999999999999999999999999999999
Q ss_pred eecCCCcC--CeEEEEEEEeEEEeeccCC
Q 021789 138 TADPPAIE--GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 138 ~s~syedk--~rs~~eViVe~I~FL~~k~ 164 (307)
++++|+++ .++.++|+|++|.||+++.
T Consensus 83 ~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC---------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 99999865 5677899999999998766
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.87 E-value=4.2e-22 Score=188.16 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=86.4
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C-----CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A-----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~-----~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL 137 (307)
+|||+|+|+|||++|||+|++++|+.+|.|+||+++ . .+++||+|++||++||.+++ |+||++|+|+|+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 579999999999999999999999999999999975 1 24799999999999999999 9999999999999
Q ss_pred eecCCCcC---CeEEEEEEEeEEEeeccCCcc
Q 021789 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 138 ~s~syedk---~rs~~eViVe~I~FL~~k~~~ 166 (307)
++++|+++ .++.++|+|++|.||+.+...
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC----
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999876 567889999999999876543
No 26
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.85 E-value=1.3e-21 Score=158.89 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=66.0
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C---CCC-eeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A---SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~----~---~~T-~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~ 140 (307)
||+|+|+|||++|||+|||++|.++|.|+||+++ . .++ +||+|++||++||.+++ +.||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 8999999999999999999999999999999975 1 134 45999999999999997 5899999999999999
Q ss_pred CCCcC
Q 021789 141 PPAIE 145 (307)
Q Consensus 141 syedk 145 (307)
+|..+
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99654
No 27
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.83 E-value=1.6e-20 Score=174.42 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=78.2
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-------CC---CCeeEEEEEeccH--HHHHHhhcCCCCeEEEEEE
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------AS---HSLWIPILFEGDL--AHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-------~~---~T~wI~Vv~wGkl--AE~~a~yLkKGD~V~VsGr 136 (307)
+|+|+||||| +|||+|+|+ |+++|+|+||+++ .+ +|+||+|++||++ || +++||+||++|+|+|+
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 8999999999 999999999 9999999999975 11 5899999999999 99 8899999999999999
Q ss_pred eeecCCCcC---CeEEEE-EEEe----EEEeec
Q 021789 137 LTADPPAIE---GQANVQ-VMVH----SLNLIE 161 (307)
Q Consensus 137 L~s~syedk---~rs~~e-ViVe----~I~FL~ 161 (307)
|++++|+|+ +++.++ |.|+ .+.+|+
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 999999887 445555 4555 555554
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.78 E-value=4.4e-19 Score=164.75 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=78.6
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-----CC-CCeeEEEEEec-cHHHHHHhhcCCCCeEEEEEEeee
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----AS-HSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~-----~~-~T~wI~Vv~wG-klAE~~a~yLkKGD~V~VsGrL~s 139 (307)
+++|+|+|||||++| |+|||++|. ++.|+|||+. .+ +++||.|++|| ++||.|.+||+||++|+|+|||++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 789999999999999 999999984 6667777754 12 45899999999 999999999999999999999999
Q ss_pred cCCCcC---CeEEEEEEEeEEEeec
Q 021789 140 DPPAIE---GQANVQVMVHSLNLIE 161 (307)
Q Consensus 140 ~syedk---~rs~~eViVe~I~FL~ 161 (307)
|+++ +++.++|+|+++.-+.
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 5543 7899999999987754
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.72 E-value=1.7e-17 Score=142.84 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=72.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-cHHHHHHhhcCCCCeEEEEEEeee
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~------~~T~wI~Vv~wG-klAE~~a~yLkKGD~V~VsGrL~s 139 (307)
+.+|+|+|+|||+ ||+.+++. +..|+.|+|||++. .+++||+|.+|| ++||.+.+||+||++|.|+|||++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 6799999999996 99999995 88999999999762 257999999996 999999999999999999999999
Q ss_pred cCCCcC-CeEE
Q 021789 140 DPPAIE-GQAN 149 (307)
Q Consensus 140 ~syedk-~rs~ 149 (307)
++|+++ ++..
T Consensus 120 n~~~d~~gkk~ 130 (148)
T 3stb_C 120 VPQYDGSMRKY 130 (148)
T ss_dssp EEEEETTTTEE
T ss_pred ceeECCCCCEE
Confidence 999877 4444
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.52 E-value=0.0007 Score=55.05 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC--CCCeeEEEEEeccHH--HHHHhhcCCCCeEEEEEEeeecC-CCc
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--SHSLWIPILFEGDLA--HIASSHLKKDDHVHIAGQLTADP-PAI 144 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~--~~T~wI~Vv~wGklA--E~~a~yLkKGD~V~VsGrL~s~s-yed 144 (307)
.++.|+|+|- |++--+.. ...|..|+|+++-. -+-++|.|-++|+.+ +.+-+.|+-|..|.|.|||++.. |+.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl~-~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFLG-AMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEET-TEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-Eeeecccc-cceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 4688999986 67765553 34577899999753 356999999999988 88899999999999999999964 554
Q ss_pred C
Q 021789 145 E 145 (307)
Q Consensus 145 k 145 (307)
-
T Consensus 82 ~ 82 (105)
T 4dka_C 82 V 82 (105)
T ss_dssp T
T ss_pred c
Confidence 4
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.57 E-value=0.011 Score=47.05 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=54.4
Q ss_pred ceEEEEEEeCCCCeEE--ECCCC--cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 70 NSVNLIGHVDAPVQFQ--TSSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 70 N~V~LIGrLg~DPElr--~T~sG--k~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
..|.++|.|..--+++ .+.+| ..++.+.|+ ++|--|++++|+..|+.. ..|+.|+.|+|.|......|.+.
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~----D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f~g~ 91 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIA----DDTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGFGGR 91 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE----ETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCSSSS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE----eCCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEccccCCe
Confidence 4679999998764666 45677 677777776 456689999999998754 67999999999998855556543
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.24 E-value=0.01 Score=46.57 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=55.7
Q ss_pred ceEEEEEEeCCCCeEEE--CCCCc--EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 70 NSVNLIGHVDAPVQFQT--SSDGK--HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~--T~sGk--~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
..|.++|+|..--+++. ..+|. .+..+.|+ ++|--|++++|++.|+. .++.||.|.|.|+.+.. +
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~----DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~-~--- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK----DDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG-Y--- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE----ETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc-C---
Confidence 68999999987766655 34663 46566665 46789999999999986 69999999999987544 1
Q ss_pred CeEEEEEEEeEEEeec
Q 021789 146 GQANVQVMVHSLNLIE 161 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~ 161 (307)
..+++.+.+-.-|+
T Consensus 81 --~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 81 --SGLEISVDNIGIIE 94 (97)
T ss_dssp ---CEEEEEEEEEEEE
T ss_pred --CeEEEEECCCcEEE
Confidence 14566666655443
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.016 Score=46.46 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=58.7
Q ss_pred ceEEEEEEeCCCCeEEEC--CCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 70 NSVNLIGHVDAPVQFQTS--SDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T--~sGk~--va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
+.|.++|+|..--+++.. .+|.. +..+.|+ ++|--|++++|++.|+. .+..||.|.|.|+.+....
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----D~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~~--- 84 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----DETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGYY--- 84 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----ETTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECTT---
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CCCCcEEEEEECccccc---ccCCCCEEEEEEEEEEccC---
Confidence 689999999987777543 46754 4455554 35667999999999987 7999999999999887632
Q ss_pred CeEEEEEEEeEEEeecc
Q 021789 146 GQANVQVMVHSLNLIEP 162 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~~ 162 (307)
-.+++.+.+..-|..
T Consensus 85 --g~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 85 --GGLECTANYVEILKK 99 (105)
T ss_dssp --SSEEEEEEEEEEEEC
T ss_pred --CCEEEEeCCceEEEe
Confidence 124666665555543
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.21 E-value=0.057 Score=43.53 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=47.6
Q ss_pred cceEEEEEEeCCCCeEE--ECCCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeee
Q 021789 69 ANSVNLIGHVDAPVQFQ--TSSDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr--~T~sGk-~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~Vs-GrL~s 139 (307)
.+.|.++|.|..--+++ .+.+|+ .+..+.|+ ++|--|++++|+..|+ .++.|+.|+|. |++..
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~----D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG----DETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE----ETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE----eCCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 45688888887654444 557886 66666666 4565699999999884 48999999999 88765
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.40 E-value=0.13 Score=40.92 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=48.5
Q ss_pred cceEEEEEEeCCCCeEEECCCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeee
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~--va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~Vs-GrL~s 139 (307)
++.|.++|.|-.--+.+.+.+|.. ++...|+ ++|--|++++|++. |+.||.|.|. |+...
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~----DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE----DDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE----CSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEE----cCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 567999999987666666678874 6676666 56778999999987 9999999999 77765
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.067 Score=42.93 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=49.5
Q ss_pred cceEEEEEEeCCCCeEEECC--CC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 021789 69 ANSVNLIGHVDAPVQFQTSS--DG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~--sG-k~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsG 135 (307)
++.+.+.|||.+--++|... +| ..+..+.|+ +++--|.+++|+++|+.....|+.|+.++|+|
T Consensus 14 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 14 QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL----DTSGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE----ETTEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred CCceEEEEEEEEeccceEEecCCCCceEEEEEEE----CCCCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 56789999999888876543 23 234455554 23349999999999999999999999999998
No 37
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=92.26 E-value=2.4 Score=33.83 Aligned_cols=85 Identities=21% Similarity=0.133 Sum_probs=58.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--CC--CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCC
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--AS--HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~--~~--~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~sy 142 (307)
-|+|.|.|-|-+..- .-+ -.+.-...+|...| .+ =|||+-+-+-|.||-.+.+|.+|=.-|.|+|-|++..
T Consensus 6 gMLN~V~LEG~IeS~---kWS-~kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~- 80 (110)
T 2hql_A 6 GMLNRVFLEGEIESS---CWS-VKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYL- 80 (110)
T ss_dssp -CCEEEEEEEEEEEE---EEC-TTCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEE-
T ss_pred ceEEEEEEeeeeehh---ccc-ccCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH-
Confidence 489999999987542 122 12222234555555 33 3689999999999999999999999999999998753
Q ss_pred CcC--CeEEEEEEEeEE
Q 021789 143 AIE--GQANVQVMVHSL 157 (307)
Q Consensus 143 edk--~rs~~eViVe~I 157 (307)
++ +.-...|.|..|
T Consensus 81 -ekkS~iWKTtI~~~KI 96 (110)
T 2hql_A 81 -ERKSEIWKTTIEIVKI 96 (110)
T ss_dssp -ETTTTEEEEEEEEEEE
T ss_pred -HHhcccceeEEEEEEE
Confidence 33 434445555443
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=91.91 E-value=1.4 Score=47.85 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=65.9
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 68 l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~--~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
-.+.|++.|.|-. .|.|.+.+|+.+..|.|. +.|+-|.|..|-+-.+. ..+.+++|+.|.|.|.+..++|..+
T Consensus 16 ~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t----d~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~~ 90 (1041)
T 3f2b_A 16 EERRVVVQGYVFD-AEVSELKSGRTLLTMKIT----DYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVRD 90 (1041)
T ss_dssp CEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE----CSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTTE
T ss_pred ccceEEEEEEEEE-EEEEEccCCCEEEEEEEE----eCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCcc
Confidence 4688999999885 899999999988777665 45778999888654443 4567999999999999999998753
Q ss_pred CeEEEEEEEeEEEeecc
Q 021789 146 GQANVQVMVHSLNLIEP 162 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~~ 162 (307)
+.+.+.+|.-+..
T Consensus 91 ----~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 91 ----LVIIANDLNEIAA 103 (1041)
T ss_dssp ----EEEEEEEEEEECC
T ss_pred ----eEEEeeeeEEecc
Confidence 2355556655543
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=89.86 E-value=1.9 Score=35.04 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=55.6
Q ss_pred ccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHH--HHhhcCCCCeEEEEEEe
Q 021789 61 EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQL 137 (307)
Q Consensus 61 tI~~~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~-wI~Vv~wGklAE~--~a~yLkKGD~V~VsGrL 137 (307)
.+...-.-++.|.|+|.|..- +- +.....+.|. +.|- -|.|..|.+..+. ....+..|+.|.|.|+|
T Consensus 23 ~f~i~g~~i~~V~iVG~V~~~-~~-----~~~~~~~~ld----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l 92 (132)
T 3kdf_D 23 VFRIGNVEISQVTIVGIIRHA-EK-----APTNIVYKID----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 92 (132)
T ss_dssp CEEETTEECCEEEEEEEEEEE-EE-----CSSEEEEEEE----CSSSSCEEEEEEC---------CCCCTTCEEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEEE-EE-----cCCeEEEEEE----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE
Confidence 344445558999999998752 21 2223344554 4566 8999999876533 35678999999999999
Q ss_pred eecCCCcCCeEEEEEEEeEEEeeccCC
Q 021789 138 TADPPAIEGQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 138 ~s~syedk~rs~~eViVe~I~FL~~k~ 164 (307)
+.- .++ -+|.+..|.-++..+
T Consensus 93 ~~f--~g~----~qi~~~~ir~v~d~N 113 (132)
T 3kdf_D 93 RSF--QNK----KSLVAFKIMPLEDMN 113 (132)
T ss_dssp EEE--TTE----EEEEEEEEEECSSTH
T ss_pred EeE--CCE----EEEEEEEEEEcCCcc
Confidence 984 232 357777777776654
No 40
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.98 E-value=2 Score=35.03 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=57.8
Q ss_pred CccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH---HHhhcCCCCeEEEEEE
Q 021789 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI---ASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 60 ~tI~~~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~---~a~yLkKGD~V~VsGr 136 (307)
..+...-.-++.|.|+|.|..- +- +.....+.|. +.|--|.|..|....+. -...+..|+.|.|.|+
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~~-~~-----~~~~~~~~ld----D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~ 96 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRNI-SR-----NATNVAYSVE----DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGT 96 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEEE-EE-----CSSEEEEEEE----CSSCEEEEEEECC--------CCSCCTTCEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEEE-Ee-----cCCeEEEEEE----CCCCCEEEEEecccCCcccccccccCCCCEEEEEEE
Confidence 3455555669999999998752 21 2333345554 35567999999876653 3567999999999999
Q ss_pred eeecCCCcCCeEEEEEEEeEEEeeccCC
Q 021789 137 LTADPPAIEGQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 137 L~s~syedk~rs~~eViVe~I~FL~~k~ 164 (307)
|+.. .++ .+|.+..|..++..+
T Consensus 97 v~~f--~g~----~qi~~~~ir~v~d~N 118 (136)
T 4gop_B 97 LKSF--QNR----RSISSGHMRPVIDYN 118 (136)
T ss_dssp EEEE--TTE----EEEEESEEEECSSHH
T ss_pred EEEe--CCE----EEEEEEEEEECCCcc
Confidence 9873 332 367777777776543
No 41
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=87.93 E-value=3.9 Score=40.61 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc----H---HHHHHhhcCCCCeEEEEEEeeecCC
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD----L---AHIASSHLKKDDHVHIAGQLTADPP 142 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGk----l---AE~~a~yLkKGD~V~VsGrL~s~sy 142 (307)
..|.|.|+|.+ +|.. |+.++.+.|- + .+..++|++-.+ + +...++.|..||.|.|+|.+..+.-
T Consensus 37 ~~V~v~GwV~~---~R~~--g~~l~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 107 (487)
T 1eov_A 37 KEVLFRARVHN---TRQQ--GATLAFLTLR-Q---QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDE 107 (487)
T ss_dssp CEEEEEEEEEE---EEEC--SSSEEEEEEE-E---TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred CEEEEEEEEEE---eecc--CCccEEEEEE-E---CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 46999999975 3432 5544444443 2 345789888543 2 2234567999999999999987743
Q ss_pred CcC--CeEEEEEEEeEEEeeccCC
Q 021789 143 AIE--GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 143 edk--~rs~~eViVe~I~FL~~k~ 164 (307)
... ..-.++|.|+++..|....
T Consensus 108 ~~~~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 108 PIKSATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECCC
T ss_pred CCcCCCCCcEEEEEEEEEEeeccc
Confidence 222 3457999999999998654
No 42
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=85.84 E-value=1.3 Score=39.04 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=47.5
Q ss_pred cceEEEEEEeCCCCeEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 021789 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T--~sG-k~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsG 135 (307)
++.+.|.|||.+--++|.. ++| ..+..+.|+ + ++--|.+++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-D---e~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-D---ESGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-C---SSCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEE-C---CCCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 5678999999987776643 223 234444444 2 2238999999999999999999999999999
No 43
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=84.42 E-value=1.4 Score=48.64 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=40.6
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcCCeEEE
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANV 150 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk~rs~~ 150 (307)
.|.+.|-|. ..+.+.|.+|+.++.++|. +.|--+.|++|.+.-+.....|..|..|.|.|+++.+. .+
T Consensus 1044 ~v~v~G~v~-~~~~~~Tk~G~~maf~tle----D~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1044 KVLLSGMVE-EVVRKPTRSGGMMARFTLS----DETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp EEEEEEEEC-CC------------CEEEE----ETTEEEEEC-------------CTTCEEEEEEEEC------------
T ss_pred eEEEEEEEE-EEEEeecCCCCeEEEEEEE----ECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 477888777 4777788899999988887 45667999999999999999999999999999998541 36
Q ss_pred EEEEeEEEeec
Q 021789 151 QVMVHSLNLIE 161 (307)
Q Consensus 151 eViVe~I~FL~ 161 (307)
.|+|++|.-++
T Consensus 1112 ~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1112 RVLAQAVWTLE 1122 (1220)
T ss_dssp CEEEEEEEEHH
T ss_pred EEEEeeeecHH
Confidence 89999987664
No 44
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=83.68 E-value=4.4 Score=34.22 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=44.7
Q ss_pred cceEEEEEEeCCCCeEE---EC--CCC--------cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 021789 69 ANSVNLIGHVDAPVQFQ---TS--SDG--------KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr---~T--~sG--------k~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsG 135 (307)
++.|+|+|+|-.--+.+ .+ .+| ..++...|| ++|--|.+++|++.|+. |+.||.|.|.+
T Consensus 26 ~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg----DeTG~I~ftlW~e~~~~----l~~Gd~v~i~n 97 (145)
T 1wjj_A 26 TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG----DETGCILFTARNDQVDL----MKPGATVILRN 97 (145)
T ss_dssp CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE----CSSCEEEEEECTTHHHH----TCTTCEEEEEE
T ss_pred CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE----cCCcEEEEEEecCCcCc----CCCCCEEEEec
Confidence 67799999987644443 22 134 257777776 67889999999998764 78999999987
Q ss_pred Ee
Q 021789 136 QL 137 (307)
Q Consensus 136 rL 137 (307)
-.
T Consensus 98 a~ 99 (145)
T 1wjj_A 98 SR 99 (145)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 45
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=83.60 E-value=1.9 Score=41.77 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=48.3
Q ss_pred cceEEEEEEeCCCCeEEEC--CCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 021789 69 ANSVNLIGHVDAPVQFQTS--SDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T--~sGk-~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGr 136 (307)
++.+.|.|||..--++|.. ++|. .+..+.|+ + ++--|++++|+++|+.....|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~-D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL-D---DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE-C---SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE-c---CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 4678999999976666643 2332 34455544 2 23389999999999999999999999999983
No 46
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=82.61 E-value=7.9 Score=33.04 Aligned_cols=88 Identities=10% Similarity=0.144 Sum_probs=58.9
Q ss_pred cCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH---HHHHHhhcCCCCeEEEEEEeeec
Q 021789 64 FQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL---AHIASSHLKKDDHVHIAGQLTAD 140 (307)
Q Consensus 64 ~~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl---AE~~a~yLkKGD~V~VsGrL~s~ 140 (307)
|...-++.|.|+|.|..- +-+ .+ +....+++.. ..-|.|++|-.. +......+.-|+.|.|.|+|++.
T Consensus 42 ~~n~PI~~V~IvGiVv~~-~~~----~~---~~~ytIDD~T-G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAAI-DIY----EG---KHVLTVDDCS-GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp ETTEEECEEEEEEEEEEE-EEE----TT---EEEEEEECSS-SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred ECCeEEEEEEEEEEEEEE-EEe----CC---EEEEEEecCC-CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 444448999999999862 221 12 2344555422 237999999776 22334458999999999999874
Q ss_pred CCCcCCeEEEEEEEeEEEeeccCCcc
Q 021789 141 PPAIEGQANVQVMVHSLNLIEPTSQK 166 (307)
Q Consensus 141 syedk~rs~~eViVe~I~FL~~k~~~ 166 (307)
. ++. +|.|+.|..++..+.+
T Consensus 113 r--~~r----qI~~~~i~~v~d~n~E 132 (159)
T 3kf6_A 113 R--SEV----ELIAQSFEELRDPNDE 132 (159)
T ss_dssp S--SSC----EEEEEEEEEECSTHHH
T ss_pred C--CEE----EEEEEEEEECCCcHHH
Confidence 2 222 8889999999876554
No 47
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=80.37 E-value=6.3 Score=38.84 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=55.9
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec-cHHH-HHHhhcCCCCeEEEEEEeeecCCCcCC
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG-DLAH-IASSHLKKDDHVHIAGQLTADPPAIEG 146 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wG-klAE-~~a~yLkKGD~V~VsGrL~s~syedk~ 146 (307)
-..|.|-|+|.. +|. .|+-++.+.|- +.+..++|++-. ++.+ ..+..|..||.|.|+|.+....-....
T Consensus 30 g~~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr----D~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 100 (456)
T 3m4p_A 30 GKLVTFKGWAYH---IRK--ARKTLIFVELR----DGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHP 100 (456)
T ss_dssp SSEEEEEEEEEE---EEC--CSSSEEEEEEE----CSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCC
T ss_pred CCEEEEEEEEEE---Eec--CCCceEEEEEE----eCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccC
Confidence 346899999974 332 34444444443 234469998876 3322 124579999999999999865321111
Q ss_pred e-----EEEEEEEeEEEeeccCC
Q 021789 147 Q-----ANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 147 r-----s~~eViVe~I~FL~~k~ 164 (307)
. -.++|.|+++..|....
T Consensus 101 ~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 101 PEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CSCTTBCSSEEEEEEEEEEECCC
T ss_pred cccCCCCcEEEEEeEEEEEecCC
Confidence 1 35799999999997653
No 48
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=80.05 E-value=15 Score=35.85 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=55.5
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH--HH--HHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL--AH--IASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl--AE--~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
-.|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+. .+ ..++.|..||.|.|+|.+....-
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~--- 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-D---RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK--- 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---
Confidence 46899999975 3332 54 4444443 2 3446999887653 11 23567999999999999987531
Q ss_pred CeEEEEEEEeEEEeeccCC
Q 021789 146 GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~~k~ 164 (307)
....++|.|+++..|....
T Consensus 84 ~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp STTSEEEEEEEEEEEECBC
T ss_pred CCCcEEEEEEEEEEEecCC
Confidence 1124899999999998654
No 49
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=79.27 E-value=6.2 Score=38.46 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=53.5
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH-HHhhcCCCCeEEEEEEeeecCCCcC-Ce
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI-ASSHLKKDDHVHIAGQLTADPPAIE-GQ 147 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~-~a~yLkKGD~V~VsGrL~s~syedk-~r 147 (307)
..|.|.|+|.+ +|.. |+.++.+.|- + .+..++|++-+++.+. ....|..||.|.|+|.+..+. .+. ..
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~ 81 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFILR-D---GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP-EGKEAP 81 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEEE-C---SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC-------
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEEE-E---CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC-CCcCCC
Confidence 36999999975 4433 4334444443 2 3456999887554321 112699999999999998752 111 12
Q ss_pred EEEEEEEeEEEeecc
Q 021789 148 ANVQVMVHSLNLIEP 162 (307)
Q Consensus 148 s~~eViVe~I~FL~~ 162 (307)
-.++|.|+++..|..
T Consensus 82 g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 82 NGHELIADFWKIIGN 96 (435)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEeec
Confidence 247999999999985
No 50
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=79.13 E-value=8.1 Score=35.11 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCCe-eEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCCcCCeEEEEEEEeEEEeeccCCc
Q 021789 104 SHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQ 165 (307)
Q Consensus 104 ~~T~-wI~Vv~wGklAE~--~a~yLkKGD~V~VsGrL~s~syedk~rs~~eViVe~I~FL~~k~~ 165 (307)
+.|- -|.|.+|....+. ....++.|+.|.|.|+|+.. .+ ..+|.+..|..+...+.
T Consensus 96 D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f--~g----~~qi~i~~ir~v~d~nE 154 (270)
T 2pi2_A 96 DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF--QN----KKSLVAFKIMPLEDMNE 154 (270)
T ss_dssp CSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE--TT----EEEEEEEEEEECSCTHH
T ss_pred CCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEec--CC----eeEEEEEEEEecCCHhH
Confidence 3565 7999999876432 34568999999999999974 22 23677777777776554
No 51
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=78.84 E-value=10 Score=36.88 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=55.0
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH----HHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl----AE~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+. +-..++.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~---~ 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIR-D---STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE---R 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC---C
Confidence 46999999975 3433 55 4443333 2 3456999986432 112346799999999999998763 1
Q ss_pred CeEEEEEEEeEEEeeccC
Q 021789 146 GQANVQVMVHSLNLIEPT 163 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~~k 163 (307)
+...++|.|+++..|...
T Consensus 84 ~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeecC
Confidence 223589999999999865
No 52
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=78.36 E-value=9.1 Score=37.32 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=54.9
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--HHHHHHhhcCCCCeEEEEEEeeecCCCcCCe
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LAHIASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGk--lAE~~a~yLkKGD~V~VsGrL~s~syedk~r 147 (307)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+ ..+ .++.|..||.|.|+|.+.... .+.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~v~~~~---~~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-D---KTGLGQVVVDKNSSAFG-ISQELTQESVIQVRGIVKADK---RAP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEECTTSTTHH-HHTTCCTTCEEEEEEEEEECS---SSG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChHHHH-HHHhCCCCCEEEEEEEEEecC---CCC
Confidence 46999999975 3433 55 4444333 2 345689888643 222 336799999999999998763 122
Q ss_pred EEEEEEEeEEEeeccC
Q 021789 148 ANVQVMVHSLNLIEPT 163 (307)
Q Consensus 148 s~~eViVe~I~FL~~k 163 (307)
..++|.|+++..|...
T Consensus 83 ~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RGIELHAEEITLLSKA 98 (429)
T ss_dssp GGEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3589999999999865
No 53
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=77.68 E-value=13 Score=36.29 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=58.6
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec--cHHHHHHhhcCCCCeEEEEEEeeecCCCc
Q 021789 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG--DLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (307)
Q Consensus 67 ~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wG--klAE~~a~yLkKGD~V~VsGrL~s~syed 144 (307)
+.+-++.+.|.|...|... .+|-. .|+|-- ++.-|+|++|. +-...+...|..||.|.|-|.+...
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGHV--~f~l~d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~g---- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGHV--FFEIDT----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKD---- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTEE--EEEEEE----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEETT----
T ss_pred ccCceEEEEEEEecCcEec--cCceE--EEEEEc----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecCC----
Confidence 4577889999999877653 34543 466663 36679999999 5566678889999999999997752
Q ss_pred CCeEEEEEEEeEEEeecc
Q 021789 145 EGQANVQVMVHSLNLIEP 162 (307)
Q Consensus 145 k~rs~~eViVe~I~FL~~ 162 (307)
.+.++.+..+.-
T Consensus 350 ------tLnvEk~~v~~l 361 (402)
T 3au7_A 350 ------TINLEKIQIVEL 361 (402)
T ss_dssp ------EEEEEEEEEEEC
T ss_pred ------EEEEEEEEEccc
Confidence 777888877754
No 54
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=77.49 E-value=11 Score=34.18 Aligned_cols=102 Identities=9% Similarity=0.065 Sum_probs=63.8
Q ss_pred cccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCC-CCeeEEEEEeccHHHHHHhh---cCCCCeEEEEEEe
Q 021789 62 IPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAAS-HSLWIPILFEGDLAHIASSH---LKKDDHVHIAGQL 137 (307)
Q Consensus 62 I~~~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~-~T~wI~Vv~wGklAE~~a~y---LkKGD~V~VsGrL 137 (307)
+=|.-.-+|.|.++|.|..--+.-.-..|.-..+..+.+++.+ ....+.|.+--..+-.+.-- .--|..|.|.|.+
T Consensus 78 ~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i 157 (220)
T 3kf8_A 78 VLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEI 157 (220)
T ss_dssp EEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEE
T ss_pred EEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEE
Confidence 3344455899999999987544322223434445667777633 34577776654433222211 2369999999999
Q ss_pred eecC--CCcCCeEEEEEEEeEEEeeccC
Q 021789 138 TADP--PAIEGQANVQVMVHSLNLIEPT 163 (307)
Q Consensus 138 ~s~s--yedk~rs~~eViVe~I~FL~~k 163 (307)
.+.. +...+...-||.|+.|.+|+..
T Consensus 158 ~~~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 158 YNWYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EECCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred EeeccccccccccceEEEEEEEEEeccC
Confidence 9842 3222444449999999999876
No 55
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=75.89 E-value=10 Score=38.01 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHH---H---HHHhhcCCCCeEEEEEEeeecCCCc
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA---H---IASSHLKKDDHVHIAGQLTADPPAI 144 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklA---E---~~a~yLkKGD~V~VsGrL~s~syed 144 (307)
.|.|-|+|.. +|.. |+.++.+.|- + .+.-|+|++-.+.. + .+.+.|..||.|.|+|.+....
T Consensus 57 ~V~v~Grv~~---~R~~--gkk~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~--- 124 (521)
T 3bju_A 57 TLKVAGRIHA---KRAS--GGKLIFYDLR-G---EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK--- 124 (521)
T ss_dssp CEEEEEEEEE---EEES--SSSEEEEEEE-E---TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT---
T ss_pred EEEEEEEEEE---EecC--CCCcEEEEEE-E---CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 5999999975 4443 5234444443 2 34679998865421 1 2345799999999999998763
Q ss_pred CCeEEEEEEEeEEEeeccC
Q 021789 145 EGQANVQVMVHSLNLIEPT 163 (307)
Q Consensus 145 k~rs~~eViVe~I~FL~~k 163 (307)
.+ .++|.|+++..|.+.
T Consensus 125 ~g--e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 KG--ELSIIPYEITLLSPC 141 (521)
T ss_dssp TC--CEEEEEEEEEEEECC
T ss_pred CC--CEEEEEeEEEEeecC
Confidence 12 489999999999754
No 56
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=74.17 E-value=11 Score=36.72 Aligned_cols=75 Identities=13% Similarity=0.294 Sum_probs=53.2
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcC-CCCeEEEEEEeeecCCCcCCe
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLK-KDDHVHIAGQLTADPPAIEGQ 147 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLk-KGD~V~VsGrL~s~syedk~r 147 (307)
-..|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-. +.|. .||.|.|+|.+....- +.
T Consensus 13 ~~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~---~~ 72 (422)
T 1n9w_A 13 GQEVELLGFLHW---RRDL--GR-IQFLLLR-D---RSGVVQVVTGG-------LKLPLPESALRVRGLVVENAK---AP 72 (422)
T ss_dssp TSEEEEEEEEEE---EEEC--SS-EEEEEEE-E---TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTT---ST
T ss_pred CCEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCC---CC
Confidence 346999999975 4443 55 4444443 2 34568888754 6799 9999999999987631 22
Q ss_pred EEEEEEEeEEEeeccC
Q 021789 148 ANVQVMVHSLNLIEPT 163 (307)
Q Consensus 148 s~~eViVe~I~FL~~k 163 (307)
..++|.|+++..|...
T Consensus 73 ~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPA 88 (422)
T ss_dssp TSEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3589999999999865
No 57
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=73.32 E-value=15 Score=37.19 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.9
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--H---HHHHHhhcCCCCeEEEEEEeeecCCCc
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--L---AHIASSHLKKDDHVHIAGQLTADPPAI 144 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGk--l---AE~~a~yLkKGD~V~VsGrL~s~syed 144 (307)
-.|.|-|+|.. +|. .|+ ++.+.|- + .+..|+|++-.+ . .-..++.|..||.|.|+|.+....-..
T Consensus 63 ~~V~v~Gwv~~---~R~--~gk-l~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 132 (548)
T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MVFLFLR-K---GIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI 132 (548)
T ss_dssp CEEEEEEEEEE---EEE--CSS-EEEEEEE-E---TTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEE---Eec--CCC-eEEEEEE-E---CCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc
Confidence 46899999975 343 254 4444443 2 345888888752 1 112356799999999999999864322
Q ss_pred C--CeEEEEEEEeEEEeeccCC
Q 021789 145 E--GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 145 k--~rs~~eViVe~I~FL~~k~ 164 (307)
+ ....++|.|++|..|....
T Consensus 133 ~~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 133 EKATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp TTSSSCSEEEEEEEEEEEECCC
T ss_pred ccCCCCcEEEEEeEEEEEecCC
Confidence 2 2356899999999998653
No 58
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=71.95 E-value=17 Score=36.03 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=53.7
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HHH---HHHhhcCCCCeEEEEEEeeecCCCcCC
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGk-lAE---~~a~yLkKGD~V~VsGrL~s~syedk~ 146 (307)
.|.|.|+|.. +|.. |+ ++.+.|- + .+..|+|++-.+ +.+ ...+.|..||.|.|+|.+....- +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~---g 124 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQ-D---VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKV---G 124 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTT---C
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---C
Confidence 6999999975 3433 55 3333333 2 345799988654 222 13467999999999999987521 2
Q ss_pred eEEEEEEEeEEEeeccC
Q 021789 147 QANVQVMVHSLNLIEPT 163 (307)
Q Consensus 147 rs~~eViVe~I~FL~~k 163 (307)
.++|.|+++..|...
T Consensus 125 --e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 125 --ELSIKVSSYEFLTKA 139 (493)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEcccc
Confidence 579999999999865
No 59
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=69.54 E-value=16 Score=28.71 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=43.1
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeeec
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~Vs-GrL~s~ 140 (307)
...|.++|+|-.--+ ..+|..+....|+ ++|--|++++|++- .+..++.|+.|.|. |+.+..
T Consensus 15 ~~~v~v~~~V~~~~~---~~~~~~~~~~~l~----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 15 GQWANLKAKVIQLWE---NTHESISQVGLLG----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp TCEEEEEEEEEEEEE---CCCSSEEEEEEEE----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeEc---CCCCeEEEEEEEE----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEEE
Confidence 467899998875322 3345554444454 56778999999944 23579999999999 677663
No 60
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=68.28 E-value=17 Score=36.91 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=55.6
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCC---cC
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPA---IE 145 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~--~a~yLkKGD~V~VsGrL~s~sye---dk 145 (307)
.|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+..+. .++.|..||.|.|+|.+..+.-. .+
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMR-D---REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRD 86 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccccc
Confidence 5999999975 3433 44 3333333 2 3456999886554332 34679999999999999876321 11
Q ss_pred -CeEEEEEEEeEEEeeccCC
Q 021789 146 -GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 146 -~rs~~eViVe~I~FL~~k~ 164 (307)
..-.++|.|+++..|....
T Consensus 87 ~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC
T ss_pred CCCccEEEEEeEEEEEeccC
Confidence 2234899999999998653
No 61
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=67.52 E-value=24 Score=35.15 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HH----HHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LA----HIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGk-lA----E~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
.|.|.|+|-. +|.. |+. +.+.|- + .+..|+|++-.+ +. +..++.|..||.|.|+|.+....-
T Consensus 66 ~V~v~Gwv~~---~R~~--gk~-~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~--- 132 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GKA-SFVTLQ-D---VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQT--- 132 (504)
T ss_dssp EEEEEEEEEE---EEEE--TTE-EEEEEE-E---TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTT---
T ss_pred EEEEEEEEEE---EecC--CCc-EEEEEE-E---CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCC---
Confidence 6999999975 3433 553 333333 2 345799988644 21 113467999999999999987521
Q ss_pred CeEEEEEEEeEEEeeccC
Q 021789 146 GQANVQVMVHSLNLIEPT 163 (307)
Q Consensus 146 ~rs~~eViVe~I~FL~~k 163 (307)
+ .++|.|+++..|...
T Consensus 133 g--e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 G--ELSIHCTELRLLTKA 148 (504)
T ss_dssp C--CEEEEEEEEEEEECC
T ss_pred c--eEEEEEEEEEEeccc
Confidence 2 579999999999865
No 62
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=67.49 E-value=15 Score=37.17 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=54.9
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-HHHHHhhcCCCCeEEEEEEeeecCCCc-C-Ce
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQLTADPPAI-E-GQ 147 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl-AE~~a~yLkKGD~V~VsGrL~s~syed-k-~r 147 (307)
.|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+. +-..++.|..||.|.|+|.+..+.-.. + ..
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ 87 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLR-D---REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLAT 87 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTT
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCC
Confidence 5999999975 3433 44 3333333 2 3456888886542 112346799999999999998875111 1 22
Q ss_pred EEEEEEEeEEEeeccCC
Q 021789 148 ANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 148 s~~eViVe~I~FL~~k~ 164 (307)
-.++|.|+++..|....
T Consensus 88 ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 88 GRVEVELSALEVLAEAK 104 (580)
T ss_dssp TTEEEEEEEEEEEECCC
T ss_pred ccEEEEEeEEEEeccCc
Confidence 34899999999998653
No 63
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=66.72 E-value=12 Score=32.78 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=41.2
Q ss_pred eEEEEEEeCCCCeEEE---CCCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCC
Q 021789 71 SVNLIGHVDAPVQFQT---SSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~---T~sGk~va~fsLAv~~~~~T~-wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~sy 142 (307)
.|.+||.|..--+++. -.+|+....-.+... +++. -++|++||+.|+.+. ...|+.|.+.|--. ..|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~--D~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~v-~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM--DTSGKVVTATLWGEDADKFD--GSRQPVLAIKGARV-SDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE--CTTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEEE-ECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE--CCCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEEE-Eec
Confidence 5888898874433322 225654433333332 2344 599999999998754 57888777776433 345
No 64
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=63.48 E-value=38 Score=34.03 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-H-H--HHHhhcCCCCeEEEEEEeeecCCCcCC
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A-H--IASSHLKKDDHVHIAGQLTADPPAIEG 146 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl-A-E--~~a~yLkKGD~V~VsGrL~s~syedk~ 146 (307)
.|.|.|+|-. +|.. |+ ++.+.|- + .+.-|+|++-.+. . + ...+.|..||.|.|+|.+.... .+
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~Fi~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---~g 154 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-ASFATVQ-D---GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---KG 154 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-C---SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---TS
T ss_pred EEEEEEEEEe---eecC--CC-eEEEEEE-e---CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC---CC
Confidence 6999999975 3433 55 3333332 2 2357888886542 1 1 2345799999999999998632 12
Q ss_pred eEEEEEEEeEEEeeccCC
Q 021789 147 QANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 147 rs~~eViVe~I~FL~~k~ 164 (307)
.++|.|++|.+|....
T Consensus 155 --elel~~~~i~vLs~a~ 170 (529)
T 4ex5_A 155 --ELSVKCTQLRLLAKAL 170 (529)
T ss_dssp --CEEEEEEEEEEEECCS
T ss_pred --cEEEEEEEEEEEecCC
Confidence 4899999999997653
No 65
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=61.39 E-value=19 Score=32.39 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=38.5
Q ss_pred CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCC--c-C--CeEEEEEEEeEEEeec
Q 021789 105 HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA--I-E--GQANVQVMVHSLNLIE 161 (307)
Q Consensus 105 ~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~sye--d-k--~rs~~eViVe~I~FL~ 161 (307)
-+--+.|.+-++|.+ .++.||+|.|.|-+...... . . .....-|.|..|..++
T Consensus 209 ~Prsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 209 LPRQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCCEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CCcEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 357899999999875 57999999999999886543 1 1 2345566777776654
No 66
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=58.08 E-value=7.4 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.6
Q ss_pred eEEEEEeccHHHHHHhhcCCCCeEEEE
Q 021789 108 WIPILFEGDLAHIASSHLKKDDHVHIA 134 (307)
Q Consensus 108 wI~Vv~wGklAE~~a~yLkKGD~V~Vs 134 (307)
=++|++|+..|..+.++|+.||-|.+.
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 479999999999999999999999864
No 67
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=51.10 E-value=16 Score=35.16 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=42.1
Q ss_pred eEEEEEEeCCCCeEEEC---CCCcE--EEEEEEEEcCCCCC-eeEEEEEeccHHHHHHh--hcCCCCeEEEEEEeeecCC
Q 021789 71 SVNLIGHVDAPVQFQTS---SDGKH--WAGTVIVQHAASHS-LWIPILFEGDLAHIASS--HLKKDDHVHIAGQLTADPP 142 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T---~sGk~--va~fsLAv~~~~~T-~wI~Vv~wGklAE~~a~--yLkKGD~V~VsGrL~s~sy 142 (307)
.|.+||.|..--+++.. .+|+. ...+.|. +++ .-|+|++||+.|+.+.. ....|+.|.|.|-.. ..|
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~----D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV-~~f 209 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLV----DQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKV-GDF 209 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEE----CTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEE-ECT
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEE----eCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEE-eec
Confidence 46777877653333322 24653 3334443 234 47999999999987552 267889888887433 346
Q ss_pred Cc
Q 021789 143 AI 144 (307)
Q Consensus 143 ed 144 (307)
.+
T Consensus 210 ~G 211 (444)
T 4gop_C 210 GG 211 (444)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 68
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=44.04 E-value=83 Score=32.28 Aligned_cols=82 Identities=11% Similarity=0.255 Sum_probs=53.7
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH----HHHHHhhcCCCCeEEEEEEeeecCCCc-
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAI- 144 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGkl----AE~~a~yLkKGD~V~VsGrL~s~syed- 144 (307)
-.|.|.|+|.+- | ++. |.. .++ .+-.++|++-.+. +...++.|..|+.|.|+|.+..+.-..
T Consensus 25 ~~V~l~GwV~~~---R---~~~----Fi~-LrD--~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 91 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----FLV-LRD--FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQE 91 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----EEE-EEC--SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCC
T ss_pred CEEEEEEEeeee---c---CeE----EEE-EEe--CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCcccc
Confidence 369999999863 2 122 322 222 2447888876543 123456799999999999998763211
Q ss_pred --C-CeEEEEEEEeEEEeeccCC
Q 021789 145 --E-GQANVQVMVHSLNLIEPTS 164 (307)
Q Consensus 145 --k-~rs~~eViVe~I~FL~~k~ 164 (307)
+ ..-.++|.|++|..|....
T Consensus 92 n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 92 NPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CTTSTTTTEEEEEEEEEEEECBC
T ss_pred CccCCCCcEEEEEeEEEEeecCC
Confidence 1 1224899999999998654
No 69
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=40.50 E-value=24 Score=30.07 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=53.5
Q ss_pred cccc-eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--------CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 021789 67 KVAN-SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--------ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (307)
Q Consensus 67 ~l~N-~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~--------~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL 137 (307)
.|-+ .|.|-|.+. + +....+|+ +..|.|.=-- .-....|-|.+=...+ .-.--|.|.|+|+|
T Consensus 51 ~LdGk~VripGfvv-P--Le~~~~~~-vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L 121 (150)
T 4hsp_A 51 ALDGIEAKLPGYIV-P--LEISEAGL-VTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTF 121 (150)
T ss_dssp GGTTEEEEEEEEEE-E--EEECTTSE-EEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEE
T ss_pred hhCCCEEEeccEEE-E--eccCCCCc-EEEEEEeCCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEE
Confidence 4433 577778886 2 32333343 5677665221 1123677776544332 11234899999999
Q ss_pred eecCCCcC-CeEEEEEEEeEEEee
Q 021789 138 TADPPAIE-GQANVQVMVHSLNLI 160 (307)
Q Consensus 138 ~s~syedk-~rs~~eViVe~I~FL 160 (307)
+....+.+ ..+.|.+.++.|.--
T Consensus 122 ~~~~~~~~l~~~~Y~m~a~~i~~y 145 (150)
T 4hsp_A 122 KVENASSELAAAGYRMQASKVTPY 145 (150)
T ss_dssp ECCCEECSSCEESEEEEEEEEEEC
T ss_pred EEeeecccceeEEeEEeeeEEEEe
Confidence 99998777 889999999988643
No 70
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.26 E-value=36 Score=30.83 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred CeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC-CeEEEEEEEeEEEeec
Q 021789 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE-GQANVQVMVHSLNLIE 161 (307)
Q Consensus 106 T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk-~rs~~eViVe~I~FL~ 161 (307)
+--+.|.+-++|.+ .++.||+|.|.|-+.... .+. .....-|.|..|...+
T Consensus 197 Prsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~-~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 197 PRQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR-DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CCEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE-ETTTTEEEEEEEEEECCBC-
T ss_pred CeEEEEEEcccccC----ccCCCCEEEEEEEEEEee-CCCCceEEEEEEEEEEEEec
Confidence 47899999999865 579999999999998763 222 4455566777666544
No 71
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.95 E-value=28 Score=36.33 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCC--CCeEEEEEEeee
Q 021789 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKK--DDHVHIAGQLTA 139 (307)
Q Consensus 70 N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkK--GD~V~VsGrL~s 139 (307)
..|++.|.|..-...+. .+... +.+.+.+ .+..+.+++|+.- .+.+.++. |+.|.|.|++..
T Consensus 166 ~~~~~~~~v~~~~~~~~--~~~~~--~~~~~~d--~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKF--QNMNI--LTAVLSD--GLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCCEEEECCCCCEEEEC--SSCEE--EEEEECC--SSCCEEEEECSCC--TTHHHHHTTCSSCEEEEEEECS
T ss_pred CEEEEEEEEEEEEeecC--CCCeE--EEEEEEE--CCceEEEEEECcH--HHHhhCccCCCCEEEEEEEEEE
Confidence 38899999998655433 23333 3333332 3446889999842 35667889 999999999986
No 72
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=30.06 E-value=85 Score=28.48 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=48.6
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 021789 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (307)
Q Consensus 69 ~N~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~s~syedk 145 (307)
-..|.+||-|..--..+.+.+...++.|+|.=.. . .-+.|.+|.+..+.+-.-.+.||.|.+. +++...|.++
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S-~--~gl~v~iF~~~~~~LP~v~~~GDII~l~-~vki~~~~g~ 87 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-N--VKLTCLLFSGNYEALPIIYKNGDIVRFH-RLKIQVYKKE 87 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTT-C--CEEEEEEEESSGGGSCCCCSTTCEEEEE-EEEEEEETTE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCC-C--CCEEEEEECCChHHCCCCCCCCCEEEEE-EEEEEEECCe
Confidence 4568899988643344555545677777666221 1 2399999998777666556999988887 4555566555
No 73
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=29.01 E-value=1.1e+02 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.5
Q ss_pred ccHHHHHHhhcCCCCeEEEEEEeeecCC
Q 021789 115 GDLAHIASSHLKKDDHVHIAGQLTADPP 142 (307)
Q Consensus 115 GklAE~~a~yLkKGD~V~VsGrL~s~sy 142 (307)
|.....+.++++.||.|.|.|-...-.+
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~~ 110 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFFY 110 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccCc
Confidence 7777888788999999999997754433
No 74
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=26.42 E-value=65 Score=28.36 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=42.8
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 021789 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (307)
Q Consensus 71 ~V~LIGrLg~DPElr~T~sGk~va~fsLAv~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGr 136 (307)
....+|-|....+.+.+.+|+.++...|.-=. +....+.|-+||+..+. .-.+..|+.|+|-.-
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~-~~~~~V~lfLFg~a~~~-~~k~~~G~ViaiLNP 120 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK-DLDKYISLFLFGDVHKE-HWKTDQGTVIGLLNA 120 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS-STTCCEEEEECHHHHHH-HTTCCTTEEEEEESC
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC-CCCcEEEEEEechHHHH-hcCcCCceEEEEECC
Confidence 57889999998888889899987766665211 22357999999998877 445999999998753
No 75
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=26.28 E-value=52 Score=27.41 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=50.1
Q ss_pred eeeeeCCccccCCcc-ccccccccCcceeeccCCCCCCCCCccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEE
Q 021789 21 RIILYSPAHFTRPFS-SRAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIV 99 (307)
Q Consensus 21 ~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~prP~tI~~~p~l~N~V~LIGrLg~DPElr~T~sGk~va~fsLA 99 (307)
.+.+..|+.|..... .....-+.-.+.|... .+|.| +|.|... .-.+......+..+....+|.........
T Consensus 100 ~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~---G~P~P-~v~W~~~---~~~~~~~~~~~~r~~~~~~g~l~il~i~~ 172 (203)
T 4fa8_A 100 HLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN---AFPHP-HVQWLMP---EGVEPAPTAANGGVMKEKDGSLSVAVDLS 172 (203)
T ss_dssp EEEEEEEEEEEEEEEECCSSCSCCEEEEEEEE---EESCC-EEEECCC---------------CCEECTTSCEEEEEEEE
T ss_pred EEEecCCceeeecceeEEEcCCCEEEEEEEcC---CCCCC-EEEEEEC---CeeecCcccccceEEEeCCCCEEEEEECC
Confidence 344455555543322 2222222236788753 35766 7999542 11222223334455666788754333233
Q ss_pred EcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 021789 100 QHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (307)
Q Consensus 100 v~~~~~T~wI~Vv~wGklAE~~a~yLkKGD~V~VsGrL~ 138 (307)
+.. ++.--..|++-+..++. ..|+|+|.|.
T Consensus 173 v~~-~D~G~YtC~A~N~~G~a--------~~v~vs~y~s 202 (203)
T 4fa8_A 173 LPK-PWHLPVTCVGKNDKEEA--------HGVYVSGYLS 202 (203)
T ss_dssp ECS-SCCCCEEEEEESSSCEE--------EEEEEECCC-
T ss_pred CCH-HHCEEEEEEEEcCCCEE--------EEEEEEEEEC
Confidence 433 44556789998876542 2578888764
Done!