BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021791
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED 137
+G+ +T FS YS H +LS D ++ +K I PT A + SC
Sbjct: 208 QGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESP 267
Query: 138 AEELLGEMVRNGVSP 152
+ L +R + P
Sbjct: 268 TPQALATGIRKALQP 282
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 133 GRIEDAEELLGEMVRNGVSPSAETYN-----CFFKEYRGRKDANGAMK----LYRQMKED 183
G + +A L E RNGV S YN C E N + +++QM D
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99
Query: 184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK 238
+ VPN T+ + +A + +M ++ +K + L SY + G C K
Sbjct: 100 KV-VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 68 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-------KPQLS--LDKLNFMKEKGICPT 118
A +++DE R G++ ++++L+V S A P LS D M + P
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104
Query: 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYR 178
AT+T+ + + E A +++ +M G+ P +Y + + DA+ A ++
Sbjct: 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Query: 179 QM 180
M
Sbjct: 165 HM 166
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 35 VEPNVVTYNVLLNGVCRRASLHPNERF----EKTIRNAEKVFDEMRVR 78
V+ V+ + V+L RA L P + E+ ++NAE V++ +R +
Sbjct: 33 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ 80
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 35 VEPNVVTYNVLLNGVCRRASLHPNERF----EKTIRNAEKVFDEMRVR 78
V+ V+ + V+L RA L P + E+ ++NAE V++ +R +
Sbjct: 254 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ 301
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T07|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T0T|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
Length = 606
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 114 GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN-CFFKEYRGRKDANG 172
G+ P + K +C+ G ++EE++ +++ G++ + ++ +E++GR D
Sbjct: 13 GLVPRGSHMMRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDT-- 70
Query: 173 AMKLYRQMKED-----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL------ 221
K+ +++ + D P I T+N+ G+ + L R + V N V+G+
Sbjct: 71 IRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMNEVEGTPEKFSVTY 129
Query: 222 -----GLDLDSYTMLIHGLCEKQ 239
+ + SY +L GL E Q
Sbjct: 130 ENLINDVQVGSYILLDDGLIELQ 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,114,121
Number of Sequences: 62578
Number of extensions: 360763
Number of successful extensions: 689
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 9
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)