Query 021791
Match_columns 307
No_of_seqs 506 out of 1350
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 05:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-53 3.6E-58 376.6 32.4 287 2-299 470-758 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.6E-53 1.2E-57 373.2 32.3 294 2-306 435-730 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-48 5.5E-53 340.0 26.1 286 2-306 187-473 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.4E-47 1.4E-51 338.4 26.8 290 2-306 251-636 (857)
5 PLN03081 pentatricopeptide (PP 100.0 6.8E-46 1.5E-50 324.8 25.8 296 2-306 121-437 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.3E-46 7.2E-51 333.8 24.0 285 2-305 150-434 (857)
7 PRK11788 tetratricopeptide rep 99.9 4.6E-22 1E-26 164.3 30.5 280 3-299 68-357 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 155.4 30.9 265 10-290 41-312 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.2E-19 6.9E-24 162.6 33.1 268 3-290 600-867 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-18 3E-23 158.4 33.7 221 62-290 580-800 (899)
11 PRK15174 Vi polysaccharide exp 99.8 2.4E-16 5.2E-21 137.1 32.9 267 5-290 111-382 (656)
12 PRK15174 Vi polysaccharide exp 99.8 4.7E-16 1E-20 135.3 32.8 270 4-291 76-349 (656)
13 KOG4422 Uncharacterized conser 99.8 1.5E-16 3.2E-21 123.9 26.1 204 3-220 206-463 (625)
14 PF13429 TPR_15: Tetratricopep 99.8 2.6E-18 5.6E-23 135.1 12.6 262 9-287 13-275 (280)
15 TIGR00990 3a0801s09 mitochondr 99.8 8.3E-15 1.8E-19 127.6 34.5 188 99-291 309-498 (615)
16 TIGR00990 3a0801s09 mitochondr 99.8 4.5E-15 9.8E-20 129.3 30.9 258 17-290 307-572 (615)
17 KOG4626 O-linked N-acetylgluco 99.7 5.3E-15 1.2E-19 120.5 24.1 279 4-293 116-489 (966)
18 KOG4422 Uncharacterized conser 99.7 6.5E-15 1.4E-19 114.9 21.6 251 36-300 204-473 (625)
19 PRK10747 putative protoheme IX 99.7 1.1E-13 2.3E-18 113.9 30.2 251 15-287 129-388 (398)
20 KOG4626 O-linked N-acetylgluco 99.7 8.4E-15 1.8E-19 119.3 21.1 273 6-290 220-524 (966)
21 KOG1126 DNA-binding cell divis 99.7 2.9E-14 6.2E-19 116.9 23.5 266 6-292 355-623 (638)
22 PRK09782 bacteriophage N4 rece 99.7 4.7E-13 1E-17 120.0 32.7 264 3-289 476-740 (987)
23 PRK11447 cellulose synthase su 99.7 4.8E-13 1E-17 124.2 33.0 269 3-289 302-700 (1157)
24 TIGR00540 hemY_coli hemY prote 99.7 3.4E-13 7.4E-18 111.6 28.7 262 10-288 124-398 (409)
25 PF13429 TPR_15: Tetratricopep 99.7 1.3E-15 2.8E-20 119.8 12.4 233 3-253 43-276 (280)
26 PRK11447 cellulose synthase su 99.7 4.9E-13 1.1E-17 124.2 31.1 260 7-287 464-738 (1157)
27 TIGR02521 type_IV_pilW type IV 99.6 1.8E-12 3.8E-17 99.3 25.5 204 82-289 29-232 (234)
28 PRK09782 bacteriophage N4 rece 99.6 4.6E-12 9.9E-17 113.7 30.2 232 38-290 476-707 (987)
29 PRK10747 putative protoheme IX 99.6 9.2E-12 2E-16 102.6 30.0 253 17-291 97-359 (398)
30 KOG1155 Anaphase-promoting com 99.6 4.6E-12 1E-16 100.1 25.8 193 88-285 334-532 (559)
31 PRK12370 invasion protein regu 99.6 1.7E-11 3.6E-16 105.4 31.9 275 3-290 255-536 (553)
32 PF13041 PPR_2: PPR repeat fam 99.6 3.1E-15 6.7E-20 84.2 6.1 50 2-51 1-50 (50)
33 COG3071 HemY Uncharacterized e 99.6 2.6E-11 5.6E-16 94.2 28.9 256 17-288 97-389 (400)
34 COG2956 Predicted N-acetylgluc 99.6 7.7E-12 1.7E-16 94.5 25.1 224 17-254 48-278 (389)
35 PRK10049 pgaA outer membrane p 99.6 2.7E-11 5.9E-16 108.0 33.3 277 7-289 119-456 (765)
36 PRK12370 invasion protein regu 99.6 1.3E-11 2.9E-16 106.0 29.1 238 37-288 254-501 (553)
37 PRK10049 pgaA outer membrane p 99.6 3.8E-11 8.3E-16 107.0 32.4 266 9-290 20-340 (765)
38 TIGR02521 type_IV_pilW type IV 99.6 1.4E-11 3E-16 94.4 24.9 203 37-254 29-232 (234)
39 COG2956 Predicted N-acetylgluc 99.6 6.1E-11 1.3E-15 89.8 27.1 276 5-297 70-355 (389)
40 TIGR00540 hemY_coli hemY prote 99.6 1.8E-11 3.8E-16 101.5 27.1 263 16-296 96-371 (409)
41 PRK14574 hmsH outer membrane p 99.5 5.5E-11 1.2E-15 104.9 29.9 224 62-289 115-396 (822)
42 KOG1126 DNA-binding cell divis 99.5 4.8E-12 1.1E-16 104.1 20.8 250 19-289 334-586 (638)
43 KOG1129 TPR repeat-containing 99.5 3.7E-12 8E-17 96.5 18.2 237 38-291 222-460 (478)
44 PRK14574 hmsH outer membrane p 99.5 3.3E-10 7.2E-15 100.0 32.4 159 128-287 301-477 (822)
45 KOG1155 Anaphase-promoting com 99.5 1.9E-10 4.2E-15 91.1 27.1 220 64-288 242-494 (559)
46 KOG4318 Bicoid mRNA stability 99.5 1E-12 2.2E-17 111.3 15.3 248 25-304 11-280 (1088)
47 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.3E-18 77.9 6.4 50 223-272 1-50 (50)
48 KOG1129 TPR repeat-containing 99.5 9.3E-12 2E-16 94.3 18.5 211 83-299 222-434 (478)
49 KOG4318 Bicoid mRNA stability 99.5 5.4E-12 1.2E-16 107.0 17.1 244 1-275 22-286 (1088)
50 KOG2003 TPR repeat-containing 99.5 4.5E-11 9.8E-16 94.7 21.1 253 12-275 427-709 (840)
51 COG3063 PilF Tfp pilus assembl 99.4 5.7E-10 1.2E-14 80.7 22.3 199 86-288 37-235 (250)
52 COG3071 HemY Uncharacterized e 99.4 2.6E-09 5.7E-14 83.3 26.9 236 4-259 153-395 (400)
53 KOG2076 RNA polymerase III tra 99.4 4.1E-09 8.8E-14 90.1 29.4 264 12-288 147-477 (895)
54 KOG2002 TPR-containing nuclear 99.4 2.5E-10 5.5E-15 98.0 22.0 276 4-293 452-749 (1018)
55 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.9E-14 89.5 23.8 239 39-287 199-477 (508)
56 KOG1840 Kinesin light chain [C 99.3 1.9E-09 4E-14 89.5 23.5 238 6-253 201-478 (508)
57 KOG0547 Translocase of outer m 99.3 3.3E-09 7.1E-14 84.9 23.4 151 97-252 339-489 (606)
58 KOG2076 RNA polymerase III tra 99.3 2E-08 4.3E-13 86.1 29.2 272 3-287 172-510 (895)
59 PRK11189 lipoprotein NlpI; Pro 99.3 3.8E-09 8.3E-14 83.6 23.9 220 62-291 39-267 (296)
60 KOG1173 Anaphase-promoting com 99.3 5.9E-09 1.3E-13 84.9 24.3 264 6-286 246-515 (611)
61 PF12569 NARP1: NMDA receptor- 99.3 1.2E-08 2.7E-13 85.5 27.0 165 121-288 145-333 (517)
62 PRK11189 lipoprotein NlpI; Pro 99.3 1.2E-08 2.6E-13 80.7 25.2 227 18-265 40-275 (296)
63 KOG2003 TPR repeat-containing 99.3 5E-09 1.1E-13 83.4 21.8 220 62-289 469-689 (840)
64 KOG0495 HAT repeat protein [RN 99.3 6.9E-08 1.5E-12 80.3 28.6 264 5-287 517-780 (913)
65 COG3063 PilF Tfp pilus assembl 99.3 2.9E-08 6.2E-13 72.1 22.8 207 41-264 37-244 (250)
66 PF12569 NARP1: NMDA receptor- 99.3 3.2E-08 6.9E-13 83.1 26.8 259 11-291 11-293 (517)
67 KOG0495 HAT repeat protein [RN 99.2 1.1E-07 2.4E-12 79.2 28.8 225 62-293 631-884 (913)
68 KOG2002 TPR-containing nuclear 99.2 7.6E-08 1.6E-12 83.3 28.4 223 62-289 249-481 (1018)
69 KOG1173 Anaphase-promoting com 99.2 1.7E-08 3.7E-13 82.2 22.9 254 3-273 277-535 (611)
70 KOG0547 Translocase of outer m 99.2 1.2E-08 2.6E-13 81.8 21.5 225 13-253 335-565 (606)
71 KOG1915 Cell cycle control pro 99.2 5.1E-07 1.1E-11 72.6 29.5 281 2-290 172-537 (677)
72 PF04733 Coatomer_E: Coatomer 99.2 1.5E-09 3.3E-14 84.7 14.8 251 12-289 9-265 (290)
73 KOG1174 Anaphase-promoting com 99.2 1.1E-07 2.4E-12 75.0 24.0 262 3-288 231-499 (564)
74 cd05804 StaR_like StaR_like; a 99.1 9.9E-07 2.2E-11 72.2 29.8 273 4-291 6-295 (355)
75 KOG1915 Cell cycle control pro 99.1 1.9E-06 4.1E-11 69.4 29.1 220 62-290 154-467 (677)
76 cd05804 StaR_like StaR_like; a 99.1 7.7E-07 1.7E-11 72.9 28.0 270 11-290 50-337 (355)
77 PLN02789 farnesyltranstransfer 99.1 1.2E-06 2.6E-11 69.6 26.7 214 6-237 39-267 (320)
78 KOG1070 rRNA processing protei 99.1 5.7E-07 1.2E-11 80.9 26.9 234 38-286 1457-1697(1710)
79 PF04733 Coatomer_E: Coatomer 99.0 3.4E-08 7.3E-13 77.3 15.6 221 8-254 39-265 (290)
80 KOG1125 TPR repeat-containing 99.0 2.1E-07 4.6E-12 76.3 20.2 253 12-282 293-564 (579)
81 KOG1128 Uncharacterized conser 99.0 9.6E-08 2.1E-12 80.3 18.4 207 62-290 411-617 (777)
82 PRK10370 formate-dependent nit 99.0 7E-07 1.5E-11 66.1 20.4 156 91-263 23-181 (198)
83 PLN02789 farnesyltranstransfer 98.9 3.4E-06 7.3E-11 67.1 24.5 218 62-286 50-299 (320)
84 TIGR03302 OM_YfiO outer membra 98.9 4.6E-07 1E-11 69.6 18.8 188 82-289 31-232 (235)
85 PF12854 PPR_1: PPR repeat 98.9 2.7E-09 5.9E-14 53.9 3.8 31 115-145 3-33 (34)
86 KOG1128 Uncharacterized conser 98.9 3.3E-07 7.1E-12 77.2 17.9 214 9-254 403-616 (777)
87 KOG1070 rRNA processing protei 98.9 3.6E-06 7.8E-11 76.1 25.1 231 3-248 1457-1694(1710)
88 TIGR03302 OM_YfiO outer membra 98.9 1.2E-06 2.5E-11 67.3 19.8 172 62-254 46-232 (235)
89 PF12854 PPR_1: PPR repeat 98.9 3.8E-09 8.3E-14 53.4 4.0 32 220-251 2-33 (34)
90 COG5010 TadD Flp pilus assembl 98.9 2.1E-06 4.5E-11 63.9 19.2 155 90-249 72-226 (257)
91 KOG2047 mRNA splicing factor [ 98.9 1.3E-05 2.8E-10 67.1 25.5 276 5-286 249-612 (835)
92 PRK15179 Vi polysaccharide bio 98.8 6.4E-06 1.4E-10 72.2 24.8 133 118-254 85-217 (694)
93 PRK14720 transcript cleavage f 98.8 3.3E-06 7.2E-11 74.9 22.0 212 3-236 30-268 (906)
94 PRK10370 formate-dependent nit 98.8 3.1E-06 6.8E-11 62.7 19.0 118 64-184 54-174 (198)
95 COG5010 TadD Flp pilus assembl 98.8 7E-06 1.5E-10 61.2 20.3 162 118-285 66-227 (257)
96 KOG1125 TPR repeat-containing 98.8 1E-06 2.2E-11 72.5 17.1 218 62-286 298-524 (579)
97 KOG3081 Vesicle coat complex C 98.8 2.1E-05 4.5E-10 58.9 22.0 249 11-287 15-269 (299)
98 PRK15359 type III secretion sy 98.8 1.3E-06 2.8E-11 61.2 15.3 96 87-184 27-122 (144)
99 PRK15359 type III secretion sy 98.8 1.9E-06 4.2E-11 60.4 16.1 95 157-254 27-121 (144)
100 PRK15179 Vi polysaccharide bio 98.7 1.9E-05 4.1E-10 69.3 24.6 148 80-232 82-229 (694)
101 KOG1174 Anaphase-promoting com 98.7 1.2E-05 2.6E-10 63.8 21.0 169 80-253 228-396 (564)
102 KOG4340 Uncharacterized conser 98.7 1.5E-06 3.2E-11 66.0 14.2 206 83-298 9-216 (459)
103 KOG2047 mRNA splicing factor [ 98.7 5.5E-05 1.2E-09 63.6 23.9 110 191-300 388-517 (835)
104 PRK04841 transcriptional regul 98.7 9.8E-05 2.1E-09 68.4 28.5 270 11-290 459-761 (903)
105 KOG4162 Predicted calmodulin-b 98.7 0.00018 4E-09 61.7 30.7 123 164-290 660-784 (799)
106 PF13812 PPR_3: Pentatricopept 98.7 5.1E-08 1.1E-12 49.7 4.0 34 4-37 1-34 (34)
107 KOG4340 Uncharacterized conser 98.7 4.9E-05 1.1E-09 58.0 21.1 261 7-285 13-335 (459)
108 KOG3060 Uncharacterized conser 98.6 6.5E-05 1.4E-09 55.9 21.2 188 62-254 25-220 (289)
109 KOG3060 Uncharacterized conser 98.6 7E-05 1.5E-09 55.7 21.9 189 17-220 25-221 (289)
110 TIGR02552 LcrH_SycD type III s 98.6 4E-06 8.6E-11 58.3 14.5 97 155-254 18-114 (135)
111 COG4783 Putative Zn-dependent 98.6 6E-05 1.3E-09 61.3 22.5 139 93-254 315-454 (484)
112 TIGR00756 PPR pentatricopeptid 98.6 5.6E-08 1.2E-12 49.9 3.7 35 5-39 1-35 (35)
113 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.2E-06 9.2E-11 68.0 15.2 121 124-251 174-294 (395)
114 TIGR02552 LcrH_SycD type III s 98.6 5.1E-06 1.1E-10 57.7 13.8 93 123-218 21-113 (135)
115 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.9E-06 1.3E-10 67.2 15.4 127 85-218 170-296 (395)
116 KOG1914 mRNA cleavage and poly 98.6 0.00028 6E-09 58.3 26.2 64 3-78 19-82 (656)
117 KOG3785 Uncharacterized conser 98.6 0.00011 2.3E-09 57.6 21.1 94 195-292 398-493 (557)
118 TIGR00756 PPR pentatricopeptid 98.5 2.4E-07 5.2E-12 47.5 4.3 33 227-259 2-34 (35)
119 KOG1156 N-terminal acetyltrans 98.5 0.00016 3.5E-09 60.8 22.6 242 6-266 10-258 (700)
120 PRK14720 transcript cleavage f 98.5 5.5E-05 1.2E-09 67.5 21.2 219 33-271 24-268 (906)
121 PF10037 MRP-S27: Mitochondria 98.5 4E-06 8.6E-11 68.5 13.1 132 26-167 50-186 (429)
122 PF09976 TPR_21: Tetratricopep 98.5 2.3E-05 4.9E-10 55.2 15.2 117 96-215 23-143 (145)
123 KOG2376 Signal recognition par 98.5 0.00042 9.1E-09 57.8 23.9 121 11-148 19-139 (652)
124 PF08579 RPM2: Mitochondrial r 98.5 1.3E-05 2.8E-10 51.7 11.9 87 8-96 29-116 (120)
125 KOG1156 N-terminal acetyltrans 98.5 0.00062 1.3E-08 57.5 29.2 94 195-291 376-470 (700)
126 KOG3785 Uncharacterized conser 98.5 9.3E-05 2E-09 57.9 18.6 221 10-254 291-514 (557)
127 PF13812 PPR_3: Pentatricopept 98.5 3.9E-07 8.4E-12 46.3 4.1 33 226-258 2-34 (34)
128 PF10037 MRP-S27: Mitochondria 98.5 5.8E-06 1.3E-10 67.5 12.8 125 149-273 61-186 (429)
129 KOG4162 Predicted calmodulin-b 98.4 0.00053 1.1E-08 59.0 24.1 231 10-254 484-783 (799)
130 COG4783 Putative Zn-dependent 98.4 0.00057 1.2E-08 55.8 25.1 186 62-254 250-437 (484)
131 KOG3081 Vesicle coat complex C 98.4 4.9E-05 1.1E-09 56.9 15.8 174 69-254 93-271 (299)
132 PF09976 TPR_21: Tetratricopep 98.4 3.3E-05 7.2E-10 54.3 14.4 115 167-285 24-143 (145)
133 PRK04841 transcriptional regul 98.4 0.0011 2.3E-08 61.7 27.5 270 10-289 415-720 (903)
134 KOG2053 Mitochondrial inherita 98.4 0.0012 2.6E-08 57.9 24.9 227 14-255 19-256 (932)
135 PF08579 RPM2: Mitochondrial r 98.3 1.5E-05 3.3E-10 51.4 10.0 80 87-166 28-116 (120)
136 KOG1127 TPR repeat-containing 98.3 0.00074 1.6E-08 59.9 22.9 218 62-286 471-697 (1238)
137 PF01535 PPR: PPR repeat; Int 98.3 7.4E-07 1.6E-11 44.2 3.1 31 5-35 1-31 (31)
138 PRK10866 outer membrane biogen 98.3 0.00077 1.7E-08 51.7 20.1 184 84-288 32-240 (243)
139 KOG0985 Vesicle coat protein c 98.3 0.00067 1.5E-08 60.4 21.6 175 84-285 1104-1304(1666)
140 KOG3617 WD40 and TPR repeat-co 98.2 0.00043 9.4E-09 60.2 19.4 210 3-252 756-994 (1416)
141 KOG0548 Molecular co-chaperone 98.2 0.0013 2.9E-08 54.3 21.2 237 7-271 227-470 (539)
142 KOG2053 Mitochondrial inherita 98.2 0.0031 6.7E-08 55.5 24.6 221 62-290 22-256 (932)
143 KOG0624 dsRNA-activated protei 98.2 0.0015 3.2E-08 51.2 24.9 222 62-290 119-371 (504)
144 cd00189 TPR Tetratricopeptide 98.2 5.6E-05 1.2E-09 48.4 10.7 23 194-216 38-60 (100)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00014 3E-09 49.1 12.9 97 87-183 5-105 (119)
146 PF01535 PPR: PPR repeat; Int 98.2 3.8E-06 8.1E-11 41.5 3.7 29 227-255 2-30 (31)
147 cd00189 TPR Tetratricopeptide 98.2 6.9E-05 1.5E-09 47.9 10.9 93 123-218 4-96 (100)
148 PF06239 ECSIT: Evolutionarily 98.1 8.9E-05 1.9E-09 54.1 11.7 96 3-99 46-153 (228)
149 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.3E-09 57.0 14.2 129 121-253 3-135 (280)
150 KOG3617 WD40 and TPR repeat-co 98.1 0.00058 1.2E-08 59.5 18.2 237 14-287 738-994 (1416)
151 KOG0985 Vesicle coat protein c 98.1 0.00091 2E-08 59.6 19.5 190 62-273 1117-1326(1666)
152 KOG3616 Selective LIM binding 98.1 0.00075 1.6E-08 58.2 18.6 109 91-213 739-847 (1636)
153 PF05843 Suf: Suppressor of fo 98.1 7.2E-05 1.6E-09 58.8 12.1 131 155-289 2-136 (280)
154 PF06239 ECSIT: Evolutionarily 98.1 0.00013 2.9E-09 53.2 12.1 93 36-133 44-152 (228)
155 KOG3616 Selective LIM binding 98.1 0.00049 1.1E-08 59.2 17.1 138 127-287 740-877 (1636)
156 KOG0624 dsRNA-activated protei 98.1 0.0026 5.6E-08 49.9 20.5 235 12-254 114-370 (504)
157 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00027 6E-09 47.6 13.0 98 122-219 5-105 (119)
158 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.7E-10 50.5 5.7 20 196-215 31-50 (84)
159 PRK02603 photosystem I assembl 98.0 0.00065 1.4E-08 49.3 14.6 62 86-147 37-100 (172)
160 KOG1914 mRNA cleavage and poly 98.0 0.0027 5.8E-08 52.8 19.0 187 65-254 309-501 (656)
161 PLN03088 SGT1, suppressor of 98.0 0.00032 7E-09 57.2 14.1 86 165-253 13-98 (356)
162 PLN03088 SGT1, suppressor of 98.0 0.00035 7.5E-09 57.0 14.2 88 94-183 12-99 (356)
163 PRK15363 pathogenicity island 98.0 0.00076 1.6E-08 47.0 13.5 90 161-253 42-131 (157)
164 PF12895 Apc3: Anaphase-promot 98.0 2.6E-05 5.6E-10 49.1 5.9 81 203-285 2-83 (84)
165 KOG0548 Molecular co-chaperone 98.0 0.0033 7.1E-08 52.1 19.0 200 4-220 257-456 (539)
166 PRK10153 DNA-binding transcrip 98.0 0.0023 4.9E-08 54.8 19.0 142 34-184 332-483 (517)
167 PRK15363 pathogenicity island 98.0 0.0004 8.6E-09 48.4 11.8 93 124-219 40-132 (157)
168 CHL00033 ycf3 photosystem I as 98.0 0.00029 6.3E-09 50.9 11.7 64 120-183 36-101 (168)
169 PRK02603 photosystem I assembl 97.9 0.00087 1.9E-08 48.7 13.8 117 118-240 34-166 (172)
170 PF14938 SNAP: Soluble NSF att 97.9 0.0017 3.7E-08 51.3 15.9 197 89-286 40-263 (282)
171 PRK10153 DNA-binding transcrip 97.9 0.0044 9.6E-08 53.1 19.2 146 114-264 332-490 (517)
172 PF14938 SNAP: Soluble NSF att 97.9 0.0024 5.2E-08 50.5 16.4 126 125-251 120-263 (282)
173 KOG1127 TPR repeat-containing 97.9 0.013 2.8E-07 52.6 21.6 180 100-287 474-657 (1238)
174 PF13525 YfiO: Outer membrane 97.9 0.0025 5.4E-08 47.6 15.4 171 89-281 10-199 (203)
175 COG4700 Uncharacterized protei 97.8 0.0049 1.1E-07 44.1 18.0 136 115-252 85-220 (251)
176 PF12688 TPR_5: Tetratrico pep 97.8 0.0033 7.1E-08 42.2 13.7 56 127-182 9-66 (120)
177 COG4235 Cytochrome c biogenesi 97.8 0.0036 7.8E-08 48.3 15.4 121 143-269 146-269 (287)
178 CHL00033 ycf3 photosystem I as 97.8 0.001 2.2E-08 48.1 11.8 65 84-148 35-101 (168)
179 KOG2796 Uncharacterized conser 97.8 0.0095 2.1E-07 45.1 16.5 130 88-219 181-315 (366)
180 KOG0553 TPR repeat-containing 97.7 0.00065 1.4E-08 52.1 10.6 102 127-233 89-190 (304)
181 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.7E-09 42.7 6.4 50 133-183 5-54 (68)
182 PRK10866 outer membrane biogen 97.7 0.014 3.1E-07 44.8 19.1 170 62-252 45-239 (243)
183 KOG2376 Signal recognition par 97.7 0.026 5.6E-07 47.7 23.6 163 120-287 340-518 (652)
184 PF14559 TPR_19: Tetratricopep 97.7 0.00026 5.7E-09 42.3 6.4 52 202-254 3-54 (68)
185 KOG2041 WD40 repeat protein [G 97.6 0.0083 1.8E-07 51.7 16.6 214 2-251 690-904 (1189)
186 PF13432 TPR_16: Tetratricopep 97.6 0.00058 1.3E-08 40.4 7.5 55 198-253 5-59 (65)
187 PF03704 BTAD: Bacterial trans 97.6 0.004 8.8E-08 43.8 12.7 71 86-157 64-139 (146)
188 KOG0553 TPR repeat-containing 97.6 0.0016 3.5E-08 50.0 10.9 98 93-195 90-187 (304)
189 PF12688 TPR_5: Tetratrico pep 97.6 0.0081 1.8E-07 40.3 12.8 93 90-182 7-103 (120)
190 COG4235 Cytochrome c biogenesi 97.6 0.01 2.3E-07 45.8 14.8 113 116-233 153-268 (287)
191 PF04840 Vps16_C: Vps16, C-ter 97.6 0.028 6.1E-07 45.0 24.1 107 155-282 178-284 (319)
192 PF13414 TPR_11: TPR repeat; P 97.6 0.00058 1.3E-08 41.0 6.8 63 84-147 3-66 (69)
193 PF13432 TPR_16: Tetratricopep 97.5 0.00066 1.4E-08 40.2 6.8 54 163-218 6-59 (65)
194 PF13414 TPR_11: TPR repeat; P 97.5 0.00078 1.7E-08 40.4 7.1 60 192-252 5-65 (69)
195 KOG1538 Uncharacterized conser 97.5 0.033 7.1E-07 47.8 17.8 251 7-290 559-847 (1081)
196 KOG2796 Uncharacterized conser 97.5 0.028 6.1E-07 42.7 15.7 131 62-196 190-325 (366)
197 PRK10803 tol-pal system protei 97.4 0.0041 8.9E-08 48.2 11.7 97 155-254 144-246 (263)
198 PF03704 BTAD: Bacterial trans 97.4 0.0015 3.3E-08 45.9 8.7 71 192-263 64-139 (146)
199 PF12921 ATP13: Mitochondrial 97.4 0.0046 9.9E-08 42.0 10.4 50 220-269 47-97 (126)
200 PF13525 YfiO: Outer membrane 97.4 0.031 6.7E-07 41.8 18.6 180 9-210 10-198 (203)
201 PRK10803 tol-pal system protei 97.4 0.0054 1.2E-07 47.6 11.6 101 190-290 143-247 (263)
202 PF13281 DUF4071: Domain of un 97.3 0.059 1.3E-06 43.8 20.7 167 85-254 142-334 (374)
203 PRK15331 chaperone protein Sic 97.3 0.031 6.8E-07 39.4 14.0 88 163-253 46-133 (165)
204 PF12921 ATP13: Mitochondrial 97.3 0.0071 1.5E-07 41.0 9.9 49 187-235 49-98 (126)
205 PF13371 TPR_9: Tetratricopept 97.2 0.004 8.6E-08 37.7 7.6 56 198-254 3-58 (73)
206 PF13424 TPR_12: Tetratricopep 97.2 0.0024 5.3E-08 39.3 6.3 60 227-286 7-72 (78)
207 PF13371 TPR_9: Tetratricopept 97.1 0.0061 1.3E-07 36.9 7.4 54 164-219 5-58 (73)
208 PRK15331 chaperone protein Sic 97.1 0.057 1.2E-06 38.1 13.3 87 129-218 47-133 (165)
209 PF13424 TPR_12: Tetratricopep 96.9 0.0054 1.2E-07 37.7 6.4 63 191-253 6-74 (78)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.027 5.9E-07 46.5 11.1 63 189-253 74-140 (453)
211 PF09205 DUF1955: Domain of un 96.8 0.077 1.7E-06 35.8 13.3 66 225-291 86-151 (161)
212 COG4700 Uncharacterized protei 96.8 0.11 2.4E-06 37.5 18.6 133 81-216 86-219 (251)
213 PF13170 DUF4003: Protein of u 96.8 0.18 3.9E-06 40.0 16.0 138 20-163 78-226 (297)
214 PF09205 DUF1955: Domain of un 96.8 0.08 1.7E-06 35.7 13.1 137 62-221 15-151 (161)
215 KOG0543 FKBP-type peptidyl-pro 96.8 0.046 1E-06 44.2 11.9 124 127-253 216-354 (397)
216 PF10300 DUF3808: Protein of u 96.8 0.21 4.5E-06 42.7 16.5 160 126-289 195-376 (468)
217 KOG1130 Predicted G-alpha GTPa 96.8 0.051 1.1E-06 44.1 11.8 270 12-292 25-347 (639)
218 KOG1538 Uncharacterized conser 96.7 0.34 7.3E-06 42.0 18.5 222 5-254 599-846 (1081)
219 KOG3941 Intermediate in Toll s 96.7 0.028 6.1E-07 43.2 9.6 109 3-112 66-187 (406)
220 PF04053 Coatomer_WDAD: Coatom 96.7 0.17 3.7E-06 42.7 15.1 155 94-285 271-427 (443)
221 KOG3941 Intermediate in Toll s 96.6 0.047 1E-06 42.0 10.3 107 36-147 64-187 (406)
222 PF07079 DUF1347: Protein of u 96.5 0.41 8.8E-06 39.7 25.7 122 164-289 389-524 (549)
223 PF04840 Vps16_C: Vps16, C-ter 96.4 0.36 7.7E-06 38.9 21.2 128 119-273 177-304 (319)
224 COG3898 Uncharacterized membra 96.3 0.44 9.5E-06 38.7 25.2 215 62-287 133-390 (531)
225 smart00299 CLH Clathrin heavy 96.3 0.2 4.4E-06 34.8 14.5 84 89-180 12-95 (140)
226 PF13512 TPR_18: Tetratricopep 96.2 0.22 4.8E-06 34.4 10.9 77 90-166 16-94 (142)
227 PF10300 DUF3808: Protein of u 96.2 0.49 1.1E-05 40.5 15.5 167 7-182 191-375 (468)
228 KOG2610 Uncharacterized conser 96.2 0.3 6.4E-06 38.8 12.7 154 95-252 114-274 (491)
229 PF07035 Mic1: Colon cancer-as 96.2 0.29 6.3E-06 35.0 14.3 136 140-290 15-150 (167)
230 COG4105 ComL DNA uptake lipopr 96.2 0.4 8.7E-06 36.6 18.7 173 93-288 43-232 (254)
231 KOG2280 Vacuolar assembly/sort 96.2 0.86 1.9E-05 40.3 19.3 115 151-285 681-795 (829)
232 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.63 1.4E-05 38.6 25.3 92 190-284 397-490 (660)
233 PF08631 SPO22: Meiosis protei 96.1 0.52 1.1E-05 37.2 22.5 220 62-286 6-272 (278)
234 COG1729 Uncharacterized protei 96.1 0.2 4.4E-06 38.5 11.0 62 193-254 181-244 (262)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.46 1E-05 39.6 13.8 66 118-183 74-141 (453)
236 smart00299 CLH Clathrin heavy 96.0 0.31 6.7E-06 33.9 14.5 127 122-272 10-137 (140)
237 KOG2041 WD40 repeat protein [G 96.0 1 2.2E-05 39.7 17.5 39 231-269 1027-1066(1189)
238 KOG0543 FKBP-type peptidyl-pro 96.0 0.4 8.7E-06 39.0 12.8 125 92-219 216-355 (397)
239 COG1729 Uncharacterized protei 95.9 0.21 4.5E-06 38.4 10.7 98 121-219 144-244 (262)
240 COG3118 Thioredoxin domain-con 95.9 0.59 1.3E-05 36.5 16.9 51 95-146 145-195 (304)
241 COG3629 DnrI DNA-binding trans 95.9 0.17 3.7E-06 39.5 10.2 79 190-269 153-236 (280)
242 KOG2114 Vacuolar assembly/sort 95.9 0.72 1.6E-05 41.3 14.8 143 90-251 374-516 (933)
243 PF04053 Coatomer_WDAD: Coatom 95.9 0.14 3E-06 43.2 10.5 160 12-217 269-429 (443)
244 PF13281 DUF4071: Domain of un 95.8 0.83 1.8E-05 37.4 21.1 170 38-219 140-334 (374)
245 KOG2114 Vacuolar assembly/sort 95.7 1.5 3.3E-05 39.4 16.1 178 10-217 340-517 (933)
246 PF13428 TPR_14: Tetratricopep 95.7 0.06 1.3E-06 28.7 5.2 24 124-147 6-29 (44)
247 COG3898 Uncharacterized membra 95.5 1.1 2.3E-05 36.6 22.2 220 15-254 131-392 (531)
248 PF13428 TPR_14: Tetratricopep 95.5 0.057 1.2E-06 28.8 4.7 27 193-219 4-30 (44)
249 PRK11906 transcriptional regul 95.4 1.3 2.9E-05 37.1 18.1 137 40-183 252-401 (458)
250 KOG1130 Predicted G-alpha GTPa 95.4 0.093 2E-06 42.7 7.3 223 62-285 30-300 (639)
251 KOG1920 IkappaB kinase complex 95.3 2.6 5.7E-05 39.5 19.1 53 197-252 972-1026(1265)
252 KOG4570 Uncharacterized conser 95.0 0.28 6.1E-06 38.5 8.7 105 78-184 58-165 (418)
253 PF04184 ST7: ST7 protein; In 95.0 2 4.3E-05 36.4 16.5 73 194-267 263-338 (539)
254 PF07035 Mic1: Colon cancer-as 95.0 0.92 2E-05 32.5 15.0 135 69-218 14-148 (167)
255 PRK11906 transcriptional regul 94.9 1.9 4.2E-05 36.2 18.1 171 8-182 257-435 (458)
256 COG3118 Thioredoxin domain-con 94.9 1.4 3E-05 34.5 16.6 145 125-274 140-286 (304)
257 KOG4555 TPR repeat-containing 94.9 0.48 1E-05 32.1 8.4 91 163-255 52-145 (175)
258 PF04184 ST7: ST7 protein; In 94.9 2.1 4.5E-05 36.3 18.5 59 159-217 264-322 (539)
259 PF13176 TPR_7: Tetratricopept 94.9 0.077 1.7E-06 26.9 3.8 26 6-31 1-26 (36)
260 COG0457 NrfG FOG: TPR repeat [ 94.9 1.2 2.6E-05 33.4 24.5 224 17-254 36-265 (291)
261 COG4649 Uncharacterized protei 94.8 1 2.2E-05 32.3 13.4 140 118-259 58-201 (221)
262 PF10602 RPN7: 26S proteasome 94.8 0.91 2E-05 33.1 10.6 59 122-180 39-99 (177)
263 PF07079 DUF1347: Protein of u 94.7 2.1 4.6E-05 35.7 25.1 261 14-290 16-328 (549)
264 KOG0550 Molecular chaperone (D 94.7 2 4.4E-05 35.4 18.5 83 202-288 261-349 (486)
265 PF13176 TPR_7: Tetratricopept 94.7 0.1 2.2E-06 26.4 4.0 25 228-252 2-26 (36)
266 KOG1941 Acetylcholine receptor 94.6 1.9 4.2E-05 34.9 14.6 229 14-252 16-273 (518)
267 PF08631 SPO22: Meiosis protei 94.5 1.9 4.2E-05 34.1 26.0 234 15-252 4-273 (278)
268 COG4105 ComL DNA uptake lipopr 94.3 1.9 4.1E-05 33.1 19.9 69 62-130 47-117 (254)
269 KOG4555 TPR repeat-containing 94.2 1.2 2.5E-05 30.3 11.2 91 128-220 52-145 (175)
270 KOG1920 IkappaB kinase complex 94.1 5.3 0.00011 37.7 16.2 117 116-251 932-1052(1265)
271 PF00637 Clathrin: Region in C 94.0 0.044 9.6E-07 38.3 2.3 84 90-180 13-96 (143)
272 PF13512 TPR_18: Tetratricopep 93.9 1.5 3.2E-05 30.4 12.5 54 166-219 22-76 (142)
273 KOG1585 Protein required for f 93.7 2.4 5.2E-05 32.4 18.9 205 6-248 33-250 (308)
274 PF10602 RPN7: 26S proteasome 93.7 2 4.3E-05 31.3 12.9 98 85-182 37-141 (177)
275 KOG2610 Uncharacterized conser 93.7 3.1 6.7E-05 33.4 14.2 151 17-179 116-272 (491)
276 cd00923 Cyt_c_Oxidase_Va Cytoc 93.7 0.65 1.4E-05 29.5 6.6 40 142-181 30-69 (103)
277 KOG0550 Molecular chaperone (D 93.5 3.8 8.2E-05 33.9 18.4 153 62-219 182-350 (486)
278 COG3629 DnrI DNA-binding trans 93.5 3 6.6E-05 32.7 15.9 76 87-163 156-236 (280)
279 PF11207 DUF2989: Protein of u 93.3 1.2 2.7E-05 32.8 8.7 80 93-174 116-198 (203)
280 KOG1585 Protein required for f 93.2 3 6.5E-05 31.9 15.7 146 122-284 94-251 (308)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 0.98 2.1E-05 28.7 6.8 61 66-127 24-84 (103)
282 COG5107 RNA14 Pre-mRNA 3'-end 93.1 4.6 0.0001 33.9 21.2 143 118-267 396-542 (660)
283 PF13431 TPR_17: Tetratricopep 93.1 0.14 3.1E-06 25.5 2.7 23 187-209 10-32 (34)
284 PF09613 HrpB1_HrpK: Bacterial 93.0 2.3 5E-05 30.2 11.0 119 155-281 8-130 (160)
285 PF00515 TPR_1: Tetratricopept 93.0 0.38 8.3E-06 23.7 4.3 30 4-33 1-30 (34)
286 PF00637 Clathrin: Region in C 92.9 0.11 2.5E-06 36.2 3.0 86 124-217 12-97 (143)
287 PF13170 DUF4003: Protein of u 92.9 4.1 8.9E-05 32.6 21.2 153 100-254 78-250 (297)
288 PF02284 COX5A: Cytochrome c o 92.8 1.6 3.4E-05 28.2 7.5 59 208-267 28-86 (108)
289 PF13374 TPR_10: Tetratricopep 92.8 0.34 7.3E-06 25.1 4.1 30 4-33 2-31 (42)
290 PF09613 HrpB1_HrpK: Bacterial 92.5 2.8 6E-05 29.8 12.3 51 131-183 22-73 (160)
291 KOG1550 Extracellular protein 92.5 7.2 0.00016 34.4 17.9 184 64-256 227-428 (552)
292 KOG4570 Uncharacterized conser 92.5 1.8 3.9E-05 34.3 8.9 101 114-217 59-162 (418)
293 COG0457 NrfG FOG: TPR repeat [ 92.2 3.8 8.3E-05 30.5 29.3 225 63-290 37-266 (291)
294 KOG1550 Extracellular protein 92.2 7.9 0.00017 34.2 16.9 178 100-290 228-427 (552)
295 PF07719 TPR_2: Tetratricopept 92.0 0.6 1.3E-05 22.8 4.3 29 5-33 2-30 (34)
296 PF13431 TPR_17: Tetratricopep 91.9 0.25 5.4E-06 24.6 2.7 20 119-138 13-32 (34)
297 PF13374 TPR_10: Tetratricopep 91.9 0.56 1.2E-05 24.2 4.3 28 226-253 3-30 (42)
298 PF02284 COX5A: Cytochrome c o 91.7 2.5 5.3E-05 27.3 9.1 60 67-127 28-87 (108)
299 KOG1258 mRNA processing protei 91.6 8.5 0.00018 33.5 25.4 85 62-147 92-179 (577)
300 KOG4234 TPR repeat-containing 91.4 4.6 9.9E-05 29.9 10.0 88 164-254 105-197 (271)
301 PF00515 TPR_1: Tetratricopept 91.4 0.73 1.6E-05 22.6 4.2 27 121-147 3-29 (34)
302 PF13929 mRNA_stabil: mRNA sta 90.9 6.7 0.00015 30.9 15.0 115 135-249 144-262 (292)
303 PRK15180 Vi polysaccharide bio 90.6 9.8 0.00021 32.4 12.5 95 88-184 327-421 (831)
304 KOG0276 Vesicle coat complex C 90.4 7.8 0.00017 33.9 11.3 102 94-217 647-748 (794)
305 PF13174 TPR_6: Tetratricopept 90.3 0.71 1.5E-05 22.3 3.5 24 231-254 6-29 (33)
306 PF02259 FAT: FAT domain; Int 90.1 9.3 0.0002 31.3 16.9 65 224-288 145-212 (352)
307 PRK15180 Vi polysaccharide bio 89.8 10 0.00022 32.2 11.3 125 165-294 300-425 (831)
308 PF07719 TPR_2: Tetratricopept 89.8 1.3 2.9E-05 21.5 4.3 27 227-253 3-29 (34)
309 TIGR02561 HrpB1_HrpK type III 89.1 6 0.00013 27.7 10.0 54 165-220 21-74 (153)
310 COG1747 Uncharacterized N-term 89.0 14 0.0003 31.8 23.3 181 37-235 64-249 (711)
311 PF13174 TPR_6: Tetratricopept 89.0 0.99 2.1E-05 21.7 3.4 27 7-33 3-29 (33)
312 COG4455 ImpE Protein of avirul 88.8 5.5 0.00012 30.0 8.2 77 156-234 3-81 (273)
313 KOG1464 COP9 signalosome, subu 88.7 9.9 0.00022 29.7 12.9 154 99-252 42-218 (440)
314 PF08424 NRDE-2: NRDE-2, neces 88.7 12 0.00025 30.5 16.7 137 117-256 17-185 (321)
315 COG5108 RPO41 Mitochondrial DN 88.5 5.4 0.00012 35.3 9.1 95 9-110 33-129 (1117)
316 COG2976 Uncharacterized protei 88.4 8.3 0.00018 28.4 13.8 133 119-255 54-189 (207)
317 PF07163 Pex26: Pex26 protein; 88.2 9.8 0.00021 29.8 9.5 91 87-177 86-181 (309)
318 COG1747 Uncharacterized N-term 88.2 16 0.00034 31.5 22.5 165 83-254 65-234 (711)
319 KOG1941 Acetylcholine receptor 88.1 13 0.00028 30.4 12.1 119 62-181 135-273 (518)
320 PF10345 Cohesin_load: Cohesin 88.1 19 0.00042 32.3 18.3 196 82-287 28-252 (608)
321 PF13181 TPR_8: Tetratricopept 88.1 1.9 4.1E-05 21.0 4.2 27 227-253 3-29 (34)
322 PF04097 Nic96: Nup93/Nic96; 88.0 10 0.00022 34.0 11.1 88 11-113 265-356 (613)
323 TIGR03504 FimV_Cterm FimV C-te 87.9 1.6 3.5E-05 23.2 3.9 22 232-253 6-27 (44)
324 KOG2396 HAT (Half-A-TPR) repea 87.9 16 0.00035 31.2 21.4 246 22-287 300-557 (568)
325 COG4455 ImpE Protein of avirul 87.8 5.7 0.00012 29.9 7.8 78 121-199 3-81 (273)
326 PF13181 TPR_8: Tetratricopept 87.7 1.9 4.2E-05 20.9 4.1 29 5-33 2-30 (34)
327 KOG0276 Vesicle coat complex C 87.6 14 0.00031 32.4 11.0 82 153-250 665-746 (794)
328 TIGR02561 HrpB1_HrpK type III 87.5 7.9 0.00017 27.1 11.2 52 131-184 22-74 (153)
329 TIGR03504 FimV_Cterm FimV C-te 87.4 1.8 3.8E-05 23.1 3.8 27 9-35 4-30 (44)
330 PF06552 TOM20_plant: Plant sp 87.3 9.4 0.0002 27.8 10.0 119 20-149 7-137 (186)
331 PF10579 Rapsyn_N: Rapsyn N-te 87.2 4.7 0.0001 24.7 5.9 47 237-283 18-66 (80)
332 PF11207 DUF2989: Protein of u 86.9 11 0.00023 28.1 13.7 79 130-210 118-198 (203)
333 COG4649 Uncharacterized protei 86.6 10 0.00022 27.5 14.1 135 83-219 58-196 (221)
334 PHA02875 ankyrin repeat protei 86.5 14 0.00031 31.1 10.9 68 72-143 18-89 (413)
335 PF07721 TPR_4: Tetratricopept 86.4 1.4 3.1E-05 20.2 2.8 18 125-142 7-24 (26)
336 PF02259 FAT: FAT domain; Int 85.9 18 0.00038 29.6 19.6 67 187-253 143-212 (352)
337 PRK09687 putative lyase; Provi 85.5 17 0.00036 28.9 27.9 185 83-287 67-261 (280)
338 COG4785 NlpI Lipoprotein NlpI, 85.4 14 0.0003 27.9 16.1 65 119-184 99-163 (297)
339 PF13929 mRNA_stabil: mRNA sta 85.0 17 0.00038 28.7 18.2 117 117-233 162-286 (292)
340 PF10345 Cohesin_load: Cohesin 84.4 31 0.00067 31.1 19.5 184 68-252 40-252 (608)
341 KOG4077 Cytochrome c oxidase, 84.0 9.8 0.00021 25.8 6.7 44 140-183 70-113 (149)
342 KOG4648 Uncharacterized conser 83.2 12 0.00026 30.4 8.1 50 164-215 107-156 (536)
343 PF07163 Pex26: Pex26 protein; 83.2 21 0.00045 28.2 9.4 90 123-213 87-181 (309)
344 PF13762 MNE1: Mitochondrial s 82.6 14 0.0003 25.9 9.5 84 192-275 41-130 (145)
345 PF11846 DUF3366: Domain of un 82.3 8.1 0.00018 28.6 6.9 33 222-254 141-173 (193)
346 COG3947 Response regulator con 81.6 25 0.00053 28.0 15.5 41 101-143 150-190 (361)
347 PF11848 DUF3368: Domain of un 81.4 6.7 0.00015 21.3 4.7 31 237-267 14-44 (48)
348 COG2976 Uncharacterized protei 80.9 20 0.00044 26.5 13.7 129 84-220 54-189 (207)
349 PF10579 Rapsyn_N: Rapsyn N-te 80.8 8.1 0.00018 23.7 5.0 46 166-211 18-64 (80)
350 KOG1258 mRNA processing protei 80.5 40 0.00086 29.6 18.7 185 38-239 296-489 (577)
351 PHA02875 ankyrin repeat protei 80.5 34 0.00074 28.9 13.3 212 11-260 6-230 (413)
352 smart00028 TPR Tetratricopepti 80.5 4.1 8.8E-05 18.6 3.4 29 5-33 2-30 (34)
353 KOG4077 Cytochrome c oxidase, 80.4 15 0.00033 24.9 7.2 44 210-253 69-112 (149)
354 PF06552 TOM20_plant: Plant sp 80.3 20 0.00044 26.2 10.0 101 7-115 31-138 (186)
355 KOG1464 COP9 signalosome, subu 80.2 26 0.00057 27.4 17.6 175 34-217 21-218 (440)
356 COG2909 MalT ATP-dependent tra 80.1 51 0.0011 30.6 21.8 224 62-285 428-684 (894)
357 PF14669 Asp_Glu_race_2: Putat 80.1 21 0.00046 26.3 11.5 69 78-146 2-78 (233)
358 KOG4648 Uncharacterized conser 80.0 20 0.00044 29.1 8.3 88 128-218 106-193 (536)
359 PF14689 SPOB_a: Sensor_kinase 79.4 7.6 0.00016 22.5 4.6 26 227-252 25-50 (62)
360 PF11848 DUF3368: Domain of un 78.9 8.4 0.00018 20.9 5.0 31 131-161 14-44 (48)
361 KOG2280 Vacuolar assembly/sort 78.7 52 0.0011 29.9 19.9 81 197-287 691-771 (829)
362 KOG4234 TPR repeat-containing 78.4 26 0.00056 26.2 9.5 91 127-219 103-197 (271)
363 KOG4507 Uncharacterized conser 78.1 24 0.00051 31.1 8.7 129 67-199 591-719 (886)
364 PF11846 DUF3366: Domain of un 77.9 15 0.00032 27.2 7.0 33 187-219 141-173 (193)
365 PF14689 SPOB_a: Sensor_kinase 77.8 6.8 0.00015 22.7 4.1 29 259-287 22-50 (62)
366 COG3947 Response regulator con 76.8 36 0.00079 27.1 14.9 71 191-262 280-355 (361)
367 PF11663 Toxin_YhaV: Toxin wit 76.5 4.3 9.2E-05 27.8 3.3 33 15-49 106-138 (140)
368 PF13762 MNE1: Mitochondrial s 76.4 24 0.00051 24.8 13.2 97 75-171 28-132 (145)
369 COG5159 RPN6 26S proteasome re 75.9 38 0.00082 26.9 11.1 129 125-254 9-154 (421)
370 PF08424 NRDE-2: NRDE-2, neces 75.8 42 0.0009 27.3 17.8 153 36-190 16-190 (321)
371 cd00280 TRFH Telomeric Repeat 74.6 31 0.00066 25.3 7.3 48 170-218 85-139 (200)
372 KOG2066 Vacuolar assembly/sort 73.8 73 0.0016 29.2 19.6 134 11-147 363-533 (846)
373 KOG2297 Predicted translation 73.8 45 0.00098 26.8 17.8 73 167-245 268-341 (412)
374 KOG2063 Vacuolar assembly/sort 73.2 84 0.0018 29.6 16.4 29 5-33 505-533 (877)
375 KOG2297 Predicted translation 72.8 48 0.001 26.6 16.7 19 261-279 322-340 (412)
376 PF11663 Toxin_YhaV: Toxin wit 72.4 3.4 7.5E-05 28.2 2.1 31 238-270 108-138 (140)
377 COG0735 Fur Fe2+/Zn2+ uptake r 72.3 31 0.00067 24.2 7.1 32 125-156 26-57 (145)
378 cd08819 CARD_MDA5_2 Caspase ac 72.2 21 0.00047 22.4 6.7 66 209-280 21-86 (88)
379 PRK10564 maltose regulon perip 71.6 10 0.00023 30.0 4.9 43 223-265 254-297 (303)
380 KOG3364 Membrane protein invol 71.2 31 0.00068 23.9 9.3 71 36-113 29-100 (149)
381 COG5108 RPO41 Mitochondrial DN 71.0 51 0.0011 29.7 9.1 91 159-252 33-130 (1117)
382 PF07575 Nucleopor_Nup85: Nup8 69.5 17 0.00038 32.2 6.5 136 118-269 404-539 (566)
383 PRK12798 chemotaxis protein; R 69.5 68 0.0015 27.0 20.1 191 97-292 125-327 (421)
384 PRK10564 maltose regulon perip 68.7 11 0.00025 29.8 4.5 41 82-122 254-295 (303)
385 KOG0991 Replication factor C, 68.5 53 0.0011 25.4 11.8 92 130-224 170-272 (333)
386 PF09454 Vps23_core: Vps23 cor 67.6 23 0.00049 20.8 6.3 49 2-51 6-54 (65)
387 PF09454 Vps23_core: Vps23 cor 66.9 24 0.00051 20.8 6.3 52 35-97 4-55 (65)
388 KOG0687 26S proteasome regulat 64.8 76 0.0016 25.8 14.3 18 99-116 37-54 (393)
389 PF07575 Nucleopor_Nup85: Nup8 64.3 35 0.00075 30.4 7.3 23 168-191 509-531 (566)
390 PF08314 Sec39: Secretory path 63.5 1.3E+02 0.0027 28.0 11.3 97 2-102 430-531 (715)
391 COG2909 MalT ATP-dependent tra 63.4 1.3E+02 0.0029 28.2 19.6 227 14-250 425-684 (894)
392 PRK11619 lytic murein transgly 63.0 1.2E+02 0.0026 27.6 22.6 119 167-288 254-374 (644)
393 COG0735 Fur Fe2+/Zn2+ uptake r 62.9 50 0.0011 23.2 8.0 64 70-134 7-70 (145)
394 PRK09857 putative transposase; 62.1 81 0.0018 25.3 9.0 66 193-259 209-274 (292)
395 PF11817 Foie-gras_1: Foie gra 61.7 73 0.0016 24.8 7.9 26 3-29 10-35 (247)
396 cd08819 CARD_MDA5_2 Caspase ac 61.2 39 0.00084 21.3 7.3 16 166-181 48-63 (88)
397 PF11817 Foie-gras_1: Foie gra 61.1 76 0.0017 24.7 8.4 57 124-180 183-244 (247)
398 COG2178 Predicted RNA-binding 61.1 66 0.0014 23.9 9.0 17 131-147 133-149 (204)
399 KOG4507 Uncharacterized conser 60.5 74 0.0016 28.3 8.0 88 131-220 619-706 (886)
400 PRK11639 zinc uptake transcrip 60.2 63 0.0014 23.4 7.3 20 135-154 41-60 (169)
401 KOG0890 Protein kinase of the 60.2 2.4E+02 0.0052 30.1 17.2 142 62-214 1396-1542(2382)
402 KOG4567 GTPase-activating prot 60.0 85 0.0018 25.3 7.7 56 175-236 264-319 (370)
403 PRK09462 fur ferric uptake reg 60.0 57 0.0012 22.9 7.2 35 134-168 32-66 (148)
404 PRK11639 zinc uptake transcrip 59.9 52 0.0011 23.8 6.4 47 195-241 30-76 (169)
405 PF09670 Cas_Cas02710: CRISPR- 59.8 1.1E+02 0.0023 25.8 9.3 58 12-78 139-198 (379)
406 TIGR02508 type_III_yscG type I 59.6 46 0.001 21.7 8.9 49 200-254 49-97 (115)
407 KOG2063 Vacuolar assembly/sort 59.3 1.6E+02 0.0035 27.9 16.5 186 87-273 507-745 (877)
408 KOG0686 COP9 signalosome, subu 58.8 1.1E+02 0.0024 25.8 15.5 175 85-267 151-351 (466)
409 KOG1308 Hsp70-interacting prot 58.6 19 0.0004 29.3 4.1 89 166-258 126-215 (377)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 57.4 59 0.0013 22.2 8.6 17 232-248 106-122 (126)
411 PF12862 Apc5: Anaphase-promot 57.1 48 0.001 21.0 6.9 15 166-180 53-67 (94)
412 PF14853 Fis1_TPR_C: Fis1 C-te 56.7 33 0.00072 19.1 5.3 37 10-48 7-43 (53)
413 PF10366 Vps39_1: Vacuolar sor 56.3 56 0.0012 21.6 7.2 27 227-253 41-67 (108)
414 cd07153 Fur_like Ferric uptake 56.0 50 0.0011 21.8 5.5 47 9-55 5-51 (116)
415 PF01475 FUR: Ferric uptake re 55.4 47 0.001 22.2 5.3 47 8-54 11-57 (120)
416 cd00280 TRFH Telomeric Repeat 53.4 90 0.0019 23.1 11.9 20 163-182 120-139 (200)
417 COG5187 RPN7 26S proteasome re 52.6 1.2E+02 0.0026 24.3 13.0 120 153-274 114-241 (412)
418 KOG0376 Serine-threonine phosp 52.2 57 0.0012 27.9 6.0 18 130-147 15-32 (476)
419 cd07153 Fur_like Ferric uptake 51.7 67 0.0015 21.2 5.6 37 97-133 13-49 (116)
420 KOG4642 Chaperone-dependent E3 51.4 1.1E+02 0.0025 23.7 10.5 84 128-216 19-104 (284)
421 PF12862 Apc5: Anaphase-promot 51.2 61 0.0013 20.5 6.1 22 196-217 47-68 (94)
422 KOG0376 Serine-threonine phosp 50.9 69 0.0015 27.5 6.3 107 91-203 11-118 (476)
423 KOG3677 RNA polymerase I-assoc 50.1 1.4E+02 0.0029 25.4 7.6 60 87-146 238-299 (525)
424 KOG4567 GTPase-activating prot 50.1 1.4E+02 0.003 24.2 8.0 58 139-202 263-320 (370)
425 PF12926 MOZART2: Mitotic-spin 49.9 63 0.0014 20.3 7.5 43 140-182 29-71 (88)
426 KOG2066 Vacuolar assembly/sort 49.7 2.2E+02 0.0047 26.5 13.2 144 62-218 369-533 (846)
427 PF01475 FUR: Ferric uptake re 49.4 64 0.0014 21.5 5.2 44 90-133 13-56 (120)
428 KOG1586 Protein required for f 49.1 1.2E+02 0.0027 23.5 16.8 28 195-222 159-186 (288)
429 PF11838 ERAP1_C: ERAP1-like C 49.0 1.4E+02 0.0031 24.1 19.2 191 91-285 45-262 (324)
430 KOG0687 26S proteasome regulat 48.9 1.5E+02 0.0032 24.3 14.5 118 64-183 83-210 (393)
431 PF07827 KNTase_C: KNTase C-te 48.6 90 0.002 21.7 6.0 107 26-146 5-118 (143)
432 PRK10941 hypothetical protein; 48.1 1.4E+02 0.003 23.7 10.4 77 158-236 185-262 (269)
433 COG4003 Uncharacterized protei 47.8 38 0.00082 20.9 3.3 27 9-35 36-62 (98)
434 smart00638 LPD_N Lipoprotein N 47.5 2.1E+02 0.0046 25.6 24.7 199 37-252 308-523 (574)
435 KOG2471 TPR repeat-containing 45.9 2.1E+02 0.0045 25.1 17.1 109 163-273 249-382 (696)
436 KOG2396 HAT (Half-A-TPR) repea 45.8 2.1E+02 0.0045 25.1 20.7 231 1-254 312-559 (568)
437 PF10155 DUF2363: Uncharacteri 45.7 97 0.0021 21.2 10.5 42 105-146 84-125 (126)
438 PRK09687 putative lyase; Provi 45.2 1.6E+02 0.0034 23.5 24.2 186 67-271 90-278 (280)
439 KOG1308 Hsp70-interacting prot 45.1 20 0.00044 29.1 2.4 95 130-227 125-219 (377)
440 PF03745 DUF309: Domain of unk 44.7 63 0.0014 18.8 5.8 15 167-181 12-26 (62)
441 PF11768 DUF3312: Protein of u 43.6 2.3E+02 0.0051 25.1 11.2 21 160-180 414-434 (545)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 42.9 1.1E+02 0.0023 20.9 9.5 44 172-215 81-124 (126)
443 smart00386 HAT HAT (Half-A-TPR 42.8 37 0.0008 15.6 4.1 13 135-147 3-15 (33)
444 PF02607 B12-binding_2: B12 bi 42.5 48 0.001 20.0 3.5 37 238-274 14-50 (79)
445 KOG1114 Tripeptidyl peptidase 42.5 3.2E+02 0.0069 26.3 16.7 81 170-252 1212-1293(1304)
446 KOG0890 Protein kinase of the 42.4 4.7E+02 0.01 28.2 20.7 65 225-292 1670-1734(2382)
447 PF09797 NatB_MDM20: N-acetylt 42.2 2E+02 0.0044 23.9 21.6 64 159-224 185-251 (365)
448 PF10366 Vps39_1: Vacuolar sor 41.7 1E+02 0.0022 20.3 8.4 26 122-147 42-67 (108)
449 PF09090 MIF4G_like_2: MIF4G l 41.6 1.7E+02 0.0037 22.9 9.0 53 2-54 9-65 (253)
450 PRK10941 hypothetical protein; 41.5 1.8E+02 0.0039 23.1 10.3 80 192-272 183-263 (269)
451 PF09670 Cas_Cas02710: CRISPR- 41.5 2.1E+02 0.0047 24.0 11.5 56 92-148 139-198 (379)
452 KOG3364 Membrane protein invol 41.5 1.2E+02 0.0026 21.2 8.9 68 116-183 29-100 (149)
453 COG5593 Nucleic-acid-binding p 40.7 1.8E+02 0.0039 25.6 7.3 75 2-84 82-156 (821)
454 PF02841 GBP_C: Guanylate-bind 40.5 1.9E+02 0.0042 23.2 7.5 67 75-144 20-87 (297)
455 PF09868 DUF2095: Uncharacteri 39.4 1.2E+02 0.0025 20.3 5.4 25 196-220 67-91 (128)
456 TIGR03581 EF_0839 conserved hy 39.1 1.3E+02 0.0028 22.9 5.5 35 135-169 137-178 (236)
457 COG0790 FOG: TPR repeat, SEL1 38.7 2E+02 0.0043 22.8 20.7 203 63-275 55-287 (292)
458 COG2405 Predicted nucleic acid 38.2 94 0.002 21.7 4.4 42 121-163 112-153 (157)
459 PF14561 TPR_20: Tetratricopep 37.8 1.1E+02 0.0023 19.4 8.5 30 189-218 21-50 (90)
460 KOG0686 COP9 signalosome, subu 37.6 2.6E+02 0.0056 23.8 14.8 164 41-218 152-332 (466)
461 cd02679 MIT_spastin MIT: domai 37.0 76 0.0016 19.6 3.5 44 238-288 21-67 (79)
462 PF12926 MOZART2: Mitotic-spin 36.9 1.1E+02 0.0024 19.3 8.1 41 211-251 29-69 (88)
463 COG3107 LppC Putative lipoprot 36.8 3E+02 0.0066 24.4 8.0 80 11-99 70-151 (604)
464 PRK07003 DNA polymerase III su 36.4 3.8E+02 0.0082 25.4 11.6 43 137-181 182-225 (830)
465 KOG2659 LisH motif-containing 36.2 2E+02 0.0043 22.1 9.0 98 116-216 23-129 (228)
466 PF09090 MIF4G_like_2: MIF4G l 35.9 2E+02 0.0043 22.5 6.6 110 151-261 8-128 (253)
467 PF02847 MA3: MA3 domain; Int 35.7 1.3E+02 0.0028 19.7 9.8 64 8-81 6-69 (113)
468 KOG0991 Replication factor C, 35.7 2.1E+02 0.0046 22.3 15.2 104 164-272 169-284 (333)
469 PF04097 Nic96: Nup93/Nic96; 35.5 3.5E+02 0.0075 24.7 19.1 44 9-53 116-159 (613)
470 PF00244 14-3-3: 14-3-3 protei 35.2 2.1E+02 0.0046 22.1 12.9 61 9-78 6-66 (236)
471 KOG2659 LisH motif-containing 35.2 2.1E+02 0.0045 22.0 9.5 101 150-250 22-128 (228)
472 PRK14956 DNA polymerase III su 34.9 3.2E+02 0.0068 24.0 11.6 32 148-181 196-227 (484)
473 PF04090 RNA_pol_I_TF: RNA pol 34.9 2E+02 0.0043 21.6 10.4 30 155-184 42-71 (199)
474 PRK11905 bifunctional proline 34.8 4.4E+02 0.0095 26.5 9.8 159 101-273 50-214 (1208)
475 PF07678 A2M_comp: A-macroglob 34.3 2.2E+02 0.0048 22.1 8.0 49 62-112 112-160 (246)
476 KOG3677 RNA polymerase I-assoc 33.8 3E+02 0.0066 23.5 8.2 24 10-33 241-264 (525)
477 PF14929 TAF1_subA: TAF RNA Po 33.8 3.5E+02 0.0076 24.2 16.4 135 133-273 323-468 (547)
478 COG2405 Predicted nucleic acid 33.6 1.1E+02 0.0025 21.3 4.2 33 95-127 120-152 (157)
479 PRK09462 fur ferric uptake reg 33.5 1.7E+02 0.0037 20.5 8.0 61 74-135 7-68 (148)
480 smart00804 TAP_C C-terminal do 33.2 40 0.00087 19.7 1.9 18 168-185 39-56 (63)
481 PF14669 Asp_Glu_race_2: Putat 32.8 2.1E+02 0.0046 21.4 12.9 25 190-214 181-205 (233)
482 COG4941 Predicted RNA polymera 32.6 2.9E+02 0.0062 22.9 10.1 119 62-183 269-394 (415)
483 PF07678 A2M_comp: A-macroglob 32.4 2.4E+02 0.0052 21.9 8.9 23 232-254 199-221 (246)
484 KOG0292 Vesicle coat complex C 31.7 4.7E+02 0.01 25.1 10.1 166 89-297 625-790 (1202)
485 KOG4642 Chaperone-dependent E3 31.6 2.5E+02 0.0055 21.9 11.6 116 16-145 22-143 (284)
486 PRK11905 bifunctional proline 31.6 5E+02 0.011 26.2 9.6 158 62-233 46-209 (1208)
487 PRK14951 DNA polymerase III su 31.5 4.1E+02 0.0089 24.3 10.2 86 171-259 186-284 (618)
488 KOG4279 Serine/threonine prote 31.2 4.5E+02 0.0097 24.7 11.1 177 70-254 184-395 (1226)
489 PF13934 ELYS: Nuclear pore co 31.1 2.4E+02 0.0053 21.6 16.5 104 122-237 79-184 (226)
490 KOG2471 TPR repeat-containing 30.7 2.2E+02 0.0047 24.9 6.2 105 94-201 250-380 (696)
491 PF12069 DUF3549: Protein of u 30.4 3.2E+02 0.0068 22.6 14.6 88 89-183 171-259 (340)
492 PF07064 RIC1: RIC1; InterPro 30.4 2.7E+02 0.0059 21.9 15.2 61 230-290 184-250 (258)
493 TIGR03581 EF_0839 conserved hy 30.3 2.5E+02 0.0054 21.4 6.0 62 226-287 164-235 (236)
494 PF07443 HARP: HepA-related pr 29.9 19 0.00042 20.3 0.2 34 18-51 6-39 (55)
495 PRK14958 DNA polymerase III su 29.8 4E+02 0.0086 23.6 12.0 20 239-258 259-278 (509)
496 COG5187 RPN7 26S proteasome re 29.7 3E+02 0.0066 22.2 18.3 118 79-199 110-236 (412)
497 KOG1839 Uncharacterized protei 29.6 5.9E+02 0.013 25.5 11.4 133 117-249 971-1123(1236)
498 KOG2422 Uncharacterized conser 29.6 4.2E+02 0.0091 23.8 19.8 164 17-183 251-448 (665)
499 PF09986 DUF2225: Uncharacteri 29.3 2.6E+02 0.0056 21.3 11.6 23 91-113 172-194 (214)
500 KOG1166 Mitotic checkpoint ser 29.1 2.7E+02 0.0059 26.9 7.2 102 135-240 62-164 (974)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-53 Score=376.57 Aligned_cols=287 Identities=21% Similarity=0.342 Sum_probs=141.1
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
||+.+||.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++ .|++++|.++|++|.+.|+.
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k----------~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------AGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------CcCHHHHHHHHHHHHHcCCC
Confidence 45555555555555555555555555555555555555555555555555 44444555555555544455
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE--KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC 159 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (307)
||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 5555555555555555555555555554443 33444444444444444444444444444444444444444444444
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
+|.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 44444444444444444444444443 44444444444444444444444444444444444444444444444444444
Q ss_pred cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 299 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (307)
++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|+.|+..+++
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444444444444444444444444444444444444444444444444444444443333
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-53 Score=373.24 Aligned_cols=294 Identities=16% Similarity=0.260 Sum_probs=286.6
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++ .|++++|.++|++|.+.|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k----------~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK----------SGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CcCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999 88899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHhhHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR--NGVSPSAETYNC 159 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 159 (307)
||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 678999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
++.+|++.|++++|.++|+.|.+.+. .|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCCCC
Q 021791 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 306 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (307)
++++|.+++++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.+.++.++...++.+|..|.
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888777664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=340.00 Aligned_cols=286 Identities=19% Similarity=0.223 Sum_probs=225.2
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
||+.+||++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+. .+..+.+.+++..+.+.|+.
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----------~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG----------LGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc----------CCcHHHHHHHHHHHHHhCCC
Confidence 56667777777777777777777777777766666777777666666666 44555555666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
||..+|+.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6777777778888888888888888887753 477788888888888888888888888888888888888888888
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
.+|++.|++++|.+++..|.+.+. .||..++++|+.+|++.|++++|.++|+.|.+ ||..+||.||.+|+++|+.
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 888888888888888888888876 78888888888888888888888888888764 5778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh-cCCCCCcccCCCCCCCCC
Q 021791 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-ESITFGSEFQNYHFKPYR 306 (307)
Q Consensus 242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 306 (307)
++|.++|++|.+.|+.||..||..++.+|.+.|..++|.++|+.|.+ .++.++...++.++..|.
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 88888888888888888888888888888888888888888888865 588888777777766554
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-47 Score=338.39 Aligned_cols=290 Identities=18% Similarity=0.219 Sum_probs=206.8
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
||+.+||++|.+|++.|++++|+++|.+|...|+.||..||+.++.+|++ .++++.+.+++..|.+.|+.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----------~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----------LGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----------cCChHHHHHHHHHHHHhCCc
Confidence 68899999999999999999999999999999999999999999999999 55566666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 6666666666666666666666666665542 355555556666666666666666666555555555555555555
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----------------------
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---------------------- 219 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------- 219 (307)
.+|++.|+++.|.+++..+.+.+. .|+..+++.|+.+|++.|++++|.++|+.|.+.
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 555555555555555555555544 445555555555555555444444444443321
Q ss_pred --------CC-----------------------------------------------------------------CCCHH
Q 021791 220 --------EL-----------------------------------------------------------------GLDLD 226 (307)
Q Consensus 220 --------~~-----------------------------------------------------------------~~~~~ 226 (307)
++ .||..
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 11 34666
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh-hcCCCCCcccCCCCCCCC
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-EESITFGSEFQNYHFKPY 305 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~ 305 (307)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|.+++|.++|+.|. +.++.|+.+.++.++..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 7888888899999999999999999999999999999999999999999999999999998 778888887776666554
Q ss_pred C
Q 021791 306 R 306 (307)
Q Consensus 306 ~ 306 (307)
.
T Consensus 636 ~ 636 (857)
T PLN03077 636 G 636 (857)
T ss_pred H
Confidence 3
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-46 Score=324.78 Aligned_cols=296 Identities=16% Similarity=0.222 Sum_probs=240.4
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh--------------------
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------------------- 61 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------------------- 61 (307)
||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.+..+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~ 200 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555553322221111
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 021791 62 -EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEE 140 (307)
Q Consensus 62 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 140 (307)
.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.+
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 5667777777777777777777777777777777777777777777777777888888888999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 141 LLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
+|++|.. +|..+|+.++.+|++.|+.++|.++|++|.+.+. .||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 281 vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 281 VFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999864 5899999999999999999999999999999887 9999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791 221 LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300 (307)
Q Consensus 221 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (307)
+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.|+.+|.+.|+.++|.++|++|.+.|+.|+..+++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999985 47899999999999999999999999999999999999988887
Q ss_pred CCCCCC
Q 021791 301 HFKPYR 306 (307)
Q Consensus 301 ~~~~~~ 306 (307)
++.+|.
T Consensus 432 ll~a~~ 437 (697)
T PLN03081 432 VLSACR 437 (697)
T ss_pred HHHHHh
Confidence 776654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-46 Score=333.82 Aligned_cols=285 Identities=16% Similarity=0.202 Sum_probs=204.7
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+. .+++..+.+++..|.+.|+.
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~----------~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG----------IPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC----------ccchhhHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999999999999999988 55556666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
||..+++.|+.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 6666667777777766666666666666643 466666666666666666666666666666666666666666666
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
.+|++.|+.+.+.+++..+.+.+. .||..+|+.|+.+|++.|++++|.++|+.|.. ||..+|+.+|.+|++.|++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCH
Confidence 666666666666666666666665 66666666666666666666666666666642 4666666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCCC
Q 021791 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 305 (307)
Q Consensus 242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (307)
++|.++|++|.+.|+.||..||..++.+|.+.|+.+++.++++.+.+.|+.++..+.+.++..|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666655555555444
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.6e-22 Score=164.27 Aligned_cols=280 Identities=15% Similarity=0.116 Sum_probs=226.8
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN---VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG 79 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 79 (307)
++.++..+...+...|++++|..+++.+...+..++ ...+..+...+.. .|++++|..+|+++.+..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~----------~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK----------AGLLDRAEELFLQLVDEG 137 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCC
Confidence 456788888999999999999999998887533222 2457777888888 788899999999998753
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 021791 80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE 155 (307)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (307)
+++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+... .+..
T Consensus 138 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 215 (389)
T PRK11788 138 -DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVR 215 (389)
T ss_pred -cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHH
Confidence 45677899999999999999999999999987654332 22455677788899999999999999987643 2566
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791 156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL 235 (307)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 235 (307)
.+..+...+.+.|++++|.++++++...+. .....++..++.+|...|++++|...++.+... .|+...+..++..+
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 778888999999999999999999987642 222467888999999999999999999998876 45666778889999
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh---chhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791 236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESITFGSEFQN 299 (307)
Q Consensus 236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (307)
.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.+++....
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 9999999999999998875 6888888888877664 568899999999999988888877543
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.5e-20 Score=155.36 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=221.0
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHH
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD---VTS 86 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 86 (307)
....+...|++++|...|.++.+.+ +.+..++..+...+.. .|++++|..+++.+...+..++ ...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRR----------RGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH----------cCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3455678899999999999999873 2355688888888888 8889999999999987642222 356
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA----ETYNCFFK 162 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 162 (307)
+..+...|...|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 7889999999999999999999998764 347788999999999999999999999999886544322 24566777
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|...|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998864 45677888899999999999999999999997643323467889999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
+|...++++.+. .|+...+..+...+.+.|++++|..+++++.+..
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999876 5777777888999999999999999999887653
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.2e-19 Score=162.58 Aligned_cols=268 Identities=9% Similarity=0.013 Sum_probs=163.2
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
+...|..+..++...|++++|.+.|+.+.+.. +.+...+..+..++.. .+++++|...|+++.+.. +.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV----------MKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-CC
Confidence 56778888888888888888888888887653 3355667777777777 666777777777776653 33
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
+..++..+...+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+.+...+ |+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 456666677777777777777777776666542 355566666666666666666666666666543 23345555566
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.+.+.|++++|...+..+.+.. +.+..++..+...|...|++++|.+.++.+.+.. +.+...++.+...+...|+ .
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 6666666666666666665553 4455566666666666666666666666665543 2244455555555555555 4
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
+|+..++++.+.. +-+..++..+...+...|++++|.++++++.+.+
T Consensus 821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4555555554431 1122333444444455555555555555554443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=1.4e-18 Score=158.43 Aligned_cols=221 Identities=7% Similarity=0.017 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+... .+...+..+...+...|++++|..+
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 455556666666655432 34555666666666666666666666666655432 2455566666666666666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL 221 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (307)
++++..... .+..++..+...+...|++++|..+++.+.... +.+...+..+...+...|++++|.+.++.+...+
T Consensus 658 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 658 LKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 666655432 245566666666666666666666666666554 4455566666666666666666666666666543
Q ss_pred CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
|+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|+.++|.+.++++.+..
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 333555556666666666666666666666542 3445566666666666777777777776665543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=2.4e-16 Score=137.12 Aligned_cols=267 Identities=9% Similarity=0.001 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV 84 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (307)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+.. .|++++|...++.+...... +.
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~----------~g~~~eA~~~~~~~~~~~P~-~~ 178 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL----------MDKELQAISLARTQAQEVPP-RG 178 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH----------CCChHHHHHHHHHHHHhCCC-CH
Confidence 344445555555555555555555555431 1123344444444444 55556666666555444211 22
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY 164 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (307)
..+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...+++....... +...+..+...+
T Consensus 179 ~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l 256 (656)
T PRK15174 179 DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAY 256 (656)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 222222 235556666666666666555432233334444455666677777777777776655432 455666666777
Q ss_pred hcCCChhH----HHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791 165 RGRKDANG----AMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 165 ~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (307)
...|++++ |...+++..... +.+...+..+...+...|++++|...++........ +...+..+..++...|+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 77777764 677777776654 455667777777777777777777777777765322 45556666777777777
Q ss_pred HHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 241 WKEACQYFVEMIEKGLLPQKV-TFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 241 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
+++|...++++... .|+.. .+..+..++...|+.++|...+++..+..
T Consensus 334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777777777754 34432 23334556677777777777777765443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4.7e-16 Score=135.29 Aligned_cols=270 Identities=8% Similarity=-0.006 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD 83 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 83 (307)
...+..++.+....|+++.|.+.|+++.... +.+...+..+...+.. .|++++|...++++.+.. +.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~----------~g~~~~Ai~~l~~Al~l~-P~~ 143 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK----------SKQYATVADLAEQAWLAF-SGN 143 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCc
Confidence 3455566677778899999999999988762 2245567777777777 788899999999988762 345
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+......++...+..+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 678888899999999999999999888766433 33333333 3478889999999999998776444445555666778
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH----HHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM----VREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
+...|++++|...+++..... +.+...+..+...+...|++++ |...++....... .+...+..+...+...|
T Consensus 222 l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCC
Confidence 889999999999999998875 5677888889999999999986 7999999888643 36778999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
++++|...+++.++.. +.+...+..+..++.+.|++++|...++++.+.+.
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999763 23455677788899999999999999999876543
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.5e-16 Score=123.90 Aligned_cols=204 Identities=19% Similarity=0.289 Sum_probs=157.0
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
+..+|..+|.+.++--..++|.+++++-.....+.+..+||.+|.+..- ....+++.+|.+..++|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--------------~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--------------SVGKKLVAEMISQKMTP 271 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--------------hccHHHHHHHHHhhcCC
Confidence 5679999999999999999999999999988889999999999987655 23378899999999999
Q ss_pred CHHHHHHHHHHHHhcCCchh----HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHhC----CCCC-
Q 021791 83 DVTSFSIVLHVYSRAHKPQL----SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED-AEELLGEMVRN----GVSP- 152 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~- 152 (307)
|..|||+++++.++.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ |..++.++... .++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998764 67788999999999999999999999998888755 44444444432 2222
Q ss_pred ---CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC-----------------------------------------CCc
Q 021791 153 ---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL-----------------------------------------CVP 188 (307)
Q Consensus 153 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~ 188 (307)
|...|...|..|.+..+.+-|.++..-+..... .-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 334556667777666666666555443332211 245
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 189 NIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
+..+...++++....|.++-..++|..+...|
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 66666777787777888888888887776655
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=2.6e-18 Score=135.11 Aligned_cols=262 Identities=16% Similarity=0.169 Sum_probs=115.5
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 88 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 88 (307)
.+...+.+.|++++|++++........+|+...|-.++..++.. .++.+.|.+.++++...+.. +...+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~---------~~~~~~A~~ay~~l~~~~~~-~~~~~~ 82 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS---------LGDYDEAIEAYEKLLASDKA-NPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccc-cccccc
Confidence 45677889999999999997765553345555554444433332 88999999999999887533 666777
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 167 (307)
.++.. ...+++++|.+++....+.. ++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 78877 79999999999998876653 466778889999999999999999999987542 345778888999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY 247 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 247 (307)
|+.++|.+.+++..+.. |.|......++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+..
T Consensus 160 G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 160 GDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp CHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999985 5578889999999999999999999998887763 34666788999999999999999999
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 248 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
|++.... .+.|+.+...+..++...|+.++|.++.++.-
T Consensus 237 ~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 237 LEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999886 24578888999999999999999999988764
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=8.3e-15 Score=127.65 Aligned_cols=188 Identities=7% Similarity=-0.060 Sum_probs=144.4
Q ss_pred CchhHHHHHHHHHHcC-C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 021791 99 KPQLSLDKLNFMKEKG-I-CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL 176 (307)
Q Consensus 99 ~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (307)
++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++....... +...|..+...+...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555554432 1 123445666777777888999999999888876432 456778888888899999999999
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791 177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 256 (307)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 256 (307)
|++..+.. +.+..++..+...+...|++++|...|+....... .+...+..+..++.+.|++++|+..|++.++. .
T Consensus 388 ~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~ 463 (615)
T TIGR00990 388 FDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-F 463 (615)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 99888775 56678888899999999999999999999888642 25677888888899999999999999998865 2
Q ss_pred CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 257 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 257 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
+-+...+..+...+...|++++|...+++..+...
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 33467788888899999999999999998766543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.5e-15 Score=129.27 Aligned_cols=258 Identities=11% Similarity=0.019 Sum_probs=207.3
Q ss_pred cCchhhHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791 17 INRIDMAERFLGEMIERG-VEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 94 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 94 (307)
.+++++|.+.|+.....+ ..| ....|..+...+.. .|++++|+..|++..+.. +.+...|..+...+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----------~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----------KGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 367899999999998764 234 34567777777777 788999999999998763 22466888899999
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAM 174 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (307)
...|++++|...|+...+... .+..+|..+...+...|++++|...|++....... +...+..+...+.+.|++++|+
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988753 36788999999999999999999999999987543 5677888889999999999999
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH------hHHHHHHHHHccCcHHHHHHHH
Q 021791 175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD------SYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~ 248 (307)
..+++..... +.+...++.+...+...|++++|.+.|+.........+.. .++.....+...|++++|..++
T Consensus 454 ~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999998764 5668889999999999999999999999988763221111 1222233344569999999999
Q ss_pred HHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 249 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 249 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
++.++.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus 532 ~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 532 EKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9988763 2334568889999999999999999999876544
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=5.3e-15 Score=120.45 Aligned_cols=279 Identities=15% Similarity=0.113 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhh---------------------
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERF--------------------- 61 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~--------------------- 61 (307)
..+|..+...+...|++++|+.++..+++. +| .+..|..+..++...|+...+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 457888888888999999999999988876 33 456777777777776665544221
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhH
Q 021791 62 -------------------------------------EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHKPQLS 103 (307)
Q Consensus 62 -------------------------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 103 (307)
.|++..|++.|++..+. .|+ ...|..|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 34444555555554443 222 22344444444444444444
Q ss_pred HHHHHHHHHcCC--------------------------------CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 021791 104 LDKLNFMKEKGI--------------------------------CP-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV 150 (307)
Q Consensus 104 ~~~~~~~~~~~~--------------------------------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 150 (307)
...|.+...... .| =...|+.|.+++...|++.+|+..|.+......
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 444333332211 11 123344444444444444444444444444322
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HHhHH
Q 021791 151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LDSYT 229 (307)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 229 (307)
. .....+.|...|...|.+++|.++|....+.. +--....+.|...|-+.|++++|+..+++.... .|+ ..+|+
T Consensus 352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 1 23344444444444444444444444444432 222334445555555555555555555554432 333 23455
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCC
Q 021791 230 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 293 (307)
Q Consensus 230 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (307)
.+-..|-..|+.+.|+..+.+.++. .|. ...++.|...|..+|++.+|.+-++...+....+
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 5555555555555555555555532 232 2345555556666666666666666555444433
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.5e-15 Score=114.91 Aligned_cols=251 Identities=18% Similarity=0.344 Sum_probs=204.9
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC
Q 021791 36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI 115 (307)
Q Consensus 36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 115 (307)
+.+..+|.++|.+.++ -...+.|.+++++-.....+.+..+||.+|.+-+-..+ .+++.+|....+
T Consensus 204 PKT~et~s~mI~Gl~K----------~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCK----------FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred CCCchhHHHHHHHHHH----------HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 4477899999999999 88899999999999888889999999999987665433 789999999999
Q ss_pred CCchhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH-HHHHHHHHhhc----CC-
Q 021791 116 CPTVATYTSVVKCLCSCGRIED----AEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG-AMKLYRQMKED----DL- 185 (307)
Q Consensus 116 ~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~- 185 (307)
.||..|||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++..+... ..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998876 56788899999999999999999999999888854 44455544332 11
Q ss_pred --CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791 186 --CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS----ELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 256 (307)
Q Consensus 186 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 256 (307)
-+.|...|...+..|.+..+.+.|.++..-.... -+.|+. .-|..+....+.....+.....|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1335667788888899999999999887766542 122332 2366777778888889999999999998878
Q ss_pred CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791 257 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300 (307)
Q Consensus 257 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (307)
.|+..+...++++..-.|.++-..+++..+...|-+....+..+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee 473 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE 473 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 89999999999999999999999999999998887666555443
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.1e-13 Score=113.93 Aligned_cols=251 Identities=11% Similarity=0.013 Sum_probs=163.6
Q ss_pred HhcCchhhHHHHHHHHHhcCCCCcHHHHH--HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 021791 15 CKINRIDMAERFLGEMIERGVEPNVVTYN--VLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 92 (307)
Q Consensus 15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 92 (307)
.+.|+++.|.+.+.++.+. .|+..... .....+.. .|++++|.+.++.+.+.. +-+......+..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~----------~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~ 195 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA----------RNENHAARHGVDKLLEVA-PRHPEVLRLAEQ 195 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 5556666666666666543 33332222 11233344 555666666666665553 224555556666
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTV-------ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR 165 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (307)
.|.+.|+++++.+++..+.+.+..++. .+|..++.......+.+...++++.+... .+.++.....+...+.
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHH
Confidence 666666666666666666655433221 12222233333333444445555544332 2235666777788888
Q ss_pred cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC 245 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 245 (307)
..|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+... -|...+..+...+.+.|++++|.
T Consensus 275 ~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999888874 5555322 23333456889999999988887743 26667888899999999999999
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-.
T Consensus 349 ~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 349 LAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999965 6999999999999999999999999998763
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=8.4e-15 Score=119.33 Aligned_cols=273 Identities=12% Similarity=0.086 Sum_probs=203.1
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhh-----------------------
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERF----------------------- 61 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~----------------------- 61 (307)
+|+.|...+-..|+...|++-|++..+. .|+ ...|-.|-..|...+.++.+...
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 4556666666677777777777766653 332 22343443333333332222110
Q ss_pred -HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791 62 -EKTIRNAEKVFDEMRVRGIEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE 139 (307)
Q Consensus 62 -~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 139 (307)
.|.++-|+..|++..+. .| -...|+.|..++-..|+..+|.+.|.+....... -..+.+.|.+.|...|.+++|.
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHH
Confidence 78889999999999876 34 4678999999999999999999999999887533 5678899999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
.+|......... -...++.|...|-+.|++++|+..+++..+.. +.-...|+.+...|...|+.+.|.+.+.+....
T Consensus 375 ~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 375 RLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 999998875332 45688999999999999999999999999874 445778999999999999999999999998876
Q ss_pred CCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHh----hchhHHHHHHHHHHhhhcC
Q 021791 220 ELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGLI----QSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 220 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~ 290 (307)
+ |. ...++.|...|-..|+..+|+.-+++.++ ++||. ..|..++.++- -.+.-+...++++-.++..
T Consensus 452 n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 452 N--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred C--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 3 44 56789999999999999999999999985 46664 34555554432 2222333444555444433
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.9e-14 Score=116.91 Aligned_cols=266 Identities=11% Similarity=-0.015 Sum_probs=202.2
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH-HHHHhcCCCC
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF-DEMRVRGIEP 82 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~ 82 (307)
+...+..+|...+++++|+++|+.+.+.. ..-+...|.+.+--+-+ +-++..+ +++.+. -+-
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--------------~v~Ls~Laq~Li~~-~~~ 419 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--------------EVALSYLAQDLIDT-DPN 419 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--------------hHHHHHHHHHHHhh-CCC
Confidence 33445666777777777777777776541 11245566666543332 1122222 222222 244
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
.+.+|.++..+|+-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+.......+ +-..|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 6789999999999999999999999999987533 7889999999999999999999999998765332 3445566778
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.|.+.++++.|+-.|+...+.+ +.+.+....+...+.+.|+.|+|+.+++++...+.. |+..--..+..+...++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYV 574 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchH
Confidence 8999999999999999999987 788899999999999999999999999999987644 6666556667777889999
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 292 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (307)
+|+..++++.+. ++-+...|..+...|.+.|+.+.|..-|--+.+.+.+
T Consensus 575 eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999875 3334556888889999999999999887776554433
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=4.7e-13 Score=119.95 Aligned_cols=264 Identities=13% Similarity=0.017 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
+...|..+..++.. +++++|...|.+.... .|+......+...+.. .|++++|...|+++... +|
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~----------~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ----------VEDYATALAAWQKISLH--DM 540 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHhcc--CC
Confidence 45677777777776 8888999988888776 4665443333334445 78899999999987654 45
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
+...+..+...+.+.|++++|.+.++...+.+.. +...+..+.......|++++|...+++..+.. |+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 5556677788889999999999999999887522 33333334444456699999999999998764 56788899999
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
++.+.|++++|...+++..... +.+...+..+..++...|+.++|+..++...+... -+...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999886 67788888999999999999999999999988743 36778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcH-hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 243 EACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
+|...+++.++. .|+. .+............+++.+.+-+++....
T Consensus 695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999865 4544 34444555566667777777766655443
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=4.8e-13 Score=124.19 Aligned_cols=269 Identities=11% Similarity=0.014 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHH------------HHHHHhhCCCCcchhhHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVL------------LNGVCRRASLHPNERFEKTIRNAE 69 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l------------l~~~~~~~~~~~~~~~~~~~~~a~ 69 (307)
|...+..+..++.+.|++++|++.|++..+..... ....|..+ ...+.+ .+++++|.
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~----------~g~~~eA~ 371 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK----------ANNLAQAE 371 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH----------CCCHHHHH
Confidence 56778888999999999999999999988763221 22222222 223344 67788999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHH-------------------------
Q 021791 70 KVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS------------------------- 124 (307)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------- 124 (307)
..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 9999988773 346667778888999999999999999988876422 2222222
Q ss_pred -----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 021791 125 -----------------VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCV 187 (307)
Q Consensus 125 -----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (307)
+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...++++.+.. +
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P 526 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--P 526 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence 223345678888888888888876543 56677778888889999999999988876643 2
Q ss_pred ccHHH--------------------------------------------------------------------------H
Q 021791 188 PNIHT--------------------------------------------------------------------------Y 193 (307)
Q Consensus 188 ~~~~~--------------------------------------------------------------------------~ 193 (307)
.+... +
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~ 606 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID 606 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence 22221 2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHhh
Q 021791 194 NILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQ 272 (307)
Q Consensus 194 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 272 (307)
..+...+.+.|++++|+..++.+..... .+...+..+...+...|++++|.+.++.+.+. .| +..+...+..++..
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh
Confidence 2233344455555566666555555432 24555666666666666666666666665543 22 23344555556666
Q ss_pred chhHHHHHHHHHHhhhc
Q 021791 273 SDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 273 ~g~~~~a~~~~~~~~~~ 289 (307)
.|+.++|.++++++.+.
T Consensus 684 ~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 67777777776666554
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.4e-13 Score=111.57 Aligned_cols=262 Identities=10% Similarity=-0.071 Sum_probs=173.3
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVV--TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSF 87 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 87 (307)
...+..+.|+++.|.+.+.+..+.. |+.. .-......+.. .+++++|...++.+.+.. +-+....
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~----------~~~~~~Al~~l~~l~~~~-P~~~~~l 190 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLA----------QNELHAARHGVDKLLEMA-PRHKEVL 190 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3455666677777777777776542 3332 22223444555 667788888888887774 3366677
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHH---HhcCChHHHHHHHHHHHhCCC---CCCHhhHHHHH
Q 021791 88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCL---CSCGRIEDAEELLGEMVRNGV---SPSAETYNCFF 161 (307)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~ 161 (307)
..+...+...|+++.+.+.+..+.+.+..+.......-...+ ...+..+++.+.+..+..... +.+...+..+.
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a 270 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence 778888888888888888888888776542222211111111 222222323334444443322 13677888888
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHH---HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHT---YNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLC 236 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~ 236 (307)
..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+... -|. .....+...+.
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHH
Confidence 89999999999999999998874 33321 11111222345778888888888776522 244 55678889999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 237 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999644444578999899999999999999999999998643
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=1.3e-15 Score=119.82 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
|+..|..+....-..++++.|.+.++++...+.. +...+..++.. .. .+++++|.++++...+. .+
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~----------~~~~~~A~~~~~~~~~~--~~ 108 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ----------DGDPEEALKLAEKAYER--DG 108 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-cc----------ccccccccccccccccc--cc
Confidence 4445555666777789999999999999877433 55567777665 56 78899999998877655 35
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG-ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
+...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+..+. |......++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~ 187 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALA 187 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 77778889999999999999999999987543 3457788889999999999999999999999987543 678889999
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
..+...|+.+++..++....+.. +.|...+..+..++...|+.++|...++...... +.|+.....+..++...|+.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----
T ss_pred HHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccc
Confidence 99999999999999999888775 4566788899999999999999999999998864 33888889999999999999
Q ss_pred HHHHHHHHHHHH
Q 021791 242 KEACQYFVEMIE 253 (307)
Q Consensus 242 ~~a~~~~~~~~~ 253 (307)
++|..+..+...
T Consensus 265 ~~A~~~~~~~~~ 276 (280)
T PF13429_consen 265 DEALRLRRQALR 276 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999887754
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=4.9e-13 Score=124.16 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=205.8
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
+..+...+...|++++|++.|++..+. .| +...+..+...+.+ .|++++|...++++.+.. +.+..
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~----------~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ----------AGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCCHH
Confidence 445667788899999999999999886 34 45677778888888 888999999999998753 33555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch---------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV---------ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
.+..+...+...++.++|...++.+......++. ..+..+...+...|+.++|..+++. .+.+...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 5555666778899999999999887543322221 1233456778899999999999872 2346667
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791 157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (307)
+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|++.++....... .+...+..+..++.
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~ 682 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHH
Confidence 7888999999999999999999999886 67888999999999999999999999998877532 25566777888899
Q ss_pred ccCcHHHHHHHHHHHHHcCC--CC---cHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 237 EKQKWKEACQYFVEMIEKGL--LP---QKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..|++++|..++++++...- .| +...+..+...+...|+.++|.+.+++..
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999987532 22 22456667788899999999999999874
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.8e-12 Score=99.32 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
.....+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...+++....... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3456778888999999999999999999987643 35778888999999999999999999999887543 567788888
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
..+...|++++|...+.+.......+.....+..+...+...|++++|...+........ .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987543233456777888899999999999999999887643 2567888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999876 3445667777888889999999999998887543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=4.6e-12 Score=113.73 Aligned_cols=232 Identities=9% Similarity=-0.001 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791 38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP 117 (307)
Q Consensus 38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (307)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++.+... +|
T Consensus 476 ~~~a~~~LG~~l~~-----------~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 476 DAAAWNRLAKCYRD-----------TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred CHHHHHHHHHHHHh-----------CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 45566666655543 4567799888887766 466555445555667899999999999998665 34
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI 197 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 197 (307)
+...+..+...+.+.|++++|...+++..+.+.. +...+..+.......|++++|...+++.... .|+...+..+.
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 5556677788899999999999999999886522 3334444444555679999999999999987 45788999999
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 277 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 277 (307)
.++.+.|+.++|+..+++....... +...++.+..++...|++++|+..+++.++.. +-+...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999987533 67788888889999999999999999999762 345667888999999999999
Q ss_pred HHHHHHHHhhhcC
Q 021791 278 TWRRLKKKLDEES 290 (307)
Q Consensus 278 ~a~~~~~~~~~~~ 290 (307)
+|...+++..+..
T Consensus 695 eA~~~l~~Al~l~ 707 (987)
T PRK09782 695 ATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999986654
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=9.2e-12 Score=102.61 Aligned_cols=253 Identities=7% Similarity=0.029 Sum_probs=190.9
Q ss_pred cCchhhHHHHHHHHHhcCCCCcHHHHHHH-HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHH
Q 021791 17 INRIDMAERFLGEMIERGVEPNVVTYNVL-LNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS--IVLHV 93 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~ 93 (307)
.|++++|++......+.. +++..+..+ ..+..+ .|+++.|.+.+.++.+. .|+..... .....
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~----------~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l 162 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQ----------RGDEARANQHLERAAEL--ADNDQLPVEITRVRI 162 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 589999998887765542 222222222 223244 78899999999999876 55554333 44678
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhc
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRG 166 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 166 (307)
+...|+++.|.+.++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988644 7888999999999999999999999999987655322 233344444455
Q ss_pred CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791 167 RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ 246 (307)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 246 (307)
..+.+...++++.+.+.. +.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+
T Consensus 242 ~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred hcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 566777888888876553 567888999999999999999999999999885 4455322 3344456699999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 247 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
..+...+. .+-|+..+..+.+.|.+.|++++|++.|++..+...
T Consensus 316 ~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 316 VLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999876 233555678889999999999999999999977643
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.6e-12 Score=100.07 Aligned_cols=193 Identities=12% Similarity=0.026 Sum_probs=149.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791 88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (307)
..+.+.|+-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+.++...+.++. |-..|-.+.++|.-.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHh
Confidence 33344566677888999999999888654 6778889999999999999999999999887654 888999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY 247 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 247 (307)
+.+.-|+-.|++...-. |.|+..|.+|.+.|.+.++.++|++.|......|-. +...+..+...|-+.++.++|...
T Consensus 412 ~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred cchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999988875 678899999999999999999999999998887633 667889999999999999999999
Q ss_pred HHHHHHc----CCCCc--HhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 248 FVEMIEK----GLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 248 ~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
|++.++. |...+ .....-|..-+.+.+++++|......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 8887663 33222 11222244445566666555554433
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=1.7e-11 Score=105.37 Aligned_cols=275 Identities=11% Similarity=0.085 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHHHh-----cCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCK-----INRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMR 76 (307)
Q Consensus 3 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 76 (307)
+...|...+.+-.. .+.+++|.+.|++..+. .|+ ...|..+..++...+...... ..+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~-~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFD-KQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHH
Confidence 34555566655322 23467999999999876 454 445555555444322110000 0466899999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 77 VRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 77 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
+.. +-+...+..+...+...|++++|...+++..+.+.. +...+..+...+...|++++|...+++..+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 874 347778888888999999999999999999988643 6778888999999999999999999999987544 2333
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791 157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (307)
+..++..+...|++++|...+++...... +.+...+..+..++...|+.++|...+.++.... +.+....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 33445456678999999999999877642 2345567778888999999999999999876652 123444566666777
Q ss_pred ccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 237 EKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
..| ++|...++.+.+. .-.+...-+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 5888888887664 222322233 33345556777766666 7776654
No 32
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=3.1e-15 Score=84.22 Aligned_cols=50 Identities=42% Similarity=0.947 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 51 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 51 (307)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|+++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=2.6e-11 Score=94.19 Aligned_cols=256 Identities=11% Similarity=0.113 Sum_probs=189.3
Q ss_pred cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 021791 17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 96 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 96 (307)
.|+|.+|+++..+-.+.+-.| ...|..-..+.-+ .|+.+.+-.++.+..+..-.++....-...+....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~q----------rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQ----------RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHh----------cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 588999999998877765433 2234444444444 78888888888888776445566677777778888
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhcCCC
Q 021791 97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRGRKD 169 (307)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 169 (307)
.|+...|..-+.++.+.+.. ..........+|.+.|++.....++..+.+.+.--+. .+|+.+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888877654 6677888888888888888888888888887655333 356666666666666
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC--------------------------
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-------------------------- 223 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 223 (307)
.+.-...|+.....- ..++..-.+++.-+..+|+.++|.++..+..+++..|
T Consensus 245 ~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 245 SEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred chHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 666556666665543 3445555666667777777777777766655543332
Q ss_pred ----CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 224 ----DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 224 ----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
++..+..+-..|.+++.|.+|...|+..++. .|+..+|..+..++.+.|+.++|.++.++-.-
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4456788889999999999999999988764 79999999999999999999999999988653
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=7.7e-12 Score=94.52 Aligned_cols=224 Identities=15% Similarity=0.090 Sum_probs=141.0
Q ss_pred cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 021791 17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD---VTSFSIVLHV 93 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 93 (307)
.++.++|.++|-+|.+.. +-+..+.-+|-.-+-+ .|.++.|+++...+.++.-.+. ......|.+-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRs----------RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRS----------RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHh----------cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 466778888888887641 1133344444444555 6777777777777765421111 1234455566
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhcCCC
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS----AETYNCFFKEYRGRKD 169 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 169 (307)
|...|-++.|+++|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 77777777777777777765432 455667777777777777777777777766554433 2345555566666667
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV 249 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 249 (307)
.+.|..++.+....+ +.++..--.+.+.....|+++.|.+.|+.+.+.+...-..+...|..+|...|+.++....+.
T Consensus 196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777776665 445555555666677777777777777777776544445566667777777777777766666
Q ss_pred HHHHc
Q 021791 250 EMIEK 254 (307)
Q Consensus 250 ~~~~~ 254 (307)
++.+.
T Consensus 274 ~~~~~ 278 (389)
T COG2956 274 RAMET 278 (389)
T ss_pred HHHHc
Confidence 66543
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=2.7e-11 Score=107.97 Aligned_cols=277 Identities=13% Similarity=0.058 Sum_probs=195.2
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhh------------------------
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERF------------------------ 61 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~------------------------ 61 (307)
+..+..++...|+.++|+..++++.+. .| +...+..+..++...+....+...
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r 196 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR 196 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888888876 33 333444444444433332211000
Q ss_pred ---------HHHH---HHHHHHHHHHHhc-CCCCCHH-HH----HHHHHHHHhcCCchhHHHHHHHHHHcCCC-CchhhH
Q 021791 62 ---------EKTI---RNAEKVFDEMRVR-GIEPDVT-SF----SIVLHVYSRAHKPQLSLDKLNFMKEKGIC-PTVATY 122 (307)
Q Consensus 62 ---------~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 122 (307)
.+++ ++|++.++.+.+. .-.|+.. .+ ...+..+...|+.++|...|+.+.+.+.. |+. .-
T Consensus 197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 1122 5677777777754 1223221 11 11133456779999999999999887632 332 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----------CCcc
Q 021791 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----------CVPN 189 (307)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~ 189 (307)
..+...|...|++++|+..|+++....... .......+..++...|++++|...++.+..... ..|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 235778999999999999999987653221 134566677788999999999999999987631 0123
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHH
Q 021791 190 ---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFET 265 (307)
Q Consensus 190 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ 265 (307)
...+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|+..+++.+.. .|+ ...+..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~ 432 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVE 432 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHH
Confidence 2355677888899999999999999998874 336788999999999999999999999999875 455 456666
Q ss_pred HHHHHhhchhHHHHHHHHHHhhhc
Q 021791 266 LYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
....+...|++++|+.+++++.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777889999999999999998654
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.3e-11 Score=105.99 Aligned_cols=238 Identities=10% Similarity=-0.027 Sum_probs=174.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCchhHHHHH
Q 021791 37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---------AHKPQLSLDKL 107 (307)
Q Consensus 37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~ 107 (307)
.+...|...+++........ .+.+++|...|++..+.. +-+...|..+..++.. .+++++|...+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~-----~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYT-----PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CChHHHHHHHHhHHHHHccC-----HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 35566767777643322111 567889999999998773 2245556666555442 24478999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 021791 108 NFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCV 187 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (307)
++..+.+.. +...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+ +
T Consensus 328 ~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P 403 (553)
T PRK12370 328 IKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--P 403 (553)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 999988644 7788888989999999999999999999987643 56788888999999999999999999999885 3
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhh-HHHH
Q 021791 188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT-FETL 266 (307)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l 266 (307)
.+...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+..+ ...+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence 3333444455556678999999999999876532224556777888889999999999999987654 444443 4455
Q ss_pred HHHHhhchhHHHHHHHHHHhhh
Q 021791 267 YRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
...+...| +.+...++++.+
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHH
Confidence 55667777 477776666644
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=3.8e-11 Score=107.04 Aligned_cols=266 Identities=9% Similarity=0.024 Sum_probs=157.1
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 88 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 88 (307)
-.+......|+.++|++++.+.... -+.+...+..+..++.. .+++++|.++|++..+.. +.+...+.
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~----------~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRN----------LKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3445555666666666666666542 12334445555555555 555666666666665542 23344555
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK 168 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (307)
.+...+...|++++|...++++.+... .+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 666666666666666666666665522 2344 555666666666666666666666655332 3333344444444444
Q ss_pred Chh----------------------------------------------HHHHHHHHHhhcCCCCccHH-HHH----HHH
Q 021791 169 DAN----------------------------------------------GAMKLYRQMKEDDLCVPNIH-TYN----ILI 197 (307)
Q Consensus 169 ~~~----------------------------------------------~a~~~~~~~~~~~~~~~~~~-~~~----~l~ 197 (307)
..+ +|+..++.+.......|+.. .+. ..+
T Consensus 165 ~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 165 LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 444 34444444443210022211 111 113
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---cHhhHHHHHHHHhhc
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQS 273 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~ 273 (307)
.++...|++++|+..|+.+...+.. |+. .-..+..+|...|++++|+..|+++.+..-.. .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445778999999999999887532 332 22225678899999999999999987653111 123456677788999
Q ss_pred hhHHHHHHHHHHhhhcC
Q 021791 274 DMLRTWRRLKKKLDEES 290 (307)
Q Consensus 274 g~~~~a~~~~~~~~~~~ 290 (307)
|++++|.++++++.+..
T Consensus 324 g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 324 ENYPGALTVTAHTINNS 340 (765)
T ss_pred ccHHHHHHHHHHHhhcC
Confidence 99999999999987654
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=1.4e-11 Score=94.37 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=169.1
Q ss_pred CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791 37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC 116 (307)
Q Consensus 37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (307)
.....+..+...+.. .+++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+....
T Consensus 29 ~~~~~~~~la~~~~~----------~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 29 KAAKIRVQLALGYLE----------QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred cHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345677777888888 788999999999988763 445778888999999999999999999999887543
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791 117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI 195 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (307)
+...+..+...+...|++++|...+++....... .....+..+...+...|++++|...+.+..... +.+...+..
T Consensus 98 -~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 174 (234)
T TIGR02521 98 -NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLE 174 (234)
T ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHH
Confidence 6677888899999999999999999999875322 234567778888999999999999999998875 456778889
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 196 LIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999998876 3446677778888888999999999998887643
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=6.1e-11 Score=89.76 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN---VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
.+--+|.+.|.+.|..++|+++.+.+.++.-.+. ....-.|-+-|.. .|-++.|+++|..+.+.| .
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~----------aGl~DRAE~~f~~L~de~-e 138 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA----------AGLLDRAEDIFNQLVDEG-E 138 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHhcch-h
Confidence 3445688899999999999999999987621111 1233344455555 788999999999998764 2
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY 157 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (307)
--......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+++.|..++++..+.+.+ ++..-
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAs 217 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRAS 217 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehh
Confidence 2455678899999999999999999999988765433 234555666667788999999999999887544 55566
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE 237 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (307)
..+.+.....|+++.|.+.++.+.+.+. .--+.+...|..+|...|+.++....+..+.+... ....-..+.+.-..
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~ 294 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIEL 294 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHH
Confidence 6677889999999999999999998864 44466788999999999999999999999887643 44444444444444
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh---chhHHHHHHHHHHhhhcCCCCCccc
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESITFGSEF 297 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 297 (307)
..-.+.|..++.+-+.+ +|+...+..++..-.. .|..++-...+++|....+.-.+..
T Consensus 295 ~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 295 QEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred hhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 44556777776666654 6999999999987543 4457777788888876665555443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.8e-11 Score=101.46 Aligned_cols=263 Identities=9% Similarity=-0.015 Sum_probs=182.8
Q ss_pred hcCchhhHHHHHHHHHhcCCCCcHHHH-HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 021791 16 KINRIDMAERFLGEMIERGVEPNVVTY-NVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV--TSFSIVLH 92 (307)
Q Consensus 16 ~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~ 92 (307)
..|+++.|.+.+....+. .|+...+ -....+... .|+.+.|.+.+.+..+. .|+. ..-.....
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~----------~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQ----------RGDEARANQHLEEAAEL--AGNDNILVEIARTR 161 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHh--CCcCchHHHHHHHH
Confidence 469999999999887665 4554333 333344455 78899999999998765 3443 34444578
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHH---hcCC
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN-CFFKEY---RGRK 168 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~ 168 (307)
.+...|+++.|...++.+.+.... +..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998644 7778899999999999999999999999988654 333332 111111 2222
Q ss_pred ChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHccCcHHHHH
Q 021791 169 DANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSY-TMLIHGLCEKQKWKEAC 245 (307)
Q Consensus 169 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 245 (307)
..+++.+.+..+..... .+.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 22323334444433310 0247888999999999999999999999999987433221111 11222234457888999
Q ss_pred HHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcc
Q 021791 246 QYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 296 (307)
Q Consensus 246 ~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (307)
+.+++..+. .|+. ....++...+.+.|++++|.+.|++.......++++
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 999888865 3444 456688899999999999999999655544445443
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=5.5e-11 Score=104.86 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 456666666666666653 223455555666666666666666666666555 33444443333333334455456666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH------------------------------------------
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQ------------------------------------------ 179 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------------------------------ 179 (307)
++++.+..+. +...+..+..+..+.|-...|.++..+
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 6666665422 444555555555554444333333321
Q ss_pred ------HhhcCCCCcc-HH----HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791 180 ------MKEDDLCVPN-IH----TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 180 ------~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 248 (307)
+...-...|. .. ...-.+-++...|+..++++.++.+...+.+....+-..+..+|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 1110000111 11 112334456677788888888888887765545557778888999999999999999
Q ss_pred HHHHHcC-----CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 249 VEMIEKG-----LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 249 ~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
+.+.... ..++......|.-++..++++++|..+++++.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9886642 1223333567888899999999999999998763
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.8e-12 Score=104.11 Aligned_cols=250 Identities=11% Similarity=0.045 Sum_probs=197.1
Q ss_pred chhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 021791 19 RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSR 96 (307)
Q Consensus 19 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~ 96 (307)
+..+|...|..+.++ +.-+......+-++|.. ..++++|.++|+.+.+.. ..-+...|.+.+-.+-+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFE----------l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFE----------LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 467899999986555 23234667778888988 899999999999998763 12256677777755433
Q ss_pred cCCchhHHHHH-HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791 97 AHKPQLSLDKL-NFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK 175 (307)
Q Consensus 97 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (307)
+-++..+ +.+.... +..+.+|..+.++|.-.++.+.|+..|++..+.+.. ...+|+.+..-+....++|.|..
T Consensus 403 ----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 ----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred ----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHH
Confidence 2233433 3333332 347889999999999999999999999999986433 67889988888999999999999
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791 176 LYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 255 (307)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 255 (307)
.|+...... +.+...|.-+.-.|.+.++++.|+-.|+.+.+.+.. +......+...+-+.|+.++|+.++++.....
T Consensus 477 ~fr~Al~~~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 477 SFRKALGVD--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhcCC--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 999998765 566777888899999999999999999999987644 66667777788889999999999999998763
Q ss_pred CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 256 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 256 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
+-|+.+--.-...+...++.++|.+.++++++.
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 235555555677788899999999999999764
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.7e-12 Score=96.46 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=179.0
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791 38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP 117 (307)
Q Consensus 38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (307)
|-.=-+.+-++|.+ .|.+.+|.+-|+...+. .|-+.||..|-+.|.+..++..|+.++.+-.+. ++.
T Consensus 222 dwwWk~Q~gkCylr----------Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~ 288 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLR----------LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPF 288 (478)
T ss_pred hHHHHHHHHHHHHH----------hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCc
Confidence 33334667778888 77788888888887776 667788888888888888888888888887765 222
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI 197 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 197 (307)
|+....-+.+.+-..++.++|.++|+...+... .++.....+...|.-.++++-|+++++++...| ..+...|+.+.
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~Nig 365 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIG 365 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHH
Confidence 444445567777888888888888888877643 366677777777888888888898888888888 46677888888
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 275 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 275 (307)
-+|.-.+++|.++.-|.+....--.|+. ..|-.+-...+..|++..|.+.|+-.+..+ .-+...++.|.-.-.+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCc
Confidence 8888888888888888887765444443 457777777788888888888888877653 3355678887777788888
Q ss_pred HHHHHHHHHHhhhcCC
Q 021791 276 LRTWRRLKKKLDEESI 291 (307)
Q Consensus 276 ~~~a~~~~~~~~~~~~ 291 (307)
+++|+.+++.......
T Consensus 445 i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMP 460 (478)
T ss_pred hHHHHHHHHHhhhhCc
Confidence 8888888887655443
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=3.3e-10 Score=100.04 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=94.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHHHHHHHHHHHHhc
Q 021791 128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIHTYNILIGMFMAL 203 (307)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 203 (307)
++...++..++++.|+.+...+.+....+-..+.++|...+++++|..+++++..... .+++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3445566666666666666655444445666667777777777777777777655421 022333345666677777
Q ss_pred CcHHHHHHHHHHHhhCCC-------------CCCHH-hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791 204 NRMDMVREIWNHVKGSEL-------------GLDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 269 (307)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 269 (307)
+++++|..+++.+.+... .||-. .+..++..+...|+..+|.+.++++... -+-|......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 777777777777665211 11111 2333455566667777777777777654 23455566666666
Q ss_pred HhhchhHHHHHHHHHHhh
Q 021791 270 LIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 270 ~~~~g~~~~a~~~~~~~~ 287 (307)
+...|...+|++.++...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 460 YLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 666666666666665543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.9e-10 Score=91.15 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC----------------------------
Q 021791 64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI---------------------------- 115 (307)
Q Consensus 64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------- 115 (307)
+.+++..-.+...+.|++-+...-+-...+.....|+++|+.+|+++.+...
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 4455555555555556554444444444444556667777777777666521
Q ss_pred -----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH
Q 021791 116 -----CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI 190 (307)
Q Consensus 116 -----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (307)
+.-+.|..++.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|..-++...+.+ +.|-
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~Dy 398 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDY 398 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhH
Confidence 112233444555577788999999999999987654 67789999999999999999999999999987 8899
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 021791 191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 270 (307)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 270 (307)
..|-.|.++|...+...-|+-.|++..... +.|...|..|.++|.+.++.++|++.|.+....|- .+...+..|...+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLy 476 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLY 476 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHH
Confidence 999999999999999999999999999874 34899999999999999999999999999998763 3667899999999
Q ss_pred hhchhHHHHHHHHHHhhh
Q 021791 271 IQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 271 ~~~g~~~~a~~~~~~~~~ 288 (307)
.+.++.++|.+.+++..+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999988755
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1e-12 Score=111.28 Aligned_cols=248 Identities=20% Similarity=0.207 Sum_probs=178.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHH
Q 021791 25 RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSL 104 (307)
Q Consensus 25 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 104 (307)
.++..+...|+.|+..||..+|..|+. .|+++.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~----------~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCT----------KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcc----------cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence 456778888999999999999999999 66667777 8888888888889999999999999999888776
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH---HHHHHh----CCCCCCHhhH---------------HHHHH
Q 021791 105 DKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL---LGEMVR----NGVSPSAETY---------------NCFFK 162 (307)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~~~~---------------~~l~~ 162 (307)
.|.+.||..|..+|...||+.--..+ +..+.. .|.. ....+ ...+.
T Consensus 80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHH
Confidence 67889999999999999987653222 222221 1221 11111 11222
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.....|-++.+++++..+.......|..+ +++-+.. .+...+++....+...-.|++.+|..++.+-..+|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 23344555555555555544332122111 2333322 23445555555554333689999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCC
Q 021791 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 304 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (307)
.|..++.+|.+.|++.+.+-|..|+-+ .++...++.+++-|.+.|+.+++++....+-|
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 999999999999999999999988866 88889999999999999999999987655443
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=1.1e-13 Score=77.88 Aligned_cols=50 Identities=36% Similarity=0.683 Sum_probs=36.1
Q ss_pred CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791 223 LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272 (307)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 272 (307)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777777653
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=9.3e-12 Score=94.34 Aligned_cols=211 Identities=12% Similarity=0.045 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
|-.-=+-+.++|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+..+++.|+.++.+-.+. .+.++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4444467889999999999999999998877 456778999999999999999999999998876 3335555567778
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.+...++.++|.++++...+.. +.++....++...|.-.++.+.|...++++.+.|+. ++..|+.+.-+|.-.++++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 8999999999999999999886 678888888888899999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcH--hhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791 243 EACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 299 (307)
Q Consensus 243 ~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (307)
-++.-|++.+..--.|+. ..|..+-......|++..|.+.|+.....+-..+..+.|
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 999999999876444443 467778888889999999999999877666555544443
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=5.4e-12 Score=106.97 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=167.8
Q ss_pred CccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791 1 MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI 80 (307)
Q Consensus 1 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 80 (307)
+|+-++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++ .+.+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And----------~Enpk----------- 79 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND----------AENPK----------- 79 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc----------ccCCC-----------
Confidence 589999999999999999999998 99999888888888999999988887443 33332
Q ss_pred CCCHHHHHHHHHHHHhcCCchh---HHHHHHHH----HHcCCCCchhhHHHHHHH--------------HHhcCChHHHH
Q 021791 81 EPDVTSFSIVLHVYSRAHKPQL---SLDKLNFM----KEKGICPTVATYTSVVKC--------------LCSCGRIEDAE 139 (307)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~ll~~--------------~~~~~~~~~a~ 139 (307)
.|.+.+|..|+.+|...||... +.+.+..+ ...|+......+-..+++ ..-.|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998654 22222222 223332111122112122 22223333344
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
+++..+...... . .+..+++-+.....+ ..++......... .|++.+|.+++..-...|+.+.|..++.+|++.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntp--vekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTP--VEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccCCch--HHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 333333221110 1 111124444333332 2333333332222 589999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 275 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 275 (307)
|++.+.+-|..++-+ .++...+..+++.|...|+.|+..|+.-.+-.+...|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999988888876 78888899999999999999999999888877777554
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=4.5e-11 Score=94.69 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=188.6
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhhCC-CCcchh------------------------hHHHH
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV-CRRAS-LHPNER------------------------FEKTI 65 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~-~~~~~~------------------------~~~~~ 65 (307)
..+.+.|+++.|.+++.-+.+..-+.-...-+.|-..+ .+.|. +..+.. ..|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 45788999999999998887663332222222222222 21111 111111 16888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 021791 66 RNAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELL 142 (307)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 142 (307)
++|.+.|++.... |...-.+|.. .+-..|++++|++.|-.+... +..+..+...+.+.|-...+..+|.+++
T Consensus 507 dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 507 DKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred HHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999888765 4433333332 456788999999998877554 2337778888899999999999999998
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791 143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG 222 (307)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (307)
.+.... ++.|+.....|...|-+.|+...|++.+-.-.+. ++.+..+...|...|....-+++++..|++..- +.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 877654 4557888999999999999999999888766554 377889999999999999999999999998765 47
Q ss_pred CCHHhHHHHHHHH-HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791 223 LDLDSYTMLIHGL-CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 275 (307)
Q Consensus 223 ~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 275 (307)
|+..-|..|+..| .+.|++.+|+++++....+ ++-|..++..|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8999999887655 6789999999999998775 77788899999999888774
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=5.7e-10 Score=80.73 Aligned_cols=199 Identities=11% Similarity=-0.013 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR 165 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (307)
+..-|.-.|...|+...|.+-+++..+.... +..+|..+...|-+.|+.+.|.+-|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3455677899999999999999999998644 7888999999999999999999999999987554 7788899999999
Q ss_pred cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC 245 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 245 (307)
..|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.+++....... ...+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999999987654555778999998999999999999999999987533 5667788888899999999999
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
..++.....+. ++..+....|+.-...|+.+.+.+.=..+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999988765 8999998889998999999888877666543
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.6e-09 Score=83.30 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD 83 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 83 (307)
..++-+........|+.+.|..-.+++.+.+ +-+........++|.+ .|++.+...++..+.+.|.-.+
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~----------~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIR----------LGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHH----------hccHHHHHHHHHHHHHccCCCh
Confidence 3444455566667777777777777776653 2355677777788888 8899999999999999886544
Q ss_pred H-------HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 84 V-------TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 84 ~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
. .+|+.+++-....+..+.-...++...++ .+.++..-..++.-+.++|+.++|.++.++..+.+..|+
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--- 297 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---
Confidence 4 46888888888887778777788777654 344677778889999999999999999999998876655
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791 157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (307)
-...-.+.+-++.+.-.+..++-.+.. +.++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.
T Consensus 298 -L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 -LCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD 372 (400)
T ss_pred -HHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence 222334667888888888888777765 456688999999999999999999999987775 789999999999999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCc
Q 021791 237 EKQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
+.|+..+|.++.++.+-.-.+|+
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999999998875544443
No 53
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=4.1e-09 Score=90.14 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=169.4
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 91 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 91 (307)
......|++++|.+++.+.++.. +.+...|.+|-..|-. .|+.+++...+--..... +.|...|..+.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEq----------rGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQ----------RGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH----------cccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 33444599999999999998873 4467789999999988 677777776665444432 34667777777
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhcC
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE----TYNCFFKEYRGR 167 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 167 (307)
....+.|+++.|.-.|.+.++... ++...+-.-...|-+.|+...|...|.++.....+.|.. .....+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 777788888888888888777643 244455555667777788888888877777654322222 222334555566
Q ss_pred CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----------------------------
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG----------------------------- 218 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------- 218 (307)
++-+.|.+.++.....+.-..+...++.++..+.+...++.+......+..
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 666777777766655322234444555566666666666655555444433
Q ss_pred --------------------------------CCCC--CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791 219 --------------------------------SELG--LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 264 (307)
Q Consensus 219 --------------------------------~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 264 (307)
.+.. -+...|.-+..+|...|++++|+.+|..+.+.-..-+...|.
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 0000 022345566677777777777777777777653333455677
Q ss_pred HHHHHHhhchhHHHHHHHHHHhhh
Q 021791 265 TLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
.+.++|...|..++|.+.+++...
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777777777777777643
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.5e-10 Score=98.01 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhc---CCCCcHH-----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIER---GVEPNVV-----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM 75 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~-----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 75 (307)
+...|.+.......|++.+|...|...... ...++.. |....+..+... .++.+.|.+.|..+
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~---------l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE---------LHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh---------hhhhhHHHHHHHHH
Confidence 456788888888999999999999988765 2233331 222222233332 67888999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH
Q 021791 76 RVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-SPSA 154 (307)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 154 (307)
.+.. +-=+..|.-++......+...+|...+....+..- .++..++.+...+.+...+..|..-|..+.+.-. .+|+
T Consensus 523 lkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 523 LKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 8772 22344455555444456778889999988877643 3677777788899999999988887776665422 2455
Q ss_pred hhHHHHHHHHhc------------CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791 155 ETYNCFFKEYRG------------RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG 222 (307)
Q Consensus 155 ~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (307)
.+.-.|.+.|.. .+..++|+++|.+..+.. +-|...-+-+.-.++..|++..|..+|..+.+...
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~- 677 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS- 677 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence 555555555532 245678999999998886 77888888899999999999999999999998743
Q ss_pred CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCC
Q 021791 223 LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 293 (307)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (307)
-...+|-.+..+|...|+|..|+++|+...+. .-.-+......|.+++.+.|.+.+|.+.+.........-
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 25678899999999999999999999988776 334567788999999999999999999887766554433
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=1.8e-09 Score=89.53 Aligned_cols=239 Identities=18% Similarity=0.144 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-----C-CCCCHHH-HHHHHHHHHhcCCchhHHHHHHHHH
Q 021791 39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-----G-IEPDVTS-FSIVLHVYSRAHKPQLSLDKLNFMK 111 (307)
Q Consensus 39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (307)
..+...+...|.. .|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++.
T Consensus 199 ~~~~~~La~~y~~----------~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 199 LRTLRNLAEMYAV----------QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4466667788888 88889999998887654 2 1334433 3447778999999999999999986
Q ss_pred Hc-----CC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCH-hhHHHHHHHHhcCCChhHHHHHH
Q 021791 112 EK-----GI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN-----GVS-PSA-ETYNCFFKEYRGRKDANGAMKLY 177 (307)
Q Consensus 112 ~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~ 177 (307)
.. |- +--..+++.|..+|.+.|++++|...+++..+. +.. |.. ..++.+...+...+++++|..++
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 53 21 123456778888999999999998888876542 111 222 24566777899999999999998
Q ss_pred HHHhhcCC--CCc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CC--CC-CHHhHHHHHHHHHccCcHHHH
Q 021791 178 RQMKEDDL--CVP----NIHTYNILIGMFMALNRMDMVREIWNHVKGS----EL--GL-DLDSYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 178 ~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a 244 (307)
....+.-. +.+ -..+++.|...|...|++++|+++++.+... +. .+ ....++.+...|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 87644211 122 2467899999999999999999999987753 11 11 244678899999999999999
Q ss_pred HHHHHHHHHc----CC-CCc-HhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 245 CQYFVEMIEK----GL-LPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 245 ~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..+|.+...- |. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9998876432 22 223 2478999999999999999999988764
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.9e-09 Score=89.45 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhc-----CC-CCcHHH-HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIER-----GV-EPNVVT-YNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
+...+...|...|+++.|+.++.+..+. |. .|...+ .+.+-..|.. .+++.+|..+|+++...
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----------~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----------LGKYDEAVNLYEEALTI 270 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHH
Confidence 4455899999999999999999988654 21 233332 3334555666 77788888888877553
Q ss_pred -----C--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-----CC-CCc-hhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791 79 -----G--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-----GI-CPT-VATYTSVVKCLCSCGRIEDAEELLGE 144 (307)
Q Consensus 79 -----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 144 (307)
| .+--..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...+...+++++|..+++.
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2 1223457888888999999999998888776432 22 122 23466777888999999999999987
Q ss_pred HHhC---CCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcC----C--CCccHHHHHHHHHHHHhcCcHHHHHH
Q 021791 145 MVRN---GVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDD----L--CVPNIHTYNILIGMFMALNRMDMVRE 211 (307)
Q Consensus 145 ~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (307)
..+. -+.++ ..+++.|...|...|++++|.+++++..... . ..-.-..++.|...|.+.++..+|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 6542 11222 4588999999999999999999999886532 1 02224567888999999999999999
Q ss_pred HHHHHhh----CCC-CC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 212 IWNHVKG----SEL-GL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 212 ~~~~~~~----~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
+|.+... .|. .| ...+|..|...|...|+++.|.++.+...+
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9877543 221 12 345799999999999999999999888763
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.3e-09 Score=84.92 Aligned_cols=151 Identities=9% Similarity=0.045 Sum_probs=82.6
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 021791 97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL 176 (307)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (307)
.|+.-.+..-|+..+.....++ ..|-.+..+|...++.++....|+...+.+.. ++.+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 4666677777777766543322 22555666666666666666666666665443 445555555555555555555555
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
|++..... +-+...|-.+..+..+.++++++...|++.+.+ ++-.+..|+...+.+..+++++.|.+.|+..+
T Consensus 417 F~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 417 FQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 55555443 334444444444445555555555555555544 22244455555555555555555555555444
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.32 E-value=2e-08 Score=86.10 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
+...|.+|...|-+.|+.+++...+--.-.. .+-|...|..+-.-..+ .|.+.+|.-.|.+.++.. ++
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~----------~~~i~qA~~cy~rAI~~~-p~ 239 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQ----------LGNINQARYCYSRAIQAN-PS 239 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHh----------cccHHHHHHHHHHHHhcC-Cc
Confidence 4567889999999999999988877554433 23356778777777676 777888888888887763 44
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHH----HHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYT----SVVKCLCSCGRIEDAEELLGEMVRN-GVSPSAETY 157 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 157 (307)
+....-.-...|-+.|+...|...|.++.+...+.|..-+. ..++.+...++.+.|.+.++..... +-..+...+
T Consensus 240 n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ 319 (895)
T KOG2076|consen 240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL 319 (895)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH
Confidence 55555556667777888888888888877764332322222 2344455666667777777666542 223344556
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhh-------------------------------------------------------
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKE------------------------------------------------------- 182 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------------------------- 182 (307)
+.++..+.+...++.+.........
T Consensus 320 ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l 399 (895)
T KOG2076|consen 320 NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL 399 (895)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH
Confidence 6666666666666666655554433
Q ss_pred ------cCC-CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791 183 ------DDL-CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 255 (307)
Q Consensus 183 ------~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 255 (307)
.+. +..+...|..+..++...|++.+|..++..+......-+...|-.+.++|...|.+++|.+.|+..+..
T Consensus 400 l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~- 478 (895)
T KOG2076|consen 400 LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL- 478 (895)
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 110 122345567788899999999999999999998755557778999999999999999999999999976
Q ss_pred CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 256 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 256 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
-+.+...-..|...+.+.|+.++|.+.+..+.
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 23344556667778899999999999998875
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=3.8e-09 Score=83.58 Aligned_cols=220 Identities=9% Similarity=-0.068 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791 62 EKTIRNAEKVFDEMRVRG-IEPD--VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA 138 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 138 (307)
....+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345566777777777542 2222 456778888899999999999999999887543 678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
...|++..+.... +..++..+..++...|++++|.+.++...+.. +.+. ........+...++.++|...+.....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999886543 56777888888889999999999999998874 2332 112222234456789999999976554
Q ss_pred CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc---CC--CC-cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---GL--LP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
.. .|+...+ .+... ..|+..++ ..+..+.+. .. .| ....|..+...+.+.|+.++|...|++..+.++
T Consensus 194 ~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32 2232222 22222 34444433 344444432 11 11 235688888899999999999999999877664
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.9e-09 Score=84.88 Aligned_cols=264 Identities=9% Similarity=-0.051 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
....-.+-+...+++++..++++...+. .+++...+..-|.++...|+ -.+-..+=.++.+. .+-.+.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~----------~n~Lf~lsh~LV~~-yP~~a~ 313 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK----------SNKLFLLSHKLVDL-YPSKAL 313 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc----------cchHHHHHHHHHHh-CCCCCc
Confidence 3334455667788999999999988776 45666777777777777433 33333333444444 344566
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR 165 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (307)
+|-++.-.|.-.|+..+|.+.|.+....+.. =...|-.....|+-.|..++|...+...-+.= +-....+--+..-|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHH
Confidence 7777777777777788888887776554322 23456666677777777777776666554421 111111222333455
Q ss_pred cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCC----CCHHhHHHHHHHHHccC
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS--ELG----LDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~g 239 (307)
+.++.+.|.++|.+..... |.|+...+-+.-..-..+.+.+|...|+..... ... --..+++.|..+|.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 5666666666666665543 455555555555555556666666666554411 000 12234555566666666
Q ss_pred cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (307)
.+++|+..+++.+.. .+-|..++.++.-.|...|+++.|.+.|.+.
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666666666666554 2345555666666666666666666665553
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.2e-08 Score=85.52 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=115.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRN----G----------VSPSA--ETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
+|+.+-..|......+-..+++...... + -.|+. .++..+.+.|...|++++|+.++++.....
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht 224 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT 224 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 4555555555444455555555555432 1 12333 244666777888999999999999888874
Q ss_pred CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH-
Q 021791 185 LCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF- 263 (307)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~- 263 (307)
|..+..|..-...+-..|++++|.+.++..+..... |...-+..+..+.++|+.++|.+++......+..|-...+
T Consensus 225 --Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 225 --PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 344778888888899999999999999999887644 6666677788888999999999999988777654433221
Q ss_pred -------HHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 264 -------ETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 264 -------~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
.....+|.+.|++..|..-+..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678888888777776665543
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=1.2e-08 Score=80.75 Aligned_cols=227 Identities=11% Similarity=0.009 Sum_probs=157.4
Q ss_pred CchhhHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791 18 NRIDMAERFLGEMIERG-VEPN--VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 94 (307)
Q Consensus 18 g~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 94 (307)
+..+.++.-+.+++... ..|+ ...|..+-..+.. .|+.++|...|++..+.. +.+...|+.+...+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----------~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----------LGLRALARNDFSQALALR-PDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34456777777777542 2232 3456666666777 788899999999998874 44688999999999
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAM 174 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (307)
...|++++|...|+...+.... +..++..+...+...|++++|.+.|+...+..+ +..............+++++|.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999999987543 567888899999999999999999999988643 3222222233345678899999
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---CC--C-CCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791 175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---EL--G-LDLDSYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~ 248 (307)
..+.+..... .|+...+ .+.. ...|+...+ +.+..+.+. .. . .....|..+...+...|++++|...|
T Consensus 186 ~~l~~~~~~~--~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 186 ENLKQRYEKL--DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHhhC--CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9997765432 2332222 2222 335555443 344444321 11 1 12357889999999999999999999
Q ss_pred HHHHHcCCCCcHhhHHH
Q 021791 249 VEMIEKGLLPQKVTFET 265 (307)
Q Consensus 249 ~~~~~~~~~p~~~~~~~ 265 (307)
++.++.+ +||..-+..
T Consensus 260 ~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 260 KLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHhC-CchHHHHHH
Confidence 9999764 345444443
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5e-09 Score=83.37 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.+++.+|.+.-+...... .-+......-.......|++++|.+.|++....... .......+.-.+-..|++++|++.
T Consensus 469 gk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred ccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHH
Confidence 456777777766655332 112223323333455689999999999999887543 233333344557789999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL 221 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (307)
|-++... +..+..+...+...|....++..|++++.+.... ++.|+..++-|...|-+.|+-.+|.+..-.--.. +
T Consensus 547 f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 547 FLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 9887654 2337778888999999999999999999887655 3778999999999999999999999887665544 4
Q ss_pred CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhchhHHHHHHHHHHhhhc
Q 021791 222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 289 (307)
+-+..+...|...|....-+++++.+|++.. -+.|+..-|..++..| .++|++++|.++++.+...
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5588899999999999999999999999876 4689999999888765 6789999999999988543
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=6.9e-08 Score=80.32 Aligned_cols=264 Identities=11% Similarity=-0.024 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV 84 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (307)
.+|+.-.+.|.+.+.++-|..+|...++- .+-+...|......--. .|..++...+|++.... .+-..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~----------hgt~Esl~Allqkav~~-~pkae 584 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS----------HGTRESLEALLQKAVEQ-CPKAE 584 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHh-CCcch
Confidence 46677777788888888888888888765 33355566665544333 77788888888888877 34466
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY 164 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (307)
..|....+.+...|+...|..++....+.... +...|..-+.....+.+++.|..+|.+.... .|+...|..-+...
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 67778888888899999999999999887654 7888888899999999999999999988764 56777887777777
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791 165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 244 (307)
.-.++.++|.+++++..+.- +.-...|..+.+.+-+.++++.|.+.+..-.+. ++-.+..|-.+...=-+.|..-.|
T Consensus 662 r~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhH
Confidence 77889999999999888873 444667888888888999999999888776654 233556677777777778888999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 245 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..++++..-++ +-+...|...|+.-.+.|+.+.|..+..+..
T Consensus 739 R~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 739 RSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999887664 4466778888888899999988887765543
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=2.9e-08 Score=72.11 Aligned_cols=207 Identities=12% Similarity=0.035 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh
Q 021791 41 TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120 (307)
Q Consensus 41 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (307)
+...|--.|.. .|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|+...+.... +..
T Consensus 37 arlqLal~YL~----------~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~Gd 104 (250)
T COG3063 37 ARLQLALGYLQ----------QGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGD 104 (250)
T ss_pred HHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccc
Confidence 44556667777 788899999999999884 346778999999999999999999999999988654 788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM 199 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (307)
+.|.....+|..|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++..+.. +....+...+.+.
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~ 182 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARL 182 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHH
Confidence 99999999999999999999999998752222 34688888888899999999999999999886 5667788889999
Q ss_pred HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791 200 FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 264 (307)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 264 (307)
....|++-.|...++.....+. ++..+...-|+.--..|+.+.+-++=..+... .|.+.-+.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 9999999999999999998875 79998888888888999988888877776653 56555443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=3.2e-08 Score=83.12 Aligned_cols=259 Identities=14% Similarity=0.099 Sum_probs=181.0
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH-HH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVV-TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS-FS 88 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 88 (307)
...+...|++++|++.++.-... -+|.. ........+.+ .|+.++|..+|..+++.+ |+... |.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~k----------Lg~~~eA~~~y~~Li~rN--Pdn~~Yy~ 76 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLK----------LGRKEEAEKIYRELIDRN--PDNYDYYR 76 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence 35567889999999999876554 44554 45555566667 888999999999999984 45555 44
Q ss_pred HHHHHHHhc-----CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 89 IVLHVYSRA-----HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE-DAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 89 ~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
.+..+.... .+.+...++|+++...- |.......+.-.+.....+. .+...+..+...|++ .+|+.+-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Confidence 555554222 24677788888887653 34444433333333323333 344556666777764 46666766
Q ss_pred HHhcCCChhHHHHHHHHHhhc----C---------CCCccHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HH
Q 021791 163 EYRGRKDANGAMKLYRQMKED----D---------LCVPNIH--TYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LD 226 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 226 (307)
.|......+-...++...... + ..+|+.. ++..+.+.|-..|++++|.+.++....+. |+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence 777665555555666554322 1 1134443 44667888889999999999999999873 44 67
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
.|..-.+.+-+.|++++|.+.++...+... -|...-+-....+.+.|++++|.+++...-..+.
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 788889999999999999999999987743 3555566677788999999999999999977776
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.25 E-value=1.1e-07 Score=79.18 Aligned_cols=225 Identities=10% Similarity=0.023 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
...++.|..+|.+.... .|+..+|.--+..-.-.++.++|.+++++..+. ++.-...|..+...+-+.++.+.|...
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555555554432 444555544444444455555555555555544 111233444444555555555555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE- 220 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 220 (307)
|..=.+. ++-.+..|..+...--+.|++-+|..+++.....+ +.+...|-..|++=.+.|..+.|..++.+..+.-
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5443332 22244556666666666677777777777776665 5677777777777777777777777766554421
Q ss_pred ----------------------------CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791 221 ----------------------------LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272 (307)
Q Consensus 221 ----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 272 (307)
+.-|.+..-.+...|-...++++|.+.|.+..+.+ +-+..+|..+...+.+
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR 863 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence 11144444555555666666777777777766543 2234566666666667
Q ss_pred chhHHHHHHHHHHhhhcCCCC
Q 021791 273 SDMLRTWRRLKKKLDEESITF 293 (307)
Q Consensus 273 ~g~~~~a~~~~~~~~~~~~~~ 293 (307)
+|.-+.-.+++.+......+.
T Consensus 864 hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred hCCHHHHHHHHHHHhccCCCC
Confidence 776666666666665444433
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.6e-08 Score=83.33 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCChHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC--PTVATYTSVVKCLCSCGRIEDAE 139 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~ 139 (307)
...+..+..++...-... +-++...+.|...|.-.|++..++++...+...... .-...|-.+.++|-..|++++|.
T Consensus 249 ~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred hHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 345566666666665543 447778888999999999999999999888766321 12345778999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----cHHHHHHHHHH
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN----RMDMVREIWNH 215 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 215 (307)
..|.+..+....-..-.+-.+.+.|.+.|+.+.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 999888876433224455677888999999999999999999885 667888888888888775 56777777777
Q ss_pred HhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH----HcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 216 VKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI----EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
....- +-|...|-.+...+-.. +...++.+|.... ..+-.+.+...+.+.......|++++|...+......
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 77664 33777888887777654 4444477777654 3455677888999999999999999999999887655
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-08 Score=82.25 Aligned_cols=254 Identities=9% Similarity=-0.018 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP 82 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 82 (307)
+...+-.=|.++...|+..+-..+=.++.+. .+-...+|-++-.-|.- .++..+|.+.|.+..... +.
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~----------i~k~seARry~SKat~lD-~~ 344 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM----------IGKYSEARRYFSKATTLD-PT 344 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH----------hcCcHHHHHHHHHHhhcC-cc
Confidence 3344555677888889988888888888776 34456788888887777 778899999998876543 11
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
=...|..+...|+-.|..+.|+..|...-+. ++-...-+--+..-|.+.++.+.|.+.|.+.....+. |+...+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhh
Confidence 3457999999999999999999999887665 1223333445667788999999999999999876443 7778888887
Q ss_pred HHhcCCChhHHHHHHHHHhhcC----CCC-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791 163 EYRGRKDANGAMKLYRQMKEDD----LCV-PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE 237 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (307)
.....+.+.+|..+|......- ... .-..+++.|..+|.+.+.+++|+..++...... +.+..++..+.-.|..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHL 501 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHH
Confidence 7788899999999998876221 001 134568999999999999999999999998875 3489999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 273 (307)
.|+++.|++.|.+.+ .+.|+..+...++..+...
T Consensus 502 lgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 999999999999988 5789988777777655443
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.2e-08 Score=81.77 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=162.7
Q ss_pred HHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 021791 13 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 92 (307)
Q Consensus 13 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 92 (307)
.+.-.|+...|.+-|+..++....++. .|--+-..|.. ..+-++..+.|+...+.+ +-|+.+|..-.+
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d----------~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQ 402 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYAD----------ENQSEKMWKDFNKAEDLD-PENPDVYYHRGQ 402 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhh----------hhccHHHHHHHHHHHhcC-CCCCchhHhHHH
Confidence 344568888888888888876433332 25555566777 777788888888887765 336677777777
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG 172 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (307)
...-.++++.|..=|++.+..... +...|-.+.-+..+.+.+++++..|++.+.. ++-.+..|+.....+...++++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH
Confidence 777888888888888888877543 6667777777777888899999999988876 44467888888888999999999
Q ss_pred HHHHHHHHhhcCCC------CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791 173 AMKLYRQMKEDDLC------VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ 246 (307)
Q Consensus 173 a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 246 (307)
|.+.|+...+.... .+.+.+--.++..- -.+++..|..++....+...+ ....|..|...-.+.|+.++|++
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 99998887765320 11111112222221 347888899998888876533 55678888888888999999999
Q ss_pred HHHHHHH
Q 021791 247 YFVEMIE 253 (307)
Q Consensus 247 ~~~~~~~ 253 (307)
+|++...
T Consensus 559 lFEksa~ 565 (606)
T KOG0547|consen 559 LFEKSAQ 565 (606)
T ss_pred HHHHHHH
Confidence 9988754
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=5.1e-07 Score=72.59 Aligned_cols=281 Identities=11% Similarity=0.059 Sum_probs=159.7
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh--------------------
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------------------- 61 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------------------- 61 (307)
|+...|++.|..=.+-+.++.|..+|+..+-. .|++.+|--..+.=.+.|....+..+
T Consensus 172 P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfva 249 (677)
T KOG1915|consen 172 PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVA 249 (677)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 78888899998888888889999998888764 47777776655555553332222111
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCchhHHHH--------HHHHHHcCCCCchhhHHH
Q 021791 62 -------EKTIRNAEKVFDEMRVRGIEPD--VTSFSIVLHVYSRAHKPQLSLDK--------LNFMKEKGICPTVATYTS 124 (307)
Q Consensus 62 -------~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ 124 (307)
++.++.|.-+|+-.++. ++.+ ...|..+...=-+-|+.....+. |+.+.+.+ +.|-.+|--
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfd 327 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHH
Confidence 23333344444333332 1111 12222222222223333222222 11222221 224445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-------------------------------------------CCHhhHHHH-
Q 021791 125 VVKCLCSCGRIEDAEELLGEMVRNGVS-------------------------------------------PSAETYNCF- 160 (307)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------------~~~~~~~~l- 160 (307)
.+..-...|+.+...++|++.+..-++ -...||..+
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiW 407 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIW 407 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 555555555555555555555543111 112222211
Q ss_pred ---HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791 161 ---FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE 237 (307)
Q Consensus 161 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (307)
...-.++.+...|.+++...... .|-..+|...|..=.+.+++|.+.++++.....+.. +..+|......=..
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHH
Confidence 22223445555555555554433 566667777777777778888888888888877533 66777777777778
Q ss_pred cCcHHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 238 KQKWKEACQYFVEMIEKGL-LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
.|+.+.|..+|.-.+++.. ......+...|+--...|.++.|+.+++.+.+..
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8888888888888876632 2223456666776677888888888888876554
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=1.5e-09 Score=84.74 Aligned_cols=251 Identities=13% Similarity=0.072 Sum_probs=149.2
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 91 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 91 (307)
+-+.-.|++..++.-.+ ........+......+.+++.. .|+++. ++.++.... .|.......+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iA----------lg~~~~---vl~ei~~~~-~~~l~av~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIA----------LGQYDS---VLSEIKKSS-SPELQAVRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHH----------TT-HHH---HHHHS-TTS-SCCCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHH----------cCChhH---HHHHhccCC-ChhHHHHHHHH
Confidence 44455678888776555 2222222234455566666766 444443 333433333 56666665555
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGIC-PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
..+...++-+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.+++
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~ 147 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRP 147 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH
Confidence 4444334444444444443333222 22333333335566778888888777542 3567777788888888888
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ 246 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 246 (307)
+.|.+.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+
T Consensus 148 dlA~k~l~~~~~~~---eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 148 DLAEKELKNMQQID---ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HHHHHHHHHHHCCS---CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhcC---Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 88888888887653 23 344445554443 33688888888887765 45678888888888888888888888
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhchhH-HHHHHHHHHhhhc
Q 021791 247 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEE 289 (307)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 289 (307)
++.+..+.+ +-++.++..++.+....|+. +.+.+.+.+++..
T Consensus 223 ~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888877653 33566777777777777776 6677777777654
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-07 Score=74.98 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=161.0
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
|+.....+...+...|+.++|+..|++.... .|... .|..|+. + .|++++...+...+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---~----------eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---Q----------EGGCEQDSALMDYLFAK 295 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH---h----------ccCHhhHHHHHHHHHhh
Confidence 3444455555555566666666666555443 22211 2222221 2 33444444444444332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791 79 GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN 158 (307)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (307)
. +-....|-.-+.......+++.|+.+-++.++.... +...+-.-...+...+++++|.-.|...+...+ -+...|.
T Consensus 296 ~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~ 372 (564)
T KOG1174|consen 296 V-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYR 372 (564)
T ss_pred h-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHH
Confidence 1 113333444444445556666777776666665432 455555555667778888888888887766432 2667888
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH-HHHHh-cCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHH
Q 021791 159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI-GMFMA-LNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGL 235 (307)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 235 (307)
.|+.+|...|.+.+|.-+-+...+.- +.+..+.+.+. ..|.- ...-++|.++++..... .|+ ....+.+.+.+
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHH
Confidence 88888888888888877776665542 44555555542 22222 22346677777776654 344 44677788888
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
...|..+.++.++++.+. ..||....+.|.+.+...+.++++.+.|.....
T Consensus 449 ~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 889999999999998885 478888888888888888888888887766543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=9.9e-07 Score=72.24 Aligned_cols=273 Identities=7% Similarity=-0.052 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCC-CCcHHHHHHH-HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVL-LNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
+..|..+...+...|+.+.+.+.+....+... .++......+ ...+.. .+++++|.+.+++..+.. +
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----------~g~~~~A~~~~~~~l~~~-P 74 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI----------AGDLPKALALLEQLLDDY-P 74 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC-C
Confidence 45566677777778888888777777655421 2233222222 112233 678899999999988763 3
Q ss_pred CCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 82 PDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPT-VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
.+...+.. ...+.. .+....+.+.+... ....|+ ......+...+...|++++|...+++..+.... +...
T Consensus 75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~ 150 (355)
T cd05804 75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWA 150 (355)
T ss_pred CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHH
Confidence 34444442 223333 34445555555441 112223 344456667888999999999999999987543 5677
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH--HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC-CCCHHhH-H--H
Q 021791 157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI--HTYNILIGMFMALNRMDMVREIWNHVKGSEL-GLDLDSY-T--M 230 (307)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ 230 (307)
+..+...+...|++++|...+.+........++. ..|..+...+...|++++|..+++....... .+..... + .
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAAS 230 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHH
Confidence 8888899999999999999999988764212332 3455788889999999999999999864432 1122111 1 2
Q ss_pred HHHHHHccCcHHHHHHH--HHHHHHcCC--CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 231 LIHGLCEKQKWKEACQY--FVEMIEKGL--LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 231 li~~~~~~g~~~~a~~~--~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
++.-+...|....+..+ +........ ............++...|+.+.|...++.+.....
T Consensus 231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 23333344432222222 111111111 11112223466678889999999999998866443
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1.9e-06 Score=69.43 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|++..|.++|++-.+. .|+...|++.++.=.+...++.|..+|+...-. .|+..+|-.....--+.|+...|..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66777788888877765 788888888888888888888888888887754 47888888888888888888888888
Q ss_pred HHHHHhC-CC-CCCHhhHHHHHHHHhcCCChhHHHHHHHHH---------------------------------------
Q 021791 142 LGEMVRN-GV-SPSAETYNCFFKEYRGRKDANGAMKLYRQM--------------------------------------- 180 (307)
Q Consensus 142 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------------------------------- 180 (307)
|+...+. |- .-+...+.++...-.++..++.|.-+|.-.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 8887653 10 001122222222222233333333322221
Q ss_pred -----hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-------------------------------
Q 021791 181 -----KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD------------------------------- 224 (307)
Q Consensus 181 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------- 224 (307)
...+ +-|..+|-..++.-...|+.+...++++..... ++|-
T Consensus 310 qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 310 QYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1111 345555555555555666666666666666553 2221
Q ss_pred -------------HHhHH----HHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 225 -------------LDSYT----MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 225 -------------~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..||. ....--.++.+...|.+++...+ |..|...+|...|..-.+.++++.++.++++..
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111 11112234445555555555554 567777777777777777777888888777776
Q ss_pred hcC
Q 021791 288 EES 290 (307)
Q Consensus 288 ~~~ 290 (307)
+.+
T Consensus 465 e~~ 467 (677)
T KOG1915|consen 465 EFS 467 (677)
T ss_pred hcC
Confidence 554
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=7.7e-07 Score=72.88 Aligned_cols=270 Identities=8% Similarity=-0.050 Sum_probs=166.1
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 90 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 90 (307)
...+...|++++|.+.+++..+.. +.+...+.. ...+...|.. .+....+.+.+... ....+........+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 120 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF------SGMRDHVARVLPLW-APENPDYWYLLGML 120 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc------ccCchhHHHHHhcc-CcCCCCcHHHHHHH
Confidence 345667899999999999988762 223334432 2233333322 23334455555441 11122233455566
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--hhHHHHHHHHhcC
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSA--ETYNCFFKEYRGR 167 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~ 167 (307)
...+...|++++|...+++..+.... +...+..+...+...|++++|...+++....... |+. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 77888999999999999999987533 6777888999999999999999999998875322 222 3455788889999
Q ss_pred CChhHHHHHHHHHhhcCCCCccHHHH-H--HHHHHHHhcCcHHHHHHH---HHHHhhCCC-CCCHHhHHHHHHHHHccCc
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIHTY-N--ILIGMFMALNRMDMVREI---WNHVKGSEL-GLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 240 (307)
|++++|..++++........+..... + .++.-+...|..+.+.+. ......... ............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 99999999999986443111222211 1 223333334433322222 111111100 1111222356677788999
Q ss_pred HHHHHHHHHHHHHcCCC------CcHhhHHHHH--HHHhhchhHHHHHHHHHHhhhcC
Q 021791 241 WKEACQYFVEMIEKGLL------PQKVTFETLY--RGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 241 ~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
.++|...++.+...... ....+-..++ -++...|+.++|.+.+.......
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999998764222 0111222233 34668999999999988776544
No 77
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=1.2e-06 Score=69.60 Aligned_cols=214 Identities=11% Similarity=0.060 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhhHH-HHHHHHHHHHHHHhcCCCCC
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERFEK-TIRNAEKVFDEMRVRGIEPD 83 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 83 (307)
+++.+-..+...++.++|+.+.+++++. .|+ ..+|+..-.++.. .+ .+++++..++++.+... .+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~----------L~~~l~eeL~~~~~~i~~np-kn 105 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEA----------LDADLEEELDFAEDVAEDNP-KN 105 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHH----------cchhHHHHHHHHHHHHHHCC-cc
Confidence 4555566667778899999999998876 343 3456555555555 44 57889999988887743 35
Q ss_pred HHHHHHHHHHHHhcCCc--hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 84 VTSFSIVLHVYSRAHKP--QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
..+|+.-...+.+.|+. ++++.+++.+.+.... +..+|+.....+...|+++++++.++++++.++. +...|+...
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 56677666566666653 6678888888877654 7888888888888889999999999999887765 666776665
Q ss_pred HHHhcC---CCh----hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc----CcHHHHHHHHHHHhhCCCCCCHHhHHH
Q 021791 162 KEYRGR---KDA----NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL----NRMDMVREIWNHVKGSELGLDLDSYTM 230 (307)
Q Consensus 162 ~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (307)
..+.+. |.. ++.+....+..... +-|...|+.+...+... +...+|.+.+.+....++ .+......
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~ 260 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSD 260 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHH
Confidence 555443 222 45666666666654 66777888777777663 344567777777665432 25666777
Q ss_pred HHHHHHc
Q 021791 231 LIHGLCE 237 (307)
Q Consensus 231 li~~~~~ 237 (307)
|+..|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 7777764
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=5.7e-07 Score=80.95 Aligned_cols=234 Identities=10% Similarity=0.060 Sum_probs=185.0
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 021791 38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-----VTSFSIVLHVYSRAHKPQLSLDKLNFMKE 112 (307)
Q Consensus 38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (307)
+...|-..|..... .+++++|.++.++.... +.+. .-.|.++++.-...|.-+...++|+++.+
T Consensus 1457 SSi~WI~YMaf~Le----------lsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLE----------LSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred cchHHHHHHHHHhh----------hhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 45678888888888 88999999999998765 3222 23677888877788888899999999988
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH
Q 021791 113 KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT 192 (307)
Q Consensus 113 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (307)
.. .....|..|...|.+.+.+++|-++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-.-.-....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 73 24557889999999999999999999999876 2347789999999999999999999999998876310113445
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh--hHHHHHHHH
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLYRGL 270 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~ 270 (307)
..-.++.-.+.|+.+.++.+|+...... +.-...|+.+|+.-.++|+.+.+..+|++.+..++.|-.. .|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 5556666678999999999999988763 3367789999999999999999999999999998877653 466666666
Q ss_pred hhchhHHHHHHHHHHh
Q 021791 271 IQSDMLRTWRRLKKKL 286 (307)
Q Consensus 271 ~~~g~~~~a~~~~~~~ 286 (307)
.+.|+-+.++.+-.+.
T Consensus 1682 k~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HhcCchhhHHHHHHHH
Confidence 6667766666555444
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=3.4e-08 Score=77.31 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=146.1
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC-CCHHH
Q 021791 8 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE-PDVTS 86 (307)
Q Consensus 8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 86 (307)
--+.+++...|+++.++ .++.... .|.......+...+.. .++-+.+..-+++....+.. .+...
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~----------~~~~e~~l~~l~~~~~~~~~~~~~~~ 104 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS----------PSDKESALEELKELLADQAGESNEIV 104 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT----------STTHHCHHHHHHHCCCTS---CHHHH
T ss_pred HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHhccccccHHH
Confidence 34667777777766433 4443333 6666665555443332 12234444444444433333 23333
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH----
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK---- 162 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---- 162 (307)
.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~ 175 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHH
Confidence 333445566789999999888642 366777888999999999999999999998763 23 33333433
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH-
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW- 241 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 241 (307)
.....+.+.+|..+|+++.... ++++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+.
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TC
T ss_pred HHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCCh
Confidence 3344557999999999998764 688899999999999999999999999998876533 677777788888888887
Q ss_pred HHHHHHHHHHHHc
Q 021791 242 KEACQYFVEMIEK 254 (307)
Q Consensus 242 ~~a~~~~~~~~~~ 254 (307)
+.+.+++.++.+.
T Consensus 253 ~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 253 EAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHh
Confidence 6778888888765
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.1e-07 Score=76.28 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=184.8
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 91 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 91 (307)
.-+.+.|++.+|.=.|+..++.+ +-+...|.-|-..... .++-..|+..+.+..+.. +-|....-.|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaE----------NE~E~~ai~AL~rcl~Ld-P~NleaLmaLA 360 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAE----------NENEQNAISALRRCLELD-PTNLEALMALA 360 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhh----------ccchHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 34678899999999999988873 2367788888887777 666778888898888874 33677788888
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCC--------chhhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHhhHHHHHH
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGICP--------TVATYTSVVKCLCSCGRIEDAEELLGEMV-RNGVSPSAETYNCFFK 162 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 162 (307)
-.|...|.-..|++.++..+...++- +...-.. ..+.....+....++|-++. ..+..+|+.+...|.-
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 89999999999999998886653210 0000000 12222334445556665555 4454578899999999
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHccCcH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 241 (307)
.|.-.|++++|.+.|+...... +-|..+||.|...++...+.++|+..+.+..+. .|+ +++.-.|.-+|...|.+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence 9999999999999999999886 778999999999999999999999999999986 454 44555566678999999
Q ss_pred HHHHHHHHHHHHc---------CCCCcHhhHHHHHHHHhhchhHHHHHHH
Q 021791 242 KEACQYFVEMIEK---------GLLPQKVTFETLYRGLIQSDMLRTWRRL 282 (307)
Q Consensus 242 ~~a~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 282 (307)
++|.+.|-..+.. +..++...|..|=.++...++.|.+.++
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999998876543 1122334566665566666665544433
No 81
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=9.6e-08 Score=80.32 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +||+..|..+.+......-+++|.++
T Consensus 411 lGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 411 LGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred cchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 677788888887754 4667888999999999999999888874 68999999999888888888899988
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL 221 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (307)
.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.|........
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 8776432 11122222344789999999999888876 56677888888888899999999999999887642
Q ss_pred CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|...+....+.|.+++|.+.+.++....
T Consensus 551 d-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 551 D-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred C-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 2 56789999999999999999999999999887 4455567777777889999999999998875543
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=7e-07 Score=66.10 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=118.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
+..|...|+++.+....+.+.. |. ..+...++.+++...++.....+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467788888876544422211 11 1222366778888888888776544 888999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HhcCc--HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMF-MALNR--MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY 247 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 247 (307)
++|...+++..... +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999886 56788888888864 67677 59999999999988644 778888888999999999999999
Q ss_pred HHHHHHcCCCCcHhhH
Q 021791 248 FVEMIEKGLLPQKVTF 263 (307)
Q Consensus 248 ~~~~~~~~~~p~~~~~ 263 (307)
|+++++. .+|+..-+
T Consensus 167 ~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHhh-CCCCccHH
Confidence 9999886 35555443
No 83
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=3.4e-06 Score=67.10 Aligned_cols=218 Identities=10% Similarity=-0.010 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh--HHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI--EDA 138 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a 138 (307)
.+..++|+.+.+++++.. +-+..+|+.--.++...| ++++++..++.+.+...+ +..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 556688999999888763 224456776666777777 579999999999887654 666777665556666653 678
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc---CcH----HHHHH
Q 021791 139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL---NRM----DMVRE 211 (307)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~ 211 (307)
...++++.+.+.+ +..+|+....++...|+++++++.+.++.+.+ +.|..+|+.....+.+. |.. +....
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 8899899887665 88899998889999999999999999999987 56777887776666554 222 45666
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHcc----CcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhch-------------
Q 021791 212 IWNHVKGSELGLDLDSYTMLIHGLCEK----QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD------------- 274 (307)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 274 (307)
....+...... |...|+.+...+... ++..+|...+.+..+.+ ..++.....|+..|....
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66666665433 677888887777763 34567888888877643 345667788888887532
Q ss_pred -----hHHHHHHHHHHh
Q 021791 275 -----MLRTWRRLKKKL 286 (307)
Q Consensus 275 -----~~~~a~~~~~~~ 286 (307)
..++|..++..+
T Consensus 283 ~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 283 AEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccHHHHHHHHHHH
Confidence 346788888887
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=4.6e-07 Score=69.55 Aligned_cols=188 Identities=7% Similarity=-0.015 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC-P-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA--ETY 157 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 157 (307)
.....+..+...+...|+++.|...++++...... | ...++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667777777888888888888888888765321 1 1245677778888888888888888888775432111 134
Q ss_pred HHHHHHHhcC--------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791 158 NCFFKEYRGR--------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT 229 (307)
Q Consensus 158 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (307)
..+..++... |++++|.+.++.+.... +.+...+..+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 4445555543 66777888888887764 223233322221111 0000 0 00112
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcC--CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 230 MLIHGLCEKQKWKEACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 230 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
.+...+.+.|++.+|...+++.++.. -+.....+..+..++...|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566788899999999999988762 1123457788889999999999999988887654
No 85
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.7e-09 Score=53.93 Aligned_cols=31 Identities=39% Similarity=0.760 Sum_probs=13.5
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 021791 115 ICPTVATYTSVVKCLCSCGRIEDAEELLGEM 145 (307)
Q Consensus 115 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 145 (307)
+.||..||++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=3.3e-07 Score=77.25 Aligned_cols=214 Identities=9% Similarity=0.068 Sum_probs=165.1
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 88 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 88 (307)
.+...+...|-...|..+|+++. .|..++.+|.. .|+..+|..+..+..+. +||...|.
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~----------lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLL----------LGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHH----------hcccchHHHHHHHHhcC--CCcchhHH
Confidence 45667778888888988888764 46667778888 66677888888777774 78888888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK 168 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (307)
.+.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+. ....+|-.+.-+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHh
Confidence 8888877777778888887665332 222222333447889999999988776543 25678888888888889
Q ss_pred ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791 169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 248 (307)
++..+.+.|....... +.+...|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+-|.+++|++.+
T Consensus 534 k~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999998887765 5677889999999999999999999999998887 336667777788888899999999999
Q ss_pred HHHHHc
Q 021791 249 VEMIEK 254 (307)
Q Consensus 249 ~~~~~~ 254 (307)
.++.+.
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 888654
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=3.6e-06 Score=76.07 Aligned_cols=231 Identities=15% Similarity=0.108 Sum_probs=177.4
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhc-CCCCcHH---HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVV---TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
+...|-..|....+.++.++|.+++++.+.. ++.-... .|.+++..-.. .|.-+...++|+++.+.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~----------yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA----------YGTEESLKKVFERACQY 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh----------hCcHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999875 3322222 34444443333 45557788899998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhH
Q 021791 79 GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETY 157 (307)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 157 (307)
.-.-.+|..|...|.+.+..++|-++++.|.+.= .-....|...+..+.+.++-+.|.+++.+..+.-++- .....
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 2234578899999999999999999999998762 2477899999999999999999999999988753221 23455
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHH
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGL 235 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~ 235 (307)
...++.-.+.|+.+.+..+|+...... |--...|+..++.-.++|+.+.++.+|+++...++.|-. ..|...++.=
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 666777789999999999999999885 556789999999999999999999999999998876543 2456666655
Q ss_pred HccCcHHHHHHHH
Q 021791 236 CEKQKWKEACQYF 248 (307)
Q Consensus 236 ~~~g~~~~a~~~~ 248 (307)
-+.|+-+.+..+=
T Consensus 1682 k~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVK 1694 (1710)
T ss_pred HhcCchhhHHHHH
Confidence 5566655444443
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=1.2e-06 Score=67.34 Aligned_cols=172 Identities=8% Similarity=-0.065 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch--hhHHHHHHHHHhc----
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDV---TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV--ATYTSVVKCLCSC---- 132 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~---- 132 (307)
.+++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+....... .++..+..++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 578899999999988763 2222 46778889999999999999999999887432111 2455566666654
Q ss_pred ----CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791 133 ----GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM 208 (307)
Q Consensus 133 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (307)
|+.++|.+.++.+....+. +...+..+.... .+... . ......+...+.+.|++++
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~--------------~~~~~----~-~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD--------------YLRNR----L-AGKELYVARFYLKRGAYVA 184 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH--------------HHHHH----H-HHHHHHHHHHHHHcCChHH
Confidence 7889999999999876332 222332222111 00000 0 0112245667888999999
Q ss_pred HHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 209 VREIWNHVKGSEL--GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 209 a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999887532 123567889999999999999999998888754
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3.8e-09 Score=53.39 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=15.9
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555555444
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=2.1e-06 Score=63.90 Aligned_cols=155 Identities=15% Similarity=-0.004 Sum_probs=70.5
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
+-..+...|+-+....+........ ..|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3334444444444444443332221 1133333334444555555555555555544432 2344555555555555555
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV 249 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 249 (307)
+++|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555554443 233344444444444455555555555544443221 44444444444455555555554443
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.85 E-value=1.3e-05 Score=67.14 Aligned_cols=276 Identities=12% Similarity=0.174 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC------------CcchhhHHHHHHHHHHH
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------HPNERFEKTIRNAEKVF 72 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~------------~~~~~~~~~~~~a~~~~ 72 (307)
..|..|.+.|.+.|++++|.++|++.... ..++.-|..+..+|+.-... .......-+++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46899999999999999999999998876 34666677777776652110 00000122233333344
Q ss_pred HHHHhcCC-----------CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC------chhhHHHHHHHHHhcCCh
Q 021791 73 DEMRVRGI-----------EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP------TVATYTSVVKCLCSCGRI 135 (307)
Q Consensus 73 ~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 135 (307)
+.+..... +-++..|..-.. ...|+..+....|.+..+. +.| -...|..+...|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 44333210 112222222221 2245556666666666543 111 123456666677777777
Q ss_pred HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----------CCc------cHHHHHHH
Q 021791 136 EDAEELLGEMVRNGVSPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----------CVP------NIHTYNIL 196 (307)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l 196 (307)
+.|..+|++..+...+-- ..+|......-.++.+++.|+++.+....... .++ +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 777777777665433211 23555555555666666666666655432211 011 22344444
Q ss_pred HHHHHhcCcHHHHHHHHHHHhhCCC----------------------------------CCCH-HhHHHHHHHHHc---c
Q 021791 197 IGMFMALNRMDMVREIWNHVKGSEL----------------------------------GLDL-DSYTMLIHGLCE---K 238 (307)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------~~~~-~~~~~li~~~~~---~ 238 (307)
++.--..|-++....+++.+....+ .|+. ..|+..+.-+.+ .
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 5554555555555555555543322 1222 345555555443 2
Q ss_pred CcHHHHHHHHHHHHHcCCCCcHh-hHHHHH-HHHhhchhHHHHHHHHHHh
Q 021791 239 QKWKEACQYFVEMIEKGLLPQKV-TFETLY-RGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~-~~~~~~g~~~~a~~~~~~~ 286 (307)
...+.|..+|++.++ |.+|... |+-.+. ..=.+.|....|..++++.
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357888888888888 5655443 222222 2223457777788887774
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=6.4e-06 Score=72.18 Aligned_cols=133 Identities=7% Similarity=0.035 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI 197 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 197 (307)
+...+..|.....+.|..++|+.+++...+..+. +......+...+.+.+++++|...+++..... +.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 3444444445555555555555555554443211 23334444444455555555555555554443 33344444444
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
.++.+.|++++|..+|+++...+. -+..++..+..++-..|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555555555555444211 12444444444444555555555555554443
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=3.3e-06 Score=74.90 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHH-HHHhhCCCCcchhh--------HHHHHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN-GVCRRASLHPNERF--------EKTIRNAEKVFD 73 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~~~~~--------~~~~~~a~~~~~ 73 (307)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+.. .+.+.++...+..+ ..++.-...+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 5678889999999999999999999977665 455443332222 34442222111110 111222222222
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 021791 74 EMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS 153 (307)
Q Consensus 74 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (307)
.+... .-+...+-.+..+|-+.|+.+++..+|+++.+.... |+.+.|.+...|... ++++|++++.+....
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 23222 123345666777777778888888888888877633 777778888888777 888888777776553
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791 154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDD------------------LCVPNIHTYNILIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (307)
+...+++..+..+|.++.... ...--..++-.+...|-..++++++..+++.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 333334444444444444332 1122223334444555555666666666666
Q ss_pred HhhCCCCCCHHhHHHHHHHHH
Q 021791 216 VKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~ 236 (307)
+.+.... |.....-++.+|.
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH
Confidence 6655432 4445555555554
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=3.1e-06 Score=62.68 Aligned_cols=118 Identities=8% Similarity=0.096 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHH-HhcCC--hHHHHH
Q 021791 64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCL-CSCGR--IEDAEE 140 (307)
Q Consensus 64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~ 140 (307)
+.+++...++...+.. +.|...|..+...|...|+++.|...|+...+.... +...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444432 335555556666666666666666666655555432 444555555442 44444 355666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 141 LLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
++++..+.+.. +..++..+...+...|++++|...|+++.+..
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66665555433 44555555555555666666666666655554
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=7e-06 Score=61.16 Aligned_cols=162 Identities=11% Similarity=0.042 Sum_probs=132.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI 197 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 197 (307)
|... ..+-..+...|+-+....+......... .|.......+....+.|++..|...+++..... ++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHH
Confidence 4444 6677778888888888888877655433 366677778899999999999999999998886 89999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 277 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 277 (307)
-+|.+.|+.+.|..-+.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999998886433 66778888888888999999999999888764 236667777888888999999
Q ss_pred HHHHHHHH
Q 021791 278 TWRRLKKK 285 (307)
Q Consensus 278 ~a~~~~~~ 285 (307)
+|+.+...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 99887654
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1e-06 Score=72.46 Aligned_cols=218 Identities=10% Similarity=0.047 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|++.+|.-.|+..++.. +-+...|.-|...-...++-..|+..+.+..+.... +....-.|.-.|...|.-.+|...
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHH
Confidence 566888888898888774 347788999998999999989999999999888644 677788888889999999999988
Q ss_pred HHHHHhCCCC--------CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791 142 LGEMVRNGVS--------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW 213 (307)
Q Consensus 142 ~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (307)
++.-+...++ ++...-.. ..+.....+....++|-++.......+|+.+...|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8876554211 00000000 1222333445556666666555432578889999999999999999999999
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791 214 NHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (307)
+........ |...||.|-..++...+.++|+..|++.++. +|+- .+...|.-+|...|.+++|...|=..
T Consensus 454 ~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999987533 7888999999999999999999999999964 6764 35566777899999999998876543
No 97
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.1e-05 Score=58.88 Aligned_cols=249 Identities=9% Similarity=-0.010 Sum_probs=127.7
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 90 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 90 (307)
++-+.-.|.+..++..-....... -+...-..+-++|...|+... ...+.... -.|....+..+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~-------------~~~eI~~~-~~~~lqAvr~~ 78 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQI-------------VISEIKEG-KATPLQAVRLL 78 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccc-------------cccccccc-cCChHHHHHHH
Confidence 344445677776666555443331 234444445556666443211 11122211 12333333333
Q ss_pred HHHHHhcCCchh-HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 91 LHVYSRAHKPQL-SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 91 l~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
......-++.+. ..++.+.+.......+......-...|.+.|++++|++..+... +......=+..+.+..+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence 333333333222 22333444443333333333344455667777777777665521 22333333444556666
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC 245 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 245 (307)
.+-|...++.|..- .+..|.+.|.+++.+ .+.+..|.-+|+++.++ ..|+..+.+....++...|++++|.
T Consensus 153 ~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 77777777777653 345566666665553 24566777777777764 3567777777777777777777777
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhchhH-HHHHHHHHHhh
Q 021791 246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLD 287 (307)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 287 (307)
.+++..+++. .-++.+...++..-...|.- +-..+.+..++
T Consensus 228 ~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 228 SLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777777653 23455555555444444433 33334444443
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=1.3e-06 Score=61.24 Aligned_cols=96 Identities=5% Similarity=-0.116 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG 166 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (307)
+..+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+.....+.. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 444555666666666666666666655432 5566666666666666666666666666665432 55666666666666
Q ss_pred CCChhHHHHHHHHHhhcC
Q 021791 167 RKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~ 184 (307)
.|++++|...|+......
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666666553
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=1.9e-06 Score=60.37 Aligned_cols=95 Identities=12% Similarity=-0.067 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791 157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (307)
+......+...|++++|...|....... +.+...+..+..++...|++++|...|+.....+. .+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3344555666666666766666666654 45666666666666677777777777776666532 25566666666666
Q ss_pred ccCcHHHHHHHHHHHHHc
Q 021791 237 EKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~ 254 (307)
..|++++|+..|+..++.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 677777777777766654
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=1.9e-05 Score=69.33 Aligned_cols=148 Identities=11% Similarity=0.019 Sum_probs=119.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791 80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC 159 (307)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (307)
+..+...+-.|.....+.|..++|..+++...+.... +......+...+.+.+++++|+...++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4556888888889999999999999999999887433 5667778888899999999999999999887554 6677778
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLI 232 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (307)
+..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888899999999999999998843 5568888999999999999999999998887652 33445555443
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-05 Score=63.82 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791 80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC 159 (307)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (307)
++-|......+.+.+...|+.+.|+..|+.....+.. +........-.+.+.|+.++...+...+....- -+...|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 5667778889999999999999999999988765321 233333344445667777777777666654321 13333433
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
-.......++++.|+.+-++..+.+ +.+...|-.-...+...++.++|.-.|+...... +-+...|..++.+|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 4444556677777777777777665 4555556555566677788888887777777652 236677888888888888
Q ss_pred cHHHHHHHHHHHHH
Q 021791 240 KWKEACQYFVEMIE 253 (307)
Q Consensus 240 ~~~~a~~~~~~~~~ 253 (307)
++++|..+-+...+
T Consensus 383 ~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 383 RFKEANALANWTIR 396 (564)
T ss_pred hHHHHHHHHHHHHH
Confidence 88877776665544
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.5e-06 Score=66.00 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-HH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC-FF 161 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~ 161 (307)
...-+.+.+..+.+..++..+++++..-.+...+ +....+.+..+|.+..++..|-..++++... .|...-|.. -.
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 3344666777777888889999998887776433 7777888899999999999999999998775 344444432 34
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
+.+.+.+.+..|+++...|.... ..-..+...-.......+++..+..++++....| +..+.+.......+.|++
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 56678888999999998887642 1111111111122235678888888888776543 444444444455688999
Q ss_pred HHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccC
Q 021791 242 KEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 298 (307)
Q Consensus 242 ~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (307)
++|.+-|+...+- |..| ...|+. .-+..+.|+++.|.+...++.+.|+.-.+++.
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 9999999998876 4443 344553 44567788999999999999999988777764
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.68 E-value=5.5e-05 Score=63.58 Aligned_cols=110 Identities=7% Similarity=0.039 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----------CCC
Q 021791 191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----------GLL 257 (307)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~ 257 (307)
..|..+...|-..|+++.|+.+|++..+-..+-- ..+|....+.=.++.+++.|++++++.... |..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3467777888888999999999998887644322 234555556666778888888888776432 111
Q ss_pred C-------cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791 258 P-------QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300 (307)
Q Consensus 258 p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (307)
| +...|..+++.-...|-++..+.+++++.+..+..+....||
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 223455566666677888888888888887776655544443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=9.8e-05 Score=68.41 Aligned_cols=270 Identities=10% Similarity=-0.007 Sum_probs=171.8
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----CC-C
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----GI-E 81 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 81 (307)
...+...|+++.|...+++....-...+. ...+.+...+.. .|++++|...+++.... |. .
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----------~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----------KGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHhhhcchH
Confidence 34556789999999999988763111121 233344444445 67788888888777543 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC--P-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG--VSP 152 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 152 (307)
+...++..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 12234566677888999999999998876543 221 1 22334455666778899999999998875431 112
Q ss_pred --CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH-----HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH
Q 021791 153 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY-----NILIGMFMALNRMDMVREIWNHVKGSELGLDL 225 (307)
Q Consensus 153 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (307)
....+..+...+...|++++|.+.+.+.............+ ...+..+...|+.+.|...+............
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 23344556667888999999999998875431101111111 11224455688999999998776543211111
Q ss_pred ---HhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 226 ---DSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 226 ---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
..+..+..++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11345667788899999999999988764 33222 2355666778889999999999888876544
No 105
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=0.00018 Score=61.67 Aligned_cols=123 Identities=9% Similarity=-0.039 Sum_probs=85.9
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE 243 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 243 (307)
+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......+.. ++.....+..++...|+..-
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcch
Confidence 334444444444444443332 334444555555566677888888888777765422 56678888899999998887
Q ss_pred HHH--HHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 244 ACQ--YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 244 a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
|.. ++.++.+.+ +.+...|..+...+.+.|+.++|-+.|....+..
T Consensus 737 a~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 737 AEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 777 888888775 4577889999999999999999999998765543
No 106
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.65 E-value=5.1e-08 Score=49.68 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP 37 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 37 (307)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4.9e-05 Score=57.97 Aligned_cols=261 Identities=13% Similarity=0.120 Sum_probs=158.8
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
+.+.+..+.+..+++.|++++....++ .| +......|-.+|.. ..++..|-.-++++-.. -|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~----------~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYR----------LQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh--ChHHH
Confidence 566777778888999999999888776 34 56667777777777 78888888888887655 34443
Q ss_pred HHHH-HHHHHHhcCCchhHHHHHHHHHHcC-------------------------------CCCchhhHHHHHHHHHhcC
Q 021791 86 SFSI-VLHVYSRAHKPQLSLDKLNFMKEKG-------------------------------ICPTVATYTSVVKCLCSCG 133 (307)
Q Consensus 86 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~~~ll~~~~~~~ 133 (307)
-|.. -...+.+.+.+..|+.+...|.... ...+..+.+.......+.|
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 3321 2233445555555555555443310 0112333333333445778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-------------cHH--------H
Q 021791 134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-------------NIH--------T 192 (307)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~ 192 (307)
+++.|.+-|+...+.+---....|+..+.. .+.++.+.|++...++.+.|. .. |+. .
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~-r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI-RQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh-hcCCccCccceeccCchhcccchHHHH
Confidence 888888888877765433355667666544 456788888888888877764 21 111 0
Q ss_pred HHHHHHH-------HHhcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791 193 YNILIGM-------FMALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 264 (307)
Q Consensus 193 ~~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 264 (307)
-+.++.+ +.+.|+++.|.+.+-.|.-+ ....|+.|.+.+.-.= -.+++.+..+-+.-+++.+. -...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 1223322 34667777777777766532 1234566655554332 23445555555555554432 3456888
Q ss_pred HHHHHHhhchhHHHHHHHHHH
Q 021791 265 TLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~ 285 (307)
.++-.|++..-++.|-.++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhh
Confidence 888889999888888887754
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=6.5e-05 Score=55.91 Aligned_cols=188 Identities=9% Similarity=0.085 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 021791 62 EKTIRNAEKVFDEMRVR---G-IEPDVT-SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE 136 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 136 (307)
..+.++..+++.++... | ..++.. .|.-++-+....|+.+.|...++.+...- +-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 56678888888877543 3 445554 35556667777888888999998887763 334444444444556778899
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791 137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV 216 (307)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (307)
+|.++++.+.+.++. |..++-.=+...-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999998887643 66666666666667777778888888777764 678889999999999999999999999888
Q ss_pred hhCCCCCCHHhHHHHHHHHHcc---CcHHHHHHHHHHHHHc
Q 021791 217 KGSELGLDLDSYTMLIHGLCEK---QKWKEACQYFVEMIEK 254 (307)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 254 (307)
.-.. +.++..+..+.+.+--. .+.+-+.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8763 22555556666655333 3566788888887754
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=7e-05 Score=55.74 Aligned_cols=189 Identities=11% Similarity=0.102 Sum_probs=142.1
Q ss_pred cCchhhHHHHHHHHHhc---C-CCCcHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791 17 INRIDMAERFLGEMIER---G-VEPNVV-TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 91 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~---~-~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 91 (307)
..+.++.++++.++... | ..++.. .|..++-+... .++.+-|...++++... ++-+..+-..-.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld----------~~~~~lAq~C~~~L~~~-fp~S~RV~~lka 93 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD----------TGRDDLAQKCINQLRDR-FPGSKRVGKLKA 93 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHh-CCCChhHHHHHH
Confidence 35678899999988754 4 555654 45555556666 77888999999998876 333333332222
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (307)
-.+-..|++++|+++|+.+.+.+ +.|..++-.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|+++
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 33556889999999999999886 347777877777777888888998888888776 4569999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHhhCC
Q 021791 172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMDMVREIWNHVKGSE 220 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 220 (307)
+|.-.++++.-.. |.++..+..+...+.-.| +.+.+.+.+.+..+..
T Consensus 172 kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 172 KAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999875 556666666666655444 5677888998888764
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=4e-06 Score=58.27 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG 234 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (307)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++.....+ +.+...+..+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344445555666666666666666665544 4455666666666666666666666666665543 2245555556666
Q ss_pred HHccCcHHHHHHHHHHHHHc
Q 021791 235 LCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~~ 254 (307)
+...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666676666666654
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=6e-05 Score=61.27 Aligned_cols=139 Identities=10% Similarity=0.053 Sum_probs=100.1
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcCCChh
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS-AETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 171 (307)
.+...|++++|++.+..+...- +-|...+......+.+.++.++|.+.++.+.... |+ ......+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 4456777888888888877663 2355556666777888888888888888887753 33 556666777788888888
Q ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
+|..+++...... +.|+..|..|.++|...|+..++.....+ .|...|++++|...+...
T Consensus 392 eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 392 EAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 8888888877765 67777888888888888877776654433 345577888888888877
Q ss_pred HHc
Q 021791 252 IEK 254 (307)
Q Consensus 252 ~~~ 254 (307)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 766
No 112
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.62 E-value=5.6e-08 Score=49.92 Aligned_cols=35 Identities=46% Similarity=0.855 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcH
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNV 39 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 39 (307)
.+||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=4.2e-06 Score=67.98 Aligned_cols=121 Identities=13% Similarity=0.201 Sum_probs=71.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791 124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL 203 (307)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (307)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+..+.. +.+...+..-...+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 34445555566666666666666543 22 33345555556666666666666666543 44555555556666666
Q ss_pred CcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 204 NRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
++.+.|.++.+++.... +-+..+|..|..+|...|+++.|+..++.+
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666652 113446666666666666666666666544
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=5.1e-06 Score=57.71 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (307)
..+...+...|++++|.+.++.+...+.. +...+..+...+...|++++|...+++..... +.+...+..+...+..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHH
Confidence 33444444444444444444444443221 33444444444444444444444444444432 3334444444444444
Q ss_pred cCcHHHHHHHHHHHhh
Q 021791 203 LNRMDMVREIWNHVKG 218 (307)
Q Consensus 203 ~~~~~~a~~~~~~~~~ 218 (307)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 115
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=5.9e-06 Score=67.15 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY 164 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (307)
.....|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++....... +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345667778888899999999999999874 44 4556888888899999999999999876433 677777777889
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
.+.++++.|+.+.++..... +.+..+|..|..+|...|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999985 55677999999999999999999999987763
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.00028 Score=58.32 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
|+.+|+.||+-+... .++++.+.++++... .+-+...|..-|..-.. .++++..+++|.+....
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~----------skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELA----------SKDFESVEKLFSRCLVK 82 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHH
Confidence 788888888887666 888888888888754 33355677777777777 56666666666665443
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00011 Score=57.60 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=53.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHH-HHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH-HHHHhh
Q 021791 195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTM-LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL-YRGLIQ 272 (307)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~ 272 (307)
.+.++++..|.+.+|+++|-.+....++ |..+|.+ +.++|.++++++.|+.++-++. -+.+..+...+ .+-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence 3455666667777777777666655444 4444443 4466677777777666654442 22233333333 345667
Q ss_pred chhHHHHHHHHHHhhhcCCC
Q 021791 273 SDMLRTWRRLKKKLDEESIT 292 (307)
Q Consensus 273 ~g~~~~a~~~~~~~~~~~~~ 292 (307)
.+.+--|-+.|+.+...+.+
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 77766666666666554433
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.52 E-value=2.4e-07 Score=47.47 Aligned_cols=33 Identities=42% Similarity=0.852 Sum_probs=26.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888888887776
No 119
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=0.00016 Score=60.81 Aligned_cols=242 Identities=7% Similarity=0.039 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
.|..++.+| ..+++.+.++..+.+.+. .+-...|....--.+.. .|+-++|......-....+. +.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~----------lg~~~ea~~~vr~glr~d~~-S~v 76 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNC----------LGKKEEAYELVRLGLRNDLK-SHV 76 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhc----------ccchHHHHHHHHHHhccCcc-cch
Confidence 344444444 456677777777766653 22222333222222222 45556666665555443322 555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR 165 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (307)
.|..+.-.+-...++++|++.|......+.. |...+.-+.-.=++.++++.......+..+.... ....|..+..++.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQH 154 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Confidence 6666666666666677777777776665432 4555554444445666666666666665554221 3455666666666
Q ss_pred cCCChhHHHHHHHHHhhcCCCCccHHHHHHHH------HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHcc
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILI------GMFMALNRMDMVREIWNHVKGSELGLDLDSY-TMLIHGLCEK 238 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~ 238 (307)
-.|+...|..++++........|+...+.... ......|..+.|.+.+...... ..|...+ ..-...+.+.
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHH
Confidence 66777777777766665542234444443222 1223445555555554443332 1122222 2233445566
Q ss_pred CcHHHHHHHHHHHHHcCCCCcHhhHHHH
Q 021791 239 QKWKEACQYFVEMIEKGLLPQKVTFETL 266 (307)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~p~~~~~~~l 266 (307)
+++++|..++..++.. .||..-|...
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 6667777777766655 3454444333
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=5.5e-05 Score=67.50 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=137.7
Q ss_pred cCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCchhHHHH----
Q 021791 33 RGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHKPQLSLDK---- 106 (307)
Q Consensus 33 ~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~---- 106 (307)
.+..| +...+..|+..+.. .+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~----------~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~ 91 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKS----------ENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLID 91 (906)
T ss_pred ccCCcchHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhh
Confidence 34555 45688999998888 78899999999977665 34433 333333355555555554444
Q ss_pred --------------HHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791 107 --------------LNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG 172 (307)
Q Consensus 107 --------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (307)
...+...+ -+...+..+..+|-+.|+.++|..+|+++.+..+. |+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 22222211 12356677888888889999999999999988744 788888888888888 9999
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHH---HH--hcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791 173 AMKLYRQMKEDDLCVPNIHTYNILIGM---FM--ALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQ 246 (307)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 246 (307)
|..++.+...... +..-|+.+... ++ ...+.+.-..+.+.+... +..--..++-.+-..|-..++|+++..
T Consensus 168 A~~m~~KAV~~~i---~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 168 AITYLKKAIYRFI---KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHH---hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 9988888765411 11112211111 11 122333333444444332 222233455566677788888999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHh
Q 021791 247 YFVEMIEKGLLPQKVTFETLYRGLI 271 (307)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~l~~~~~ 271 (307)
+++.+++.. +-|.....-++.+|.
T Consensus 245 iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcC-CcchhhHHHHHHHHH
Confidence 999998763 335556666776665
No 121
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.51 E-value=4e-06 Score=68.50 Aligned_cols=132 Identities=12% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHhc---CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCc
Q 021791 26 FLGEMIER---GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR--GIEPDVTSFSIVLHVYSRAHKP 100 (307)
Q Consensus 26 ~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 100 (307)
++..|.+. +.+.+......++..+.. ..+++++..++-+.... ....-..|..++++.|...|..
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~----------~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~ 119 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVES----------KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE 119 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCC----------HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH
Confidence 44444332 445577778888887777 78889999998888766 2223344567999999999999
Q ss_pred hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791 101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (307)
+.++.++..=...|+-||..+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 120 ~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 120 DELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988777666777777777666555
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=2.3e-05 Score=55.16 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=73.1
Q ss_pred hcCCchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChh
Q 021791 96 RAHKPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 171 (307)
..++...+...++.+....... .....-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3666777777777776653221 122333455667777888888888887777653222 123444566677777777
Q ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (307)
+|+..++..... ......+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777664332 33445566677777777777777777765
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00042 Score=57.83 Aligned_cols=121 Identities=11% Similarity=0.019 Sum_probs=65.8
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 90 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 90 (307)
++-+...|++++|....+.++..+ +-+...+..=+-+..+ .+.+++|+++.+.-... ..+..-+-.=
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq----------~~ky~~ALk~ikk~~~~--~~~~~~~fEK 85 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQ----------LDKYEDALKLIKKNGAL--LVINSFFFEK 85 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhh----------hhHHHHHHHHHHhcchh--hhcchhhHHH
Confidence 455667788999999999998775 3344555555556777 67777777554432211 1111111111
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 148 (307)
.-+..+.+..++|+..++-..+. |..+...-...+.+.|++++|+.+|+.+.++
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22333556666666666522111 2224444445556666666666666666443
No 124
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.47 E-value=1.3e-05 Score=51.73 Aligned_cols=87 Identities=20% Similarity=0.388 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791 8 TSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS 86 (307)
Q Consensus 8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (307)
..-|..+...++++..-.+|+.++..|+ .|+..+|+.++.+.++.. .+. .....++-+.+.+|++|...+++|+..+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~-lD~-~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE-LDS-EDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc-ccc-hhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3456677778999999999999999999 899999999999988742 111 3335677888899999999999999999
Q ss_pred HHHHHHHHHh
Q 021791 87 FSIVLHVYSR 96 (307)
Q Consensus 87 ~~~ll~~~~~ 96 (307)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 125
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.46 E-value=0.00062 Score=57.49 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791 195 ILIGMFMALNRMDMVREIWNHVKGSELGLDL-DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 273 (307)
.+++.+-..|+++.|...++....+ .|+. ..|..=.+.+...|+.++|..++++..+.. .||...-.--..-..+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 4555666677777777777776654 3332 234444566667777777777777776553 23433333344455566
Q ss_pred hhHHHHHHHHHHhhhcCC
Q 021791 274 DMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 274 g~~~~a~~~~~~~~~~~~ 291 (307)
++.++|.++..+..+.|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 777777777777766654
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=9.3e-05 Score=57.89 Aligned_cols=221 Identities=11% Similarity=0.098 Sum_probs=144.0
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH-HHHH
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV-TSFS 88 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 88 (307)
|+-.|.+.+++++|..+..++.- ..|-......+. .+..|+-..+ ...+.-|.+.|.-.-+.+..-|. .--.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gS---reHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGS---REHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCc---HHHHHHHHHHHHHhcccccccccccchH
Confidence 55567889999999988776632 133333322222 2222322111 45566677777665555433332 2345
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhcC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY-NCFFKEYRGR 167 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 167 (307)
++.+++.-..++++++-.+..+...=.. |...--.+..+++..|++.+|+++|-++....++ |..+| ..+.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 6677777777889999888888776433 3333345889999999999999999888776666 55555 4556789999
Q ss_pred CChhHHHHHHHHHhhcCCCCccHH-HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIH-TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ 246 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 246 (307)
+.++.|.+++-.+.. +.+.. ....+.+-|.+.+.+--|-+.|+.+... .|++..| .|+-.....
T Consensus 442 kkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG 506 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW---------EGKRGACAG 506 (557)
T ss_pred CCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc---------CCccchHHH
Confidence 999999888766543 22333 3445567788999999999999998876 4565554 244444555
Q ss_pred HHHHHHHc
Q 021791 247 YFVEMIEK 254 (307)
Q Consensus 247 ~~~~~~~~ 254 (307)
+|..+...
T Consensus 507 ~f~~l~~~ 514 (557)
T KOG3785|consen 507 LFRQLANH 514 (557)
T ss_pred HHHHHHcC
Confidence 66655544
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=3.9e-07 Score=46.34 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 021791 226 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 258 (307)
Q Consensus 226 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 258 (307)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 128
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.45 E-value=5.8e-06 Score=67.54 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=97.5
Q ss_pred CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh
Q 021791 149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS 227 (307)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (307)
+.+.+......++..+....+.+.+..++.+....... ..-..|..++++.|...|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456677777888888888888888888887766321 12234556889999999999999999888888899999999
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791 228 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 228 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 273 (307)
+|.++..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888887777777777666666655
No 129
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=0.00053 Score=59.00 Aligned_cols=231 Identities=13% Similarity=0.144 Sum_probs=157.8
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CC--------
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GI-------- 80 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~-------- 80 (307)
+.--|+..++.+.|.+...+..+-+-.-+...|..|.-.+.. .+++.+|+.+.+..... |.
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----------~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA----------QKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 344566677888888888888777556677777777776766 66777777777665443 11
Q ss_pred ----------CCCHHHHHHHHHHHHh-----------------------cCCchhHHHHHHHHH--------HcC-----
Q 021791 81 ----------EPDVTSFSIVLHVYSR-----------------------AHKPQLSLDKLNFMK--------EKG----- 114 (307)
Q Consensus 81 ----------~~~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~----- 114 (307)
.-...|+..++..+-. .++..++.+....+. ..|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0011223333322220 011112222211110 011
Q ss_pred ----CC--Cc------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791 115 ----IC--PT------VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 115 ----~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (307)
.. |+ ...|......+.+.+..++|...+.+..... ......|......+...|+.++|...|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1234455566778888888888888877653 33666777777888899999999999999988
Q ss_pred cCCCCccHHHHHHHHHHHHhcCcHHHHHH--HHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 183 DDLCVPNIHTYNILIGMFMALNRMDMVRE--IWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
.+ |.++...+++...+.+.|+...|.+ ++..+.+.+.. +...|-.+...+-+.|+.++|.+.|....+.
T Consensus 713 ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 76 6778899999999999999888888 99999988643 8899999999999999999999999988765
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00057 Score=55.83 Aligned_cols=186 Identities=14% Similarity=0.031 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE 139 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 139 (307)
..++.++...-+++...+ -.|+.......+.+......-..+..++.+..+. .-...-|.. ...+...|++++|+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~ 326 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEAL 326 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHH
Confidence 455666666666665432 3455566666666554444333333333333331 112233333 33456789999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
..++.+...-+ -|+..+......+...++.++|.+.++.+.... +......-.+.+++.+.|+..+|+.+++.....
T Consensus 327 ~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 327 KLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99999887643 367777788889999999999999999999884 333667778899999999999999999998877
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
. +-|+..|..|.++|...|+..++.....+....
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 4 448899999999999999999998888776544
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.9e-05 Score=56.93 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791 69 EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 148 (307)
.++.+.+.......+......-...|...|++++|++..+... +......=+..+.+..+++-|...+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555555444454555556667899999999999887621 3334444456677888999999999999985
Q ss_pred CCCCCHhhHHHHHHHHh----cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC
Q 021791 149 GVSPSAETYNCFFKEYR----GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD 224 (307)
Q Consensus 149 ~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (307)
. +..|.+.|..++. ..+....|+-+|+++.+.- +|++.+.+-...++...|++++|..+++....+... +
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 2 5567766666654 4567899999999999865 799999999999999999999999999999988654 6
Q ss_pred HHhHHHHHHHHHccCcH-HHHHHHHHHHHHc
Q 021791 225 LDSYTMLIHGLCEKQKW-KEACQYFVEMIEK 254 (307)
Q Consensus 225 ~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 254 (307)
+.+...++-+-...|.. +-..+.+.++...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 77766666655555554 4445555665543
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=3.3e-05 Score=54.32 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=58.0
Q ss_pred CCChhHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHccCcH
Q 021791 167 RKDANGAMKLYRQMKEDDLCVPN---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLCEKQKW 241 (307)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 241 (307)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555543 122 122233445555566666666666666654322221 1233345555666666
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
++|+..++...... ..+..+......+...|+.++|+..|++
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665432221 2233444455566666666666666554
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.38 E-value=0.0011 Score=61.66 Aligned_cols=270 Identities=10% Similarity=-0.009 Sum_probs=165.9
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcC--C----CCcHHHHHHHH--HHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERG--V----EPNVVTYNVLL--NGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~--~----~p~~~~~~~ll--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
....+...|++++|...+......- . .+....-...+ ..+.. .|++++|...+++..+.-..
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----------~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----------DGDPEEAERLAELALAELPL 484 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHhcCCC
Confidence 3445567789999999888775431 1 11111111111 12223 67788898888887653111
Q ss_pred CC----HHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791 82 PD----VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GI-CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---- 148 (307)
Q Consensus 82 ~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 148 (307)
.+ ....+.+...+...|+++.|...+++.... |. .....++..+...+...|++++|...+++....
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 12 124456666778899999999999887643 21 111234556677788999999999998876542
Q ss_pred CCC--C-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791 149 GVS--P-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG 222 (307)
Q Consensus 149 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (307)
+.. + ....+..+...+...|++++|...+.+...... .......+..+...+...|+.+.|...+.........
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 211 1 123344555667778999999999988755311 0112344555677788899999999998887542111
Q ss_pred C-CHHhH-----HHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 223 L-DLDSY-----TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 223 ~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
. ....+ ...+..+...|+.+.|..++............ ..+..+..++...|+.++|...+++....
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 11111 11224445688999999998775532111111 11345667788899999999999887553
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0012 Score=57.91 Aligned_cols=227 Identities=12% Similarity=0.101 Sum_probs=151.3
Q ss_pred HHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 021791 14 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 93 (307)
Q Consensus 14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 93 (307)
....+++.+|+.-...+.++ -|+. .|...+.++.... .|+.++|..+++.....+.. |..|...+-.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r--------~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFR--------LGKGDEALKLLEALYGLKGT-DDLTLQFLQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHH--------hcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 34678899999999998876 3444 4455555555432 78889999888888776555 88899999999
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC-Ch--
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK-DA-- 170 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-- 170 (307)
|.+.++.+++..+|+...+. .|+..-...+..+|.+.+.+.+--++--++-+. .+-+...+-.+++.+...- .+
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 99999999999999999876 467777788888999988877643333333222 2224444445554443321 11
Q ss_pred -------hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 171 -------NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH-VKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 171 -------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
.-|.+.++.+.+.++...+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-+..+...++|.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 235666666666542122222223333445568889999999843 333322334444556677778888999
Q ss_pred HHHHHHHHHHHcC
Q 021791 243 EACQYFVEMIEKG 255 (307)
Q Consensus 243 ~a~~~~~~~~~~~ 255 (307)
+..++-.++...|
T Consensus 244 ~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 244 ELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888876
No 135
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.34 E-value=1.5e-05 Score=51.40 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHhhH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGI-CPTVATYTSVVKCLCSCG--------RIEDAEELLGEMVRNGVSPSAETY 157 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 157 (307)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+...+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455566666899999999999999998 889999999998877654 244578888888888899999999
Q ss_pred HHHHHHHhc
Q 021791 158 NCFFKEYRG 166 (307)
Q Consensus 158 ~~l~~~~~~ 166 (307)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877654
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.33 E-value=0.00074 Score=59.92 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.++...++..|-+..+.. +.=...|..|...|....+...|.+.|....+.+.. +..........|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 344556666665555542 113457888888898888889999999999887643 778888999999999999999988
Q ss_pred HHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 142 LGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
.-..-+.... .-...|....-.|...++...+..-|+...+.. +.|...|..+.++|.++|++..|.++|.++...
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 4433332111 112223334445778889999999999988886 788999999999999999999999999988875
Q ss_pred CCCCHHhHHHH--HHHHHccCcHHHHHHHHHHHHHc------CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791 221 LGLDLDSYTML--IHGLCEKQKWKEACQYFVEMIEK------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 221 ~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (307)
.|+. .|... .-.-+..|.+++|+..+...+.. +...-..++..+...+.-.|-..++..++++-
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3332 33322 22346789999999999887654 22233445555555555556555555555543
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.32 E-value=7.4e-07 Score=44.18 Aligned_cols=31 Identities=42% Similarity=0.769 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhcCC
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIERGV 35 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 35 (307)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998864
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=0.00077 Score=51.74 Aligned_cols=184 Identities=7% Similarity=0.056 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY---TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF 160 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (307)
...+-.....+...|++++|.+.|+.+...-.. +...- -.+..++.+.+++++|...+++..+..+.-....+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333334455566788999999999998876433 22222 34667788899999999999998876443223333333
Q ss_pred HHHHhc--CC---------------C---hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 161 FKEYRG--RK---------------D---ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 161 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
+.+.+. .+ + ..+|+..|+.+.+. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHH-
Confidence 333321 11 1 12344444444444 233 33345555544444432
Q ss_pred CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 221 LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 221 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
=...--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+.+.+..
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1111124566788999999999999999986 3344455677888999999999999998877644
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00067 Score=60.38 Aligned_cols=175 Identities=10% Similarity=0.126 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
+.+|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-...+.-..+....|... +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 344555555555555555554443221 144455555555555555555555555444443333332 234555
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHH--------------------------HHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIH--------------------------TYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
|++.++..+..+++. .||.. -|..|...+...|++..|...-++..
T Consensus 1176 yAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 555555544333321 22222 33444444444455544444333221
Q ss_pred hCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 218 GSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 218 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
+..+|..+-.+|...+.+.-| +|...++...+.-..-++.-|-..|-+++...+++.
T Consensus 1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 445555555555554443322 232223334445566777777777777777776654
No 140
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00043 Score=60.21 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHhc-CC--------CCcH-HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGEMIER-GV--------EPNV-VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF 72 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~--------~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~ 72 (307)
+-.+|..+.+.|.+.++.+-|.-.+..|... |. .|+. ..-.+.+ ... .|.+++|+.+|
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL--Aie----------LgMlEeA~~lY 823 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL--AIE----------LGMLEEALILY 823 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH--HHH----------HhhHHHHHHHH
Confidence 4456777777777777777777777666542 11 1211 1111111 122 67778888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791 73 DEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---- 148 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 148 (307)
.+-... ..|=..|-..|.|++|.++-+.=.+..+ ..||......+-..++.+.|++.|++....
T Consensus 824 r~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 824 RQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 776643 2344456667888888777655433322 235555555666677777777776653211
Q ss_pred ------C---------CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791 149 ------G---------VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW 213 (307)
Q Consensus 149 ------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (307)
. -..|...|..........|+.+.|+.++..... |-++++..|-.|+.++|.++-
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHH
Confidence 0 112444555555555566666666666655432 334555566677777777665
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 214 NHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
++-. |....-.+.+.|-..|++.+|...|.+..
T Consensus 962 ~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred Hhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5332 55666677888888888888888887664
No 141
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0013 Score=54.29 Aligned_cols=237 Identities=12% Similarity=0.064 Sum_probs=146.4
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS 86 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (307)
+..+..+.-+..+++.|++-+....... -+..-++..-.++.. .+.+.+....-+...+.|-. ...-
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e----------~~~~~~c~~~c~~a~E~gre-~rad 293 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE----------RGKYAECIELCEKAVEVGRE-LRAD 293 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh----------ccHHHHhhcchHHHHHHhHH-HHHH
Confidence 3456667777788888888888877764 344455555556666 55555555555555544422 2222
Q ss_pred HHHH-------HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791 87 FSIV-------LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC 159 (307)
Q Consensus 87 ~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (307)
|+.+ ..++.+.++.+.+++.|.+.......|+ ...+....+++....+...-.+...-. -...
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~ 363 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAE-EERE 363 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHH-HHHH
Confidence 3333 3345556677888888877655433332 223344455555555544443322211 1222
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
-...+.+.|++..|...|.++.+.. +.|...|....-+|.+.|.+..|++-.+...+.+ ++....|..=..++....
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHH
Confidence 2556778899999999999988886 7788889999999999999998888877777763 223444555555555667
Q ss_pred cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 021791 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 271 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 271 (307)
++++|.+.|++.++.. |+..-+.--+.-|.
T Consensus 441 ~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 8888888888887653 55444433333333
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.0031 Score=55.47 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV--YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE 139 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 139 (307)
.+++.+|.+....+.+. -|+. .|...+.+ ..+.|..++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 57788898888888776 3444 23344444 45789999999999988877666 8999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----------cHHHH
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN----------RMDMV 209 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 209 (307)
.+|++.... -|+......+..+|.+.+++.+-.+.--++.+.- +-+...|-++++...... -..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999876 4667788888888999888876555555555432 445566666666655432 13456
Q ss_pred HHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHH-HHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 210 REIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFV-EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
.+.++.+.+.+.+ -+..-.......+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666766665411 122223333344557888999999994 33333222222222334455556666666665555554
Q ss_pred hcC
Q 021791 288 EES 290 (307)
Q Consensus 288 ~~~ 290 (307)
..+
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 443
No 143
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.21 E-value=0.0015 Score=51.25 Aligned_cols=222 Identities=15% Similarity=0.102 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC------------HHH--HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPD------------VTS--FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK 127 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~------------~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 127 (307)
.|.+++|..=|+...+.....+ ... ....+..+...|+...++..+..+.+..+- |...+..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHH
Confidence 6888999999999887732111 111 223344566788999999999999988543 8888889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH-H---H-------HH
Q 021791 128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT-Y---N-------IL 196 (307)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~---~-------~l 196 (307)
+|...|++..|+.=++...+..- .+..++-.+-..+...|+.+.++...++..+.+ ||... | . .|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHHHHHH
Confidence 99999999999888877766533 366777778888889999999999999988774 44322 2 1 11
Q ss_pred --HHHHHhcCcHHHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHH
Q 021791 197 --IGMFMALNRMDMVREIWNHVKGSELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGL 270 (307)
Q Consensus 197 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 270 (307)
+......++|-++.+-.+...+....... ..+..+-.++...|++.+|+....+.++. .|| ..++.-=..+|
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 12233556777777777777665433122 23455667778889999999999999864 454 77887778888
Q ss_pred hhchhHHHHHHHHHHhhhcC
Q 021791 271 IQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 271 ~~~g~~~~a~~~~~~~~~~~ 290 (307)
.-...++.|..=|++..+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888776544
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=5.6e-05 Score=48.40 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Q 021791 194 NILIGMFMALNRMDMVREIWNHV 216 (307)
Q Consensus 194 ~~l~~~~~~~~~~~~a~~~~~~~ 216 (307)
..+...+...+++++|.+.++..
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444333
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=0.00014 Score=49.10 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGIC--PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFK 162 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 162 (307)
+..+...+.+.|++++|.+.+..+.+.... .....+..+..++.+.|++++|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443211 01223444555555555555555555555443211 11233444444
Q ss_pred HHhcCCChhHHHHHHHHHhhc
Q 021791 163 EYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~ 183 (307)
++.+.|++++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.16 E-value=3.8e-06 Score=41.54 Aligned_cols=29 Identities=41% Similarity=0.770 Sum_probs=16.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKG 255 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 255 (307)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=6.9e-05 Score=47.95 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (307)
..+...+...|++++|...+++..+.... +...+..+...+...+++++|...+....... +.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 33444455555555555555555543221 23444445555555555666666555555443 2333455555555555
Q ss_pred cCcHHHHHHHHHHHhh
Q 021791 203 LNRMDMVREIWNHVKG 218 (307)
Q Consensus 203 ~~~~~~a~~~~~~~~~ 218 (307)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
No 148
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.15 E-value=8.9e-05 Score=54.13 Aligned_cols=96 Identities=19% Similarity=0.340 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHhc-----CchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh-------HHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKI-----NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------EKTIRNAEK 70 (307)
Q Consensus 3 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------~~~~~~a~~ 70 (307)
|-.+|..+++.|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+.....+ ..+.+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHH
Confidence 567888888888765 6778888889999999999999999999998776 433322221 344455666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 021791 71 VFDEMRVRGIEPDVTSFSIVLHVYSRAHK 99 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 99 (307)
++++|...|+.||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666655543
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.15 E-value=0.00015 Score=56.96 Aligned_cols=129 Identities=12% Similarity=0.149 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM 199 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (307)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+.- +.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 344444444444445555555555543211 122223222222 222334444555555554442 3344444444555
Q ss_pred HHhcCcHHHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 200 FMALNRMDMVREIWNHVKGSELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
+...++.+.|+.+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443 11111 2445555444455555555555555444
No 150
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00058 Score=59.49 Aligned_cols=237 Identities=15% Similarity=0.116 Sum_probs=156.3
Q ss_pred HHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHH
Q 021791 14 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAE--KVFDEMRVRGIEPDVTSFSIVL 91 (307)
Q Consensus 14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~ll 91 (307)
|..-|+.+.|.+-++.++ +...|..+.+.|.+...++-+....|..+.|. +.+++..+.|- .+=.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~----e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE----EDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc----chhhHHH
Confidence 556788888888777665 44689999999999766666555555555544 33455555432 1111222
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (307)
-.....|..++|+.+|.+.++. ..|=..|-..|.+++|.++-+.=-+..+ ..||......+...++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHH
Confidence 2345788999999999998764 3455677889999999988765433222 245656666666777788
Q ss_pred HHHHHHHHHh----------hcCC--------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791 172 GAMKLYRQMK----------EDDL--------CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 172 ~a~~~~~~~~----------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (307)
.|++.|++.. .... -..|...|..-.+.+-..|+.+.|+.++...+. |-.+++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 8777776532 1110 022444555555666677888888888776553 456677
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 234 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..|-.|+.++|-.+-++- -|......+.+.|...|++.+|..+|-+.+
T Consensus 947 I~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888888888776653 244555667888888888888888876654
No 151
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00091 Score=59.60 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.+.+.+|++-|-+. -|+..|..+++...+.|.+++..+++....+..-.|.. =+.|+-+|++.++..+.++.
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 44455555544221 27788999999999999999999999888887665554 45688899999988877655
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC-------------------CCCccHHHHHHHHHHHHh
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD-------------------LCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~ 202 (307)
.. -|+......+.+-|...+.++.|.-++.....-. .-..+..||..+-.+|..
T Consensus 1189 i~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1189 IA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred hc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 31 2344444444444444444444444443321110 002355677777777766
Q ss_pred cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHhhc
Q 021791 203 LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQS 273 (307)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~ 273 (307)
.+.+..| +|...++.....-...++..|-..|-+++.+.+++..+ |+. ..-..|+-|.-.|++-
T Consensus 1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence 6555433 33344444455667889999999999999999998765 332 2223466665555543
No 152
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.00075 Score=58.17 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
+.+......|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3344555666666666666655432 2334556666667777777776666442 2334456666677777
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW 213 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (307)
+.|.++-.+.... ......|-+-..-.-.+|++.+|++++
T Consensus 808 ~da~kla~e~~~~---e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP---EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcCc---hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7666666555432 233344444444444555555555443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=7.2e-05 Score=58.80 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=101.5
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM-FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (307)
.+|..+++...+.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 4688889999999999999999999987653 345555555554 33356777799999998876 4558888999999
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 234 GLCEKQKWKEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
.+...|+.+.|..+|++.+.. +.++. ..|...++-=.+.|+.+.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999876 43333 47899998889999999999999888654
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.12 E-value=0.00013 Score=53.22 Aligned_cols=93 Identities=15% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------CC
Q 021791 36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA----------------HK 99 (307)
Q Consensus 36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~ 99 (307)
..+..+|..++..+.+..... .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~R-----RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q 118 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRR-----RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ 118 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCC-----cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence 458888888888888753111 677777788888888889999999999999876541 12
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG 133 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 133 (307)
.+-+++++++|...|+.||..++..+++.+++.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 2345566666666666666666666666655544
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.11 E-value=0.00049 Score=59.21 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=87.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791 127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM 206 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (307)
.+......+.+|+.+++.+++... ...-|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence 334455677777777777766532 33456667777788888887777775532 234556777788888
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791 207 DMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (307)
+.|.++-.+... .......|-.-.+-+-.+|++.+|.+++-... .|+. .|+.|-+.|..+...++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 888777665543 23344555555566667777777777765432 2332 356677777777777776654
Q ss_pred h
Q 021791 287 D 287 (307)
Q Consensus 287 ~ 287 (307)
.
T Consensus 877 h 877 (1636)
T KOG3616|consen 877 H 877 (1636)
T ss_pred C
Confidence 3
No 156
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.11 E-value=0.0026 Score=49.94 Aligned_cols=235 Identities=9% Similarity=0.074 Sum_probs=157.9
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHH--HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVV----TYNV--LLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~--ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
..+.+.|.+++|..=|+..++.. |+.. .+.. ++.-.....+.-....-.|+...|+.....+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34678899999999999998863 3211 1111 11111110000000000567778888888888763 44888
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH----HHH-
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY----NCF- 160 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l- 160 (307)
.+..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.+.++....+..+. .||.... -.+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 8888899999999999998888777666443 6666777778888999999999988888875 3443321 111
Q ss_pred --------HHHHhcCCChhHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791 161 --------FKEYRGRKDANGAMKLYRQMKEDDLCVPN---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT 229 (307)
Q Consensus 161 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (307)
+......+++-++..-.+...+... ... ...+..+-.++...+++.+|++...++..... -|..++.
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep-~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP-EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHH
Confidence 2223556777778777777776642 112 23344566667778899999999988887532 2477888
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 230 MLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 230 ~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888888888899999988888764
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=0.00027 Score=47.61 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHH
Q 021791 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIG 198 (307)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~ 198 (307)
+..+...+.+.|++++|...|+.+...... .....+..+..++.+.|+++.|...++.+...... +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443211 01223334444555555555555555554443210 011233444444
Q ss_pred HHHhcCcHHHHHHHHHHHhhC
Q 021791 199 MFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~ 219 (307)
++...|+.++|.+.++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444455555555555544443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=1.3e-05 Score=50.51 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=9.1
Q ss_pred HHHHHHhcCcHHHHHHHHHH
Q 021791 196 LIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~ 215 (307)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.03 E-value=0.00065 Score=49.32 Aligned_cols=62 Identities=10% Similarity=-0.059 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVR 147 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (307)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555544322111 23444444444455555555555444444
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0027 Score=52.79 Aligned_cols=187 Identities=9% Similarity=0.057 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 65 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 65 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
-+++..++++....-..-+..+|..+...--..- ..+.....++++...-..--..+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3556666666554433334444444333221122 2556667777776553222345788889988899999999999
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 142 LGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 142 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
|.+..+.+..+ ++...+++|..|| .++.+-|.++|+.-.+.- ..+..--...+..+...++-..+..+|++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999887776 6667777887665 578899999999887773 3344444677888889999999999999999886
Q ss_pred CCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 221 LGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 221 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
..|+ ...|..+|+-=..-|+...+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5554 468999999889999999999998877553
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00032 Score=57.20 Aligned_cols=86 Identities=14% Similarity=-0.016 Sum_probs=40.5
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791 165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 244 (307)
...|++++|+..|++..... +.+...|..+..+|...|++++|+..++.+..... .+...|..+..+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 34444555555555444443 33444444444455555555555555555444321 1334444444445555555555
Q ss_pred HHHHHHHHH
Q 021791 245 CQYFVEMIE 253 (307)
Q Consensus 245 ~~~~~~~~~ 253 (307)
...|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00035 Score=57.03 Aligned_cols=88 Identities=10% Similarity=-0.048 Sum_probs=40.9
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGA 173 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (307)
+...|+++.|++.|.+..+.... +...|..+..+|.+.|++++|+..++++...... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 33444555555555555444322 3444444444455555555555555554443221 333444444444455555555
Q ss_pred HHHHHHHhhc
Q 021791 174 MKLYRQMKED 183 (307)
Q Consensus 174 ~~~~~~~~~~ 183 (307)
...|++....
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00076 Score=47.04 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=49.2
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791 161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (307)
...+...|++++|..+|+.+...+ +.+..-|..|.-++-..|++++|+..+......++. ++..+-.+..++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 333445555555555555555554 344455555555555555666666655555554432 45555555555555566
Q ss_pred HHHHHHHHHHHHH
Q 021791 241 WKEACQYFVEMIE 253 (307)
Q Consensus 241 ~~~a~~~~~~~~~ 253 (307)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555544
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=2.6e-05 Score=49.10 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=40.5
Q ss_pred cCcHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791 203 LNRMDMVREIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 281 (307)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 281 (307)
.|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554321 1233344456666666666666666655 21111 122333344556666666666666
Q ss_pred HHHH
Q 021791 282 LKKK 285 (307)
Q Consensus 282 ~~~~ 285 (307)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 165
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0033 Score=52.13 Aligned_cols=200 Identities=13% Similarity=0.094 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD 83 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 83 (307)
+.-++....+|...|.+.++...-+...+.|.. ...-|+.+-.++.+.|..... .++++.+...|.+.....-.|+
T Consensus 257 it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k---~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 257 ITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK---REDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh---HHhHHHHHHHHHHHhhhhcCHH
Confidence 344566667778888877777777766665533 334555555555554332222 6888899999988766544433
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
.. .+....+++.+..+...-.+... ..-...-.+.+.+.|++..|+..|.+++...+. |...|..-.-+
T Consensus 333 ~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac 401 (539)
T KOG0548|consen 333 LL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC 401 (539)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 32 22333444544444443333221 122223367788899999999999999888644 78889989999
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
|.+.+.+..|+.-.+...+.+ ++....|..=..++....+++.|.+.|.+..+.+
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988888877775 5666677666677777788999999998888764
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.0023 Score=54.83 Aligned_cols=142 Identities=14% Similarity=0.079 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC--------chhHH
Q 021791 34 GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHK--------PQLSL 104 (307)
Q Consensus 34 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~--------~~~a~ 104 (307)
..+.+...|...+++........ .+..+.|..+|++..+. .|+ ...|..+..++..... ...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~-----~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGD-----AKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34567788888888866533322 56678899999999887 444 4445544443332211 11222
Q ss_pred HHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 105 DKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
+........ ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|++++|.+.+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 222222221 123344566666666666777888888887777754 46677777777777778888887777777666
Q ss_pred C
Q 021791 184 D 184 (307)
Q Consensus 184 ~ 184 (307)
+
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 4
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.0004 Score=48.42 Aligned_cols=93 Identities=10% Similarity=0.002 Sum_probs=58.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791 124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL 203 (307)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (307)
.+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|....... +.|+..+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHc
Confidence 3444455666666666666666655443 55556666666666666777777666666655 45566666666666667
Q ss_pred CcHHHHHHHHHHHhhC
Q 021791 204 NRMDMVREIWNHVKGS 219 (307)
Q Consensus 204 ~~~~~a~~~~~~~~~~ 219 (307)
|+.+.|++.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777776666655543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00029 Score=50.93 Aligned_cols=64 Identities=19% Similarity=0.065 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP--SAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
..+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555556666666555554432111 1234555555555555555555555555544
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00087 Score=48.65 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI 195 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (307)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..... +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 455677788888889999999999998886543332 3577888888999999999999999888764 456667777
Q ss_pred HHHHHHhcCc--------------HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791 196 LIGMFMALNR--------------MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 196 l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (307)
+...+...|+ +++|.++++.....+ +..|..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chhHHHHHHHHHhcCc
Confidence 7778877776 578899998888753 3336666666555543
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0017 Score=51.27 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=111.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC--HhhHH
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEK----GIC-PTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPS--AETYN 158 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~ 158 (307)
.....|-..+++++|.+.|...... +-. .-...|.....+|.+. ++++|...+++.... .-.|+ ...+.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444556666777666666555321 111 1122344444444443 777777777766542 11222 33566
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHhhc----CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-----CHH-h
Q 021791 159 CFFKEYRGR-KDANGAMKLYRQMKED----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-----DLD-S 227 (307)
Q Consensus 159 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~ 227 (307)
.+...|... |++++|.+.|.+..+. +....-..++..+...+.+.|++++|.++|+++....... +.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 677778888 8999999998877543 2101123456778888999999999999999887643221 121 2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCc--HhhHHHHHHHHhhc--hhHHHHHHHHHHh
Q 021791 228 YTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQ--KVTFETLYRGLIQS--DMLRTWRRLKKKL 286 (307)
Q Consensus 228 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 286 (307)
|-..+-++...|+...|...+++..+. ++..+ ......|+.+|-.. ..++.+..-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333444666789999999999998754 23222 23456667766442 2345554444444
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0044 Score=53.07 Aligned_cols=146 Identities=14% Similarity=0.025 Sum_probs=96.1
Q ss_pred CCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC--------ChhHHHHHHHHH
Q 021791 114 GICPTVATYTSVVKCLCSCG-----RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK--------DANGAMKLYRQM 180 (307)
Q Consensus 114 ~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 180 (307)
+.+.+...|...+.+..... ....|..+|++..+..+. ....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34557778888887754332 366888888888886433 3444444433332211 123334444443
Q ss_pred hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH
Q 021791 181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 260 (307)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 260 (307)
......+.+...+..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 3321114556777777777777899999999999988874 57888888899999999999999999988754 5665
Q ss_pred hhHH
Q 021791 261 VTFE 264 (307)
Q Consensus 261 ~~~~ 264 (307)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5544
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.88 E-value=0.0024 Score=50.46 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHH-H
Q 021791 125 VVKCLCSC-GRIEDAEELLGEMVRN----GVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIH-T 192 (307)
Q Consensus 125 ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~ 192 (307)
+...|-.. |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|..+|+++..... ...+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33344444 6666666666655432 2 111 23455566667777777777777776654321 011221 2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCC--CCCC--HHhHHHHHHHHHc--cCcHHHHHHHHHHH
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSE--LGLD--LDSYTMLIHGLCE--KQKWKEACQYFVEM 251 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~ 251 (307)
+...+-.+...|+...|.+.++...... +..+ ......|+.+|-. ...+..++.-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2223334455667777777777766442 2212 2334555665532 23455555555544
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.87 E-value=0.013 Score=52.56 Aligned_cols=180 Identities=8% Similarity=0.042 Sum_probs=132.9
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQ 179 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (307)
...++..|-+..+.... =...|..|...|...-+...|...|+...+.+.. +..........|....+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666666665555332 3567889999999888999999999999876544 677888999999999999999999443
Q ss_pred HhhcCCCCccHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 021791 180 MKEDDLCVPNIH--TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 257 (307)
Q Consensus 180 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 257 (307)
..+.. +.-.. -|....-.|...++...+..-|+......+. |...|..+.++|.+.|++..|+++|.+.... .
T Consensus 552 ~~qka--~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 552 AAQKA--PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred Hhhhc--hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33332 22222 2333445567788999999999988877544 8889999999999999999999999998754 5
Q ss_pred CcHhhHHHHHHH--HhhchhHHHHHHHHHHhh
Q 021791 258 PQKVTFETLYRG--LIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 258 p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 287 (307)
|+. +|.....+ -+..|+++++...+..+.
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 554 33333332 355788888888887764
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0025 Score=47.65 Aligned_cols=171 Identities=9% Similarity=0.051 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG 166 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (307)
.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...++++.+.-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344566778999999999999887622 223445567788888999999999999998875332122222222222211
Q ss_pred C-------------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791 167 R-------------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 167 ~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (307)
- +...+|... +..++.-|=......+|...+..+... =...--.+..
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 1 111223333 344444444455566666655555432 1111233567
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCcH----hhHHHHHHHHhhchhHHHHHH
Q 021791 234 GLCEKQKWKEACQYFVEMIEKGLLPQK----VTFETLYRGLIQSDMLRTWRR 281 (307)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~ 281 (307)
.|.+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 789999999999999999987 2333 356778889999998875543
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0049 Score=44.08 Aligned_cols=136 Identities=12% Similarity=0.094 Sum_probs=101.0
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH
Q 021791 115 ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN 194 (307)
Q Consensus 115 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (307)
..|+...--.|..+....|+..+|...|++....-..-|......+.++....+++..|...++.+.+.+.-..++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35677777778889999999999999999988765666778888888888899999999999988877642222344556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
.+.+.+...|+..+|+..|+..... -|+...-......+.+.|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6778888899999999999988876 4555554444555667776666655554443
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0033 Score=42.21 Aligned_cols=56 Identities=21% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791 127 KCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (307)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555554443322 12333344444555555555555554444
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0036 Score=48.30 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=91.3
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHhhC
Q 021791 143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMDMVREIWNHVKGS 219 (307)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 219 (307)
+.-...++. |...|..|...|...|+.+.|..-|....+.. ++|...+..+..++.... ...++..+++++...
T Consensus 146 e~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 146 ETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 333334433 78899999999999999999999999988876 577777777777766543 456788899999887
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 269 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 269 (307)
... |+.+...+...+...|++.+|...|+.|++. -|....+..++..
T Consensus 223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 533 7777788888889999999999999999976 3344445555543
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.001 Score=48.05 Aligned_cols=65 Identities=11% Similarity=-0.081 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 148 (307)
...|..+...+...|++++|...|+........+ ...++..+...+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344445555555555555555555554432111 1234555555555556666666555555543
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0095 Score=45.12 Aligned_cols=130 Identities=10% Similarity=0.014 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH-----HH
Q 021791 88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF-----FK 162 (307)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 162 (307)
+.++.+....+.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.+..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444455555556666666666666554445555555666666666666666666655543222232222222 22
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
.|.-.+++..|...+.++...+ +.|....|.-.-+..-.|+...|.+.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555566666665555544 233333333333333355666666666666654
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00065 Score=52.09 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=81.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791 127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM 206 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (307)
+-..+.+++++|+..|.+.+...++ |.+.|..=..+|.+.|.++.|++-.+.....+ +-.+.+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence 3467788999999999998887554 77778888888999999999988888888775 56678899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791 207 DMVREIWNHVKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (307)
++|++.|+...+. .|+-.+|-.=+.
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 9999998888875 566655544443
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=0.00022 Score=42.73 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 133 GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
|++++|.++|+++....+. +...+..+..+|.+.|++++|..+++.+...
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444444444333222 3333334444444444444444444444433
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.014 Score=44.84 Aligned_cols=170 Identities=11% Similarity=0.016 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh--c----
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTS---FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS--C---- 132 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~---- 132 (307)
.|++++|.+.|+.+...-.. +... .-.+..++.+.++++.|...+++..+........-+...+.+.+. .
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 57889999999999876322 2222 245667888999999999999999887433233333333433321 1
Q ss_pred -----------CCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791 133 -----------GRI---EDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG 198 (307)
Q Consensus 133 -----------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (307)
.+. .+|...|+.+.+. |=.+.-..+|...+..+... .-..- -.+..
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e-~~ia~ 183 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE-LSVAE 183 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH-HHHHH
Confidence 122 2344555555543 22222233444333333221 11111 14556
Q ss_pred HHHhcCcHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 199 MFMALNRMDMVREIWNHVKGS--ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 677777777777777776654 122234455666777777777777777666543
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.026 Score=47.74 Aligned_cols=163 Identities=11% Similarity=0.042 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH--------HHhhcCCCCcc
Q 021791 120 ATYTSVVKCLCSC--GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYR--------QMKEDDLCVPN 189 (307)
Q Consensus 120 ~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~ 189 (307)
..+.+++..+.+. .....+.+++...-+....-...+.-.++......|+++.|.+++. .+.+.+. .|
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P- 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LP- 417 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-Ch-
Confidence 3445555544432 2467788888777766444345666777888899999999999999 5555543 34
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCCCCHH----hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH
Q 021791 190 IHTYNILIGMFMALNRMDMVREIWNHVKGS--ELGLDLD----SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 263 (307)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 263 (307)
.+...+...+.+.++-+.|..++...... .-.+... ++..+...-.+.|+-++|..+++++.+. .++|..+.
T Consensus 418 -~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l 495 (652)
T KOG2376|consen 418 -GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLL 495 (652)
T ss_pred -hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHH
Confidence 45566777777777777777777665431 0011112 2333444445779999999999999986 36788899
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhh
Q 021791 264 ETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
..++.+|+.. +.+.|+.+-+++.
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999998876 4677777766654
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00026 Score=42.35 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=25.2
Q ss_pred hcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 202 ALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
..|++++|.+.++.+...... +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555444222 4444445555555555555555555555443
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.0083 Score=51.69 Aligned_cols=214 Identities=11% Similarity=0.050 Sum_probs=125.4
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
|.+..|..+.......-.++.|+..|-+.... |.+.....|-...++.-+..+...+-|.+++|+++|-+|....
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 55666766666666666666676666655432 1221111121122221111122223678888988888776552
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF 160 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (307)
..+..+.+.|||-.+.++++.--.- .-..-...|+.+...++....++.|.+.|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 2455667778877766665431100 00112456788888888888888888887664321 234
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791 161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (307)
+.++.+..++++...+.+.+ +.+....-.+.+++.+.|.-++|.+.+-+... | ...+..|...++
T Consensus 829 ~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 56666666676666665555 34455666778888888888888776654332 1 234566777777
Q ss_pred HHHHHHHHHHH
Q 021791 241 WKEACQYFVEM 251 (307)
Q Consensus 241 ~~~a~~~~~~~ 251 (307)
|.+|.++-++.
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777776654
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00058 Score=40.41 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=27.5
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
..+...|++++|...|+.+...... +...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554311 444455555555555555555555555543
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.004 Score=43.77 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHhhH
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR-----NGVSPSAETY 157 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 157 (307)
....++..+...|+++.|..+.+.+..... .+...|..+|.+|...|+...|.++|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445567777888899999999988888754 3788888999999999999999998887754 3777776654
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0016 Score=50.00 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG 172 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (307)
-..+.+++++|+..|.+.++.... |..-|..-..+|.+.|.++.|++=.+..+..+.. ...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 356788999999999999998544 7888888999999999999999988888876443 56799999999999999999
Q ss_pred HHHHHHHHhhcCCCCccHHHHHH
Q 021791 173 AMKLYRQMKEDDLCVPNIHTYNI 195 (307)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~~ 195 (307)
|.+.|+...+. .|+-.+|-.
T Consensus 168 A~~aykKaLel---dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL---DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc---CCCcHHHHH
Confidence 99999999887 455555543
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0081 Score=40.34 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=62.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHh
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYR 165 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 165 (307)
+..++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566678888888888888888776543 335556777788888888888888887764211 01222223334567
Q ss_pred cCCChhHHHHHHHHHhh
Q 021791 166 GRKDANGAMKLYRQMKE 182 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~ 182 (307)
..|+.++|+..+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77888888887766553
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.01 Score=45.83 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=89.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC---CChhHHHHHHHHHhhcCCCCccHHH
Q 021791 116 CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR---KDANGAMKLYRQMKEDDLCVPNIHT 192 (307)
Q Consensus 116 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (307)
+-|...|..|...|...|+.+.|...|....+... ++...+..+..++... ....++..+|++....+ +.|..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence 34889999999999999999999999999887633 3666666666654433 34578999999999987 678888
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (307)
...|...+...|++.+|...|+.|.+.. |....+..+|+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 8899999999999999999999999873 33334444444
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.028 Score=45.02 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG 234 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (307)
.+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... +-++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 355566777788888888888877764 78999999999999999999988876432 1256789999999
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHH
Q 021791 235 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 282 (307)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 282 (307)
|.+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+.
T Consensus 247 ~~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 99999999999888872 21 2234445555555555444
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00058 Score=40.96 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG-RIEDAEELLGEMVR 147 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 147 (307)
+.+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|+..+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555666666666666666665555322 4555555555666665 45666666555544
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00066 Score=40.16 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=26.4
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
.+...|++++|...|+++.+.. +-+...+..+..++...|++++|...++.+.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443 33444455555555555555555555555443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00078 Score=40.40 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC-cHHHHHHHHHHHH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ-KWKEACQYFVEMI 252 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~ 252 (307)
+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|+..+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 3334444444444444 3444444444443
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.033 Score=47.79 Aligned_cols=251 Identities=12% Similarity=0.133 Sum_probs=131.5
Q ss_pred HHHHHHHHHhcCchhhHHHH---------HHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHh
Q 021791 7 YTSLIYGWCKINRIDMAERF---------LGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRV 77 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~---------~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 77 (307)
+.+=+..|...|.+++|.++ |+.+... ..+.-.+++.=.+|.+..+ -.+-+...-++++.+
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd--------l~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD--------LRYLELISELEERKK 628 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc--------cHHHHHHHHHHHHHh
Confidence 34445567777888777654 2222221 1234455566667766432 234455555677888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHhC--C
Q 021791 78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT-VATY-----TSVVKCLCSCGRIEDAEELLGEMVRN--G 149 (307)
Q Consensus 78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~--~ 149 (307)
.|-.|+... +...++-.|.+.+|-++|.+- |...- ...| .-...-+...|..++-..+..+-.+. +
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 888888754 344556667777777766542 22100 0000 01222333444444333333221111 1
Q ss_pred CCCCHhhHHHHHHHHhcCCChhHHHHHHHH----------HhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 150 VSPSAETYNCFFKEYRGRKDANGAMKLYRQ----------MKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
++-. .+....+...|+.++|..+.-. ..+.+ ..+..+...+...+.+...+..|-++|..|-..
T Consensus 703 ~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld--~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 703 IKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD--KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred cCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc--hhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 1101 1222333445555555444311 11111 334455666666666677777777777766532
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh-----------hHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV-----------TFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
..+++.....++|.+|..+-++.-+ +.||.. -|...-.+|.+.|+-.+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3456667777888888887776543 233332 234444677888888888888887755
Q ss_pred cC
Q 021791 289 ES 290 (307)
Q Consensus 289 ~~ 290 (307)
..
T Consensus 846 na 847 (1081)
T KOG1538|consen 846 NA 847 (1081)
T ss_pred hh
Confidence 44
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.028 Score=42.70 Aligned_cols=131 Identities=10% Similarity=-0.067 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHH-----HHHHhcCChH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVV-----KCLCSCGRIE 136 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~ 136 (307)
.+.+.-...++++.++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+++.++ ..|.-.+++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 67788888889998887667788889999999999999999999999887664444555555444 3456678899
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791 137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL 196 (307)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (307)
.|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.+.+. .|...+-+++
T Consensus 270 ~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~ 325 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESV 325 (366)
T ss_pred HHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhhH
Confidence 999999888876544 5555555555555678999999999999887 4554444433
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.45 E-value=0.0041 Score=48.25 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCCHHhH
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMFMALNRMDMVREIWNHVKGSEL--GLDLDSY 228 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 228 (307)
..|...+....+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+...-. +.....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555556677888888887777763 33 24666777777778888888888877775411 1123445
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 229 TMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 229 ~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
-.+..++...|+.++|..+|+++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566666778888888888877765
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0015 Score=45.90 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhhH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTF 263 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~ 263 (307)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.+. |+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666677777777777777777664 336677777777777777777777777766432 777777653
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.43 E-value=0.0046 Score=41.96 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=35.5
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHH
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG 269 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 269 (307)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34567777777777777777777777777777655 666666677777653
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.031 Score=41.79 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGV--EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS 86 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (307)
.....+...|++.+|.+.|+.+...-. +-.....-.+..++.+ .+++++|...+++..+.-..-....
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----------~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----------QGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHCCCCcchh
Confidence 345566678888888888888876521 2223445556666777 7778888888888776521111112
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCC---CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGIC---PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
+...+.+.+......... ....... --...+..++.-|-.+....+|...+..+... =...--.+...
T Consensus 80 ~A~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 222222222111111100 0000000 01123444555555555556665555554432 01111224566
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccH----HHHHHHHHHHHhcCcHHHHH
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNI----HTYNILIGMFMALNRMDMVR 210 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 210 (307)
|.+.|.+..|..-++.+.+.- |++ .....++.++.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 777888888887777777762 332 34456667777777666443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0054 Score=47.62 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCcHhhHHH
Q 021791 190 IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKG--LLPQKVTFET 265 (307)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ 265 (307)
...|...+....+.|++++|...|+.+........ ...+-.+..+|...|++++|...|+.+.+.- -......+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 44566666555678999999999999998632211 3577788899999999999999999999751 1112344555
Q ss_pred HHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 266 LYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
+...+...|+.++|..+++++.+.-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6677889999999999999887643
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.059 Score=43.83 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCS---CGRIEDAEELLGEMVRNGVSPSAETYN 158 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (307)
.+...++-+|-...+++...++.+.+...- +.-....-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667999999999999999998762 11123333345556667 899999999999977666677899998
Q ss_pred HHHHHHhc---------CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc----HHHHHHHH---HH-HhhCC-
Q 021791 159 CFFKEYRG---------RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR----MDMVREIW---NH-VKGSE- 220 (307)
Q Consensus 159 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~- 220 (307)
.+.+.|-. ....++|...|.+.-+.. ||..+=-.++..+...|. -.+..++- .. ..++|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 88877632 234677888888776653 443322222222222332 11222322 21 11222
Q ss_pred --CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 221 --LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 221 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
-..+...+..++.++.-.|++++|.+..++|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2245666788899999999999999999999865
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.031 Score=39.41 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=63.4
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (307)
-+...|++++|..+|.-+...+ +.+..-+..|..++-..+++++|...+...-..+.. |+..+-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 3456788888888888877765 455666677777777788888888887776655432 5555666777778888888
Q ss_pred HHHHHHHHHHH
Q 021791 243 EACQYFVEMIE 253 (307)
Q Consensus 243 ~a~~~~~~~~~ 253 (307)
.|...|...++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877766
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.27 E-value=0.0071 Score=41.03 Aligned_cols=49 Identities=6% Similarity=0.019 Sum_probs=29.1
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHH
Q 021791 187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKG-SELGLDLDSYTMLIHGL 235 (307)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 235 (307)
.|+..+..+++.+|+..|++..|.++.+.+.+ .+++.+...|..|++-.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56666666666666666666666666665543 24455555666666543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.004 Score=37.75 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
..|.+.+++++|.++++.+...+.. +...+.....++...|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455566666666666666655322 4455555566666666666666666666644
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0024 Score=39.32 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=30.0
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCc-HhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIEK----GL-LPQ-KVTFETLYRGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (307)
+++.+...|...|++++|+..|++.++. |- .|+ ..++..+...+...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555432 10 111 234555555555666666666655553
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0061 Score=36.90 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=25.5
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
|.+.+++++|.++++.+...+ +.+...+......+...|++++|.+.++...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444455555554444443 334444444444444555555555555444443
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.06 E-value=0.057 Score=38.15 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791 129 LCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM 208 (307)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (307)
+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+ ..|+..+-.....+...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHH
Confidence 44567777777777766665443 55566666666667777777777776655543 2333444555666677777777
Q ss_pred HHHHHHHHhh
Q 021791 209 VREIWNHVKG 218 (307)
Q Consensus 209 a~~~~~~~~~ 218 (307)
|+..|.....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0054 Score=37.73 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CC-CCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 191 HTYNILIGMFMALNRMDMVREIWNHVKGS----EL-GLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
.+++.+...|...|++++|+..+++.... |. .|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666677777777777766665532 11 111 34566667777777777777777776543
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.83 E-value=0.027 Score=46.48 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 189 NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL----DSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
+...++.+..+|...|++++|...++...+.+ |+. .+|..+..+|...|+.++|+..+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444555555555554444432 221 1244444444555555555555554444
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.81 E-value=0.077 Score=35.80 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791 225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291 (307)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 291 (307)
.......+..+..+|+-++..+++.++.+. -.+++.....+..+|.+.|+..++.+++++..+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334455555666666666666666665542 245555566666666666666666666666666554
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.81 E-value=0.11 Score=37.49 Aligned_cols=133 Identities=9% Similarity=0.062 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHH
Q 021791 81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSAETYNC 159 (307)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 159 (307)
.|+...-..|..+....|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.+.. -++++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56777777888889999999999999988876545557777788888888899999999999888775321 12345556
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV 216 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (307)
+.+.+...|.+..|..-|+..... .|+...-......+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 778888889999999999888876 455555555555666778766665444433
No 213
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.81 E-value=0.18 Score=40.02 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 021791 20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR 96 (307)
Q Consensus 20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~ 96 (307)
+++..++++.|.+.|.+-+..+|-+........ +.........++..+|+.|++.. -.++-.++..++.. .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~----~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEE----EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--c
Confidence 567788899999999998887776644333331 11112567889999999999874 23445566666544 3
Q ss_pred cCCc----hhHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 97 AHKP----QLSLDKLNFMKEKGICPTVA--TYTSVVKCLCSCGR--IEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 97 ~~~~----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
..+. +.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3333 56778888888877764332 33333333322222 34788889999999988887777655433
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.80 E-value=0.08 Score=35.74 Aligned_cols=137 Identities=11% Similarity=0.191 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|.+++..++..+..... +..-+|-++--....-+=+-..++++.+ |--.|... +|+.......
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~----------C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISK----------CGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-----------S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCchh----------hcchHHHHHH
Confidence 456667777777666542 4444554444444333333334444333 32223222 2333333333
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL 221 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (307)
+-.+- .+.......+......|..+...+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 79 ~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 32211 144455566777778888888888888887644 67777788888888888888888888888877764
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.046 Score=44.16 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=76.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CCC---------CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH
Q 021791 127 KCLCSCGRIEDAEELLGEMVRN-----GVS---------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT 192 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (307)
+.|.+.|++..|..-|++.... +.. .-..+++.+..+|.+.+++..|+..-...+..+ ++|...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence 4577888888888887775542 111 122345566667777777777777777777766 677777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH-HHHHHHHHHHHH
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW-KEACQYFVEMIE 253 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 253 (307)
.-.=.+++...|+++.|+..|+.+.+.... |...-+.++.+--+...+ +...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777777775322 333344444443333333 334566666654
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.77 E-value=0.21 Score=42.70 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=106.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791 126 VKCLCSCGRIEDAEELLGEMVRN-GVSPS-----AETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCVPNIHTYNI 195 (307)
Q Consensus 126 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (307)
+...+=.|+-+.+++.+.+..+. ++.-. .-.|...+..++. ..+.+.+.+++..+... .|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 33344568888999888887654 22211 1234444444433 45678899999999987 577666654
Q ss_pred H-HHHHHhcCcHHHHHHHHHHHhhCCC---CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH-H
Q 021791 196 L-IGMFMALNRMDMVREIWNHVKGSEL---GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG-L 270 (307)
Q Consensus 196 l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~ 270 (307)
. .+.+...|++++|.+.++....... ......+-.+..++...++|++|...|..+.+.. .-+..+|..+..+ +
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 3 4566778999999999997654211 1123345666777888999999999999999863 2344455555444 3
Q ss_pred hhchhH-------HHHHHHHHHhhhc
Q 021791 271 IQSDML-------RTWRRLKKKLDEE 289 (307)
Q Consensus 271 ~~~g~~-------~~a~~~~~~~~~~ 289 (307)
...|+. ++|.+++++....
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 567777 8888888877544
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.76 E-value=0.051 Score=44.12 Aligned_cols=270 Identities=14% Similarity=0.075 Sum_probs=154.9
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH--Hhc--CCC-C
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM--RVR--GIE-P 82 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~ 82 (307)
.-+++.|+....+.+|+..++.|.. |.. .|..|-.+|.- .+++++|++....= ... |-+ -
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfy----------L~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFY----------LKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhh----------HhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 3478899999999999999987643 333 34444555555 78888888764321 110 100 0
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHH----HHHHHcCCC-CchhhHHHHHHHHHhcCC--------------------hHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKL----NFMKEKGIC-PTVATYTSVVKCLCSCGR--------------------IED 137 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~-~~~~~~~~ll~~~~~~~~--------------------~~~ 137 (307)
.......|...+--.|.+++|.-.- .-..+.|-. .....+-.+.+.|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 1122233334444455555554322 112222211 123344445555554432 223
Q ss_pred HHHHHHHHH----hCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhh----cCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791 138 AEELLGEMV----RNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKE----DDLCVPNIHTYNILIGMFMALNRMDM 208 (307)
Q Consensus 138 a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (307)
|.+.|.+=. +.|-. .-...|..|...|.-.|+++.|+...+.-.. -|.-......+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 344443221 11111 1123566666667777899888877654322 12112345677888999999999999
Q ss_pred HHHHHHHHhh----CCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhhHHHHHHHHhhchhHHH
Q 021791 209 VREIWNHVKG----SELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTFETLYRGLIQSDMLRT 278 (307)
Q Consensus 209 a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~ 278 (307)
|.+.++.... .|-+ ....+.-++...|.-..++++|+.++.+-+.- ...-....+.+|..++...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9988876442 2211 12334556777777778889999988765432 122345678889999999999999
Q ss_pred HHHHHHHhhhcCCC
Q 021791 279 WRRLKKKLDEESIT 292 (307)
Q Consensus 279 a~~~~~~~~~~~~~ 292 (307)
|..+.+.-.+....
T Consensus 334 Al~fae~hl~~s~e 347 (639)
T KOG1130|consen 334 ALYFAELHLRSSLE 347 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 98887765544433
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.34 Score=42.01 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhcCch--hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC--
Q 021791 5 KMYTSLIYGWCKINRI--DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI-- 80 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-- 80 (307)
..++..=.+|.+-++. -+...-+++++++|-.|+...... .++- .|++.+|.++|.+--..+-
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay----------~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAY----------QGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHh----------hhhHHHHHHHHHHcCchhhHH
Confidence 3455555666666553 334444566777787788765443 3444 6778888888865322110
Q ss_pred --CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHH------HHHhCCCC-
Q 021791 81 --EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLG------EMVRNGVS- 151 (307)
Q Consensus 81 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~- 151 (307)
-.|...| -+.+-+...|+.++-..+.++-.+= ..+..--.+-...+...|+.++|..+.- -+.+.+.+
T Consensus 666 EmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl 742 (1081)
T KOG1538|consen 666 EMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL 742 (1081)
T ss_pred HHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc
Confidence 0011111 1233444555555444433321110 0011111223345556677777655431 11222222
Q ss_pred --CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH---
Q 021791 152 --PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD--- 226 (307)
Q Consensus 152 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 226 (307)
.+..+...+...+.+...+.-|-++|..|-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~py 810 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPY 810 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchH
Confidence 24455666666667778888899999888643 35677888899999999998877654 33332
Q ss_pred --------hHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 227 --------SYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 227 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
-|...-.+|.+.|+..+|..+++++.+.
T Consensus 811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444557788999999999999998665
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.70 E-value=0.028 Score=43.16 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHhc-----CchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh-------HHHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKI-----NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------EKTIRNAEK 70 (307)
Q Consensus 3 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------~~~~~~a~~ 70 (307)
|-.+|-+.+..+... +.++-....+..|.+.|+..|..+|+.||..+-+ |.+.+...+ -.+-+-+++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-gkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-GKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-cccccHHHHHHHHhhCchhhhHHHH
Confidence 445666677666543 5566667777888889999999999999987765 333222111 233456788
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHH
Q 021791 71 VFDEMRVRGIEPDVTSFSIVLHVYSRAHKP-QLSLDKLNFMKE 112 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 112 (307)
++++|...|+.||-.+-..|+.++.+.+-+ .+..++.-.|.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 888888888888888888888888877654 334444444543
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.68 E-value=0.17 Score=42.65 Aligned_cols=155 Identities=10% Similarity=0.060 Sum_probs=85.4
Q ss_pred HHhcCCchhHHHHHH--HHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791 94 YSRAHKPQLSLDKLN--FMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (307)
..-.++++.+.++.+ .+.. .+ +..-.+.++..+-+.|.++.|+++...-. + -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHH
Confidence 344566666655553 1111 11 23346677777777777777776643321 1 123345667777
Q ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
.|.++.++. ++...|..|.....+.|+++.|++.+.+... |..++-.|...|+.+...++.+..
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 776655432 3556778888888888888888877776653 355666666777777766666666
Q ss_pred HHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 252 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 252 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
...|- ++....++.-.|+.++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65542 44445555566666666666554
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.62 E-value=0.047 Score=42.01 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------CC
Q 021791 36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA----------------HK 99 (307)
Q Consensus 36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~ 99 (307)
+-|..+|...+..+.... +.. .+.++-....++.|.+-|+.-|..+|+.|+..+-+- .+
T Consensus 64 ~RdK~sfl~~V~~F~E~s-Vr~----R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q 138 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKS-VRG----RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ 138 (406)
T ss_pred cccHHHHHHHHHHHHHhh-hcc----cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence 446677777776665521 111 455666777788899999999999999999876432 23
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI-EDAEELLGEMVR 147 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 147 (307)
.+-+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|.+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 345889999999999999999999999999988754 345555555543
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=0.41 Score=39.67 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=81.9
Q ss_pred HhcCCC-hhHHHHHHHHHhhcCCCCccHHHHHHHH----HHHH---hcCcHHHHHHHHHHHhhCCCCCCH----HhHHHH
Q 021791 164 YRGRKD-ANGAMKLYRQMKEDDLCVPNIHTYNILI----GMFM---ALNRMDMVREIWNHVKGSELGLDL----DSYTML 231 (307)
Q Consensus 164 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 231 (307)
+.+.|. -++|+++++.+.+-. +-|...-+.+. .+|. ....+..-.++-+-+.+.|+.|-. ..-|.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 344454 778888888887764 33443333322 2222 223455556666667777777633 334444
Q ss_pred HH--HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791 232 IH--GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289 (307)
Q Consensus 232 i~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (307)
.+ -+..+|++.++.-.-.-+. .+.|++.+|..+.-++....++++|..++..+..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 43 3467899999887766665 37899999999999999999999999999987653
No 223
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=0.36 Score=38.86 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG 198 (307)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (307)
..+.+..+..+...|+...|..+-.+.. -|+...|..-+.+++..++|++...+... . -++.-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHH
Confidence 3456667778888999999988877663 36999999999999999999988876432 1 23477889999
Q ss_pred HHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791 199 MFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 273 (307)
+|.+.|+..+|..+...+. +..-+..|.+.|++.+|.+.-.+.. |...+..+...+...
T Consensus 246 ~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence 9999999999999887722 2556788899999999988765542 444555555544433
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.34 E-value=0.44 Score=38.74 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
.|+++.|.+-|+.|.... ..-..-...|.-..-+.|+.+.|.++-+..-..... -...+...+...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHH
Confidence 567777777777776431 001111223333334566666666666555544322 345566666666777777777766
Q ss_pred HHHHHhCC-C--------------------------------------CCCHh-hHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791 142 LGEMVRNG-V--------------------------------------SPSAE-TYNCFFKEYRGRKDANGAMKLYRQMK 181 (307)
Q Consensus 142 ~~~~~~~~-~--------------------------------------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (307)
++.-.... + .||.. .--.-..++.+.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 66543321 1 12211 11122344566666666666666666
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-ELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
+.. |.+..+... .+.+.|+... .-+++.... .++| +..+-..+.++-...|++..|..--+.... ..|.
T Consensus 291 K~e---PHP~ia~lY--~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr 361 (531)
T COG3898 291 KAE---PHPDIALLY--VRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR 361 (531)
T ss_pred hcC---CChHHHHHH--HHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence 552 333322221 2223443222 111111110 0112 444555566666677777777666665553 4677
Q ss_pred HhhHHHHHHHH-hhchhHHHHHHHHHHhh
Q 021791 260 KVTFETLYRGL-IQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 260 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 287 (307)
...|..|.+.- ...|+-.++++.+.+-.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 77777777654 34588888888776654
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.33 E-value=0.2 Score=34.79 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK 168 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (307)
.++..+...+.+.....+++.+...+. .+...++.++..|++.+ .++..+.++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 445555555566666666666655543 35556666666666543 2222233221 112233334555555555
Q ss_pred ChhHHHHHHHHH
Q 021791 169 DANGAMKLYRQM 180 (307)
Q Consensus 169 ~~~~a~~~~~~~ 180 (307)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.23 E-value=0.22 Score=34.38 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=52.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKG--ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG 166 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (307)
-.....+.|++++|.+.|+.+...- .+-...+--.++.+|.+.+++++|...+++.++..+.-....|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344557888999999998887762 1224455667888888999999999999888886544333445555555433
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.22 E-value=0.49 Score=40.46 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhc-CCCCc-----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIER-GVEPN-----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI 80 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 80 (307)
...++....=.|+=+.+++.+.+..+. ++.-. .-.|...+..++... . .....+.+.++++.+.+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~---~---~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGID---G---EDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCc---c---cCCCHHHHHHHHHHHHHh--
Confidence 344566666678888888888876554 22211 122333333333320 0 145667888888888876
Q ss_pred CCCHHHHHH-HHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 81 EPDVTSFSI-VLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 81 ~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
-|+...|.. -.+.+...|++++|++.|+...... .+.....+--+..++.-..++++|...|..+.+.+-- +..+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~ 341 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF 341 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence 556655543 3455667889999999998755321 1123344555666777888899998888888875322 4444
Q ss_pred HHHHHHH-HhcCCCh-------hHHHHHHHHHhh
Q 021791 157 YNCFFKE-YRGRKDA-------NGAMKLYRQMKE 182 (307)
Q Consensus 157 ~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 182 (307)
|.-+..+ +...++. ++|..+|.+...
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5444333 4455666 777777776643
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.3 Score=38.82 Aligned_cols=154 Identities=8% Similarity=-0.031 Sum_probs=91.9
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHhcCCCh
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN----CFFKEYRGRKDA 170 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 170 (307)
...|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666776777777665 3446666777777777777777777777776643 122332222 222334567777
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---ELGLDLDSYTMLIHGLCEKQKWKEACQY 247 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~ 247 (307)
++|.+.-++..+.+ +.|.-.-.++...+--.|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777777665 556666666666666777777777766544321 1001112233444445566777778877
Q ss_pred HHHHH
Q 021791 248 FVEMI 252 (307)
Q Consensus 248 ~~~~~ 252 (307)
|++-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76544
No 229
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.17 E-value=0.29 Score=34.98 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
+.+..+.+.++.|+...+..+++.+.+.|++.... ++...+. -+|+......+-.+ .+....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~V-i~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHV-IPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcc-cCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34455556677777777777888877777755433 3333443 33333333222221 22333444444344332
Q ss_pred CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
=...+..+++.+...|++-+|+.+.+..... +......++.+..+.++...-..+++-..+.+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1114566777778888888888887765322 22233456677777777777777777666654
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=0.4 Score=36.59 Aligned_cols=173 Identities=9% Similarity=0.093 Sum_probs=97.2
Q ss_pred HHHhcCCchhHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC---
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR--- 167 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 167 (307)
.-.+.|++++|.+.|+.+..... +-...+.-.++-++.+.+++++|....++.....+.-....|...|.+.+.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 44578899999999999876632 2234555666777888899999999998887754332333444444444321
Q ss_pred ----CChh---HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh-H-HHHHHHHHcc
Q 021791 168 ----KDAN---GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS-Y-TMLIHGLCEK 238 (307)
Q Consensus 168 ----~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-~~li~~~~~~ 238 (307)
.+.. .|..-|+.+... -||+ .-...|..-+..+.. ... + ..+.+-|.+.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr 180 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLND------ALAGHEMAIARYYLKR 180 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 1111 233333333333 2322 112222222222211 011 1 2344567788
Q ss_pred CcHHHHHHHHHHHHHcCCCCcHh---hHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 239 QKWKEACQYFVEMIEKGLLPQKV---TFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
|.+..|..-+++|++. .+-+.. .+-.+..+|...|..++|...-+-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888888876 322222 355556777788877777776665543
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.86 Score=40.27 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=86.5
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHH
Q 021791 151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTM 230 (307)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (307)
....-+.+--+.-+...|+..+|.++-.+.. .||...|-.=+.+++..++|++-+++-+..+ ++.-|..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 3344455666677788899999999888876 7889999999999999999998777655443 3567888
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 231 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 231 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++.-+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999886531 11 345667777777776665443
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.14 E-value=0.63 Score=38.62 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH-HHHH
Q 021791 190 IHTYNILIGMFMALNRMDMVREIWNHVKGSE-LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF-ETLY 267 (307)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~ 267 (307)
..+|...+.+-.+...++.|+++|-++.+.+ ..+++..++++++-++ .|+..-|..+|+--+.. .||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3577788888888888888899998888877 5567777888887766 46677777777754433 3444333 2233
Q ss_pred HHHhhchhHHHHHHHHH
Q 021791 268 RGLIQSDMLRTWRRLKK 284 (307)
Q Consensus 268 ~~~~~~g~~~~a~~~~~ 284 (307)
.-+...++-+.|+.+|+
T Consensus 474 ~fLi~inde~naraLFe 490 (660)
T COG5107 474 LFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 33444444444444444
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.09 E-value=0.52 Score=37.24 Aligned_cols=220 Identities=8% Similarity=0.028 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCHH------HHHHHHHHHHhcC-CchhHHHHHHHHHHc--------CCCCc-----h
Q 021791 62 EKTIRNAEKVFDEMRVRG--IEPDVT------SFSIVLHVYSRAH-KPQLSLDKLNFMKEK--------GICPT-----V 119 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~ 119 (307)
.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|...+++..+. ...|+ .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 678888888888876643 233322 2333333 33445 888887777665433 12223 3
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791 120 ATYTSVVKCLCSCGRIE---DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL 196 (307)
Q Consensus 120 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (307)
.+...++.+|...+..+ +|.++++.+...... .+.++..-+..+.+.++.+.+.+++.+|...-. .....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHH
Confidence 45677888888877655 466666666544322 345565667777778999999999999998742 233455555
Q ss_pred HHHH---HhcCcHHHHHHHHHHHhhCCCCCCHH-hHHHH-HH-H--HHccC------cHHHHHHHHHHHHHc-CCCCcHh
Q 021791 197 IGMF---MALNRMDMVREIWNHVKGSELGLDLD-SYTML-IH-G--LCEKQ------KWKEACQYFVEMIEK-GLLPQKV 261 (307)
Q Consensus 197 ~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~-~--~~~~g------~~~~a~~~~~~~~~~-~~~p~~~ 261 (307)
+..+ .... ...+...+..+....+.|... ....+ +. . ....+ ..+....++....+. +.+.+..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5554 3333 345666666655544555553 11111 11 1 11211 144444445533322 3344444
Q ss_pred hHHHHH-------HHHhhchhHHHHHHHHHHh
Q 021791 262 TFETLY-------RGLIQSDMLRTWRRLKKKL 286 (307)
Q Consensus 262 ~~~~l~-------~~~~~~g~~~~a~~~~~~~ 286 (307)
+-.++. ..+.+.++++.|.++++.-
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 433332 3466788999999998853
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.2 Score=38.47 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSEL--GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
+-.|...+...|+++.|..+|..+.+.-. +.-+.++-.+..+..+.|+.++|..+|+++.++
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444555555555555555444443210 011233444444445555555555555555544
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.46 Score=39.59 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA--ETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
+...++.+..+|.+.|++++|+..|++..+.+..... .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677888888888889999999988888876433111 35788888888888888888888888775
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.01 E-value=0.31 Score=33.89 Aligned_cols=127 Identities=12% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 021791 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM 201 (307)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (307)
...++..+...+.+......++.+...+. .+....+.++..|++.+ ..+....+.. . .+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 45677777778889999999999888764 57788899999988764 3444455442 1 12333455778888
Q ss_pred hcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-CcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791 202 ALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK-QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272 (307)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 272 (307)
+.+.++++..++..+.. +...+..+... ++++.|.+++.+- .++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 88888888888876542 22233334444 7788888877751 255677777766543
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=1 Score=39.71 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHH
Q 021791 231 LIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG 269 (307)
Q Consensus 231 li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 269 (307)
|.+--...|..+.|+..--.+.+. .+-|....|..+.-+
T Consensus 1027 lAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1027 LAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 334445667888887776555443 456667777666543
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.4 Score=39.04 Aligned_cols=125 Identities=9% Similarity=0.035 Sum_probs=91.8
Q ss_pred HHHHhcCCchhHHHHHHHHHHc-----CCC---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEK-----GIC---------PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY 157 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (307)
..+.+.|++..|...|+..... +.. .-..+++.+..+|.+.+++..|++.-++.+..+. +|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 4567888888888887775432 111 1244678888999999999999999999998764 377777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH-HHHHHHHHhhC
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM-VREIWNHVKGS 219 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 219 (307)
-.-..++...|+++.|...|+.+.+.. +.|..+-+.|+..-.+...... ..++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778889999999999999999999985 4555555555555545444443 46778777653
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.21 Score=38.39 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-cHHHHHHHH
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-NIHTYNILI 197 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 197 (307)
.|+.-+.. .+.|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+...-.| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 55555443 4556677777777777765322 1233455577777777777777777777766532111 235556666
Q ss_pred HHHHhcCcHHHHHHHHHHHhhC
Q 021791 198 GMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777765
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.59 Score=36.49 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=23.9
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
...|+...+..+|......... +...-..+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555544444222 23333444455555555555555555443
No 241
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.90 E-value=0.17 Score=39.46 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCcHhhHH
Q 021791 190 IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFE 264 (307)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 264 (307)
..++..++..+...|+.+.+...+++..... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466777777888888888888888887764 33777888888888888888888888887765 37777777666
Q ss_pred HHHHH
Q 021791 265 TLYRG 269 (307)
Q Consensus 265 ~l~~~ 269 (307)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.72 Score=41.28 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=96.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
....+.+.|++++|...|-+-... +.|+ .++.-|........-...++.+.+.|+. +.+.-..|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 334456789999999888766543 2322 3566677777777888888888888886 66777889999999999
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV 249 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 249 (307)
.++..++.+... .|...-| ....+..+.+.+-.++|..+-..... +......+++ ..+++++|++.+.
T Consensus 447 ~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYIS 514 (933)
T ss_pred hHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHh
Confidence 988887777665 3321222 34556666677777777766555443 3334444443 4667788887776
Q ss_pred HH
Q 021791 250 EM 251 (307)
Q Consensus 250 ~~ 251 (307)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 54
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.89 E-value=0.14 Score=43.19 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=97.6
Q ss_pred HHHHhcCchhhHHHHHH-HHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791 12 YGWCKINRIDMAERFLG-EMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 90 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 90 (307)
+...-.|+++.+.++.. .-.-..++ ....+.+++-+.+ .|..+.|+++-.+-. .-
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~----------~G~~e~AL~~~~D~~------------~r 324 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEK----------KGYPELALQFVTDPD------------HR 324 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHH----------TT-HHHHHHHSS-HH------------HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHH----------CCCHHHHHhhcCChH------------HH
Confidence 44556788888877775 11111122 4446667766666 677778876653322 12
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
.....+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|++..+ +..|+-.|.-.|+.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 34456788888887665332 3677899999999999999999999887643 45666677888888
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
+...++.+.....+. . +....++.-.|+.++..+++....
T Consensus 390 ~~L~kl~~~a~~~~~--~-----n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD--I-----NIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHHHTT---H-----HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccC--H-----HHHHHHHHHcCCHHHHHHHHHHcC
Confidence 888888887777662 2 333444555788888887776543
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.83 E-value=0.83 Score=37.42 Aligned_cols=170 Identities=8% Similarity=-0.054 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCchhHHHHHHHHH
Q 021791 38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR---AHKPQLSLDKLNFMK 111 (307)
Q Consensus 38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~ 111 (307)
+..+...++-+|-. ..+++...++.+.+.... +.-....-....-++.+ .|+.++|++++..+.
T Consensus 140 s~div~~lllSyRd----------iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----------IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred ChhHHHHHHHHhhh----------hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 33444455556777 899999999999998652 11122222234445666 899999999999976
Q ss_pred HcCCCCchhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHhcCC-ChhHHHHHH-
Q 021791 112 EKGICPTVATYTSVVKCLCS---------CGRIEDAEELLGEMVRNGVSPSAET---YNCFFKEYRGRK-DANGAMKLY- 177 (307)
Q Consensus 112 ~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~-~~~~a~~~~- 177 (307)
.....+++.++..+...|-. ....++|...|.+.-+.. |+... +..|+....... ...+..++-
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 66667788899888877642 224667777777665432 33221 122222222111 111222222
Q ss_pred ---HHHhhcCCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 178 ---RQMKEDDLC--VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 178 ---~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
..+.+.+.. ..+...+..++.++.-.|+.++|.+..+.+...
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122223221 345666788999999999999999999999976
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=1.5 Score=39.39 Aligned_cols=178 Identities=14% Similarity=0.102 Sum_probs=111.0
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 89 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 89 (307)
-|....+...++-|..+-+. . ..+..+...+.+.|+.--.- .|++++|...|-+.... +.|+ .
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~------Kgdf~~A~~qYI~tI~~-le~s-----~ 402 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYG------KGDFDEATDQYIETIGF-LEPS-----E 402 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHccc-CChH-----H
Confidence 34445555555555554322 2 22444444444444431000 67888888888776643 3332 3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
++.-|...........+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+... .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 555666666777778888999998876 66666789999999999998877776654 2221 1124456777777788
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
.++|..+-..... +......+++ ..+++++|.+.+..+.
T Consensus 479 l~~a~~LA~k~~~------he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 479 LDEAELLATKFKK------HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHHhcc------CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 8888777666543 3344444444 4788888888887654
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.68 E-value=0.06 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=9.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 021791 124 SVVKCLCSCGRIEDAEELLGEMVR 147 (307)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~ 147 (307)
.+...|...|++++|.++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.54 E-value=1.1 Score=36.65 Aligned_cols=220 Identities=10% Similarity=0.049 Sum_probs=140.8
Q ss_pred HhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791 15 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 94 (307)
Q Consensus 15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 94 (307)
.-.|+++.|.+-|+-|... ..|-..=++++.-..+- .|..+.|.+.-++....- +.-.-.+...+...
T Consensus 131 l~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr------~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r 198 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQR------LGAREAARHYAERAAEKA-PQLPWAARATLEAR 198 (531)
T ss_pred HhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHh------cccHHHHHHHHHHHHhhc-cCCchHHHHHHHHH
Confidence 3469999999999999863 33322222322211000 566677777776665542 22345677888899
Q ss_pred HhcCCchhHHHHHHHHHHcCC---------------------------------------CCchh-hHHHHHHHHHhcCC
Q 021791 95 SRAHKPQLSLDKLNFMKEKGI---------------------------------------CPTVA-TYTSVVKCLCSCGR 134 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~---------------------------------------~~~~~-~~~~ll~~~~~~~~ 134 (307)
+..|+|+.|+++++.-++..+ .||.. .-..-...+.+.|+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 999999999999877544321 11111 11223355788899
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791 135 IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIW 213 (307)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (307)
..++-.+++.+-+....|+. +. +-.+.+.|+ .+..-++...+...+ +.+..+...+.++....|++..|..--
T Consensus 279 ~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 279 LRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred hhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999887655553 22 222344554 344444443332222 345666777888888899999888777
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHc-cCcHHHHHHHHHHHHHc
Q 021791 214 NHVKGSELGLDLDSYTMLIHGLCE-KQKWKEACQYFVEMIEK 254 (307)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~ 254 (307)
+..... .|....|..|...-.. .|+-.++...+.+....
T Consensus 353 eaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 353 EAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666654 6788888888876644 49999999999988765
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.49 E-value=0.057 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
+..+..+|...|++++|+++++++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444555555444444443
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=1.3 Score=37.09 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=70.9
Q ss_pred HHH--HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHh---------cCCchhHHHH
Q 021791 40 VTY--NVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GIEPDV-TSFSIVLHVYSR---------AHKPQLSLDK 106 (307)
Q Consensus 40 ~~~--~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~ 106 (307)
..| ..++++.....+.. ....+.|+.+|.+.... .+.|+- ..|..+..++.. ..+..+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t-----~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFT-----PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccC-----HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 455 55666555532222 45667888888888722 234432 333333322221 1122344455
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 107 LNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
-+...+.+.. |+.....+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+.
T Consensus 327 A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 327 LDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5555555432 5666666666556666666666666666654322 3334444444445566666666666665444
No 250
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.37 E-value=0.093 Score=42.71 Aligned_cols=223 Identities=12% Similarity=0.031 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCchhHHHHHHHH--HHc--CC-CCchhhHHHHHHHHHhc
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVT----SFSIVLHVYSRAHKPQLSLDKLNFM--KEK--GI-CPTVATYTSVVKCLCSC 132 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ll~~~~~~ 132 (307)
.|+......+|+..++-|-. |.. .|.-|..+|.-.+++++|+++...= ... |- .-...+...|.+.+--.
T Consensus 30 ~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred ccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 67778888999999888733 433 4666667777788888888875321 111 10 11223334455556666
Q ss_pred CChHHHHHHHHHH----HhCCCC-CCHhhHHHHHHHHhcCCC--------------------hhHHHHHHHHHhhc----
Q 021791 133 GRIEDAEELLGEM----VRNGVS-PSAETYNCFFKEYRGRKD--------------------ANGAMKLYRQMKED---- 183 (307)
Q Consensus 133 ~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~---- 183 (307)
|.+++|...-.+- .+.|-+ .....+..+...|...|+ ++.|.++|.+-.+.
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777765443221 222211 122344445556654432 12344444332211
Q ss_pred CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH----HhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc----
Q 021791 184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNH----VKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 254 (307)
+.--.--..|..|...|.-.|+++.|+...+. .++.|-+ .....+..+..+++-.|+++.|.+.|+.-...
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 10011123455666666677889998876543 2233322 12346778888899999999999998876443
Q ss_pred CC-CCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791 255 GL-LPQKVTFETLYRGLIQSDMLRTWRRLKKK 285 (307)
Q Consensus 255 ~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (307)
|- ...+.+..+|..+|.-..++++|+.++.+
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 21 23344566788888888888888887764
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.28 E-value=2.6 Score=39.53 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHhhCCCCCCHH--hHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 197 IGMFMALNRMDMVREIWNHVKGSELGLDLD--SYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
+.+|..+|+|.+|..+..++.... +.. +-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 445555666666666655544321 111 12455566666666666666665554
No 252
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.28 Score=38.53 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=75.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 021791 78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA 154 (307)
Q Consensus 78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 154 (307)
.|.+.+..+...++..-....+++.+...+-.+...- ..|+. +-..+++.+. .-++++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 3555566667777776677778888888887776541 12222 2222333333 34677888888888889999999
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
.+++.+|+.+.+.+++..|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877665
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.96 E-value=2 Score=36.39 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh--hHHHHH
Q 021791 194 NILIGMFMALNRMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLY 267 (307)
Q Consensus 194 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~ 267 (307)
..+..++-+.|+.++|.+.++++.+..... +......|++++...+.+.++..++.+.-+.. -|.+. +|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 456666778899999999988887643221 33456778888888899999988888875432 23333 355444
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.95 E-value=0.92 Score=32.50 Aligned_cols=135 Identities=10% Similarity=0.134 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791 69 EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 148 (307)
.+.++.+.+.+++|+...+..+++.+.+.|.+. .+..+.+.++-+|.......+-.+. +....+.++=-+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 344455566677778888888888888877654 3444555555556555544443222 2233344433333332
Q ss_pred CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
=...+..++..+...|++-+|.++.+....... + ....++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~--~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDS--V---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCccc--C---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011344566667777777777777776543332 1 113455555556665555555554444
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=94.94 E-value=1.9 Score=36.17 Aligned_cols=171 Identities=14% Similarity=0.099 Sum_probs=110.3
Q ss_pred HHHHHHHHhcC-----chhhHHHHHHHHHhc-CCCCc-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791 8 TSLIYGWCKIN-----RIDMAERFLGEMIER-GVEPN-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI 80 (307)
Q Consensus 8 ~~li~~~~~~g-----~~~~a~~~~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 80 (307)
...+.+..... ..+.|+.+|.+.... ...|+ ...|..+-.++...-. ..-........+|.++-++..+.+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-~g~~~~~~~~~~a~~~A~rAveld- 334 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-HGKSELELAAQKALELLDYVSDIT- 334 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcC-
Confidence 45555555422 356788899998832 34554 3455554444433211 000001567788888888888876
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHH
Q 021791 81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNC 159 (307)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 159 (307)
+-|......+..+..-.++.+.+...|++....+.. ...+|......+.-.|+.++|.+.+++..+..+.- -....-.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 448888888888888888899999999999887543 56667777777788999999999999976643221 1223333
Q ss_pred HHHHHhcCCChhHHHHHHHHHhh
Q 021791 160 FFKEYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~ 182 (307)
.+..|+.. ..+.+.+++-+-.+
T Consensus 414 ~~~~~~~~-~~~~~~~~~~~~~~ 435 (458)
T PRK11906 414 CVDMYVPN-PLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHcCC-chhhhHHHHhhccc
Confidence 34455544 45677777655443
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=1.4 Score=34.53 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=100.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 021791 125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN 204 (307)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (307)
-.......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+..... .........-+..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence 344567889999999999999877544 466777889999999999999999999876542 222333233345555555
Q ss_pred cHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHhhch
Q 021791 205 RMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQKVTFETLYRGLIQSD 274 (307)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 274 (307)
...+...+-...-. .| |...-..+...+...|+.+.|.+.+-.++.++. .-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555554444 23 677777888889999999999998887776522 234455666676666555
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.90 E-value=0.48 Score=32.10 Aligned_cols=91 Identities=12% Similarity=-0.045 Sum_probs=57.0
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH---HHHHHccC
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTML---IHGLCEKQ 239 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g 239 (307)
+....|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|..=+++..+..-.-+....... ...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566777777777777766653 456677777777777777777777777666654222233222222 23455667
Q ss_pred cHHHHHHHHHHHHHcC
Q 021791 240 KWKEACQYFVEMIEKG 255 (307)
Q Consensus 240 ~~~~a~~~~~~~~~~~ 255 (307)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777776665
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.89 E-value=2.1 Score=36.28 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=30.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
.+..+..+.|+.++|.+.++++.+......+..+...|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555566666666666555442101223344555555556666666666555544
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.87 E-value=0.077 Score=26.85 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHH
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMI 31 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~ 31 (307)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999955
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.86 E-value=1.2 Score=33.38 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=154.5
Q ss_pred cCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 021791 17 INRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVY 94 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 94 (307)
.+....+...+.......... ....+......+.. .+.+..+...+...... ........+......+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLK----------LGRLEEALELLEKALELELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----------cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 456677777777776653221 34566666666666 56667777777666542 2344666777777788
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhcCCChh
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK-CLCSCGRIEDAEELLGEMVRNGV--SPSAETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 171 (307)
...++...+.+.+.........+ ......... .+...|+++.|...+++...... ......+......+...++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence 88888889999998888764443 222333333 78899999999999998865322 123444445555577888999
Q ss_pred HHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVP-NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVE 250 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 250 (307)
.+...+....... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+
T Consensus 185 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 185 EALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998875 34 4677888888888899999999999988876322 244455555555567779999999988
Q ss_pred HHHc
Q 021791 251 MIEK 254 (307)
Q Consensus 251 ~~~~ 254 (307)
....
T Consensus 262 ~~~~ 265 (291)
T COG0457 262 ALEL 265 (291)
T ss_pred HHHh
Confidence 8765
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=1 Score=32.30 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH-HHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH-TYNI 195 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 195 (307)
+...|..-++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.... .|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence 4556666665 467788999999999998876542222 122233446778899999999999987754 33322 1222
Q ss_pred H--HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791 196 L--IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 196 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
| .-.+...|.++....-.+.+...+-+.-...-..|--+-.+.|++.+|...|..+.+....|-
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 2 223456788888887777776654333333445566666788999999999988876544443
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.78 E-value=0.91 Score=33.06 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQM 180 (307)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (307)
+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33344444444444444444444443322221 122333444444444444444444333
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.74 E-value=2.1 Score=35.72 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=150.3
Q ss_pred HHhcCchhhHHHHHHHHHhcCC-CC---c-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791 14 WCKINRIDMAERFLGEMIERGV-EP---N-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 88 (307)
Q Consensus 14 ~~~~g~~~~a~~~~~~~~~~~~-~p---~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 88 (307)
+-+.+++.+|.++|.++-+..- .| . ...-+.++.+|.. .+++.....+....+. .| ...|.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-----------~nld~Me~~l~~l~~~--~~-~s~~l 81 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-----------NNLDLMEKQLMELRQQ--FG-KSAYL 81 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-----------hhHHHHHHHHHHHHHh--cC-CchHH
Confidence 3467899999999999876521 11 1 2233456666664 5666666666666554 22 22333
Q ss_pred HHHHH--HHhcCCchhHHHHHHHHHHc--CCCC------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791 89 IVLHV--YSRAHKPQLSLDKLNFMKEK--GICP------------TVATYTSVVKCLCSCGRIEDAEELLGEMVRN---- 148 (307)
Q Consensus 89 ~ll~~--~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 148 (307)
.+..+ +.+.+.+.+|.+.+....+. +..| |-..=+..+.++...|++.++..+++++...
T Consensus 82 ~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr 161 (549)
T PF07079_consen 82 PLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR 161 (549)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh
Confidence 34333 45778899999988777655 3222 2222356677888999999999999988765
Q ss_pred CCCCCHhhHHHHHHHHhcCC---------------ChhHHHHHHHHHhhcCC-----CCccHHHHHHHHHHHHhcC--cH
Q 021791 149 GVSPSAETYNCFFKEYRGRK---------------DANGAMKLYRQMKEDDL-----CVPNIHTYNILIGMFMALN--RM 206 (307)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~--~~ 206 (307)
....+..+|+.++-.+.+.- .++.+.-...++..... +.|.......+++...-.- +.
T Consensus 162 E~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l 241 (549)
T PF07079_consen 162 ECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERL 241 (549)
T ss_pred hhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhc
Confidence 33478889988665554431 11223333333332211 1344444444444433221 22
Q ss_pred HHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC----cHhhHHHHHHHHhhchhHHHHHH
Q 021791 207 DMVREIWNHVKGSELGLDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLYRGLIQSDMLRTWRR 281 (307)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~ 281 (307)
.--.++++.....-+.|+.. ....++..+.+ +.+++..+.+.+....+.+ =..+|..++....+.++...|.+
T Consensus 242 ~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 242 PPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred cHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22233333333333455533 34445555554 5566666665554432211 12468889999999999999999
Q ss_pred HHHHhhhcC
Q 021791 282 LKKKLDEES 290 (307)
Q Consensus 282 ~~~~~~~~~ 290 (307)
.+..+.-..
T Consensus 320 ~l~lL~~ld 328 (549)
T PF07079_consen 320 YLALLKILD 328 (549)
T ss_pred HHHHHHhcC
Confidence 988775443
No 264
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=2 Score=35.36 Aligned_cols=83 Identities=8% Similarity=-0.065 Sum_probs=40.2
Q ss_pred hcCcHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH---HHHHhhchh
Q 021791 202 ALNRMDMVREIWNHVKGS---ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YRGLIQSDM 275 (307)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~g~ 275 (307)
+.|++..|.+.+.+.... +..|+...|.....+..+.|+.++|+.-.++..+- |+.-...+ ..++...++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555543 22233444544555555566666666655555432 22222222 223444555
Q ss_pred HHHHHHHHHHhhh
Q 021791 276 LRTWRRLKKKLDE 288 (307)
Q Consensus 276 ~~~a~~~~~~~~~ 288 (307)
+++|.+-+++..+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555433
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.67 E-value=0.1 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=15.5
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 228 YTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 228 ~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
|..|...|.+.|++++|+.++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666667777766666643
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.65 E-value=1.9 Score=34.86 Aligned_cols=229 Identities=9% Similarity=-0.006 Sum_probs=130.5
Q ss_pred HHhcCchhhHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH----HHHHhcC-CCCCHHH
Q 021791 14 WCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF----DEMRVRG-IEPDVTS 86 (307)
Q Consensus 14 ~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~ 86 (307)
+....+.++|+..|..-..+ +..-.-.++..+..+.++ .+++++++..- +-..+.. -..--..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~----------~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE----------MGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566778888887776554 111123455666666666 55665554332 1111110 0111234
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHhhH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEK-GICP---TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-----SPSAETY 157 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~ 157 (307)
|..+.+++-+.-++.+++.+-..-... |..| ......++..++...+.++++++.|+...+... .....++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 556666666666677777666555433 2222 123345567777888889999999988765311 1223567
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCC-C-CccHH------HHHHHHHHHHhcCcHHHHHHHHHHHhh----CCCCC-C
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKEDDL-C-VPNIH------TYNILIGMFMALNRMDMVREIWNHVKG----SELGL-D 224 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~ 224 (307)
-.+-..|.+..++++|.-+.....+.-. . ..|.. ....+.-++...|.+..|.+.-++..+ .|-.+ .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7888888899999888777665543210 0 11211 122334455567777777766665443 34222 1
Q ss_pred HHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 225 LDSYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
......+.+.|...|+.+.|+.-|+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334566778888898888887777653
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.46 E-value=1.9 Score=34.06 Aligned_cols=234 Identities=12% Similarity=0.115 Sum_probs=122.1
Q ss_pred HhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC-----CcchhhHHHHHHHHHHHHHHHh-cCCCCCH----
Q 021791 15 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-----HPNERFEKTIRNAEKVFDEMRV-RGIEPDV---- 84 (307)
Q Consensus 15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~---- 84 (307)
.+.|+++.|..++.+........++.....|-..|...|.- .........+++|.++++...+ ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999987642122333333333333332210 0111113334555555544111 1223333
Q ss_pred -HHHHHHHHHHHhcCCch---hHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791 85 -TSFSIVLHVYSRAHKPQ---LSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF 160 (307)
Q Consensus 85 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (307)
.++..++.++...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...-. .....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 46777888888877755 455666666544322 355666667777778999999999999997622 133445555
Q ss_pred HHHH---hcCCChhHHHHHHHHHhhcCCCCccHH-HHHH-HH-HH--HHhcCc------HHHHHHHHHHHhh-CCCCCCH
Q 021791 161 FKEY---RGRKDANGAMKLYRQMKEDDLCVPNIH-TYNI-LI-GM--FMALNR------MDMVREIWNHVKG-SELGLDL 225 (307)
Q Consensus 161 ~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~-l~-~~--~~~~~~------~~~a~~~~~~~~~-~~~~~~~ 225 (307)
+..+ .... ...+...+..+..... .|... .... ++ .. ..+.++ .+....+++.+.. .+.+.+.
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~-~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRF-KSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 5444 4433 3455555555544432 33332 1111 11 11 112111 4444445553332 2223344
Q ss_pred HhHHHHH-------HHHHccCcHHHHHHHHHHHH
Q 021791 226 DSYTMLI-------HGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 226 ~~~~~li-------~~~~~~g~~~~a~~~~~~~~ 252 (307)
.+-..+. ..+.+.++++.|...|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4433322 33456789999999998544
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.28 E-value=1.9 Score=33.12 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLC 130 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 130 (307)
.|++++|.+.|+.+.... -+-...+-..++.++.+.++.+.|...+++..+.-......-|..-|.+++
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 577888888888887652 122345566677778888888888888888776633333334444455444
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.18 E-value=1.2 Score=30.35 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=58.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcC
Q 021791 128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI---HTYNILIGMFMALN 204 (307)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 204 (307)
+.+..|+.+.|++.|.+....-++ ....||.-.+++.-.|+.++|++=+++..+... ..+. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhC
Confidence 456677777777777777665322 566777777777777777777777777666543 2222 12333334456677
Q ss_pred cHHHHHHHHHHHhhCC
Q 021791 205 RMDMVREIWNHVKGSE 220 (307)
Q Consensus 205 ~~~~a~~~~~~~~~~~ 220 (307)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777766655
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.11 E-value=5.3 Score=37.70 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCchhhHHHHH----HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH
Q 021791 116 CPTVATYTSVV----KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH 191 (307)
Q Consensus 116 ~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (307)
.|+...+..+. ..+.....+++|--.|+..-+. ...+.+|..+|+|.+|+.+..++..... --..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d--e~~~ 1000 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD--ELVI 1000 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH--HHHH
Confidence 34554444444 4445566777777766655321 2356778888899998888887754321 1111
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
+-..|+.-+...++.-+|-++..+.... ....+..|++...|++|+.+....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2256777777888888888887776653 123344555666677777765544
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.98 E-value=0.044 Score=38.31 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555556666666666666665554445666666777777666656665555511 11222334444555555
Q ss_pred hhHHHHHHHHH
Q 021791 170 ANGAMKLYRQM 180 (307)
Q Consensus 170 ~~~a~~~~~~~ 180 (307)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555554443
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.88 E-value=1.5 Score=30.44 Aligned_cols=54 Identities=6% Similarity=-0.057 Sum_probs=22.7
Q ss_pred cCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 166 GRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
+.|++++|.+.|+.+...-.. +-...+--.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444444444444444443210 111223334444444444444444444444443
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=2.4 Score=32.38 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791 6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT 85 (307)
Q Consensus 6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (307)
.|..-..+|...+++++|...+.+..+. .+-+...|. + .+.+++|..+.+++.+. +--..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh----A-------------AKayEqaamLake~~kl--sEvvd 92 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH----A-------------AKAYEQAAMLAKELSKL--SEVVD 92 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH----H-------------HHHHHHHHHHHHHHHHh--HHHHH
Confidence 4445555666666677766665555421 111111111 1 34455666666666544 21233
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC--CCHhhHHHH
Q 021791 86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVS--PSAETYNCF 160 (307)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l 160 (307)
.|+-....|...|.++.|-..+++.-+. ...-++++|+++|++.... +-+ .-...+..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 4556666677777776666555544321 2233445555555543321 110 112233444
Q ss_pred HHHHhcCCChhHHHHHHHHHhhc----CCCCcc-HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC---CCCCHHhHHHHH
Q 021791 161 FKEYRGRKDANGAMKLYRQMKED----DLCVPN-IHTYNILIGMFMALNRMDMVREIWNHVKGSE---LGLDLDSYTMLI 232 (307)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li 232 (307)
-+.+.+...+.+|-..+.+-... .. .++ -..|...|-.+.-..++..|.+.++...+.+ -+-+..+...|+
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 45566666666555444332111 10 122 2334555556666778888888888754432 223556777788
Q ss_pred HHHHccCcHHHHHHHH
Q 021791 233 HGLCEKQKWKEACQYF 248 (307)
Q Consensus 233 ~~~~~~g~~~~a~~~~ 248 (307)
.+|- .|+.+++..++
T Consensus 236 ~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhc-cCCHHHHHHHH
Confidence 7775 56777666654
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.67 E-value=2 Score=31.31 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHH--
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNC-- 159 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 159 (307)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+.....+....--.+ |...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688999999999999999999999988754433 3456778888899999999998888776532121 1111111
Q ss_pred HH--HHHhcCCChhHHHHHHHHHhh
Q 021791 160 FF--KEYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 160 l~--~~~~~~~~~~~a~~~~~~~~~ 182 (307)
.. -.+...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 11 123456788887777766643
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=3.1 Score=33.42 Aligned_cols=151 Identities=5% Similarity=-0.023 Sum_probs=71.0
Q ss_pred cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 021791 17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR---GIEPDVTSFSIVLHV 93 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~ 93 (307)
.|++.+|-..++++++. .+.|...+...=.+|.. .|+.......+++.... +++-...+-..+.-+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy----------~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFY----------NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHh----------ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34455555555555543 33344455555555555 33344444444444332 111122222333334
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCCh
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
+...|-+++|++.-++..+.+. .|......+...+-..|++.++.+.+.+-... +--.-.+-|-...-.+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 4456666666666666655542 25555555666666666666666655443221 0000011121222234455666
Q ss_pred hHHHHHHHH
Q 021791 171 NGAMKLYRQ 179 (307)
Q Consensus 171 ~~a~~~~~~ 179 (307)
+.|+.+|+.
T Consensus 264 e~aleIyD~ 272 (491)
T KOG2610|consen 264 EKALEIYDR 272 (491)
T ss_pred hHHHHHHHH
Confidence 777776654
No 276
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.66 E-value=0.65 Score=29.52 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (307)
++.+....+.|++....+.+++|.+.+++..|.++|+.+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444443
No 277
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=3.8 Score=33.88 Aligned_cols=153 Identities=9% Similarity=-0.025 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhh-------------HHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT-------------YTSVVKC 128 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~ 128 (307)
.+++++|.+.--...+.. ..+....-.--.++...++.+.+...|++..+.+ |+... +..=.+-
T Consensus 182 ~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred cccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 566667766666555542 1122222222234445677888888888887764 33222 2222334
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc
Q 021791 129 LCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR 205 (307)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (307)
..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--++....+ +.=...|..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence 56889999999999998875 345666778777888899999999999888887653 1222333444455667789
Q ss_pred HHHHHHHHHHHhhC
Q 021791 206 MDMVREIWNHVKGS 219 (307)
Q Consensus 206 ~~~a~~~~~~~~~~ 219 (307)
|++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988887765
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.46 E-value=3 Score=32.74 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHhhHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR-----NGVSPSAETYNCFF 161 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 161 (307)
+..++..+...|+.+.+...++++..... .+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 34445555555666666666666665543 2555666666666666666666666665543 25555555544444
Q ss_pred HH
Q 021791 162 KE 163 (307)
Q Consensus 162 ~~ 163 (307)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 279
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.34 E-value=1.2 Score=32.76 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCC
Q 021791 93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 169 (307)
..++.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455565 678888888888776556666556666555 67899999999887753 446789999999999999999
Q ss_pred hhHHH
Q 021791 170 ANGAM 174 (307)
Q Consensus 170 ~~~a~ 174 (307)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99875
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=3 Score=31.87 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc----CCCCccHHHHHHHH
Q 021791 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED----DLCVPNIHTYNILI 197 (307)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~ 197 (307)
|+.-...|..+|.++.|-..+++.-+ .....++++|++++.+.... +....-...+....
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 44444555566655555555544332 12344556666666554321 11012233455566
Q ss_pred HHHHhcCcHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CCcHhhHHHHHHH
Q 021791 198 GMFMALNRMDMVREIWNHVKG----SELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL---LPQKVTFETLYRG 269 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~ 269 (307)
+.+.+...+++|-..+.+-.. ..--++ ...|-..|-.+....++..|...++.--+-+- .-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 667777777777665543221 111122 23455566667777899999999998654421 2345678888877
Q ss_pred HhhchhHHHHHHHHH
Q 021791 270 LIQSDMLRTWRRLKK 284 (307)
Q Consensus 270 ~~~~g~~~~a~~~~~ 284 (307)
| ..|+.+++..++.
T Consensus 238 y-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVLS 251 (308)
T ss_pred h-ccCCHHHHHHHHc
Confidence 6 4677788777653
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.16 E-value=0.98 Score=28.74 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791 66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK 127 (307)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 127 (307)
-+..+-++.+....+.|++....+.+++|-+.+|+..|.++++..+.+.- .+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHH
Confidence 34555566666666777888888888888888888888888877764421 13334544443
No 282
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.13 E-value=4.6 Score=33.89 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=106.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH-HH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY-NI 195 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 195 (307)
-..+|...++.-.+..-++.|..+|-++.+.+ ..+++..++++|..++ .|++.-|.++|+.-... -||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 45677888888888889999999999999888 5677788888888664 57888999999987776 3454444 55
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791 196 LIGMFMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 267 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 267 (307)
.+..+...++-+.|..+|+....+ +..+ ...|..+|+-=..-|+...+..+=++|... .|-..+.....
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 677788899999999999965543 1213 457888998888889988888887777654 44444433333
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.07 E-value=0.14 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=10.7
Q ss_pred CccHHHHHHHHHHHHhcCcHHHH
Q 021791 187 VPNIHTYNILIGMFMALNRMDMV 209 (307)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a 209 (307)
|-|..+|..+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.05 E-value=2.3 Score=30.16 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=65.0
Q ss_pred hhHHHHHHH---HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 021791 155 ETYNCFFKE---YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTML 231 (307)
Q Consensus 155 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (307)
.+.+.|+.. -.+.++.+.+..++..+.-...-.+...++. ...+...|+|.+|+.+|+.+.... |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 344444443 4577888999999988877642123333333 334668899999999999987763 333333444
Q ss_pred HHHHH-ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791 232 IHGLC-EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 281 (307)
Q Consensus 232 i~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 281 (307)
+..|. ..|+.+ =..+-+++.+.+-.|+.. .+++.+....+...|..
T Consensus 84 lA~CL~~~~D~~-Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPS-WRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChH-HHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 44443 333332 122233455544333332 34555555544444443
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.96 E-value=0.38 Score=23.65 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
+.+|..+..+|...|++++|+..|++.++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357889999999999999999999999875
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.93 E-value=0.11 Score=36.22 Aligned_cols=86 Identities=7% Similarity=0.116 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791 124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL 203 (307)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (307)
.++..+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++.... .-...+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--------yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--------YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--------S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--------cCHHHHHHHHHhc
Confidence 35667777888888888888888776666788889999999999888888877772211 2234566777777
Q ss_pred CcHHHHHHHHHHHh
Q 021791 204 NRMDMVREIWNHVK 217 (307)
Q Consensus 204 ~~~~~a~~~~~~~~ 217 (307)
|.++++..++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777777766544
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.86 E-value=4.1 Score=32.56 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=91.8
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHhcCCCh
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCS--CG----RIEDAEELLGEMVRNGVS---PSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 170 (307)
++..+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|++..+- ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788999999998887776653333332 22 345689999999986432 344455555543 34443
Q ss_pred ----hHHHHHHHHHhhcCCCCccH-HHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc---
Q 021791 171 ----NGAMKLYRQMKEDDLCVPNI-HTYNILIGMFMALNR--MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK--- 240 (307)
Q Consensus 171 ----~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 240 (307)
+.+..+|+.+.+.+..+-|. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 55777788888766534443 344444443332222 45788889999999998888777766433322222
Q ss_pred -HHHHHHHHHHHHHc
Q 021791 241 -WKEACQYFVEMIEK 254 (307)
Q Consensus 241 -~~~a~~~~~~~~~~ 254 (307)
.+...++.+.+.+.
T Consensus 236 ~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHhhC
Confidence 33444444444443
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.84 E-value=1.6 Score=28.19 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791 208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 267 (307)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 267 (307)
+..+-++.+....+.|++......+++|.+-+++..|+++|+-...+ ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 44555555555666666666666666666666666666666665544 222222455444
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.77 E-value=0.34 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 4 VKMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
..+++.|...|...|++++|..++++....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 468899999999999999999999988653
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=2.8 Score=29.77 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=22.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 131 SCGRIEDAEELLGEMVRNGVSPSAETY-NCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
+.++.+++..++..+.-. +|..... ..-...+...|++.+|.++|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 444555555555555442 2221111 11122244555555555555555444
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.47 E-value=7.2 Score=34.44 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHH--HH-HHhcCCchhHHHHHHHHHH-------cCCCCchhhHHHHHHHHHhcC
Q 021791 64 TIRNAEKVFDEMRVRGIEPDVTSFSIVL--HV-YSRAHKPQLSLDKLNFMKE-------KGICPTVATYTSVVKCLCSCG 133 (307)
Q Consensus 64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~ 133 (307)
....+.++++...+.|.. ........+ .+ +....|.+.|+.+|+...+ .| ......-+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 357888999888887622 222222222 22 4456789999999988877 44 3345666777777643
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH--hcCc
Q 021791 134 -----RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG-RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM--ALNR 205 (307)
Q Consensus 134 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 205 (307)
+.+.|..++...-..|.+ +.......+..... ..+...|.++|...-+.|. +...-+.+++.... ...+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCC
Confidence 567799999988887653 54444333322222 2467899999999988873 43333333333222 3347
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791 206 MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 256 (307)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 256 (307)
.+.|...+.+.-+.| .|...--...+..+.. ++++.+...+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 888999999988887 3332222223333333 666666666666655543
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=1.8 Score=34.30 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=44.5
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH
Q 021791 114 GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG---VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI 190 (307)
Q Consensus 114 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (307)
|...+..+...++..-....+++.++..+-++...- ..|+. +-..+++. +..-++++++.++..=...|. -||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGi-F~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGI-FPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhcc-ccch
Confidence 333344444444444444455555555555554320 01111 11112222 122344455555555445554 4555
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 191 HTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
.+++.+++.+.+.+++.+|..+.-.|.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555555555555555555444443
No 293
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.16 E-value=3.8 Score=30.55 Aligned_cols=225 Identities=16% Similarity=0.059 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHH
Q 021791 63 KTIRNAEKVFDEMRVRGIE-PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEE 140 (307)
Q Consensus 63 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 140 (307)
+....+...+......... ............+...++...+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455566666665554322 13577788888899999999999988887752 234466677778888888899999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHH-HHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 141 LLGEMVRNGVSPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
.+.........+ ......... .+...++++.+...+.+....... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999988764443 222233333 788999999999999998663210 12344445555557788999999999999887
Q ss_pred CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
.........+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 632213677888888889999999999999999875 333 3444545555556777888888877765443
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.15 E-value=7.9 Score=34.19 Aligned_cols=178 Identities=15% Similarity=0.035 Sum_probs=110.6
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHH-----HHhcCChHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHhcC
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKC-----LCSCGRIEDAEELLGEMVR-------NGVSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 167 (307)
...+.++++...+.|.. .....+..+ +....+.+.|...|+.... .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 45788888888887632 222222222 4466799999999998876 44 334566677777664
Q ss_pred C-----ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----c
Q 021791 168 K-----DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA-LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC----E 237 (307)
Q Consensus 168 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 237 (307)
. +.+.|..++...-..+ .|+...+-..+..... ..+...|.+.|...-..|.. ..+-.+..+|. -
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 3 5677999999998887 5666655444444333 35678999999999988743 33333332222 3
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
..+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 457889999999998887 3433222223333333 55555555444444443
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.97 E-value=0.6 Score=22.80 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
..|..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999875
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.92 E-value=0.25 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHhcCChHHH
Q 021791 119 VATYTSVVKCLCSCGRIEDA 138 (307)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a 138 (307)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.89 E-value=0.56 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 226 DSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 226 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.66 E-value=2.5 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791 67 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK 127 (307)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 127 (307)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-- +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 4555666666667778888888888888888888888888877765522 12225655544
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.64 E-value=8.5 Score=33.47 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCchhHHHHHHHHHHc-CCC-CchhhHHHHHHHHHhcCChHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-RAHKPQLSLDKLNFMKEK-GIC-PTVATYTSVVKCLCSCGRIEDA 138 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a 138 (307)
.|..+.+.++|++-++. ++.+...|...+..+. ..|+.+...+.|+..... |.. .+...|...|.--...+++...
T Consensus 92 lg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 55666667777666543 5555555655554443 345555556666555443 211 1334455555555556666666
Q ss_pred HHHHHHHHh
Q 021791 139 EELLGEMVR 147 (307)
Q Consensus 139 ~~~~~~~~~ 147 (307)
..+++++++
T Consensus 171 ~~iyeRile 179 (577)
T KOG1258|consen 171 ANIYERILE 179 (577)
T ss_pred HHHHHHHHh
Confidence 666666554
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.41 E-value=4.6 Score=29.93 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=49.9
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCcc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPN-----IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK 238 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (307)
+...|++++|..-|......- ++. +..|..-..++.+.+.++.|+.-.....+.+.. .......-..+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 445566666666666655542 221 233444455666777777777766666655321 222222334456666
Q ss_pred CcHHHHHHHHHHHHHc
Q 021791 239 QKWKEACQYFVEMIEK 254 (307)
Q Consensus 239 g~~~~a~~~~~~~~~~ 254 (307)
..+++|+.=|+++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777764
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.38 E-value=0.73 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVR 147 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (307)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555444
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.86 E-value=6.7 Score=30.88 Aligned_cols=115 Identities=9% Similarity=0.064 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcCC--ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 021791 135 IEDAEELLGEMVR-NGVSPSAETYNCFFKEYRGRK--DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVRE 211 (307)
Q Consensus 135 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (307)
+.+|+.+|+.... ..+--|..+...+++...... ....-.++.+.+...-.-.++..+...++..++..++|..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 123335666666666655421 2233333333343331115666777777778888888888887
Q ss_pred HHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791 212 IWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQYFV 249 (307)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 249 (307)
+|+..... +..-|...|..+|......|+..-..++..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77776654 445577778888888777777654444433
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.62 E-value=9.8 Score=32.35 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791 88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (307)
......+...|+++.+.+.+...... +.....+...+++...+.|+++.|..+-.-|....+. ++.........-...
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence 33344566788888888887666543 2235567788888888888888888888888776665 444444444444556
Q ss_pred CChhHHHHHHHHHhhcC
Q 021791 168 KDANGAMKLYRQMKEDD 184 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~ 184 (307)
|-++++...|+++...+
T Consensus 405 ~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 77788888888887665
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=7.8 Score=33.87 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=66.0
Q ss_pred HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 021791 94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGA 173 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (307)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|....+ |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777777655432 556688888888888888888888776543 34566666777777666
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 174 MKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
..+-....+.+ ..|... -+|...|+++++.+++..-.
T Consensus 712 ~~la~~~~~~g--~~N~AF-----~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 712 AVLASLAKKQG--KNNLAF-----LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhc--ccchHH-----HHHHHcCCHHHHHHHHHhcC
Confidence 66666666655 344332 23445778888777766543
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.28 E-value=0.71 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=12.0
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc
Q 021791 231 LIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 231 li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
+..++.+.|++++|...|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444455555555555555543
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.10 E-value=9.3 Score=31.26 Aligned_cols=65 Identities=6% Similarity=-0.061 Sum_probs=47.6
Q ss_pred CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---cHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 224 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
...+|..++..+.+.|.++.|...+.++.+.+... .+.....-+..+...|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578888888889999999999888887653211 334455556677788888888888877766
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.77 E-value=10 Score=32.21 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=76.8
Q ss_pred hcCCChhHHHHHHHHH-hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791 165 RGRKDANGAMKLYRQM-KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE 243 (307)
Q Consensus 165 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 243 (307)
...|+.-.|-+-+... ..... -|+.....+. .....|+++.+...+....+. +.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQ-DPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCC-CchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 4456665554444333 33322 4444433333 345678888888887766543 23356677888888888889999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCC
Q 021791 244 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 294 (307)
Q Consensus 244 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 294 (307)
|..+-..|+...+. ++.......-.....|-++++.-.++++-..+.+-+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 99888888876553 333333333344566778888888887755444433
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.77 E-value=1.3 Score=21.49 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=6 Score=27.70 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=33.4
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
...++++++..++..+.-...-.+...++... .+...|+|++|..+|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34677777777777776553212333334333 3456778888888888777653
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.98 E-value=14 Score=31.78 Aligned_cols=181 Identities=10% Similarity=0.030 Sum_probs=110.0
Q ss_pred CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791 37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC 116 (307)
Q Consensus 37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (307)
.|-....+++..+.. .....-.+.+..+|..-| -+-..+..++.+|... ..+.-..+|+++.+..+.
T Consensus 64 l~d~~l~~~~~~f~~----------n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn 130 (711)
T COG1747 64 LDDSCLVTLLTIFGD----------NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN 130 (711)
T ss_pred ccchHHHHHHHHhcc----------chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch
Confidence 344555556666655 556666777777777664 3566777788888777 456677778877777553
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH
Q 021791 117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-----PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH 191 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (307)
|...-..|...|-+ ++.+.+...|.++...=++ .-...|..+... -..+.+..+.+...+........-..
T Consensus 131 -Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~V 206 (711)
T COG1747 131 -DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSV 206 (711)
T ss_pred -hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHH
Confidence 44333444444444 7777777777766544221 012345444432 23556666777666666544344455
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL 235 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 235 (307)
.+..+-.-|....++++|++++..+.+..-+ |..+-..++.-+
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 5666667777788888888888888776533 555555555544
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.95 E-value=0.99 Score=21.74 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888899999999999999876
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.80 E-value=5.5 Score=29.98 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=59.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC--CCCCHHhHHHHHH
Q 021791 156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE--LGLDLDSYTMLIH 233 (307)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 233 (307)
|.+..++.+.+.+...+++...+.-.+.. +.|...-..+++.++-.|+|++|..-++-.-... ..+....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 45566778888999999999999888875 6677777889999999999999998887766542 2233456666665
Q ss_pred H
Q 021791 234 G 234 (307)
Q Consensus 234 ~ 234 (307)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.67 E-value=9.9 Score=29.66 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=66.2
Q ss_pred CchhHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHhcCCCh
Q 021791 99 KPQLSLDKLNFMKEKGICPTVA---TYTSVVKCLCSCGRIEDAEELLGEMVRN-----GVSPSAETYNCFFKEYRGRKDA 170 (307)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~ 170 (307)
++++|+.-|++..+....-..+ +...++..+.+.+++++..+.|.++... .-.-+..+.|.++..-....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4455555555554432111222 2233455555556666555555554321 0111334445555544444444
Q ss_pred hHHHHHHHHHhhc----CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-----------CCHHhHHHHHHHH
Q 021791 171 NGAMKLYRQMKED----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG-----------LDLDSYTMLIHGL 235 (307)
Q Consensus 171 ~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~ 235 (307)
+-...+++...+. .....--.|-+-|...|...+.+.+..++++++....-. --...|..=|+.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4433333322211 000111122234455555555555555555554421000 0123455555666
Q ss_pred HccCcHHHHHHHHHHHH
Q 021791 236 CEKQKWKEACQYFVEMI 252 (307)
Q Consensus 236 ~~~g~~~~a~~~~~~~~ 252 (307)
....+-++...++++.+
T Consensus 202 T~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 65555555556665554
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.66 E-value=12 Score=30.47 Aligned_cols=137 Identities=9% Similarity=0.071 Sum_probs=80.5
Q ss_pred CchhhHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 117 PTVATYTSVVKCLCSCGR------------IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
-|..+|-.++..=-..-. .+.-+.++++..+.+. -+......+|..+.+..+.++..+-++.+....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 367777777754322211 2345667777766643 366677777777777777777788888887764
Q ss_pred CCCccHHHHHHHHHHHHh---cCcHHHHHHHHHHHhhC------CC-C---CCHH-------hHHHHHHHHHccCcHHHH
Q 021791 185 LCVPNIHTYNILIGMFMA---LNRMDMVREIWNHVKGS------EL-G---LDLD-------SYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~-~---~~~~-------~~~~li~~~~~~g~~~~a 244 (307)
+-+...|...+..... .-.++....+|.+.... +. . +... .+..+...+...|..+.|
T Consensus 96 --~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 96 --PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred --CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 4466677766666544 23466666666654431 11 0 0001 122222333466777777
Q ss_pred HHHHHHHHHcCC
Q 021791 245 CQYFVEMIEKGL 256 (307)
Q Consensus 245 ~~~~~~~~~~~~ 256 (307)
+.+++-+++.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 777777776654
No 315
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=88.48 E-value=5.4 Score=35.27 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=66.7
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS 86 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (307)
+|+.+|...|++.++.++++.+... |-+-=...+|..|+...+.|.+.- ....+.+.+.+++..- .-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l----~~~~~~~~~~lq~a~l---n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL----TDVLSNAKELLQQARL---NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHhhc---CCcchH
Confidence 7899999999999999999999765 444456788889999999876654 4555677777776653 347778
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFM 110 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~ 110 (307)
|..|+++-...-+-....-++.++
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHH
Confidence 887777655433333333333333
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.42 E-value=8.3 Score=28.45 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhcCCChhHHHHHHHHHhhcCC-CCccHHHHHH
Q 021791 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN--CFFKEYRGRKDANGAMKLYRQMKEDDL-CVPNIHTYNI 195 (307)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 195 (307)
...|..++.... .+.+ +.....+.+...+.+-.-.++. .+...+...+++++|..-++....... ......+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 334555555443 2333 4444445555432111111122 233456777888888888877665321 0001112223
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791 196 LIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 255 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 255 (307)
|.+.....|.+|+|...++.....+. .......--+.+...|+-++|..-|.+.++.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45556677888888888877766532 22223334466777888888888888887764
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.23 E-value=9.8 Score=29.84 Aligned_cols=91 Identities=8% Similarity=-0.042 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh-
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR- 165 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 165 (307)
+..=|++++..++|.+++...-+--+.--+....+...-|-.|.+.+.+..+.++-..-...--.-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445677778888887777655443332223445566666777888888887777666554322223344666655554
Q ss_pred ----cCCChhHHHHHH
Q 021791 166 ----GRKDANGAMKLY 177 (307)
Q Consensus 166 ----~~~~~~~a~~~~ 177 (307)
=.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 357888887776
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.22 E-value=16 Score=31.47 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK 162 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (307)
|.....+++..+.....+.-+..+-.+|...|- +-..+..++.+|... ..++-..+|+++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 334444555555555555555555555555432 444555555555555 445555555555554332 3333333333
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCC----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHc
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDLC----VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCE 237 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 237 (307)
.|.+ ++.+.+..+|..+...-+. ..=...|.-|... -..+.+....+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555555555554433210 0001123333321 123344444444444332 222222333334444555
Q ss_pred cCcHHHHHHHHHHHHHc
Q 021791 238 KQKWKEACQYFVEMIEK 254 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~ 254 (307)
..++++|++++...++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55666666666655544
No 319
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.14 E-value=13 Score=30.42 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCchh-hH-----HHHH
Q 021791 62 EKTIRNAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICPTVA-TY-----TSVV 126 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~ll 126 (307)
.+.++++++.|+....-. ......++..|-..|.+..|.++|.-+.....+. ++. |.. -| -.|.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHH
Confidence 677888888887765431 1123457888888899998988887766554332 322 211 12 2233
Q ss_pred HHHHhcCChHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791 127 KCLCSCGRIEDAEELLGEMVR----NGVSPS-AETYNCFFKEYRGRKDANGAMKLYRQMK 181 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (307)
-++...|..-+|.+.-++..+ .|-.+. ......+.+.|...|+.+.|+.-|++..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 455667777777776665543 343322 2344566778888999988888877654
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.13 E-value=19 Score=32.32 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-cCCCCc--hhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHh--
Q 021791 82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE-KGICPT--VATYTSVVKCLC-SCGRIEDAEELLGEMVRNGVSPSAE-- 155 (307)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 155 (307)
.+...|..||.. |++.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.....-+++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 355667766644 5555655553 333332 334455555555 6778888888888765443222221
Q ss_pred ---hHHHHHHHHhcCCChhHHHHHHHHHhhcCCC---CccHHHHHHH-HHHHHhcCcHHHHHHHHHHHhhCC---CCCCH
Q 021791 156 ---TYNCFFKEYRGRKDANGAMKLYRQMKEDDLC---VPNIHTYNIL-IGMFMALNRMDMVREIWNHVKGSE---LGLDL 225 (307)
Q Consensus 156 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 225 (307)
.-..++..+.+.+... |...+++..+.-.- .+-...|..+ +..+...++...|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234556666666665 88888776554320 1222233333 333333478888888887766532 23344
Q ss_pred HhHHHHHHHHH--ccCcHHHHHHHHHHHHHcCC---------CCcHhhHHHHHHHH--hhchhHHHHHHHHHHhh
Q 021791 226 DSYTMLIHGLC--EKQKWKEACQYFVEMIEKGL---------LPQKVTFETLYRGL--IQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 226 ~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 287 (307)
..+..++.+.. ..+..+++.+.++++..... .|--.+|..+++.+ ...|+++.+.+.++.+.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555543 44556777777777644321 23445666666654 46677667776666553
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.13 E-value=1.9 Score=20.96 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=16.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666554
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.02 E-value=10 Score=33.97 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG-IEPDVTSFSI 89 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 89 (307)
...+.-+|+|+.|.+.+-+ ..+...+...+...+..+.-.+ -..... ..+.... -.|...-+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~----------~~~~~~---~~lls~~~~~~~~ln~ar 329 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLR----------VSDSSS---APLLSVDPGDPPPLNFAR 329 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------------------HHH
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCC----------CCCccc---cceeeecCCCCCCcCHHH
Confidence 4556667888888888876 2223445555555554433311 111100 1221111 0111255777
Q ss_pred HHHHHHh---cCCchhHHHHHHHHHHc
Q 021791 90 VLHVYSR---AHKPQLSLDKLNFMKEK 113 (307)
Q Consensus 90 ll~~~~~---~~~~~~a~~~~~~~~~~ 113 (307)
||..|.+ ..++..|.++|--+...
T Consensus 330 LI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 330 LIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 8888876 45677788877666554
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.91 E-value=1.6 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHHHccCcHHHHHHHHHHHHH
Q 021791 232 IHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 232 i~~~~~~g~~~~a~~~~~~~~~ 253 (307)
..+|...|+.+.|..++++.+.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.87 E-value=16 Score=31.22 Aligned_cols=246 Identities=9% Similarity=0.060 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 021791 22 MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG-IEP-DVTSFSIVLHVYSRAHK 99 (307)
Q Consensus 22 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~ 99 (307)
....+|++..+. .|+...|+..|..|...-.... ...+.....+|+.....+ ..+ ....|..+.-.+.....
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r----~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~ 373 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLR----GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE 373 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch
Confidence 345667766654 5677888888887766322111 224555666666665543 333 34456666666666554
Q ss_pred chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC-h--hHHH
Q 021791 100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG-RIED-AEELLGEMVRNGVSPSAETYNCFFKEYRGRKD-A--NGAM 174 (307)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~a~ 174 (307)
..++ -..+...++..|...|..-+....+.. +++- ...++..+...-..+....|+... .++ + ..-.
T Consensus 374 ~r~~---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 374 AREV---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HhHH---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 3332 222222334446666766666555332 2222 223334444332223333444333 122 1 1122
Q ss_pred HHHHHHhhcCCCCccHHHH-HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH---HccCcHHHHHHHHHH
Q 021791 175 KLYRQMKEDDLCVPNIHTY-NILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL---CEKQKWKEACQYFVE 250 (307)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~ 250 (307)
.++......+ .|+..++ +.++..+...|-..+|.+++..+... .+|+...|..+|+.= ...| ..-+..+++.
T Consensus 446 ~Ii~a~~s~~--~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~ 521 (568)
T KOG2396|consen 446 LIISALLSVI--GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDR 521 (568)
T ss_pred HHHHHHHHhc--CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHH
Confidence 2333333333 4555555 56788888899999999999999887 467888888888643 2233 6778888988
Q ss_pred HHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 251 MIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 251 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
|... | .|+..|.-.+.--...|..+.+-.++.+..
T Consensus 522 a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 522 ALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 8765 5 677778777777678888888888776643
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.84 E-value=5.7 Score=29.89 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC-CCccHHHHHHHHHH
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL-CVPNIHTYNILIGM 199 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~ 199 (307)
|.+..++.+.+.+...+++...++-.+..+. |..+-..+++.++-.|++++|..-++-.-.... ..+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556677888999999999998887776544 677788899999999999999887776654421 13445566666643
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.73 E-value=1.9 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998764
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.62 E-value=14 Score=32.36 Aligned_cols=82 Identities=6% Similarity=0.062 Sum_probs=44.0
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791 153 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLI 232 (307)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (307)
+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 445566666666666666666665554432 23344455555555555555554444432 12333
Q ss_pred HHHHccCcHHHHHHHHHH
Q 021791 233 HGLCEKQKWKEACQYFVE 250 (307)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~ 250 (307)
-+|...|+++++.+++.+
T Consensus 729 ~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 445566777777766654
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.47 E-value=7.9 Score=27.14 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 131 SCGRIEDAEELLGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
..++++++..+++.|.-.-+. +...++... .+...|++++|.++|+++.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 355666666666665543111 112233222 2455666666666666666553
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.43 E-value=1.8 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.4
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCC
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGV 35 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 35 (307)
.+..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 367899999999999999999997543
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.26 E-value=9.4 Score=27.78 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 021791 20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV-TSFSIVLHVYSRAH 98 (307)
Q Consensus 20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~ 98 (307)
|+.|.+.++.-...+ +.|...++..-.++....++.+.......+++|..-|++.... .|+- .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 456666666544432 3466666666666666544444333346677788878777765 4443 45666666665433
Q ss_pred ----C-------chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 021791 99 ----K-------PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG 149 (307)
Q Consensus 99 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 149 (307)
+ +++|...|+...+. .|+...|+.-+.... +|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2 33444444444443 577777777666643 3555555555543
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.19 E-value=4.7 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=29.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCcH--hhHHHHHHHHhhchhHHHHHHHH
Q 021791 237 EKQKWKEACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLK 283 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~ 283 (307)
..++.++|+..|...++.-..|.. .++..+++++...|+++++..+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777665322221 25666777777777777666543
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.87 E-value=11 Score=28.05 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCcHH
Q 021791 130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFMALNRMD 207 (307)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 207 (307)
.+.| -+.|.+.|-++...+.--++.....+...| ...+.+++..++....+... -.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3444 467888888888776554555555555555 47888999999988766432 1578999999999999999999
Q ss_pred HHH
Q 021791 208 MVR 210 (307)
Q Consensus 208 ~a~ 210 (307)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=10 Score=27.49 Aligned_cols=135 Identities=9% Similarity=0.036 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV-ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE-TYNCF 160 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 160 (307)
+...|...++ ..+.+..++|+.-|..+.+.|...-+ ..-..........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455665554 34667789999999999988754211 122234455678899999999999998764444332 11111
Q ss_pred --HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 161 --FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 161 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
.-.+...|.++.+....+.+-..+. +--...-..|.-+-.+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2235678999998888888776654 444455567777788999999999999998764
No 334
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.49 E-value=14 Score=31.12 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCHHH--HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCChHHHHHHHH
Q 021791 72 FDEMRVRGIEPDVTS--FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA--TYTSVVKCLCSCGRIEDAEELLG 143 (307)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~ 143 (307)
++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 444445565555432 223444455556554 333444455444322 11233445556676666554443
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.40 E-value=1.4 Score=20.16 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=7.6
Q ss_pred HHHHHHhcCChHHHHHHH
Q 021791 125 VVKCLCSCGRIEDAEELL 142 (307)
Q Consensus 125 ll~~~~~~~~~~~a~~~~ 142 (307)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.90 E-value=18 Score=29.62 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=48.5
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL---DLDSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
.....+|..++..+.+.|.++.|...+..+...+... .+...-.-+..+...|+..+|+..++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455678888888889999999988888887653221 334445556666778888888888887776
No 337
>PRK09687 putative lyase; Provisional
Probab=85.53 E-value=17 Score=28.94 Aligned_cols=185 Identities=13% Similarity=0.027 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCC
Q 021791 83 DVTSFSIVLHVYSRAHKP----QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI-----EDAEELLGEMVRNGVSPS 153 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 153 (307)
|...-...+.++...|+. .++...+..+... .++..+-...+.+++..+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 445555555556666553 3455555555333 23444444444444444321 122333322222 224
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791 154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN-RMDMVREIWNHVKGSELGLDLDSYTMLI 232 (307)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (307)
..+-...+.++.+.++ +.+...+-.+.+. +|..+-...+.++...+ ..+.+...+..+.. .++..+-...+
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 4454555555555555 3444444444443 22333344444444432 13344444444442 23555556666
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 233 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
.++.+.|+ ..|+..+-+..+.+. .....+.++.+.|.. +|...+..+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 66666665 345555444444321 233455566666654 3444444443
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.37 E-value=14 Score=27.94 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
+.+||.+.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+=+-+.-..+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC
Confidence 44566666666666777777777766666543323223332222 223456666665555555443
No 339
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.97 E-value=17 Score=28.70 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=61.5
Q ss_pred CchhhHHHHHHHHHh-cC-ChHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH
Q 021791 117 PTVATYTSVVKCLCS-CG-RIEDAEELLGEMVR-NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY 193 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (307)
-|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++.+..+++...........|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 355555555555544 11 12222233333322 2344566666666666666666666666666665552225566666
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH-----HhhCCCCCCHHhHHHHHH
Q 021791 194 NILIGMFMALNRMDMVREIWNH-----VKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 194 ~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~ 233 (307)
..++......|+..-..++... ++..++..+...-..+-+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 6666666666666666666554 233444444444443333
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.37 E-value=31 Score=31.07 Aligned_cols=184 Identities=12% Similarity=0.044 Sum_probs=106.8
Q ss_pred HHHHHHHHH-hcCCCCC--HHHHHHHHHHHH-hcCCchhHHHHHHHHHHcCCCCchh-----hHHHHHHHHHhcCChHHH
Q 021791 68 AEKVFDEMR-VRGIEPD--VTSFSIVLHVYS-RAHKPQLSLDKLNFMKEKGICPTVA-----TYTSVVKCLCSCGRIEDA 138 (307)
Q Consensus 68 a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a 138 (307)
|++-++.+. +..++|. ..++--+...+. ...+.+.|...+++.....-.++.. .-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 333444444 3334443 335556666665 6788999999998775443222211 2234566666766666 8
Q ss_pred HHHHHHHHhC----CCCCCHhhHHHH-HHHHhcCCChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHH--hcCcHHHH
Q 021791 139 EELLGEMVRN----GVSPSAETYNCF-FKEYRGRKDANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFM--ALNRMDMV 209 (307)
Q Consensus 139 ~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~a 209 (307)
...+++..+. +..+-...|..+ +..+...++...|.+.++.+..... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888886653 122223334444 3333344799999999988876542 1455555656665554 34556667
Q ss_pred HHHHHHHhhCC---------CCCCHHhHHHHHHHH--HccCcHHHHHHHHHHHH
Q 021791 210 REIWNHVKGSE---------LGLDLDSYTMLIHGL--CEKQKWKEACQYFVEMI 252 (307)
Q Consensus 210 ~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 252 (307)
.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77666653211 234566777777655 46777777777666553
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.99 E-value=9.8 Score=25.79 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
+.++.+...++.|++......+++|.+.+++..|.++|+-+...
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444555566666666666666666666666666655544
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.25 E-value=12 Score=30.36 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=24.7
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (307)
|.+.|.+++|++.|....... +-|.+++..-..+|.+...+..|+.=...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 445555555555555544442 22555555555555555555544443333
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.15 E-value=21 Score=28.15 Aligned_cols=90 Identities=8% Similarity=0.129 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (307)
..=|.+++..+++.++....-+.-+.--+.........|-.|.+.+++..+.++-..-..... .-+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 445788899999999887665554432334556677777889999999999999888776543 3344457777666654
Q ss_pred -----cCcHHHHHHHH
Q 021791 203 -----LNRMDMVREIW 213 (307)
Q Consensus 203 -----~~~~~~a~~~~ 213 (307)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 69999999887
No 344
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.63 E-value=14 Score=25.85 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCcHhhHHH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSE-----LGLDLDSYTMLIHGLCEKQK-WKEACQYFVEMIEKGLLPQKVTFET 265 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ 265 (307)
..+.++......++......+++.+.-.. -..+...|+.++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34667776677777777777777664221 02355678888888866655 4456777888887788888888999
Q ss_pred HHHHHhhchh
Q 021791 266 LYRGLIQSDM 275 (307)
Q Consensus 266 l~~~~~~~g~ 275 (307)
++.++.+-..
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9988776533
No 345
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.30 E-value=8.1 Score=28.58 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
.|+..+|..++.++...|+.++|..+.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577777777777778888888887777777643
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.63 E-value=25 Score=27.98 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 021791 101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLG 143 (307)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 143 (307)
.+|+++|.-+.++.- -..+-+.++.++-...+..+|...+.
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence 478888888876632 23344556666666666666665544
No 347
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.37 E-value=6.7 Score=21.32 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=17.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791 237 EKQKWKEACQYFVEMIEKGLLPQKVTFETLY 267 (307)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 267 (307)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3445555555566665555555555555444
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.94 E-value=20 Score=26.53 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH----
Q 021791 84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY--TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY---- 157 (307)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 157 (307)
...|..++.... .+.+ +.....+.+........-.++ -.+...+...+++++|+.-++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345555555544 3333 555566666655322121222 23456688899999999999987754 222333
Q ss_pred -HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 158 -NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 158 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
-.|.+.....|.+++|+.+++.....+ ........-.+.+...|+-++|+.-|+.....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345566788999999999999887653 234445566778899999999999999998875
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.78 E-value=8.1 Score=23.67 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred cCCChhHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHhcCcHHHHHH
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPN-IHTYNILIGMFMALNRMDMVRE 211 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 211 (307)
..++.++|+..|....+...-+++ -.++..++++|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444221111 2234445555555555554444
No 350
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.51 E-value=40 Score=29.64 Aligned_cols=185 Identities=14% Similarity=0.015 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791 38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP 117 (307)
Q Consensus 38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (307)
+..+|+.-+.--.. .|+.+.+.-+|++..-. +..=...|--.+.-....|+.+.+..++....+...+-
T Consensus 296 ql~nw~~yLdf~i~----------~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEIT----------LGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred HHHHHHHHhhhhhh----------cccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 45667777776666 67777788888776532 11223345555566666688888888887776665443
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhcCCChhHHH---HHHHHHhhcCCCCccHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-ETYNCFFKEYRGRKDANGAM---KLYRQMKEDDLCVPNIHTY 193 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~ 193 (307)
.+.+.-.-....-..|++..|..+++.+...- |+. ..-..-+....+.|..+.+. .++...... .-+....
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~ 439 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGIL 439 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchh
Confidence 33333333333445679999999999988763 443 22233344456777777776 333333332 2222222
Q ss_pred HHHHHH-----HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791 194 NILIGM-----FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ 239 (307)
Q Consensus 194 ~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 239 (307)
..+.-- +...++.+.|..++..+... .+++...|..++......+
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 222222 23457888999999988876 3556777777777665554
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.50 E-value=34 Score=28.87 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH--H
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVT--YNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT--S 86 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 86 (307)
+...+..|+.+-+..+ .+.|..|+... -.+.+..++. .++. ++.+.+.+.|..|+.. .
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~----------~~~~----~~v~~Ll~~ga~~~~~~~~ 67 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMK----------FRDS----EAIKLLMKHGAIPDVKYPD 67 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHH----------cCCH----HHHHHHHhCCCCccccCCC
Confidence 3344456776554444 45566655432 2233333444 3333 3444555666555432 1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---hHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA---TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE---TYNCF 160 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 160 (307)
....+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+ .
T Consensus 68 ~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~t-p 138 (413)
T PHA02875 68 IESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFS-P 138 (413)
T ss_pred cccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCC-H
Confidence 2234556667788776555543 33221110 1122344445666664 444455556555432 222 3
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHc
Q 021791 161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS---YTMLIHGLCE 237 (307)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~ 237 (307)
+...+..|+.+-+..+++.-.... ..|..-.+. +...+..|+.+-+.. +.+.|..++... ....+...+.
T Consensus 139 Lh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~Tp-L~~A~~~g~~eiv~~----Ll~~ga~~n~~~~~~~~t~l~~A~~ 211 (413)
T PHA02875 139 LHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTP-LIIAMAKGDIAICKM----LLDSGANIDYFGKNGCVAALCYAIE 211 (413)
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCcCCCCCCchHHHHHHH
Confidence 334456677665555554322111 122222233 333445676654444 444555554322 1234443445
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcH
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQK 260 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~ 260 (307)
.|+.+ +.+.+++.|..++.
T Consensus 212 ~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 212 NNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred cCCHH----HHHHHHHCCcCcch
Confidence 56553 44555566766654
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.47 E-value=4.1 Score=18.61 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
.+|..+...+...|+++.|...|....+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778889999999999999999888754
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.44 E-value=15 Score=24.89 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 210 REIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
.+.++.+...++.|++.....-+++|.+-+++..|..+|+-...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555554443
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.35 E-value=20 Score=26.15 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhc-----CCCCcH-HHHHHHHHHHHhhCCCCcch-hhHHHHHHHHHHHHHHHhcC
Q 021791 7 YTSLIYGWCKINRIDMAERFLGEMIER-----GVEPNV-VTYNVLLNGVCRRASLHPNE-RFEKTIRNAEKVFDEMRVRG 79 (307)
Q Consensus 7 ~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~-~~~~~ll~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~ 79 (307)
|...+.-+++..+..++.+++++.+.. .+.|+. .++..+-.++...+.+.+.. .....+++|...|+...+.
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~- 109 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE- 109 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-
Confidence 334444444445545565666555432 246654 57777777777755433322 2245578888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC
Q 021791 80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI 115 (307)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 115 (307)
.|+..+|+.-+.... +|-++..++.+.+.
T Consensus 110 -~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 110 -DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp --TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred -CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 899999999888874 46677777766653
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.22 E-value=26 Score=27.45 Aligned_cols=175 Identities=12% Similarity=0.126 Sum_probs=96.8
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCchhHHHHHHHH
Q 021791 34 GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV---TSFSIVLHVYSRAHKPQLSLDKLNFM 110 (307)
Q Consensus 34 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~ 110 (307)
+-.||+..-|..-.+-.-. ....++|+.-|....+..-.... ....-++....+.|++++.+..|.++
T Consensus 21 ~sEpdVDlENQYYnsK~l~---------e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLK---------EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CCCCCcchHhhhhcccccc---------ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4567766655443322211 45678888888888765212122 23445677888999999998888887
Q ss_pred HHc---C--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791 111 KEK---G--ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR----N-GVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180 (307)
Q Consensus 111 ~~~---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (307)
... . -..+..+.|.++..-..+.+.+-..+.|+.-.+ . +-+.--.|-..+...|...+++.+...+++++
T Consensus 92 LTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 92 LTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 532 1 123455667777665555555444444332221 1 11111122345566677777777777777776
Q ss_pred hhcCCC---Cc-------cHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791 181 KEDDLC---VP-------NIHTYNILIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 181 ~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
.....- .. =...|..=++.|....+-..-..++++..
T Consensus 172 h~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 172 HQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred HHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 543110 11 12355556666666666666666666544
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.11 E-value=51 Score=30.64 Aligned_cols=224 Identities=9% Similarity=-0.007 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHH-HHhcCCchhHHHHHHHHHHc----CCCCchhhHHHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDV-------TSFSIVLHV-YSRAHKPQLSLDKLNFMKEK----GICPTVATYTSVVKCL 129 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~ 129 (307)
..++.+|..++.++...-..|+. ..|+.|-.. ....|+++++.++-+..... -..+....+..+..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 56778888888877554222221 234444332 34578889998888776554 2334556667777888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHh---hHHHHH--HHHhcCCCh--hHHHHHHHHHhhc---C--CCCccHHHHHHHH
Q 021791 130 CSCGRIEDAEELLGEMVRNGVSPSAE---TYNCFF--KEYRGRKDA--NGAMKLYRQMKED---D--LCVPNIHTYNILI 197 (307)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~--~~a~~~~~~~~~~---~--~~~~~~~~~~~l~ 197 (307)
.-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+. .+....+...... . ...+-..+...++
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 88999999999888776542222333 333332 234556633 2222223222221 1 1012234455555
Q ss_pred HHHHhcC-cHHHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHccCcHHHHHHHHHHHHHcCCCC----cHhhHHHHHHH-
Q 021791 198 GMFMALN-RMDMVREIWNHVKGSELGLDLDS--YTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLYRG- 269 (307)
Q Consensus 198 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~- 269 (307)
.++.+.. ...++..-+.--......|-... +..|++.....|+.++|...+.++......+ +..+-...+..
T Consensus 588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~ 667 (894)
T COG2909 588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI 667 (894)
T ss_pred HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH
Confidence 5555521 11222222222222222222222 2367788889999999999999987653333 22222223332
Q ss_pred -HhhchhHHHHHHHHHH
Q 021791 270 -LIQSDMLRTWRRLKKK 285 (307)
Q Consensus 270 -~~~~g~~~~a~~~~~~ 285 (307)
-...|+.+.+.....+
T Consensus 668 lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 668 LWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcccCCHHHHHHHHHh
Confidence 2456788887777666
No 357
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.09 E-value=21 Score=26.31 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=35.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHH----HHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFM----KEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
.|+.++...++.++..+.+..-...-+..+-.+ ...++.++ ......-+..|-..||+.+.-.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 466778888888877776654433333333333 33333322 2222233344555566665555554443
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.04 E-value=20 Score=29.13 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=39.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791 128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD 207 (307)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (307)
.|.+.|.+++|...|..-...... +.+++..-..+|.+...+..|..=.......+ ..-...|+.-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHH
Confidence 355556666666665554443211 44555555555555555554444443333322 112233333333333444444
Q ss_pred HHHHHHHHHhh
Q 021791 208 MVREIWNHVKG 218 (307)
Q Consensus 208 ~a~~~~~~~~~ 218 (307)
+|.+=.+....
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 44444444433
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.44 E-value=7.6 Score=22.53 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=13.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~ 252 (307)
.--.+|.+|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344555555555555555555544
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.90 E-value=8.4 Score=20.94 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=16.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791 131 SCGRIEDAEELLGEMVRNGVSPSAETYNCFF 161 (307)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (307)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555555555554444
No 361
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.66 E-value=52 Score=29.94 Aligned_cols=81 Identities=7% Similarity=0.173 Sum_probs=48.2
Q ss_pred HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhH
Q 021791 197 IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 276 (307)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 276 (307)
+.-+...|+..+|.++-.+.+ -||...|..=+.+++..++|++..++-+... ++.-|.-...+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 333444555555555554444 3466666666777777777766555544332 134466667777777777
Q ss_pred HHHHHHHHHhh
Q 021791 277 RTWRRLKKKLD 287 (307)
Q Consensus 277 ~~a~~~~~~~~ 287 (307)
++|..++-+..
T Consensus 761 ~EA~KYiprv~ 771 (829)
T KOG2280|consen 761 DEAKKYIPRVG 771 (829)
T ss_pred HHHhhhhhccC
Confidence 77777766553
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.36 E-value=26 Score=26.22 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791 127 KCLCSCGRIEDAEELLGEMVRNGVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (307)
+-+.+.|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.-.....+.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 346778888888888888877633222 2234444456777888888887777777665 3344444455667888
Q ss_pred cCcHHHHHHHHHHHhhC
Q 021791 203 LNRMDMVREIWNHVKGS 219 (307)
Q Consensus 203 ~~~~~~a~~~~~~~~~~ 219 (307)
...++.|++=++.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888876
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.15 E-value=24 Score=31.09 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 67 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
-+-.++..|... ..|--...|...-.+.-.|+...|.+.+.........-.......|.+...+.|...+|-.++.+..
T Consensus 591 ~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 344445444432 3333333343333334478888888888776554333334455567777777888888888887776
Q ss_pred hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791 147 RNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM 199 (307)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (307)
... ...+-++..+.+++....+.++|++-|++..+.. +.+...-+.|...
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLI 719 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 654 2355677778888888889999999998888775 4455555555443
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.87 E-value=15 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791 187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS 219 (307)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (307)
.|+..+|..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777666654
No 365
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.81 E-value=6.8 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=16.6
Q ss_pred cHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 259 QKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
|-.-...++.++...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444555666666666666666666553
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.75 E-value=36 Score=27.10 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhh
Q 021791 191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVT 262 (307)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~ 262 (307)
.++......|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.|.+-++++.+. |+..+...
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 345666778888999999999998888774 457778888889999999877777777766432 66555443
No 367
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.47 E-value=4.3 Score=27.77 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=26.5
Q ss_pred HhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 021791 15 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV 49 (307)
Q Consensus 15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 49 (307)
...|.-..|..+|..|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4457778899999999999998875 77777654
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.43 E-value=24 Score=24.78 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=65.6
Q ss_pred HHhcCCCCCHH--HHHHHHHHHHhcCCchhHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 021791 75 MRVRGIEPDVT--SFSIVLHVYSRAHKPQLSLDKLNFMKEKG-----ICPTVATYTSVVKCLCSCGR-IEDAEELLGEMV 146 (307)
Q Consensus 75 ~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 146 (307)
|.+.+..++.. ..|.++.-....+++....++++.+.... -..+...|.+++.+.....- .--+..+|..++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44445555543 46778888788888888888888774321 02355678888888766555 445677778887
Q ss_pred hCCCCCCHhhHHHHHHHHhcCCChh
Q 021791 147 RNGVSPSAETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (307)
+.+.++++.-|..++.++.+....+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 7777888888888888776654433
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.89 E-value=38 Score=26.90 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-------HHHHHHhcCCChhHHHHHH----HHHhhcCCCCccHHHH
Q 021791 125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN-------CFFKEYRGRKDANGAMKLY----RQMKEDDLCVPNIHTY 193 (307)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~ 193 (307)
+.+-..+.+++++|...+.++...|...+..+.+ .+...|...|+....-++. +.|..-.. +......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHH
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhCCCCCCHHhHHH-----HHHHHHccCcHHHHHHHHHHHHHc
Q 021791 194 NILIGMFMALNR-MDMVREIWNHVKGSELGLDLDSYTM-----LIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 194 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
.+|+..+-...+ ++..+++.....+...+-....... ++..+.+.|++.+|+.+...+...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.82 E-value=42 Score=27.34 Aligned_cols=153 Identities=9% Similarity=0.037 Sum_probs=99.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCCc--chhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791 36 EPNVVTYNVLLNGVCRRASLHP--NERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK 113 (307)
Q Consensus 36 ~p~~~~~~~ll~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (307)
+-|+.+|-.++..--..-.... ........+.-+.++++..+.+ +-+...+..+|..+.+..+.+...+.++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467788777764443222111 1112445677888999988874 457778889999999999999999999999887
Q ss_pred CCCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHhC------CC----CCCH-------hhHHHHHHHHhcCCChhHH
Q 021791 114 GICPTVATYTSVVKCLCS---CGRIEDAEELLGEMVRN------GV----SPSA-------ETYNCFFKEYRGRKDANGA 173 (307)
Q Consensus 114 ~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a 173 (307)
... +...|...|..... .-.++....+|.+.... +. .+.. ..+..+.......|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 433 67777777766544 22466666666655432 11 0111 1233334445678999999
Q ss_pred HHHHHHHhhcCCCCccH
Q 021791 174 MKLYRQMKEDDLCVPNI 190 (307)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (307)
..+++.+.+.+.+.|..
T Consensus 174 va~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 174 VALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 99999988877655654
No 371
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.56 E-value=31 Score=25.34 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhhcCCCCccH--HH-----HHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 170 ANGAMKLYRQMKEDDLCVPNI--HT-----YNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
.+.|+.+|+.+.+... .|.. .. -...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3567777777766542 2210 11 12233445666666666666666554
No 372
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=73 Score=29.22 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=67.3
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhhCCCCcchhh--------HHHHHHHHHHHHHHHhc-
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEP---NVVTYNVLLNGVCRRASLHPNERF--------EKTIRNAEKVFDEMRVR- 78 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~- 78 (307)
|.-+.+.+.+++|+++-+.... ..| -.......|..+...|+++.+... ...++.....|.+....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3445667778888877655433 233 344566677777664444433222 12222333333222211
Q ss_pred --------C-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc---------CCCC-------chhhHHHHHHHHHhcC
Q 021791 79 --------G-IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK---------GICP-------TVATYTSVVKCLCSCG 133 (307)
Q Consensus 79 --------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~-------~~~~~~~ll~~~~~~~ 133 (307)
| ...+...|..++..+.. .+...-.++....... ..+| +...-..|+..|...+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 1 11245567777777766 3333333333222110 0011 1222344777788888
Q ss_pred ChHHHHHHHHHHHh
Q 021791 134 RIEDAEELLGEMVR 147 (307)
Q Consensus 134 ~~~~a~~~~~~~~~ 147 (307)
+++.|..++-..++
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 88888888877654
No 373
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=73.77 E-value=45 Score=26.77 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCChhHHHHHHH-HHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791 167 RKDANGAMKLYR-QMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC 245 (307)
Q Consensus 167 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 245 (307)
...+++...... +|.+.+ -|+..+...+-+.......|.+-.++...-.-+ ...+|..++.+++..|+.+-.+
T Consensus 268 e~p~~evi~~VKee~k~~n--lPe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNN--LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCHHHHHHHHHHHHHhcC--CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
Confidence 334455444444 444444 455543333333333334443333322211111 3447888888999888876544
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=84 Score=29.62 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791 5 KMYTSLIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
.-|..|+..|...|++++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35788999999999999999999999774
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.78 E-value=48 Score=26.64 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=13.9
Q ss_pred hhHHHHHHHHhhchhHHHH
Q 021791 261 VTFETLYRGLIQSDMLRTW 279 (307)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a 279 (307)
.+|.-|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577788888888876644
No 376
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.42 E-value=3.4 Score=28.20 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=21.4
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 270 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 270 (307)
.|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 44556678888888888887764 66666543
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.31 E-value=31 Score=24.23 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=14.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791 125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAET 156 (307)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (307)
++..+...++.-.|.++++++.+.++..+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34444444444445555555554444433333
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.20 E-value=21 Score=22.38 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHH
Q 021791 209 VREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 280 (307)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 280 (307)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +| | ..|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 44556666666533 44444444333335567777777777766 42 2 34666666666666554443
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.63 E-value=10 Score=30.04 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCHHh-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHH
Q 021791 223 LDLDS-YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 265 (307)
Q Consensus 223 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 265 (307)
|+..+ |+..|....+.||+++|+.++++....|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34443 56778888888888888888888887777655555543
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.23 E-value=31 Score=23.87 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791 36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE-PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK 113 (307)
Q Consensus 36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (307)
.++..+--.+-.++.+..+ ..++.+.+.+++++.+...+ -......-|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~-------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRD-------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccc-------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444444445554433 56667777777777652211 12223334444666777777777777766665
No 381
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.98 E-value=51 Score=29.66 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=51.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCC-CCccHHHHHHHHHHHHhcCcHH------HHHHHHHHHhhCCCCCCHHhHHHH
Q 021791 159 CFFKEYRGRKDANGAMKLYRQMKEDDL-CVPNIHTYNILIGMFMALNRMD------MVREIWNHVKGSELGLDLDSYTML 231 (307)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 231 (307)
++..+|...|++..+.++++.+...+. -+.=...+|..++...+.|.++ .+.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 677888888888888888888766531 0122345666677777777643 3333444333 33466677777
Q ss_pred HHHHHccCcHHHHHHHHHHHH
Q 021791 232 IHGLCEKQKWKEACQYFVEMI 252 (307)
Q Consensus 232 i~~~~~~g~~~~a~~~~~~~~ 252 (307)
+++-..--+-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 666544322233333344443
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.54 E-value=17 Score=32.25 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791 118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI 197 (307)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 197 (307)
+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+.+.++...+..+.+.+.+... ..+......++
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~-~~~~~~~~~ll 480 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYC-NNGEPLDDDLL 480 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHh-cCCCcccHHHH
Confidence 444556666667777777777776665544321 223344455555566665555555444443221 11111111122
Q ss_pred HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791 198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 269 (307)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 269 (307)
+...... +....+. -...|..+-+. .+.|++.+|.+.+-.+...++.|...-...|.++
T Consensus 481 ~~i~~~~-----------~~~~~L~-fla~yreF~~~-~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 481 DNIGSPM-----------LLSQRLS-FLAKYREFYEL-YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHhcchh-----------hhhhhhH-HHHHHHHHHHH-HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 1111111 0000000 01112222221 3447888888888888877777776655555544
No 383
>PRK12798 chemotaxis protein; Reviewed
Probab=69.47 E-value=68 Score=27.05 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=106.5
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHhcCCChh
Q 021791 97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLC-SCGRIEDAEELLGEMVRNGVSPSA----ETYNCFFKEYRGRKDAN 171 (307)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 171 (307)
.|+..++.+.+..+.....++....+-.|+.+-. ...++.+|+..|++..-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6778888888888877766777777777766544 445788888888887643 2332 23333344557778888
Q ss_pred HHHHHHHHHhhcCCCCccH-HHHHHHHHHHHhcCcH---HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVPNI-HTYNILIGMFMALNRM---DMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY 247 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 247 (307)
++..+-.+....-...|=. ..+..+..+..+.++- +.-..++..|.. .--...|..+.+.-...|+.+-|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 7666655554432112221 2223333344444432 222233333221 11345788888888888988888888
Q ss_pred HHHHHHcCCCCcHh-hHHHHHHH--HhhchhHHHHHHHHHHhhhcCCC
Q 021791 248 FVEMIEKGLLPQKV-TFETLYRG--LIQSDMLRTWRRLKKKLDEESIT 292 (307)
Q Consensus 248 ~~~~~~~~~~p~~~-~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~ 292 (307)
-++.+...-..+.. .-..+..+ -.-..+++.+.+.++.+.....+
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 77776553111111 11122222 23345566777666666555443
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.67 E-value=11 Score=29.85 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCHHH-HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhH
Q 021791 82 PDVTS-FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY 122 (307)
Q Consensus 82 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (307)
||... |+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44443 457777777777777777777777777765333333
No 385
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.48 E-value=53 Score=25.38 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=48.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC-----------CCccHHHHHHHHH
Q 021791 130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL-----------CVPNIHTYNILIG 198 (307)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~l~~ 198 (307)
.+..+-+--.++.+-....+++-+......++ +...|+..+|+..+........ -.|.+.....+++
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33333333344444444445544444444443 4566777777766655432211 1355555555665
Q ss_pred HHHhcCcHHHHHHHHHHHhhCCCCCC
Q 021791 199 MFMALNRMDMVREIWNHVKGSELGLD 224 (307)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (307)
.|. .+++++|.+++.++-+.|+.|.
T Consensus 248 ~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 248 ACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 543 3456777777777777666643
No 386
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.62 E-value=23 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 51 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 51 (307)
|+...++.++..+++-.-.+.++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999875 477788777777777
No 387
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=66.93 E-value=24 Score=20.78 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 021791 35 VEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 97 (307)
Q Consensus 35 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 97 (307)
+.|....++.++..+++ ...+++++..+.+..+.|. .+..+|.--++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Ae----------d~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAE----------DHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34677788888888888 8888999999999988874 4666776666666553
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.77 E-value=76 Score=25.84 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=10.2
Q ss_pred CchhHHHHHHHHHHcCCC
Q 021791 99 KPQLSLDKLNFMKEKGIC 116 (307)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~ 116 (307)
+.+....++..++..+..
T Consensus 37 ~~~~~e~l~~~Ird~~Ma 54 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMA 54 (393)
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 445555566666666543
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.26 E-value=35 Score=30.42 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHhhcCCCCccHH
Q 021791 168 KDANGAMKLYRQMKEDDLCVPNIH 191 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~ 191 (307)
+++.+|.+.+-.+..... .|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~-~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPI-APKSF 531 (566)
T ss_dssp ------------------------
T ss_pred hhHHHHHHHHHHHHCCCC-CcHHH
Confidence 555555555555555443 44433
No 390
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=63.53 E-value=1.3e+02 Score=27.97 Aligned_cols=97 Identities=8% Similarity=0.078 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----hCCCCcchhhHHHHHHHHHHHHHHHh
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPNERFEKTIRNAEKVFDEMRV 77 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~ 77 (307)
+.......++.++...|+++.|.+++..-... .-+.......++.+... +.+.. .-.|.+..|.+.++-+..
T Consensus 430 ~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~-~l~~~~~~~lvl~~~~e~fd~Asn~n---~~~g~lk~A~~~L~l~~~ 505 (715)
T PF08314_consen 430 SKDEIEEIFLEALLSSGRFSLAKSLYEESSSS-PLSSEKVEDLVLKAAWEFFDNASNGN---RTRGGLKKARECLNLFPP 505 (715)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS-----TTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHHHHhcCCCCC---CCChHHHHHHHHHHhccC
Confidence 44567788999999999999999999875332 12334444444444333 11111 116777777777776654
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCchh
Q 021791 78 R-GIEPDVTSFSIVLHVYSRAHKPQL 102 (307)
Q Consensus 78 ~-~~~~~~~~~~~ll~~~~~~~~~~~ 102 (307)
. .-.+...-...|+.+.....++.-
T Consensus 506 ~~~~~~~~~~~~~Li~a~~~Ls~f~l 531 (715)
T PF08314_consen 506 TFPNSPRIQREKDLIKATHALSEFSL 531 (715)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTS--
T ss_pred cCCccHHHHHHHHHHHHHHHHHhCCe
Confidence 3 002244455667777666555543
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.44 E-value=1.3e+02 Score=28.18 Aligned_cols=227 Identities=10% Similarity=0.028 Sum_probs=120.0
Q ss_pred HHhcCchhhHHHHHHHHHhcCCCCcHH-------HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----CCCC
Q 021791 14 WCKINRIDMAERFLGEMIERGVEPNVV-------TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----GIEP 82 (307)
Q Consensus 14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 82 (307)
.....++.+|..++.+....-..|+.. .++.|-...... .++++.+.++-+..... -..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~---------~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN---------RGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhcccccchh
Confidence 345678999999999886652222211 344433332222 56677777777666543 2345
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHH-----HHHHhcCChH--HHHHHHHHHHhCC--CC--
Q 021791 83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVV-----KCLCSCGRIE--DAEELLGEMVRNG--VS-- 151 (307)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~~--~~-- 151 (307)
....+..+..+..-.|+.++|..+.....+..-..+...+.... ..+...|+.. +.+..|....... -.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 56677788888888999999999887776553223333332222 2344566332 2233333332210 01
Q ss_pred --CCHhhHHHHHHHHhcCCC-hhHHHHHHHHHhhcCCCCccHHH--HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC---
Q 021791 152 --PSAETYNCFFKEYRGRKD-ANGAMKLYRQMKEDDLCVPNIHT--YNILIGMFMALNRMDMVREIWNHVKGSELGL--- 223 (307)
Q Consensus 152 --~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 223 (307)
+-..++..+..++.+..- ..++..-+.-...... .|-... +..|+......|+.++|...++++......+
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTP-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhccc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 122344455555554211 1222222222222211 121122 2367778888999999999988877543332
Q ss_pred -CHHhHHHHHHH--HHccCcHHHHHHHHHH
Q 021791 224 -DLDSYTMLIHG--LCEKQKWKEACQYFVE 250 (307)
Q Consensus 224 -~~~~~~~li~~--~~~~g~~~~a~~~~~~ 250 (307)
+..+-...+.. -...|+..++.....+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222223322 2456787777777665
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.01 E-value=1.2e+02 Score=27.64 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHhhcCCCCccH--HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791 167 RKDANGAMKLYRQMKEDDLCVPNI--HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 244 (307)
..+.+.|..++..........+.. .+...+.......+..+++...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445577788887764443212221 222333333333322455555555543322 2444445555555578888888
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 245 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
...+..|-.. ..-...-.--+.+++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877443 222333444566777778888888888887743
No 393
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.92 E-value=50 Score=23.17 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 021791 70 KVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGR 134 (307)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 134 (307)
++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566777765543 345777888888889999999999998877766666556666666553
No 394
>PRK09857 putative transposase; Provisional
Probab=62.14 E-value=81 Score=25.31 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791 193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
+..++....+.++.++..++++.+.+. .+......-.+.+-+...|.-+++.++..+|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444455555555555554443 122222333444445555555555666666666555433
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.70 E-value=73 Score=24.76 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHH
Q 021791 3 NVKMYTSLIYGWCKINRIDMAERFLGE 29 (307)
Q Consensus 3 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 29 (307)
|+..|. ++.+|...|+...|.+-|..
T Consensus 10 d~i~~k-i~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 10 DFIAFK-ICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HhHHHH-HHHHHHhCCCHHHHHHHHHH
Confidence 344444 34777777887777766653
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.20 E-value=39 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=7.6
Q ss_pred cCCChhHHHHHHHHHh
Q 021791 166 GRKDANGAMKLYRQMK 181 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~ 181 (307)
..|+.+.|..++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344445555554444
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.15 E-value=76 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791 124 SVVKCLCSCGRIEDAEELLGEMVRN----G-VSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180 (307)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (307)
.+...|.+.|++++|..+|+.+... | ..+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566666666666666655321 2 1223444555556666666666655554443
No 398
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=61.12 E-value=66 Score=23.91 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=10.9
Q ss_pred hcCChHHHHHHHHHHHh
Q 021791 131 SCGRIEDAEELLGEMVR 147 (307)
Q Consensus 131 ~~~~~~~a~~~~~~~~~ 147 (307)
+.|+++.|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55667777666666654
No 399
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.45 E-value=74 Score=28.28 Aligned_cols=88 Identities=14% Similarity=-0.021 Sum_probs=52.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHH
Q 021791 131 SCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVR 210 (307)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 210 (307)
..|+...|...+.......+.-.-+..-.|.+...+.+....|..++.+..... ...+-++..+.+++....+++.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHH
Confidence 356666776666655443222222333444455555566666666666665544 334456667777777777777777
Q ss_pred HHHHHHhhCC
Q 021791 211 EIWNHVKGSE 220 (307)
Q Consensus 211 ~~~~~~~~~~ 220 (307)
+.|+...+..
T Consensus 697 ~~~~~a~~~~ 706 (886)
T KOG4507|consen 697 EAFRQALKLT 706 (886)
T ss_pred HHHHHHHhcC
Confidence 7777766653
No 400
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.22 E-value=63 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHhCCCCCCH
Q 021791 135 IEDAEELLGEMVRNGVSPSA 154 (307)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~ 154 (307)
.-.|.++++.+.+.+..++.
T Consensus 41 hlSa~eI~~~L~~~~~~is~ 60 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKP 60 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCc
Confidence 33344444444443333333
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.21 E-value=2.4e+02 Score=30.09 Aligned_cols=142 Identities=10% Similarity=0.102 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHH
Q 021791 62 EKTIRNAEKVFDEM----RVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED 137 (307)
Q Consensus 62 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 137 (307)
.+.+.+|...++.- .+. ......+-.+...|+..+++++...+...-.. +...+ .-|......|++..
T Consensus 1396 c~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEASGNWAD 1467 (2382)
T ss_pred hHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHhhccHHH
Confidence 78889999988883 222 11233455555599999999998888765221 22233 34445677899999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH-HHHHHHhcCcHHHHHHHHH
Q 021791 138 AEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI-LIGMFMALNRMDMVREIWN 214 (307)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~ 214 (307)
|...|+.+.+.+.. ...+++.++......+.++.+....+-..... .+....++. =+.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999987532 46778888888888888888877666665543 333333333 3444467788887777665
No 402
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.04 E-value=85 Score=25.34 Aligned_cols=56 Identities=16% Similarity=0.428 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791 175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (307)
++++.+.+.++ .|.-.++..+.-.+.+.=.+..++.+|+.+.. |..-|..++..|+
T Consensus 264 EL~~~L~~~~i-~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEI-HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCC-CccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45555555554 66666666666666666667777777777664 2223555555554
No 403
>PRK09462 fur ferric uptake regulator; Provisional
Probab=60.03 E-value=57 Score=22.89 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791 134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK 168 (307)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (307)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555444444444333344444433
No 404
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.90 E-value=52 Score=23.82 Aligned_cols=47 Identities=6% Similarity=-0.051 Sum_probs=26.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791 195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241 (307)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 241 (307)
.++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444444455556666666666666555555544455555555543
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.76 E-value=1.1e+02 Score=25.82 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=39.9
Q ss_pred HHHHhcCchhhHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 12 YGWCKINRIDMAERFLGEMIERGVEPNVV--TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
..+.+.+++..|.++|+++... ++++.. .+..+..+|.. |+ .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~---WD-----~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDA---WD-----RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHH---HH-----ccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 555554 45555555544 11 34567888888877654
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.58 E-value=46 Score=21.68 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=21.1
Q ss_pred HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 200 FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
+...|++++|..+.+.. ..||...|..+-. .+.|..+++..-+.+|-..
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34445555555444433 2344444444432 2344444444444444443
No 407
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=1.6e+02 Score=27.87 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHhhHH---
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCSCGRI--EDAEELLGEMVRNGVSPSAETYN--- 158 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 158 (307)
|..|+..|...|+.++|+++|.+..... -..-...+..++.-+.+.+.. +-+++.-+...+.+..-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6777888888888888888888876631 111112233355544454444 44444444444332211111111
Q ss_pred ---------HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc--------HHHHHHH-----HHHH
Q 021791 159 ---------CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR--------MDMVREI-----WNHV 216 (307)
Q Consensus 159 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 216 (307)
.-+-.|......+-+..+++.+..... .++....+.++..|+..=+ -+++.+. +..+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~-~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR-LTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc-ccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 123345666777888888888887765 5677777777777764321 1222222 1112
Q ss_pred hh--CCCCCC--------HHhHHHHHHHHHccCcHHHHHHHHHHHHHc-------------CCCCcHhhHHHHHHHHhhc
Q 021791 217 KG--SELGLD--------LDSYTMLIHGLCEKQKWKEACQYFVEMIEK-------------GLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 217 ~~--~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 273 (307)
.. ....|. ..-|....-.+.+.|+.++|+.++-..++. ...++...|..+++.+...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 112221 222333333344788888888887766542 1233556677777766654
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.85 E-value=1.1e+02 Score=25.80 Aligned_cols=175 Identities=9% Similarity=0.059 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCC
Q 021791 85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---------GVSPS 153 (307)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 153 (307)
..+.-+...|..+|+++.|++.|.+....-. .-....|-.+|..-.-.|+|........+.... .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4678888999999999999999998665421 113344555666666778887776666665543 12333
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHhhc-----CCCCccHHHHHHHHHHHHhcCcHHHHHHH-----HHHHhhCCCCC
Q 021791 154 AETYNCFFKEYRGRKDANGAMKLYRQMKED-----DLCVPNIHTYNILIGMFMALNRMDMVREI-----WNHVKGSELGL 223 (307)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 223 (307)
...+..+...+.+ ++..|...|-..... +.+.|...+....+.+.+..++-+--+.+ |+.+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 4455555544433 555555555433222 11234444444445555555544433333 2223322
Q ss_pred CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhhHHHHH
Q 021791 224 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTFETLY 267 (307)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~ 267 (307)
.+..+..+..-| .+++...+++++++... -+.|...+.-.+|
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 333444444333 34778888888877554 3455555554444
No 409
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.62 E-value=19 Score=29.28 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=47.7
Q ss_pred cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHccCcHHHH
Q 021791 166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD-SYTMLIHGLCEKQKWKEA 244 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 244 (307)
..|.++.|++.|....+.+ ++....|..-.+++.+.+++..|++=++.....+ ||.. -|-.=-.+-...|+|.+|
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 4455666666666666554 4555555555566666666666666555555432 2221 122222223345666666
Q ss_pred HHHHHHHHHcCCCC
Q 021791 245 CQYFVEMIEKGLLP 258 (307)
Q Consensus 245 ~~~~~~~~~~~~~p 258 (307)
...+....+.++.+
T Consensus 202 a~dl~~a~kld~dE 215 (377)
T KOG1308|consen 202 AHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHhccccH
Confidence 66666666655433
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.44 E-value=59 Score=22.16 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=6.2
Q ss_pred HHHHHccCcHHHHHHHH
Q 021791 232 IHGLCEKQKWKEACQYF 248 (307)
Q Consensus 232 i~~~~~~g~~~~a~~~~ 248 (307)
...+...|++++|.++|
T Consensus 106 A~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 106 AEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33333334444443333
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.10 E-value=48 Score=21.04 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=6.0
Q ss_pred cCCChhHHHHHHHHH
Q 021791 166 GRKDANGAMKLYRQM 180 (307)
Q Consensus 166 ~~~~~~~a~~~~~~~ 180 (307)
..|++++|...+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444333
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.75 E-value=33 Score=19.14 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.1
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 021791 10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG 48 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 48 (307)
+.-++.+.|++++|.+..+.+++. .|+..-...|-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Confidence 566788999999999999999986 7887766665544
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.30 E-value=56 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791 227 SYTMLIHGLCEKQKWKEACQYFVEMIE 253 (307)
Q Consensus 227 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 253 (307)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888876
No 414
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.95 E-value=50 Score=21.82 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=36.4
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL 55 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 55 (307)
.++..+...+..-.|.++++.+.+.+..++..|.-..|..+...|-.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 45667777778889999999999887777877777777777776544
No 415
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.41 E-value=47 Score=22.19 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCC
Q 021791 8 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS 54 (307)
Q Consensus 8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 54 (307)
..++..+...+.+-.|.++++.+.+.+...+..|.-.-|..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 45778888888899999999999988877787766666667776554
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.36 E-value=90 Score=23.06 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=10.6
Q ss_pred HHhcCCChhHHHHHHHHHhh
Q 021791 163 EYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~ 182 (307)
.|.+.|.+++|.++++....
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.64 E-value=1.2e+02 Score=24.33 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=63.2
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCccHHHHH-HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH--
Q 021791 153 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVPNIHTYN-ILIGMFMALNRMDMVREIWNHVKGSELGLDLD-- 226 (307)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 226 (307)
....+..+...|++.++.+.+.+..++...... .+.|..... .|.-.|....-.++-++..+.+.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345666777778888888887777776654421 122322111 12222333334566677777777777655433
Q ss_pred --hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhch
Q 021791 227 --SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 274 (307)
Q Consensus 227 --~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 274 (307)
+|..+-. ....++.+|-.++.+.+..=-......|....+-..-+|
T Consensus 194 yK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 194 YKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 3333322 233466777777666654311122234555555544444
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.19 E-value=57 Score=27.91 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.4
Q ss_pred HhcCChHHHHHHHHHHHh
Q 021791 130 CSCGRIEDAEELLGEMVR 147 (307)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~ 147 (307)
.+.+.++.|..++.+.++
T Consensus 15 l~~~~fd~avdlysKaI~ 32 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE 32 (476)
T ss_pred cccchHHHHHHHHHHHHh
Confidence 334444444444444444
No 419
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.71 E-value=67 Score=21.20 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=16.7
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 021791 97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG 133 (307)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 133 (307)
.+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3334445555555554444444444444444444444
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.43 E-value=1.1e+02 Score=23.71 Aligned_cols=84 Identities=13% Similarity=0.016 Sum_probs=47.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH-HHHHHHHHHHhcCc
Q 021791 128 CLCSCGRIEDAEELLGEMVRNGVSPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH-TYNILIGMFMALNR 205 (307)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 205 (307)
.|.....++.|...|.+.+.. .|+. .-|..=+..+.+..+++.+..--+...+. .||.. .-..+.........
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---ChHHHHHHHHHHHHHHhhcc
Confidence 355556677777766666554 3444 33444455566667776666555555544 34433 23334445555666
Q ss_pred HHHHHHHHHHH
Q 021791 206 MDMVREIWNHV 216 (307)
Q Consensus 206 ~~~a~~~~~~~ 216 (307)
+++|+..+.+.
T Consensus 94 ~~eaI~~Lqra 104 (284)
T KOG4642|consen 94 YDEAIKVLQRA 104 (284)
T ss_pred ccHHHHHHHHH
Confidence 77777776665
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.18 E-value=61 Score=20.54 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=12.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHh
Q 021791 196 LIGMFMALNRMDMVREIWNHVK 217 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~ 217 (307)
+.......|+.++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455566666666665544
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.87 E-value=69 Score=27.48 Aligned_cols=107 Identities=9% Similarity=-0.053 Sum_probs=70.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEKGICPT-VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (307)
+..+...++++.|..++.+.++. .|+ +..|..-..++.+.+++..|+.=+...++..+. ....|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 44556778899999999999887 444 444444557888999999998777777765422 22233333344555566
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL 203 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (307)
+.+|+..|+..... .|+..-+...+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~l---~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL---APNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhc---CcCcHHHHHHHHHHHHH
Confidence 77777777777665 67777666666655443
No 423
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.14 E-value=1.4e+02 Score=25.42 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 87 FSIVLHVYSRAHKPQLSLDKLNFMKEK--GICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
...|++...-.||.+...+.++.+.+. |..|...+--.+.-+|.-.+++.+|.++|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788877777777776554 333332222345666777788888888887664
No 424
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.09 E-value=1.4e+02 Score=24.25 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791 139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA 202 (307)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (307)
.++|+.+...++.|.-..+..+.-.+.+.=.+..++.+|+.+.... .-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~------~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP------QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh------hhhHHHHHHHHH
Confidence 5778888888999998888888888888889999999999997653 236667766653
No 425
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.88 E-value=63 Score=20.30 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791 140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 182 (307)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (307)
++|+-....|+..|...|..++....-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555555555666666555555555555555555555543
No 426
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.75 E-value=2.2e+02 Score=26.47 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEP---DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA 138 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 138 (307)
.+.+++|+++-+... |..| -...+...+..+.-.|+++.|-...-.|... +..-|...+..+...++....
T Consensus 369 ~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 369 KKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 677888887766544 3344 3456777888888888888888887777654 555566666666655554433
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH------------------HhhcCCCCccHHHHHHHHHHH
Q 021791 139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQ------------------MKEDDLCVPNIHTYNILIGMF 200 (307)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~ 200 (307)
..+ +.....+.+...|..++..+.. .+...-.++..+ +.+. .-+...-..|+..|
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~---Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN---SESTALLEVLAHLY 515 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh---ccchhHHHHHHHHH
Confidence 222 2222223445566666655554 222111111111 1111 11223334577778
Q ss_pred HhcCcHHHHHHHHHHHhh
Q 021791 201 MALNRMDMVREIWNHVKG 218 (307)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~ 218 (307)
...+++..|..++-..++
T Consensus 516 l~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHccChHHHHHHHHhccC
Confidence 888888888887766653
No 427
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.45 E-value=64 Score=21.55 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 021791 90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG 133 (307)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 133 (307)
++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33344444444455555555555554444444333444444333
No 428
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.15 E-value=1.2e+02 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=17.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791 195 ILIGMFMALNRMDMVREIWNHVKGSELG 222 (307)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (307)
-+...-+..+++.+|+++|+++-...+.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445667788888888777665444
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.96 E-value=1.4e+02 Score=24.06 Aligned_cols=191 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHH---------HHhCCCCCC--
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCG-----RIEDAEELLGE---------MVRNGVSPS-- 153 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~---------~~~~~~~~~-- 153 (307)
+.++++.|..+ ...+++-+... .-+++...|..++..+.... ..+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HhhHHHHHHHH-hcCCC-----hhHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC
Q 021791 154 AETYNCFFKEY-RGRKD-----ANGAMKLYRQMKEDDLC---VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD 224 (307)
Q Consensus 154 ~~~~~~l~~~~-~~~~~-----~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (307)
.......++.. ....- .+.|.+.|+.....+.. ..+...-..++....+.|+.+.-..+++...... +
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---S 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---C
Q ss_pred HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhchhHHHHHHHHHH
Q 021791 225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKK 285 (307)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~ 285 (307)
...-..++.+++...+.+...++++.....+..++......+.... ....-.+.+.+++..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.86 E-value=1.5e+02 Score=24.29 Aligned_cols=118 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHH----cCCCCchhhHHHHHH-HHHhcCChHH
Q 021791 64 TIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE----KGICPTVATYTSVVK-CLCSCGRIED 137 (307)
Q Consensus 64 ~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~-~~~~~~~~~~ 137 (307)
.+++-.+..++..+. |-.--...+......|++.||.+.|++.+....+ .|.+.|...+.+-+. .|....-+.+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 344444444444332 3222344566777889999999999998876644 366666655544333 2333334445
Q ss_pred HHHHHHHHHhCCCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 138 AEELLGEMVRNGVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 138 a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
-.+..+.+.+.|...+ ..+|..+- |....++.+|-.+|-.....
T Consensus 163 ~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 163 SIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 5555556666654333 23444432 34456788888888776543
No 431
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=48.62 E-value=90 Score=21.71 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHhcC
Q 021791 26 FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE-------PDVTSFSIVLHVYSRAH 98 (307)
Q Consensus 26 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~ll~~~~~~~ 98 (307)
+|.++++.-.+|+..++...|....- ...++-+-++.+.-. .|-. -+...+.+++-++....
T Consensus 5 ~f~~lr~~a~~~~~e~f~~ai~e~lV----------~EmYE~igKlRN~~~-~G~~~~lp~~A~~~A~~~AmliGL~Nr~ 73 (143)
T PF07827_consen 5 FFEKLREAAESPESEEFRQAIREFLV----------GEMYEFIGKLRNARQ-SGPHTYLPYLAMQLAWYGAMLIGLHNRT 73 (143)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH----------HTHHHHHHHHHHHHH-H--GGGHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH----------HHHHHHHHHHhcccc-cCchhhhHHHHHHHHHHHHHHHHHhccc
Confidence 45555555556788888888876665 445555555544432 3322 13455777888888777
Q ss_pred CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 99 KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
.+...-.++.+..+..-.|+ -|..++. ....|+..++..+++...
T Consensus 74 ~ytT~a~~l~Eal~Lp~rP~--Gyd~l~~-lvm~G~L~d~~~i~~~cE 118 (143)
T PF07827_consen 74 LYTTSARVLPEALSLPSRPS--GYDELAQ-LVMSGQLTDPEKIYESCE 118 (143)
T ss_dssp --SSCCCHHHHHTTSSS--T--THHHHHH-HHHHTB---HHHHHHHHH
T ss_pred eeeccccccHHHhcCCCCCc--cHHHHHH-HHhccccCCHHHHHHHHH
Confidence 77777777888777644444 4555554 466788888877776654
No 432
>PRK10941 hypothetical protein; Provisional
Probab=48.13 E-value=1.4e+02 Score=23.71 Aligned_cols=77 Identities=8% Similarity=-0.072 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHH
Q 021791 158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLC 236 (307)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 236 (307)
+.+-.+|.+.++++.|+++.+.+..-. +.++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 446667888888888888888888775 556666666666788888888888877776543 23445555555555443
No 433
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.82 E-value=38 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCC
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGV 35 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 35 (307)
++++.+.+|.--++|+++++-|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999873
No 434
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.53 E-value=2.1e+02 Score=25.64 Aligned_cols=199 Identities=10% Similarity=0.079 Sum_probs=101.1
Q ss_pred CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791 37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC 116 (307)
Q Consensus 37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (307)
+....+..|++.+... ..++-.++++++... + ...+..++++....|......-+.+.+....+.
T Consensus 308 ~~~~~f~~lv~~lR~~-----------~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-----------SEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred chHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4566777777766553 345566666666531 1 678899999999999876665555555554443
Q ss_pred CchhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhcCCCh------hHHHHHHHHHh
Q 021791 117 PTVATYTSVVKCLCS--CGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRGRKDA------NGAMKLYRQMK 181 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~~~ 181 (307)
+...-..+...... .-..+-...+++-+......+.. -++..++.-+|..... ++....+.+..
T Consensus 373 -~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 373 -PLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred -HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 33333334443333 33333344444433333344443 3445555544444432 33444443332
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc--CcHHHHHHHHHHHH
Q 021791 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK--QKWKEACQYFVEMI 252 (307)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 252 (307)
......-|..--...+.+++..|.......+...+. .....+...-...+.++.+. ...+.+..++-..-
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 221102233334566778888887555444333333 22233444444555555432 34555555554443
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.90 E-value=2.1e+02 Score=25.08 Aligned_cols=109 Identities=14% Similarity=-0.016 Sum_probs=71.4
Q ss_pred HHhcCCChhHHHHHHHHHhhcCC----CCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-------CCCCCCH---
Q 021791 163 EYRGRKDANGAMKLYRQMKEDDL----CVP---NIHTYNILIGMFMALNRMDMVREIWNHVKG-------SELGLDL--- 225 (307)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 225 (307)
.+.-.|++.+|.+++...--... ..| .-..||.|...+.+.|.+..+..+|..... .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 35567899999988866532211 011 112235565566667777777777666552 3544422
Q ss_pred --------HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791 226 --------DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 226 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 273 (307)
.+||.=+ .|...|++..|.+.|.+.... +..++..|..|..+|...
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2344333 467789999999999999876 677899999999999754
No 436
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.79 E-value=2.1e+02 Score=25.08 Aligned_cols=231 Identities=12% Similarity=0.122 Sum_probs=131.8
Q ss_pred CccHHHHHHHHHHHHhcCc------hhhHHHHHHHHHhc-CCCCc-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 021791 1 MPNVKMYTSLIYGWCKINR------IDMAERFLGEMIER-GVEPN-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF 72 (307)
Q Consensus 1 ~p~~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~ 72 (307)
||+...|+..|..|...-. ......+|+..... +..++ ...|..+...+... ....+-|..+.
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~---------~~~r~~a~~l~ 382 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL---------NEAREVAVKLT 382 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc---------chHhHHHHHhh
Confidence 4677788888887766533 33444555544433 33333 34555555555542 22223333333
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-Cchh-HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-hHHH--HHHHHHHHh
Q 021791 73 DEMRVRGIEPDVTSFSIVLHVYSRAH-KPQL-SLDKLNFMKEKGICPTVATYTSVVKCLCSCGR-IEDA--EELLGEMVR 147 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a--~~~~~~~~~ 147 (307)
..++.-|...|..-++...+.. +++- ...++..+...-..+....|+... .++ .... ..++.....
T Consensus 383 ----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 383 ----TELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred ----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 2334446667766666655332 2222 222233333332223333343333 222 2211 122233333
Q ss_pred CCCCCCHhh-HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh--cCcHHHHHHHHHHHhhC-CCCC
Q 021791 148 NGVSPSAET-YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA--LNRMDMVREIWNHVKGS-ELGL 223 (307)
Q Consensus 148 ~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~ 223 (307)
. ..|+..+ -+.++..+...+-..+|..++..+.... +|+...|..+++.=.. .-+..-++++++.+... | .
T Consensus 454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~ 528 (568)
T KOG2396|consen 454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--A 528 (568)
T ss_pred h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--C
Confidence 3 2345444 4677888889999999999999999885 7888888887765332 22377788888887754 4 5
Q ss_pred CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 224 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
++..|-..+.-=...|..+.+-.++.+..+.
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 7888887777777888888888887776654
No 437
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=45.66 E-value=97 Score=21.21 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791 105 DKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146 (307)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (307)
.+++.+.+.++......+.-+=..|.+..+..+|-.+|+-+.
T Consensus 84 vfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 84 VFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 334444455544334444445555666667777777776553
No 438
>PRK09687 putative lyase; Provisional
Probab=45.23 E-value=1.6e+02 Score=23.53 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchh--HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791 67 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQL--SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGE 144 (307)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 144 (307)
++...+..+... .|+..+-...+.++...+.... ..+.+..+...-..++..+-...+.++++.++ +++...+-.
T Consensus 90 ~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~ 166 (280)
T PRK09687 90 NVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLIN 166 (280)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHH
Confidence 344444444322 3455555555555554432111 11222222222223355666677777877776 456666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHhcCC-ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC
Q 021791 145 MVRNGVSPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL 223 (307)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (307)
+.+. ++..+-...+.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+
T Consensus 167 ~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--- 235 (280)
T PRK09687 167 LLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--- 235 (280)
T ss_pred HhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---
Confidence 6553 45556666666666653 24566677766664 35667777888888888884 5555555555432
Q ss_pred CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 021791 224 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 271 (307)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 271 (307)
+ .....+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 236 ~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 236 T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 2 234677888888885 688888888864 357777666666654
No 439
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.08 E-value=20 Score=29.05 Aligned_cols=95 Identities=14% Similarity=0.005 Sum_probs=67.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHH
Q 021791 130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMV 209 (307)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (307)
...|.++.|++.|-..+..+. +....|..-.+++.+.+.+..|++=+......+ +.+..-|-.--.+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 456778888888888777643 355566666677888888888888888777664 33344444444555568899999
Q ss_pred HHHHHHHhhCCCCCCHHh
Q 021791 210 REIWNHVKGSELGLDLDS 227 (307)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~ 227 (307)
...+....+.+..+....
T Consensus 202 a~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHHhccccHHHHH
Confidence 999998888876554433
No 440
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.70 E-value=63 Score=18.76 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=5.8
Q ss_pred CCChhHHHHHHHHHh
Q 021791 167 RKDANGAMKLYRQMK 181 (307)
Q Consensus 167 ~~~~~~a~~~~~~~~ 181 (307)
.|++-+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 441
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.62 E-value=2.3e+02 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHhcCCChhHHHHHHHHH
Q 021791 160 FFKEYRGRKDANGAMKLYRQM 180 (307)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~ 180 (307)
++.-|.+.++.++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555555544
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.86 E-value=1.1e+02 Score=20.90 Aligned_cols=44 Identities=7% Similarity=0.124 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791 172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (307)
.+.++|..|...++..--+..|..-...+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555554344455555555555555666666655543
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.83 E-value=37 Score=15.61 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHh
Q 021791 135 IEDAEELLGEMVR 147 (307)
Q Consensus 135 ~~~a~~~~~~~~~ 147 (307)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 444
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.54 E-value=48 Score=20.02 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=18.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhch
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 274 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 274 (307)
.|+.+.+.+++++..+.|..|.......+.-+..+-|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555555544444444444433
No 445
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.49 E-value=3.2e+02 Score=26.31 Aligned_cols=81 Identities=9% Similarity=-0.032 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791 170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG-SELGLDLDSYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 248 (307)
.+.-.+.|.++.+--. ..|..++..-...+...|++..+.+++.++.+ .+-.++...|-.++..+...|-- ....++
T Consensus 1212 ld~~~e~y~el~kw~d-~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~ 1289 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLD-ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFV 1289 (1304)
T ss_pred hhhHHHHHHHHHHHhh-cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHH
Confidence 3444455555544322 44566666666666777888888877766654 44456666777777776666643 344444
Q ss_pred HHHH
Q 021791 249 VEMI 252 (307)
Q Consensus 249 ~~~~ 252 (307)
+.+.
T Consensus 1290 ~~~~ 1293 (1304)
T KOG1114|consen 1290 KNWM 1293 (1304)
T ss_pred hhhe
Confidence 4443
No 446
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.40 E-value=4.7e+02 Score=28.22 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791 225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 292 (307)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (307)
..+|-...+....+|+++.|...+-...+.+ .| ..+.--..-....|+...|..++++..+...+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 4568888888888999999998887777665 23 34555667788999999999999988765443
No 447
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.19 E-value=2e+02 Score=23.92 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCh---hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC
Q 021791 159 CFFKEYRGRKDA---NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD 224 (307)
Q Consensus 159 ~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (307)
.++..+...++. -+|.-+++...... +.|...--.+++.|...|-.+.|...|..+.-+.+..|
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s--~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~D 251 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS--PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLD 251 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHH
Confidence 444444455554 45777777777665 66777778889999999999999999988765544433
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.70 E-value=1e+02 Score=20.35 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791 122 YTSVVKCLCSCGRIEDAEELLGEMVR 147 (307)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (307)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 449
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=41.55 E-value=1.7e+02 Score=22.89 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhhCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIER----GVEPNVVTYNVLLNGVCRRAS 54 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~ 54 (307)
|-...-..++....+....++..++++.+... |..|+......++.+++..|+
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GS 65 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGS 65 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcC
Confidence 55555666777777777777777777766544 234566788888888888774
No 450
>PRK10941 hypothetical protein; Provisional
Probab=41.54 E-value=1.8e+02 Score=23.11 Aligned_cols=80 Identities=10% Similarity=-0.049 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHH
Q 021791 192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGL 270 (307)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 270 (307)
..+.+-.+|.+.++++.|.++.+.+...... ++.-+.--.-.|.+.|.+..|..=++..++. --.|++......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4566777889999999999999999987422 4555665666788999999999999998766 2345556666666555
Q ss_pred hh
Q 021791 271 IQ 272 (307)
Q Consensus 271 ~~ 272 (307)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.54 E-value=2.1e+02 Score=24.04 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=40.2
Q ss_pred HHHHhcCCchhHHHHHHHHHHcCCCCchh--hHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 021791 92 HVYSRAHKPQLSLDKLNFMKEKGICPTVA--TYTSVVKCLC--SCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 148 (307)
..+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999887 555444 3444555554 345788899999887764
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.50 E-value=1.2e+02 Score=21.16 Aligned_cols=68 Identities=7% Similarity=0.081 Sum_probs=35.8
Q ss_pred CCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 116 CPTVATYTSVVKCLCSCGR---IEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 116 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
.++..+-..+..++.++.+ ..+...+++++.+.. ..-.......|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444555555556665553 334555666665421 1112233334444566677777777777766665
No 453
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=40.71 E-value=1.8e+02 Score=25.56 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
|+..+-..++.-+...|-...-+..+.-+++.....+...+.+|+..|.+.. ....-+++.-+..+.-.|+-
T Consensus 82 ~~~ts~~k~~~~lls~GT~~DrIsalTLLVq~sP~h~~k~letLls~C~kks--------rn~a~q~l~~lKDLfi~gll 153 (821)
T COG5593 82 PDATSQAKIEKDLLSHGTVKDRISALTLLVQRSPSHNAKNLETLLSFCEKKS--------RNVAYQVLKNLKDLFISGLL 153 (821)
T ss_pred CCchHHHHHHHHHHhcCchhhhhhhhHhhhccCcchHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHhcccC
Confidence 5566666778888888888888888888887755455888999998887743 22233455555555556666
Q ss_pred CCH
Q 021791 82 PDV 84 (307)
Q Consensus 82 ~~~ 84 (307)
||.
T Consensus 154 p~r 156 (821)
T COG5593 154 PNR 156 (821)
T ss_pred cch
Confidence 664
No 454
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.46 E-value=1.9e+02 Score=23.23 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHhcCCCCCHH-HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791 75 MRVRGIEPDVT-SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGE 144 (307)
Q Consensus 75 ~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 144 (307)
.+..|-.|++. +|.++...-+.. -.+.|...|.......+.....+...|...+..+ ...|..+|..
T Consensus 20 aIn~G~vP~iesa~~~~~e~e~~~-A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 20 AINSGSVPCIESAWQAVAEAENRA-AVEKAVEHYEEQMEQRVKLPTETLEELLELHEQC--EKEALEVFMK 87 (297)
T ss_dssp HHHTTS--BHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHhCCCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHHHHHHHHH
Confidence 34445455553 355444433322 2456666665533222222333445555544333 4556666654
No 455
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.38 E-value=1.2e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=14.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791 196 LIGMFMALNRMDMVREIWNHVKGSE 220 (307)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (307)
+++.+.++...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555556666666666666554
No 456
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.12 E-value=1.3e+02 Score=22.90 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhCCCC-------CCHhhHHHHHHHHhcCCC
Q 021791 135 IEDAEELLGEMVRNGVS-------PSAETYNCFFKEYRGRKD 169 (307)
Q Consensus 135 ~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~ 169 (307)
.+.|..++..|--..++ ....-|..+..+|.+.|-
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~ 178 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF 178 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC
Confidence 45666666666433211 144556666666666653
No 457
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.71 E-value=2e+02 Score=22.82 Aligned_cols=203 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCC
Q 021791 63 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGR 134 (307)
Q Consensus 63 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~ 134 (307)
+.+..+...+......+ +......+...|.. ..+...|.++|...-+.| .......|...|.. ..+
T Consensus 55 ~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccC
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC-----CChh--HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791 135 IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR-----KDAN--GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD 207 (307)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (307)
..+|...|++.-+.|..+...+...+-..|... -..+ .|...+.+....+...-....-........-..+.+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC---------------cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791 208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ---------------KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272 (307)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 272 (307)
+|...|....+.|. ......+- .+...| +...|...+......+..........+-.....
T Consensus 209 ~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (292)
T COG0790 209 KAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSA 284 (292)
T ss_pred HHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhC
Q ss_pred chh
Q 021791 273 SDM 275 (307)
Q Consensus 273 ~g~ 275 (307)
.+.
T Consensus 285 ~~~ 287 (292)
T COG0790 285 RGS 287 (292)
T ss_pred cCC
No 458
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.19 E-value=94 Score=21.66 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163 (307)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (307)
|...++. +.+.|-..+...+++++.+.|+..+...|+.++.-
T Consensus 112 tlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3333333 34557777777888888877877777777766654
No 459
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.82 E-value=1.1e+02 Score=19.42 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 189 NIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
|...--.+...+...|++++|.+.+-.+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444445555555444444443
No 460
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.59 E-value=2.6e+02 Score=23.81 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-----
Q 021791 41 TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----- 113 (307)
Q Consensus 41 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 113 (307)
.+.-+...|.. .|+++.|++.|.+...-- .+-.+..|..+|..-...|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~----------cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 152 ALEDLGDHYLD----------CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHH----------hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 45556666666 788999999998865431 1223445677777888889998888887777654
Q ss_pred ----CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-C-----CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 114 ----GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN-G-----VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 114 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
.+.+-...+..+...+.+ ++..|...|-..... . +.|...+....+.+..--++-+--..+.....-.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 122333344444444333 566655554333221 1 2233333333333333333332222222211111
Q ss_pred CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791 184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG 218 (307)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (307)
......+.....+...| .+++....+++++++.
T Consensus 300 ~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 300 LFLELEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 11122334455555554 4568888888887765
No 461
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.97 E-value=76 Score=19.59 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=23.8
Q ss_pred cCcHHHHHHHHHHHHHc---CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791 238 KQKWKEACQYFVEMIEK---GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 288 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (307)
.|+.+.|+..|++.++. |+..... .......++.|.++-++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 46677777777655432 3322221 23344556667776666654
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.90 E-value=1.1e+02 Score=19.30 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791 211 EIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM 251 (307)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 251 (307)
++|+-....|+..|...|..+++.+.-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444455555555555554444433444444444444
No 463
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=36.80 E-value=3e+02 Score=24.38 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=50.4
Q ss_pred HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC--HHHHH
Q 021791 11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD--VTSFS 88 (307)
Q Consensus 11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 88 (307)
++++.+.|+..+|..++.++.. .+.|.....-.++.+-.... .++...|...+.......++++ ...|.
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la--------~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q 140 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALA--------QKQPAAALQQLAKLLPADLSQNQQARYYQ 140 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHh--------ccChHHHHHHHhhcchhhcCHHHHHHHHH
Confidence 4667778888888888888776 56666666667776655433 5566777777776655544444 33455
Q ss_pred HHHHHHHhcCC
Q 021791 89 IVLHVYSRAHK 99 (307)
Q Consensus 89 ~ll~~~~~~~~ 99 (307)
..+.+....|+
T Consensus 141 ~~a~a~ea~~~ 151 (604)
T COG3107 141 ARADALEARGD 151 (604)
T ss_pred HHHHHHhcccc
Confidence 55555544433
No 464
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.37 E-value=3.8e+02 Score=25.35 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHH-hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791 137 DAEELLGEMV-RNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181 (307)
Q Consensus 137 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (307)
+..+.++.+. ..|+..+......+.. ...|+...++.++++..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 3444444433 2344444444444433 33566666666665544
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.17 E-value=2e+02 Score=22.11 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHhhH--HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH
Q 021791 116 CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP---SAETY--NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI 190 (307)
Q Consensus 116 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (307)
.+...-++.|+--|.-...+.+|-..|..- .|+.| +..++ ..-|......|+.+.|.+...++...-. ..|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiL-d~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEIL-DTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHH-ccch
Confidence 344445555555555555555555555432 23333 33333 2345566788888888888887765432 3333
Q ss_pred HHHHHHHH----HHHhcCcHHHHHHHHHHH
Q 021791 191 HTYNILIG----MFMALNRMDMVREIWNHV 216 (307)
Q Consensus 191 ~~~~~l~~----~~~~~~~~~~a~~~~~~~ 216 (307)
..+-.|.. -..+.|..++|.++.+.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211 123556666666655443
No 466
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=35.93 E-value=2e+02 Score=22.52 Aligned_cols=110 Identities=8% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHhcCc--HHHHHHHHHHH----hhCCC
Q 021791 151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVPNIHTYNILIGMFMALNR--MDMVREIWNHV----KGSEL 221 (307)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~----~~~~~ 221 (307)
.|-...-..++....+....++...+++.+..... ..++......++++++..|. +.-+..++++. +..+
T Consensus 8 ~P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~- 86 (253)
T PF09090_consen 8 LPFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELE- 86 (253)
T ss_dssp STTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-
Confidence 35556666677777677667777777776655432 02345666777777776663 33333333332 2221
Q ss_pred CCCHHhHHHHHHHHH--ccCcHHHHHHHHHHHHHcCCCCcHh
Q 021791 222 GLDLDSYTMLIHGLC--EKQKWKEACQYFVEMIEKGLLPQKV 261 (307)
Q Consensus 222 ~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~ 261 (307)
.++...=..++.+.. -..+..-+.-+.++|++.|+-....
T Consensus 87 ~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~ 128 (253)
T PF09090_consen 87 AESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSA 128 (253)
T ss_dssp TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHH
T ss_pred cCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHH
Confidence 223333333443332 2355666777777777776643333
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.69 E-value=1.3e+02 Score=19.71 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791 8 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE 81 (307)
Q Consensus 8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 81 (307)
..++..|...|+.++|...+.++... .-.......++..+...+ ...-+....++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~--------~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEK--------KSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHHhcCCC
Confidence 45667788889999999998886332 112333444444444421 33445556666666666543
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.69 E-value=2.1e+02 Score=22.30 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=63.8
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CC-----------CCCCHHhHHHH
Q 021791 164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG-SE-----------LGLDLDSYTML 231 (307)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----------~~~~~~~~~~l 231 (307)
|.+..+..-..++.+-....+. +-+.....+++ +...|+..+|...++.-.. .| -.|.+.....+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv-~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKV-NYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCC-CCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 4444444434444444433333 33444444443 4467888888877765432 11 24777788888
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791 232 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272 (307)
Q Consensus 232 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 272 (307)
+..|. .+++++|.+.+.++.+.|+.|... .+.+.+.+-.
T Consensus 246 l~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 246 LQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred HHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 88766 468999999999999999987653 4445555433
No 469
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=35.54 E-value=3.5e+02 Score=24.69 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=32.1
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhC
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA 53 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 53 (307)
.+|-.|.++|+++.|.++..+.... .......+...+..+....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3678899999999999999666543 4556677788888887753
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.21 E-value=2.1e+02 Score=22.12 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791 9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR 78 (307)
Q Consensus 9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 78 (307)
.++..+-+.|+++++.+.+.++...+...+..--+.|-.+|-.. .+....+++++..+.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~---------i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV---------IGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc---------cccchHHHHhhhhHhhh
Confidence 36677788899999999999999988888888877777777654 56666677777666543
No 471
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.16 E-value=2.1e+02 Score=22.02 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH--HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh
Q 021791 150 VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN--ILIGMFMALNRMDMVREIWNHVKGSELGLDLDS 227 (307)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (307)
+.+...-+|.|+--|.-...+.+|...|..-........|..++. .-|......|+.+.|.+........-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 445666677777666666666666665544332221012333332 345566777888888877776654323333322
Q ss_pred HHHHHH----HHHccCcHHHHHHHHHH
Q 021791 228 YTMLIH----GLCEKQKWKEACQYFVE 250 (307)
Q Consensus 228 ~~~li~----~~~~~g~~~~a~~~~~~ 250 (307)
+-.+.. =..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222211 12455666666666554
No 472
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.87 E-value=3.2e+02 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=17.4
Q ss_pred CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791 148 NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181 (307)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (307)
.|+..+......+.. ...|+...|+.++++..
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 355555555544443 34566666666666644
No 473
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.85 E-value=2e+02 Score=21.65 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791 155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184 (307)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (307)
...+.++..+...|+++.|.+.|.-+....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 445667777777777777777777777654
No 474
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=34.79 E-value=4.4e+02 Score=26.53 Aligned_cols=159 Identities=9% Similarity=0.056 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791 101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180 (307)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (307)
+.|.++.+.+........ ...++.-|.-..+---|+-.+-+..-. -||..|-..||.-=...++|.. .+
T Consensus 50 ~~a~~l~~~~r~~~~~~~---~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~------h~ 118 (1208)
T PRK11905 50 ERARKLVEALRAKRKGTG---VEALLQEYSLSSQEGVALMCLAEALLR--IPDTATRDALIRDKIAPGDWKS------HL 118 (1208)
T ss_pred HHHHHHHHHHHcCCCccc---HHHHHHhcCCCcHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhccCChhh------hc
Confidence 557777777775532211 667777777666555566555554433 5788999999887777777742 22
Q ss_pred hhcCCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHhhCCCCCCHHh-----HHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 181 KEDDLCVPNIHTYNILIGMFMALN-RMDMVREIWNHVKGSELGLDLDS-----YTMLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
.+....-.|..+|..++..-.-.- +-......+..+.++.-.|-... ...|-+-|+--...++|++..+++.+.
T Consensus 119 ~~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~~ 198 (1208)
T PRK11905 119 GGSKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEAR 198 (1208)
T ss_pred CCCCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHhC
Confidence 233223457778887776543321 12333456666665543332221 123334455556789999999999998
Q ss_pred CCCCcHhhHHHHHHHHhhc
Q 021791 255 GLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 255 ~~~p~~~~~~~l~~~~~~~ 273 (307)
|+. .++..+..+-...
T Consensus 199 G~~---~s~D~LGE~~~t~ 214 (1208)
T PRK11905 199 GYR---YSYDMLGEAARTA 214 (1208)
T ss_pred CCE---EEEEeccCCcCCH
Confidence 876 4566666554433
No 475
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=34.29 E-value=2.2e+02 Score=22.09 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE 112 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (307)
...+.+|...++.-... ..+..+...+.-++...|+...+.++++.+.+
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 45566666666555332 34555555555666666677777777776654
No 476
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.82 E-value=3e+02 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=12.5
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhc
Q 021791 10 LIYGWCKINRIDMAERFLGEMIER 33 (307)
Q Consensus 10 li~~~~~~g~~~~a~~~~~~~~~~ 33 (307)
|++...-.|++....+.++.|.+.
T Consensus 241 LlR~H~lLgDhQat~q~idi~pk~ 264 (525)
T KOG3677|consen 241 LLRMHILLGDHQATSQILDIMPKE 264 (525)
T ss_pred HHHHHHHhhhhHhhhhhhhcCchh
Confidence 344444455655555555555443
No 477
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=33.81 E-value=3.5e+02 Score=24.23 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 021791 133 GRIEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVRE 211 (307)
Q Consensus 133 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (307)
|++++|+...+.....+ ......+-..+ .-++...........++.+.+.+ |--..+..-++..+.. ...+.+
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~l-le~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHL-LEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHH-HHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhhh---HHHHHH
Confidence 67777777666654332 22122222223 33344556777778888887764 2223333333333222 555666
Q ss_pred HHHHH-hhCCCCCCHHhHHHHHHHHHc-----c---CcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhc
Q 021791 212 IWNHV-KGSELGLDLDSYTMLIHGLCE-----K---QKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQS 273 (307)
Q Consensus 212 ~~~~~-~~~~~~~~~~~~~~li~~~~~-----~---g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 273 (307)
+++.+ ......|...+|..+..++.+ . .+...+++++-.+++. +..-|..+|..+.....+.
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 66654 234556888889888888877 2 3445666666666655 4455556666655544433
No 478
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=33.61 E-value=1.1e+02 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=17.3
Q ss_pred HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791 95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK 127 (307)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 127 (307)
-+.|-..+...++++|.+.|+..+...|+.++.
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 344455555555555555555555555554443
No 479
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.55 E-value=1.7e+02 Score=20.52 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc-CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 021791 74 EMRVRGIEPDVTSFSIVLHVYSRA-HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI 135 (307)
Q Consensus 74 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 135 (307)
.+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456676655432 3445555554 46778999999999988777777776777777777654
No 480
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=33.24 E-value=40 Score=19.68 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=8.6
Q ss_pred CChhHHHHHHHHHhhcCC
Q 021791 168 KDANGAMKLYRQMKEDDL 185 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~ 185 (307)
-+++.|...|.++...+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~ 56 (63)
T smart00804 39 WDYERALKNFTELKSEGS 56 (63)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344555555555544443
No 481
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.75 E-value=2.1e+02 Score=21.43 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHH
Q 021791 190 IHTYNILIGMFMALNRMDMVREIWN 214 (307)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (307)
-...|.....+.+.|.+|.|..+++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444555555566666666666555
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.64 E-value=2.9e+02 Score=22.90 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh------cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR------AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI 135 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 135 (307)
.+-++++..++++....+. |........|.++.. .-+|.....+|+.+...+..| ..+.|.- -+.++..-+
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRA-VAla~~~Gp 345 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRA-VALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHH-HHHHHhhhH
Confidence 3444566666666666653 566666666655532 235666666666666654332 2223322 223444445
Q ss_pred HHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791 136 EDAEELLGEMVRNGVSPSAET-YNCFFKEYRGRKDANGAMKLYRQMKED 183 (307)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (307)
+.++.+.+-+...+---+-+. +..=...+.+.|+.++|..-|++....
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 566666666554421112222 222334456667777777777766655
No 483
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.36 E-value=2.4e+02 Score=21.90 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHHc
Q 021791 232 IHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 232 i~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
+-++.+.++.+.+..+.+-+.++
T Consensus 199 LLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 199 LLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 33444557777777777777665
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.69 E-value=4.7e+02 Score=25.07 Aligned_cols=166 Identities=12% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK 168 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (307)
++|..+.+.|-++-|+.+.+.=..+ ...+..+|+++.|++.-..+ -+..+|..|...-...|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 4555666777777776655432111 12345678888887765554 26788888988888889
Q ss_pred ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791 169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF 248 (307)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 248 (307)
+.+-|+..|++...-+ .|--.|.-.|+.++-.++.+....++ |..+ ....-.-.|+.++-.+++
T Consensus 687 n~~IaEm~yQ~~knfe----------kLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKNFE----------KLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKIL 750 (1202)
T ss_pred chHHHHHHHHHhhhhh----------heeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHH
Confidence 9888888887765432 23334556788888777776665442 2221 111112356777766666
Q ss_pred HHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCccc
Q 021791 249 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 297 (307)
Q Consensus 249 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 297 (307)
+.. |..|-+ |. .-..+|.-++|.++.++......++....
T Consensus 751 ~n~---g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~~~~lP~~~ 790 (1202)
T KOG0292|consen 751 ENG---GQLPLA--YL----TAAAHGLEDQAEKLGEELEKQVPSLPEVD 790 (1202)
T ss_pred Hhc---CcccHH--HH----HHhhcCcHHHHHHHHHhhccccCCCCCCC
Confidence 543 433321 11 23457888899999999988766665433
No 485
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.57 E-value=2.5e+02 Score=21.95 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=65.5
Q ss_pred hcCchhhHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHH
Q 021791 16 KINRIDMAERFLGEMIERGVEPNV-VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS-FSIVLHV 93 (307)
Q Consensus 16 ~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~ 93 (307)
....+..|...|.+.+.. .|+. .-|..-+.++.+ .++++.+.+--.+.++. .||..- .-.+..+
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk----------~~~~~~v~~dcrralql--~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLK----------LKHWEPVEEDCRRALQL--DPNLVKAHYFLGQW 87 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHH----------hhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHH
Confidence 345577777777666554 5666 344555556666 55566655555444443 455443 3344455
Q ss_pred HHhcCCchhHHHHHHHHHH----cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 021791 94 YSRAHKPQLSLDKLNFMKE----KGICPTVATYTSVVKCLCSCGRIEDAEELLGEM 145 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 145 (307)
......++.++..+.+... ..+.+-......|..+=-+.=...+..++.++.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 6667778888888777632 334444555555555544444445555555544
No 486
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=31.55 E-value=5e+02 Score=26.18 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791 62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL 141 (307)
Q Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 141 (307)
..-...|.++.+.+........ ...+++-|.-..+-.-|+-.+.+..-+ .||..|-..||.-=...++|..=..
T Consensus 46 ~~~~~~a~~l~~~~r~~~~~~~---~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~h~~- 119 (1208)
T PRK11905 46 AAIRERARKLVEALRAKRKGTG---VEALLQEYSLSSQEGVALMCLAEALLR--IPDTATRDALIRDKIAPGDWKSHLG- 119 (1208)
T ss_pred HHHHHHHHHHHHHHHcCCCccc---HHHHHHhcCCCcHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhccCChhhhcC-
Confidence 3444667777777775532211 677777777666555555555544433 5788888888887777777642110
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhc-CCChhHHHHHHHHHhhcCCCCccHH-----HHHHHHHHHHhcCcHHHHHHHHHH
Q 021791 142 LGEMVRNGVSPSAETYNCFFKEYRG-RKDANGAMKLYRQMKEDDLCVPNIH-----TYNILIGMFMALNRMDMVREIWNH 215 (307)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~ 215 (307)
.....-.|..+|..++.+-.- ..+-......+..+.+... .|-.. ....+..-|+--...++|.+..+.
T Consensus 120 ----~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~ 194 (1208)
T PRK11905 120 ----GSKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLG-EPVIRKAVDMAMRMMGEQFVTGETIEEALKRARE 194 (1208)
T ss_pred ----CCCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHH
Confidence 011233477888888876333 2222444566666666543 33221 112334445555678999999999
Q ss_pred HhhCCCCCCHHhHHHHHH
Q 021791 216 VKGSELGLDLDSYTMLIH 233 (307)
Q Consensus 216 ~~~~~~~~~~~~~~~li~ 233 (307)
+...|+. .+++.+.+
T Consensus 195 l~~~G~~---~s~D~LGE 209 (1208)
T PRK11905 195 LEARGYR---YSYDMLGE 209 (1208)
T ss_pred HHhCCCE---EEEEeccC
Confidence 9988875 34444443
No 487
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.46 E-value=4.1e+02 Score=24.30 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-------------CCHHhHHHHHHHHHc
Q 021791 171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG-------------LDLDSYTMLIHGLCE 237 (307)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~li~~~~~ 237 (307)
++....+...........+......++.. ..|+...+..++++....+.. ++......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 44555555544332225566666666653 468888888888765543311 12333344555544
Q ss_pred cCcHHHHHHHHHHHHHcCCCCc
Q 021791 238 KQKWKEACQYFVEMIEKGLLPQ 259 (307)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~p~ 259 (307)
.|+...++.+++++.+.|..|.
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4788888888888888876544
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.22 E-value=4.5e+02 Score=24.68 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch----------hhHHHHHHHHHhcCChH
Q 021791 70 KVFDEMRVRGIEPD---VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV----------ATYTSVVKCLCSCGRIE 136 (307)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~ 136 (307)
..+.+|.+.--.|+ ..+...++-.|....+++...++.+.+++. ||. ..|..-++--.+-|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 44566665532333 455667777888888999999999998875 321 12333334344667888
Q ss_pred HHHHHHHHHHhCC--CCCCHhhH-----HH--HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH---HHHHHHHHHhcC
Q 021791 137 DAEELLGEMVRNG--VSPSAETY-----NC--FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT---YNILIGMFMALN 204 (307)
Q Consensus 137 ~a~~~~~~~~~~~--~~~~~~~~-----~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 204 (307)
+|+.+.-.+.+.. +.||.... -- +-+.|...+..+.|...|++..+. .|+..+ +..|+.+....
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev---eP~~~sGIN~atLL~aaG~~- 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV---EPLEYSGINLATLLRAAGEH- 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc---CchhhccccHHHHHHHhhhh-
Confidence 8988887777653 44554322 11 123355667778899999988776 454433 33444433221
Q ss_pred cHHHHHHH------HHHHhh-CCCCCCHHhHH---HHHHHHHccCcHHHHHHHHHHHHHc
Q 021791 205 RMDMVREI------WNHVKG-SELGLDLDSYT---MLIHGLCEKQKWKEACQYFVEMIEK 254 (307)
Q Consensus 205 ~~~~a~~~------~~~~~~-~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~ 254 (307)
++...++ +..+.. +|.--....|. ..+.+-+-.+++.+|+..-+.|-+.
T Consensus 337 -Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 337 -FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 2211111 222221 22111222222 2334445678888898888888754
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.13 E-value=2.4e+02 Score=21.61 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=56.0
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791 122 YTSVVKCLC--SCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM 199 (307)
Q Consensus 122 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (307)
|...+.++- ..+++++|.+.+-.- .+.| ..-..++.++...|+.+.|..+++...... .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l---~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL---SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC---CCHHHHHHHHHH
Confidence 444455443 345666666665221 1111 222346777777788888888887765432 223333333333
Q ss_pred HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791 200 FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE 237 (307)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (307)
...+.+.+|...-+...+.. ....+..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 45677777777666555421 23456666666553
No 490
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.71 E-value=2.2e+02 Score=24.95 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=68.9
Q ss_pred HHhcCCchhHHHHHHHHH---HcCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCH----
Q 021791 94 YSRAHKPQLSLDKLNFMK---EKGICPT-----VATYTSVVKCLCSCGRIEDAEELLGEMVR-------NGVSPSA---- 154 (307)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 154 (307)
+.-.|++.+|.+++...- ..|...+ ...||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445788888888875542 2232112 23346666666777777777766666553 3555432
Q ss_pred -------hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 021791 155 -------ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM 201 (307)
Q Consensus 155 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (307)
.+||. .-.|...|++-.|.+.|......- ..++..|-.|..+|.
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 23443 335778899999999998887764 578889999988886
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.36 E-value=3.2e+02 Score=22.65 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791 89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED-AEELLGEMVRNGVSPSAETYNCFFKEYRGR 167 (307)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (307)
.+.+.+++.++.+.+..+-+.+... .......+..++-...-.+. +..+.+.+... ||......++++....
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~l----P~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~ 243 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHL----PPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSA 243 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhC----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCC
Confidence 3445556655555544444443332 22233344444444333332 23333333332 5666666666666555
Q ss_pred CChhHHHHHHHHHhhc
Q 021791 168 KDANGAMKLYRQMKED 183 (307)
Q Consensus 168 ~~~~~a~~~~~~~~~~ 183 (307)
.........+..+...
T Consensus 244 ~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 244 PASDLVAILIDALLQS 259 (340)
T ss_pred CchhHHHHHHHHHhcC
Confidence 5544444444444444
No 492
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=30.36 E-value=2.7e+02 Score=21.93 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=42.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcC-CCC-----cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791 230 MLIHGLCEKQKWKEACQYFVEMIEKG-LLP-----QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290 (307)
Q Consensus 230 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (307)
.+..-|.+.|+.+.|-.++--+.+.+ ... +......++......++++-+.++.+-+...+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 56667777888888877777665442 222 23445567777888899999999888775543
No 493
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=30.25 E-value=2.5e+02 Score=21.45 Aligned_cols=62 Identities=5% Similarity=0.093 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHccC---------cHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791 226 DSYTMLIHGLCEKQ---------KWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 287 (307)
Q Consensus 226 ~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (307)
.-|..+..+|.+.| +.+.-..+++..++.|++ .=++.|.++|+.-...-+.++..+++..++
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 34455555555544 334445555555665543 223567777765555556677777766554
No 494
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=29.89 E-value=19 Score=20.28 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.4
Q ss_pred CchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 021791 18 NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 51 (307)
Q Consensus 18 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 51 (307)
|=..+.+++|..|..+...|....|+..+.-|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 4567889999999999999999999888876655
No 495
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.85 E-value=4e+02 Score=23.64 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=10.4
Q ss_pred CcHHHHHHHHHHHHHcCCCC
Q 021791 239 QKWKEACQYFVEMIEKGLLP 258 (307)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~p 258 (307)
|+.+.++.+++++.+.|..|
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555555444
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=3e+02 Score=22.23 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCchhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 021791 79 GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICPTVATYT-SVVKCLCSCGRIEDAEELLGEMVRNGVSPS 153 (307)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (307)
|-.--...+..+...|++.++.+.+.++..+..+. |.+.|....- .|.-.|....-+++-++..+.|.+.|...+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 33445667888999999999999998887666543 5554543222 223334555557778888888888876433
Q ss_pred H----hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791 154 A----ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM 199 (307)
Q Consensus 154 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (307)
. .+|..+- +....++.+|-.++......-. ......|...+..
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~-S~El~sY~~~vrY 236 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDILPTFE-SSELISYSRAVRY 236 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcccc-ccccccHHHHHHH
Confidence 2 2333332 2334567777777776655432 2333444444433
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.61 E-value=5.9e+02 Score=25.53 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=82.9
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC-----
Q 021791 117 PTVATYTSVVKCLCSCGRIEDAEELLGEMV-------RNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD----- 184 (307)
Q Consensus 117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 184 (307)
+....|..+...+.+.++.++|...-.... .....-+...|..+...+...++...|...+.+....-
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 356667788888889999988877654322 11222234455555555666667777777776654321
Q ss_pred -CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC----C---CCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791 185 -LCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE----L---GLDLDSYTMLIHGLCEKQKWKEACQYFV 249 (307)
Q Consensus 185 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 249 (307)
.-+|...+++.+-..+...++.+.|.++.+.+.... . -.+..++..+.+.+...+++..|....+
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 114555566666666666788888888888776531 1 1245567777777777777776555443
No 498
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=4.2e+02 Score=23.85 Aligned_cols=164 Identities=10% Similarity=-0.013 Sum_probs=102.3
Q ss_pred cCchhhHHHHHHHHHhc----C-------CCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC--
Q 021791 17 INRIDMAERFLGEMIER----G-------VEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-- 83 (307)
Q Consensus 17 ~g~~~~a~~~~~~~~~~----~-------~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 83 (307)
...+++|...|.-.... + .+-.+.+.-.+-..+..+|+..-+ .+-++.++-.|++.....+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~a---adLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMA---ADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhH---HHHHHHHHHHHHHHhccccccccc
Confidence 34466777777655443 1 112344455555566666665544 5567888888888876544432
Q ss_pred -----------HHHHHHH---HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHhC
Q 021791 84 -----------VTSFSIV---LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLC-SCGRIEDAEELLGEMVRN 148 (307)
Q Consensus 84 -----------~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~ 148 (307)
...|.++ |....+.|.+..|+++-+.+.+....-|+.....+|..|+ +..+++-.+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3333333 3456788999999999998888866557777888888876 566788888888777543
Q ss_pred ---CCCCCHhhHHHHHHHHhcCCC---hhHHHHHHHHHhhc
Q 021791 149 ---GVSPSAETYNCFFKEYRGRKD---ANGAMKLYRQMKED 183 (307)
Q Consensus 149 ---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 183 (307)
...|+-..-.++...|..... ...|...+.+....
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 233454444455556665555 34566666555543
No 499
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.29 E-value=2.6e+02 Score=21.28 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=12.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHc
Q 021791 91 LHVYSRAHKPQLSLDKLNFMKEK 113 (307)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~ 113 (307)
.....+.|+.++|.+.|..+...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 33444556666666666555554
No 500
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=29.08 E-value=2.7e+02 Score=26.95 Aligned_cols=102 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791 135 IEDAEELLGEMVRNGVSPS-AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW 213 (307)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (307)
.+.+...++.+...-..+- ...|.. +.....+.++.++|+.|...++..--...|-.....+.+.+.+.+|..+|
T Consensus 62 lerc~~~~~~lk~Y~nD~Rfl~~~~~----~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~ 137 (974)
T KOG1166|consen 62 LERCLEELEDLKRYRNDPRFLILWCS----LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVF 137 (974)
T ss_pred HHHHHHhccchhhccccHHHHHHHHh----HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791 214 NHVKGSELGLDLDSYTMLIHGLCEKQK 240 (307)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (307)
+.-.+....|-...-..+.....+.++
T Consensus 138 q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 138 QLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhh
Done!