BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021792
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a
PE=1 SV=1
Length = 380
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244
RQ RS+ RK++YIAELER V+ QT L A++ALL + L+ ENS+LK ++ +
Sbjct: 192 RQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTM 251
Query: 245 QKEKLIMEGQYQYLKKEAERLKVS 268
+++ + + LK E +RLKV+
Sbjct: 252 EQQVHLQDALNDTLKSEVQRLKVA 275
>sp|Q8W3M7|Y4598_ARATH Uncharacterized protein At4g06598 OS=Arabidopsis thaliana
GN=At4g06598 PE=2 SV=2
Length = 265
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 3 RQPHLPPRCPFQKKHVSGPIHDPISPP----------QRAESYVRHHKSSSQSSILEDQP 52
+Q LPP+ PF GP P + E HH++SS+S ++E+QP
Sbjct: 18 KQALLPPKSPF----TGGPTFSADFVPSSVIGSKAVQKLGEGNANHHRTSSESFLIEEQP 73
Query: 53 AWLDNLLSDPGANSVGILHRRSASDSVTLLDGIVGSFLD 91
+WLD+LL++P HRRS+SDS +D VG +D
Sbjct: 74 SWLDDLLNEPETPVRKGGHRRSSSDSFAYVDVPVGFDVD 112
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQT 211
A+TK ++QF QRSRVRK+QYIAELER V+ Q
Sbjct: 232 ADTKRARQQFAQRSRVRKIQYIAELERNVQMLQV 265
>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b
PE=1 SV=1
Length = 329
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 182 MTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241
+ RQ RS+ RK +YI ELER V+ QT L A++ L + LS EN++LK ++
Sbjct: 140 LANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRL 199
Query: 242 ARVQKEKLIMEGQYQYLKKEAERLKVS 268
++++ + + LK+E ERLK++
Sbjct: 200 QAMEQQAQLRDALNDALKQELERLKLA 226
>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana
GN=POSF21 PE=2 SV=1
Length = 398
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244
RQ RS+ RK +YI ELER V+ QT L A++ LL + L++EN++LK ++ +
Sbjct: 212 RQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTM 271
Query: 245 QKEKLIMEGQYQYLKKEAERLKV-SLAISPRSKVKTYFGTN 284
+++ + + + LK+E + LKV + ++P + FG+N
Sbjct: 272 EQQVHLQDELNEALKEEIQHLKVLTGQVAPSALNYGSFGSN 312
>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
Length = 341
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%)
Query: 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237
A+ + RQ RS+ RK++Y ELER V+ Q L A+V +L + L+ EN L
Sbjct: 198 AKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHL 257
Query: 238 KQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKTY 280
K ++ ++++ + + + L+ E RLKV P+ +Y
Sbjct: 258 KMRLQALEQQAELRDALNEALRDELNRLKVVAGEIPQGNGNSY 300
>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
Length = 151
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 181 KMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQK 240
+++ R+ +RSR+RK Q++ EL + V Q A + AR + Q+ + EN+ L+ +
Sbjct: 31 RLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRAR 90
Query: 241 IA 242
A
Sbjct: 91 AA 92
>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2
Length = 2022
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKK 260
LE+TV +T++ ++ +++L L + +L + L++++AR++ EK IM +Y L+K
Sbjct: 1682 LEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMNDKYDELEK 1740
>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 164 DLNGDIHTL----TGEHNAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGAR 219
D++G++ L E K + R+ +RSR RK ++ ELE V + + L R
Sbjct: 211 DMDGEVEILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRR 270
Query: 220 VALLLQQHVSLSMENSKLKQKI 241
+A L Q++ +++N L+ +
Sbjct: 271 IAALNQKYNDANVDNRVLRADM 292
>sp|Q10QP3|HOX13_ORYSJ Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp.
japonica GN=HOX13 PE=2 SV=1
Length = 311
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 174 GEHNAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVA--LLLQ-QHVSL 230
G H A++ G++ R L+ + LER+ + L D AR+A L LQ + V++
Sbjct: 56 GGHAAQSPSPSCGLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAV 115
Query: 231 SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266
+N + + K +++++ + ++ L+ + + L+
Sbjct: 116 WFQNRRARWKTKQLERDFAALRARHDALRADCDALR 151
>sp|Q6ZWQ0|SYNE2_MOUSE Nesprin-2 OS=Mus musculus GN=Syne2 PE=1 SV=2
Length = 6874
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 18/90 (20%)
Query: 191 SRVRKLQYIAELERTVEYFQTLQADLGARVA------------LLLQQHVSLSMENSKLK 238
S + L+ + EL+RTV LQ + +RVA L LQQ + +++E KL+
Sbjct: 888 SLAKYLRAVEELKRTVPGGAKLQLEEQSRVASAKWEPLRHEISLYLQQ-LKIAIEEEKLR 946
Query: 239 QKIARVQKE-----KLIMEGQYQYLKKEAE 263
IAR++K+ KLI G+ + L+KE E
Sbjct: 947 DNIARLEKQINKEKKLIRRGRTRGLRKEHE 976
>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana
GN=ABF1 PE=1 SV=1
Length = 392
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244
R+ RSR RK Y ELE +E + + DL + A +++ H S E SK +A+
Sbjct: 322 RESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEFSKQPPLLAKR 381
Query: 245 QKEKLIMEGQY 255
Q + + G +
Sbjct: 382 QCLRRTLTGPW 392
>sp|Q8Y193|SYA_RALSO Alanine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=alaS PE=3 SV=1
Length = 884
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 188 GQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247
G + +R+++ I + + Y QTL +G A +L + S+L Q+I +VQ
Sbjct: 696 GVAAGIRRVEAITG-DNVLHYLQTLDTRIGEAAA-------ALRAQPSELTQRIVQVQD- 746
Query: 248 KLIMEGQYQYLKKEAERLKVSLAIS 272
Q + L+KE ERLK LA S
Sbjct: 747 ------QVKSLEKELERLKSKLAAS 765
>sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1
Length = 2345
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 55 LDNLLSDPGANSVGILHRRSASDSVTLLDGIVGSFLDLNPQNDDKNLDGH 104
LDN + P G++ R+ D V + D I+G F D PQ+ GH
Sbjct: 1221 LDNAFTPPCQRMGGMVSFRTFEDFVRIFDEIMGCFCDSPPQSPTFPESGH 1270
>sp|Q09771|ATF31_SCHPO Transcription factor atf31 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=atf31 PE=3 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 164 DLNGDIHT--LTGEHNAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADL 216
D +GD +T LTG + K RQ Q+ R++K +Y+ L+ V Y+ + +L
Sbjct: 109 DDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKEL 163
>sp|D0N761|GATB_PHYIT Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial
OS=Phytophthora infestans (strain T30-4) GN=PITG_07062
PE=3 SV=1
Length = 574
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 126 NLTFAGNAIVSAISESALEN------------HLLQYVDESLCIS----GVIPSDLN--- 166
+L AG A++ + E L + HLL+++D +C G + DLN
Sbjct: 212 DLNRAGTALLEIVMEPDLRSPVEAGQVMRQLQHLLRHLD--VCDGNMEEGSMRCDLNVSV 269
Query: 167 --------GDIHTLTGEHNAETKMTKRQFGQRSRVRKLQYIAELERTVEY 208
D+ +L HNA T T FG+R V+ + I + R EY
Sbjct: 270 RPTNLGAEADVESL---HNALTARTAAPFGERVEVKNMNSIRNMMRAAEY 316
>sp|A2XDD6|HOX13_ORYSI Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica
GN=HOX13 PE=2 SV=2
Length = 312
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 174 GEHNAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVA--LLLQ-QHVSL 230
G H A++ G++ R L+ + LER+ + L D AR+A L LQ + V++
Sbjct: 56 GGHAAQSPSPSCGLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAV 115
Query: 231 SMENSKLKQKIARVQKEKLIMEGQY 255
+N + + K +++++ + Q+
Sbjct: 116 WFQNRRARWKTKQLERDFAALRAQH 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,649,874
Number of Sequences: 539616
Number of extensions: 4373308
Number of successful extensions: 11846
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 11767
Number of HSP's gapped (non-prelim): 138
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)