Query 021792
Match_columns 307
No_of_seqs 146 out of 199
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.0 2.9E-09 6.3E-14 79.9 7.6 56 179-234 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 98.9 1.2E-08 2.6E-13 76.4 8.2 55 180-234 8-63 (64)
3 PF07716 bZIP_2: Basic region 98.4 1.2E-06 2.5E-11 64.0 7.4 41 185-225 13-53 (54)
4 KOG4005 Transcription factor X 98.0 6.1E-05 1.3E-09 70.9 10.5 70 178-247 70-140 (292)
5 KOG0837 Transcriptional activa 97.5 0.00033 7.1E-09 66.6 7.2 46 180-225 209-255 (279)
6 KOG4343 bZIP transcription fac 97.3 0.00041 8.9E-09 71.5 6.5 62 177-238 274-343 (655)
7 KOG0709 CREB/ATF family transc 97.2 0.00068 1.5E-08 68.8 5.9 78 178-262 248-333 (472)
8 PF06156 DUF972: Protein of un 96.9 0.003 6.5E-08 52.7 6.9 75 197-271 8-84 (107)
9 PRK13169 DNA replication intia 96.8 0.0043 9.3E-08 52.2 6.9 73 198-271 9-81 (110)
10 PF14197 Cep57_CLD_2: Centroso 96.6 0.018 4E-07 44.6 8.5 61 208-268 2-62 (69)
11 PF03131 bZIP_Maf: bZIP Maf tr 96.4 0.00019 4E-09 57.7 -3.6 53 185-237 39-91 (92)
12 PF06005 DUF904: Protein of un 96.4 0.075 1.6E-06 41.6 10.9 66 197-265 4-69 (72)
13 PF11559 ADIP: Afadin- and alp 96.0 0.14 3E-06 44.0 11.8 79 192-270 47-125 (151)
14 PF14197 Cep57_CLD_2: Centroso 95.8 0.15 3.2E-06 39.6 9.8 66 201-266 2-67 (69)
15 COG4467 Regulator of replicati 95.8 0.029 6.3E-07 47.4 6.2 46 198-243 9-54 (114)
16 PRK10884 SH3 domain-containing 95.5 0.19 4.1E-06 46.3 11.0 64 207-270 114-177 (206)
17 KOG3584 cAMP response element 95.0 0.061 1.3E-06 52.4 6.5 41 185-225 300-340 (348)
18 PF14662 CCDC155: Coiled-coil 94.8 0.22 4.8E-06 45.8 9.3 71 199-269 97-188 (193)
19 COG3074 Uncharacterized protei 94.8 0.51 1.1E-05 37.3 9.9 67 198-271 5-75 (79)
20 PF14662 CCDC155: Coiled-coil 94.6 0.25 5.4E-06 45.4 9.2 71 197-271 8-78 (193)
21 KOG4571 Activating transcripti 94.3 0.31 6.8E-06 47.3 9.6 46 175-220 220-271 (294)
22 PF12325 TMF_TATA_bd: TATA ele 94.3 0.77 1.7E-05 39.2 10.8 70 201-270 27-113 (120)
23 PF07989 Microtub_assoc: Micro 94.2 0.6 1.3E-05 36.7 9.2 63 199-261 2-72 (75)
24 COG2433 Uncharacterized conser 93.8 0.37 8E-06 51.0 9.6 74 199-272 424-514 (652)
25 PF12711 Kinesin-relat_1: Kine 93.8 0.86 1.9E-05 37.0 9.7 59 208-268 21-85 (86)
26 PRK15422 septal ring assembly 93.6 1.2 2.6E-05 35.8 9.9 67 198-271 5-75 (79)
27 PF05837 CENP-H: Centromere pr 93.2 0.36 7.8E-06 39.9 6.9 62 205-267 4-65 (106)
28 PF10146 zf-C4H2: Zinc finger- 93.2 1.5 3.2E-05 41.2 11.7 79 193-271 28-107 (230)
29 PF10224 DUF2205: Predicted co 93.0 0.55 1.2E-05 37.6 7.4 49 200-248 19-67 (80)
30 COG1579 Zn-ribbon protein, pos 92.7 3 6.5E-05 39.6 13.0 65 185-249 40-113 (239)
31 PF04102 SlyX: SlyX; InterPro 92.4 0.45 9.9E-06 36.5 5.9 51 197-247 4-54 (69)
32 PF04111 APG6: Autophagy prote 92.3 2.5 5.4E-05 41.2 12.3 83 189-271 56-138 (314)
33 PRK13729 conjugal transfer pil 92.2 0.51 1.1E-05 48.6 7.8 55 188-242 66-121 (475)
34 PF06005 DUF904: Protein of un 92.2 0.8 1.7E-05 35.8 7.2 31 208-238 8-38 (72)
35 PF08614 ATG16: Autophagy prot 92.1 0.59 1.3E-05 42.0 7.3 61 198-258 117-177 (194)
36 TIGR00219 mreC rod shape-deter 91.9 1.1 2.4E-05 42.9 9.2 45 226-273 67-111 (283)
37 PRK02119 hypothetical protein; 91.8 0.75 1.6E-05 35.9 6.6 46 198-243 10-55 (73)
38 PRK00295 hypothetical protein; 91.5 0.98 2.1E-05 34.8 7.0 46 199-244 7-52 (68)
39 PF05700 BCAS2: Breast carcino 91.5 2.7 5.9E-05 38.7 11.1 76 196-271 135-214 (221)
40 PRK04325 hypothetical protein; 91.3 0.9 2E-05 35.5 6.6 45 199-243 11-55 (74)
41 PF05911 DUF869: Plant protein 91.2 2.6 5.5E-05 46.0 12.1 74 197-271 134-208 (769)
42 PF11559 ADIP: Afadin- and alp 91.2 8.7 0.00019 32.9 13.2 86 185-270 54-150 (151)
43 PRK10884 SH3 domain-containing 91.1 1.8 3.8E-05 40.0 9.5 69 197-265 118-186 (206)
44 PRK11637 AmiB activator; Provi 91.1 3.5 7.6E-05 41.1 12.3 84 187-270 51-135 (428)
45 PRK00736 hypothetical protein; 90.9 1.3 2.8E-05 34.1 7.0 46 198-243 6-51 (68)
46 PF09730 BicD: Microtubule-ass 90.8 2.3 5.1E-05 46.0 11.3 50 199-248 71-120 (717)
47 TIGR03752 conj_TIGR03752 integ 90.8 1.2 2.6E-05 45.9 8.8 9 292-300 171-179 (472)
48 TIGR02449 conserved hypothetic 90.6 1.4 3.1E-05 34.0 7.0 45 200-244 10-54 (65)
49 KOG3119 Basic region leucine z 90.5 0.89 1.9E-05 43.3 7.1 39 185-223 203-241 (269)
50 PRK02793 phi X174 lysis protei 90.5 1.4 3E-05 34.3 6.9 47 197-243 8-54 (72)
51 PRK09039 hypothetical protein; 90.4 3.5 7.5E-05 40.6 11.3 72 198-271 131-209 (343)
52 TIGR02894 DNA_bind_RsfA transc 90.4 2.4 5.3E-05 38.1 9.3 58 205-269 98-155 (161)
53 PF10186 Atg14: UV radiation r 90.2 7 0.00015 36.0 12.6 52 191-242 57-108 (302)
54 PRK09039 hypothetical protein; 90.1 5.1 0.00011 39.5 12.2 64 200-263 119-182 (343)
55 TIGR03495 phage_LysB phage lys 90.0 5 0.00011 35.1 10.7 73 199-271 28-100 (135)
56 PRK00846 hypothetical protein; 89.8 1.8 3.8E-05 34.5 7.1 49 197-245 13-61 (77)
57 PF12325 TMF_TATA_bd: TATA ele 89.7 7.9 0.00017 33.1 11.5 76 196-271 15-93 (120)
58 KOG4807 F-actin binding protei 89.5 5.3 0.00011 41.0 11.8 77 195-271 391-492 (593)
59 COG2433 Uncharacterized conser 89.4 4.8 0.00011 42.9 11.9 26 198-223 437-462 (652)
60 PRK04406 hypothetical protein; 89.2 1.9 4.2E-05 33.9 6.9 34 198-231 12-45 (75)
61 KOG1103 Predicted coiled-coil 89.0 1.5 3.3E-05 44.2 7.6 73 178-250 217-291 (561)
62 KOG0982 Centrosomal protein Nu 88.8 4.7 0.0001 41.5 11.0 74 198-271 298-392 (502)
63 PF10805 DUF2730: Protein of u 88.5 4.4 9.6E-05 33.5 9.0 66 185-250 29-97 (106)
64 PF08614 ATG16: Autophagy prot 88.5 9.4 0.0002 34.3 11.8 46 196-241 136-181 (194)
65 PF00038 Filament: Intermediat 88.5 7.6 0.00017 36.6 11.7 73 199-271 70-142 (312)
66 PRK13922 rod shape-determining 88.3 5.9 0.00013 37.1 10.8 46 223-272 67-112 (276)
67 PF07106 TBPIP: Tat binding pr 88.3 2 4.2E-05 37.6 7.1 73 196-268 85-160 (169)
68 PRK11637 AmiB activator; Provi 88.2 13 0.00028 37.1 13.8 68 201-268 58-125 (428)
69 PF15070 GOLGA2L5: Putative go 88.2 5.9 0.00013 42.2 11.8 75 194-269 119-218 (617)
70 PF04728 LPP: Lipoprotein leuc 88.0 3.9 8.5E-05 30.9 7.5 47 198-244 4-50 (56)
71 KOG1899 LAR transmembrane tyro 88.0 4.5 9.7E-05 43.5 10.5 79 185-267 133-219 (861)
72 PF04156 IncA: IncA protein; 88.0 8.6 0.00019 33.8 11.0 23 198-220 96-118 (191)
73 PF15058 Speriolin_N: Sperioli 87.5 0.75 1.6E-05 42.5 4.1 42 223-264 10-51 (200)
74 PF08317 Spc7: Spc7 kinetochor 87.5 4.3 9.3E-05 39.4 9.6 18 254-271 277-294 (325)
75 PF07798 DUF1640: Protein of u 87.4 4.2 9.1E-05 36.1 8.8 47 200-246 47-94 (177)
76 PF10186 Atg14: UV radiation r 87.2 8.4 0.00018 35.4 11.0 44 204-247 56-99 (302)
77 PF12329 TMF_DNA_bd: TATA elem 86.8 13 0.00027 29.1 10.1 65 199-270 7-71 (74)
78 KOG0995 Centromere-associated 86.6 11 0.00024 39.9 12.5 58 185-242 267-325 (581)
79 PF03962 Mnd1: Mnd1 family; I 86.6 15 0.00033 33.3 12.0 74 198-271 70-153 (188)
80 KOG3863 bZIP transcription fac 86.5 1.8 3.9E-05 45.9 6.8 69 185-261 499-567 (604)
81 PF05377 FlaC_arch: Flagella a 86.5 3 6.6E-05 31.4 6.2 33 230-262 19-51 (55)
82 PF06216 RTBV_P46: Rice tungro 86.1 3.2 7E-05 40.3 7.7 57 191-247 54-114 (389)
83 PF07888 CALCOCO1: Calcium bin 85.9 13 0.00028 39.4 12.5 27 196-222 156-182 (546)
84 KOG0239 Kinesin (KAR3 subfamil 85.5 8.2 0.00018 41.6 11.2 72 199-270 243-317 (670)
85 PF04880 NUDE_C: NUDE protein, 85.4 1.4 3E-05 39.7 4.7 54 199-256 2-55 (166)
86 PF04849 HAP1_N: HAP1 N-termin 85.4 6.2 0.00013 38.8 9.4 64 201-271 221-287 (306)
87 PF15294 Leu_zip: Leucine zipp 85.1 7.7 0.00017 37.7 9.8 52 220-271 127-178 (278)
88 TIGR02449 conserved hypothetic 84.9 7.5 0.00016 30.1 7.8 53 216-268 5-61 (65)
89 PF00038 Filament: Intermediat 84.8 26 0.00057 32.9 13.2 62 206-267 211-276 (312)
90 PF04111 APG6: Autophagy prote 84.7 11 0.00024 36.7 10.9 51 197-247 43-93 (314)
91 COG3883 Uncharacterized protei 84.7 15 0.00032 35.5 11.5 80 192-271 33-113 (265)
92 PF07106 TBPIP: Tat binding pr 84.7 15 0.00033 32.1 10.8 44 199-247 81-124 (169)
93 PF02403 Seryl_tRNA_N: Seryl-t 84.5 20 0.00042 28.9 10.7 69 196-264 28-99 (108)
94 PF14817 HAUS5: HAUS augmin-li 84.4 13 0.00029 39.8 12.1 79 191-269 73-151 (632)
95 PF07888 CALCOCO1: Calcium bin 84.3 13 0.00028 39.3 11.7 15 70-84 31-45 (546)
96 PF15619 Lebercilin: Ciliary p 84.2 9.1 0.0002 35.0 9.5 71 197-270 118-188 (194)
97 PF10211 Ax_dynein_light: Axon 83.9 19 0.00042 32.6 11.4 37 199-235 122-158 (189)
98 COG3074 Uncharacterized protei 83.9 5.8 0.00013 31.5 6.9 42 199-240 20-61 (79)
99 PF13747 DUF4164: Domain of un 83.7 12 0.00027 30.2 9.0 58 188-245 23-80 (89)
100 PF08172 CASP_C: CASP C termin 83.2 9.5 0.00021 36.2 9.4 31 237-267 91-121 (248)
101 KOG4674 Uncharacterized conser 83.1 5 0.00011 47.5 8.8 77 191-267 1237-1321(1822)
102 PF06428 Sec2p: GDP/GTP exchan 83.1 1.1 2.3E-05 37.2 2.7 73 197-271 8-83 (100)
103 PF09304 Cortex-I_coil: Cortex 83.1 26 0.00055 29.8 10.8 37 201-237 13-49 (107)
104 PF05266 DUF724: Protein of un 82.9 21 0.00045 32.6 11.2 36 186-221 99-134 (190)
105 PF09304 Cortex-I_coil: Cortex 82.7 17 0.00037 30.8 9.6 24 200-223 40-63 (107)
106 PF04156 IncA: IncA protein; 82.5 20 0.00044 31.5 10.8 50 199-248 90-139 (191)
107 PRK15422 septal ring assembly 82.3 12 0.00025 30.2 8.1 42 199-240 20-61 (79)
108 KOG3650 Predicted coiled-coil 82.1 5.1 0.00011 33.9 6.3 44 203-246 62-105 (120)
109 PF05667 DUF812: Protein of un 82.0 16 0.00035 38.8 11.5 60 193-252 324-383 (594)
110 PF12329 TMF_DNA_bd: TATA elem 81.9 20 0.00043 28.0 9.3 52 197-248 12-63 (74)
111 PRK10803 tol-pal system protei 81.9 6.9 0.00015 37.1 8.0 56 184-244 46-101 (263)
112 PF05103 DivIVA: DivIVA protei 81.8 0.96 2.1E-05 37.3 2.0 46 197-242 25-70 (131)
113 KOG1265 Phospholipase C [Lipid 81.5 27 0.00059 39.3 13.1 69 180-248 1028-1105(1189)
114 PF00769 ERM: Ezrin/radixin/mo 81.5 12 0.00025 35.3 9.3 68 201-268 51-118 (246)
115 PF13870 DUF4201: Domain of un 81.4 8.3 0.00018 33.9 7.9 70 199-268 93-167 (177)
116 KOG0946 ER-Golgi vesicle-tethe 81.3 9.8 0.00021 42.0 9.7 67 197-270 650-716 (970)
117 KOG4005 Transcription factor X 81.0 47 0.001 32.2 13.0 55 199-253 99-153 (292)
118 PF12808 Mto2_bdg: Micro-tubul 81.0 4.8 0.0001 29.9 5.2 43 194-243 1-47 (52)
119 TIGR02894 DNA_bind_RsfA transc 81.0 10 0.00022 34.2 8.2 35 229-263 101-135 (161)
120 PF08317 Spc7: Spc7 kinetochor 80.9 37 0.00081 32.9 12.9 8 55-62 16-23 (325)
121 TIGR02209 ftsL_broad cell divi 80.7 8.3 0.00018 29.6 6.8 42 209-250 22-63 (85)
122 PF06156 DUF972: Protein of un 80.7 7.5 0.00016 32.5 6.9 40 203-242 7-46 (107)
123 PF05529 Bap31: B-cell recepto 80.6 15 0.00032 32.7 9.3 39 230-268 152-190 (192)
124 PF15035 Rootletin: Ciliary ro 80.6 16 0.00036 33.1 9.6 58 196-253 66-123 (182)
125 KOG4643 Uncharacterized coiled 80.4 8.2 0.00018 43.5 8.9 69 199-267 303-371 (1195)
126 COG4942 Membrane-bound metallo 80.1 29 0.00063 35.7 12.1 68 181-248 38-110 (420)
127 PF09755 DUF2046: Uncharacteri 79.9 12 0.00025 37.0 8.9 16 254-269 230-245 (310)
128 PF05557 MAD: Mitotic checkpoi 79.9 13 0.00028 39.8 10.1 74 198-271 511-631 (722)
129 PF09726 Macoilin: Transmembra 79.8 30 0.00064 37.6 12.7 77 192-268 483-581 (697)
130 PF10473 CENP-F_leu_zip: Leuci 79.7 42 0.00092 29.5 12.9 61 185-245 40-100 (140)
131 KOG0977 Nuclear envelope prote 79.5 21 0.00045 37.8 11.2 48 199-246 143-190 (546)
132 PHA02562 46 endonuclease subun 79.5 39 0.00084 34.3 12.9 27 203-229 364-390 (562)
133 TIGR02231 conserved hypothetic 79.4 23 0.00051 36.3 11.5 75 197-271 78-170 (525)
134 KOG0977 Nuclear envelope prote 79.4 27 0.00059 36.9 12.0 54 218-271 141-194 (546)
135 PF00261 Tropomyosin: Tropomyo 79.4 26 0.00055 32.5 10.7 47 200-246 137-183 (237)
136 PF12777 MT: Microtubule-bindi 79.4 9.5 0.00021 37.3 8.3 81 177-264 215-295 (344)
137 PF12718 Tropomyosin_1: Tropom 79.3 16 0.00034 31.8 8.7 45 199-243 16-60 (143)
138 COG4026 Uncharacterized protei 78.9 13 0.00029 35.5 8.7 65 200-271 138-202 (290)
139 PRK00888 ftsB cell division pr 78.9 7.3 0.00016 32.3 6.3 32 215-246 31-62 (105)
140 PF15066 CAGE1: Cancer-associa 78.7 13 0.00028 38.7 9.2 71 201-271 342-429 (527)
141 PF15294 Leu_zip: Leucine zipp 78.6 6.1 0.00013 38.4 6.6 45 202-246 130-174 (278)
142 PF11932 DUF3450: Protein of u 78.6 54 0.0012 30.5 12.7 46 200-245 52-97 (251)
143 PF10481 CENP-F_N: Cenp-F N-te 78.5 17 0.00038 35.5 9.5 59 209-267 58-123 (307)
144 PF05483 SCP-1: Synaptonemal c 78.3 19 0.00041 39.2 10.5 76 195-270 606-685 (786)
145 KOG1029 Endocytic adaptor prot 78.2 20 0.00044 39.7 10.8 14 254-267 487-500 (1118)
146 PF02841 GBP_C: Guanylate-bind 78.1 45 0.00098 31.8 12.3 22 245-266 273-297 (297)
147 PF01166 TSC22: TSC-22/dip/bun 77.9 3.4 7.3E-05 31.6 3.6 29 212-240 15-43 (59)
148 PHA02562 46 endonuclease subun 77.8 22 0.00048 36.0 10.7 69 197-265 174-246 (562)
149 KOG0243 Kinesin-like protein [ 77.8 31 0.00067 39.1 12.4 67 202-268 446-512 (1041)
150 PF09755 DUF2046: Uncharacteri 77.6 24 0.00052 34.9 10.4 49 200-248 23-71 (310)
151 PRK02119 hypothetical protein; 77.5 13 0.00027 29.1 6.9 27 197-223 2-28 (73)
152 COG1579 Zn-ribbon protein, pos 77.4 37 0.00079 32.4 11.2 76 194-269 86-187 (239)
153 PRK13922 rod shape-determining 77.4 13 0.00028 34.8 8.2 19 224-242 75-93 (276)
154 KOG4196 bZIP transcription fac 77.4 20 0.00043 31.5 8.6 33 185-217 62-94 (135)
155 PF00170 bZIP_1: bZIP transcri 77.2 10 0.00022 28.1 6.1 15 231-245 46-60 (64)
156 KOG2010 Double stranded RNA bi 77.2 14 0.0003 37.1 8.6 35 209-243 152-186 (405)
157 PF10211 Ax_dynein_light: Axon 77.1 43 0.00093 30.4 11.2 35 207-241 123-157 (189)
158 PF14915 CCDC144C: CCDC144C pr 77.1 53 0.0011 32.5 12.4 75 178-252 171-248 (305)
159 PF09726 Macoilin: Transmembra 77.1 19 0.00041 39.0 10.3 54 178-237 425-479 (697)
160 KOG4673 Transcription factor T 76.9 24 0.00052 38.7 10.8 29 196-224 408-436 (961)
161 COG2919 Septum formation initi 76.4 20 0.00043 30.1 8.3 48 211-261 50-97 (117)
162 COG2900 SlyX Uncharacterized p 76.2 12 0.00027 29.6 6.4 44 198-241 9-52 (72)
163 PRK00888 ftsB cell division pr 76.1 8.4 0.00018 31.9 5.9 34 192-225 29-62 (105)
164 PF12711 Kinesin-relat_1: Kine 76.0 8.5 0.00018 31.3 5.7 60 204-270 3-68 (86)
165 PF12718 Tropomyosin_1: Tropom 75.9 34 0.00074 29.7 9.9 59 194-252 32-93 (143)
166 PF08703 PLC-beta_C: PLC-beta 75.9 65 0.0014 29.6 12.6 80 185-265 15-105 (185)
167 KOG0250 DNA repair protein RAD 75.8 34 0.00073 38.9 12.0 62 207-268 390-451 (1074)
168 PF02403 Seryl_tRNA_N: Seryl-t 75.7 21 0.00045 28.8 8.0 55 200-254 39-96 (108)
169 PF04977 DivIC: Septum formati 75.6 10 0.00023 28.3 5.9 29 216-244 22-50 (80)
170 PF04849 HAP1_N: HAP1 N-termin 75.6 22 0.00047 35.1 9.4 64 196-266 240-303 (306)
171 PF15290 Syntaphilin: Golgi-lo 75.0 19 0.00041 35.3 8.7 28 199-226 77-104 (305)
172 TIGR02977 phageshock_pspA phag 74.8 67 0.0015 29.4 12.0 62 193-254 95-156 (219)
173 COG4372 Uncharacterized protei 74.7 83 0.0018 32.5 13.4 87 185-271 125-228 (499)
174 smart00338 BRLZ basic region l 74.5 27 0.00059 25.8 7.8 36 204-239 26-61 (65)
175 KOG4643 Uncharacterized coiled 74.4 23 0.0005 40.1 10.2 74 198-271 265-340 (1195)
176 PRK14872 rod shape-determining 74.2 15 0.00033 36.5 8.2 62 206-271 33-99 (337)
177 TIGR01005 eps_transp_fam exopo 73.9 37 0.0008 36.3 11.5 95 177-271 163-269 (754)
178 PF10174 Cast: RIM-binding pro 73.8 33 0.0007 37.8 11.1 73 194-266 298-377 (775)
179 PF12761 End3: Actin cytoskele 73.7 47 0.001 30.8 10.6 79 177-267 95-195 (195)
180 KOG4343 bZIP transcription fac 73.4 4 8.7E-05 43.1 4.1 34 214-247 305-338 (655)
181 PF10473 CENP-F_leu_zip: Leuci 73.4 36 0.00077 29.9 9.4 45 209-253 57-101 (140)
182 PF07407 Seadorna_VP6: Seadorn 73.3 11 0.00024 37.9 6.8 25 223-247 37-61 (420)
183 PRK04406 hypothetical protein; 73.2 26 0.00057 27.5 7.7 25 199-223 6-30 (75)
184 PF05791 Bacillus_HBL: Bacillu 73.2 40 0.00087 30.2 10.0 78 189-269 102-179 (184)
185 PRK10698 phage shock protein P 73.1 43 0.00093 31.1 10.4 59 195-253 97-155 (222)
186 KOG2629 Peroxisomal membrane a 72.9 55 0.0012 32.3 11.4 80 200-299 132-215 (300)
187 PF13094 CENP-Q: CENP-Q, a CEN 72.9 34 0.00074 29.6 9.2 60 203-262 26-85 (160)
188 PF07851 TMPIT: TMPIT-like pro 72.7 43 0.00094 33.3 10.8 76 196-271 3-86 (330)
189 PF15619 Lebercilin: Ciliary p 72.7 68 0.0015 29.4 11.4 85 186-270 7-113 (194)
190 PF12709 Kinetocho_Slk19: Cent 72.5 27 0.00059 28.6 7.8 53 196-248 26-79 (87)
191 TIGR03752 conj_TIGR03752 integ 72.3 30 0.00064 36.1 9.9 18 229-246 106-123 (472)
192 PRK13169 DNA replication intia 72.2 18 0.00038 30.7 6.9 36 204-239 8-43 (110)
193 PF13815 Dzip-like_N: Iguana/D 72.1 20 0.00044 29.9 7.3 39 208-246 77-115 (118)
194 TIGR00219 mreC rod shape-deter 72.0 7.5 0.00016 37.3 5.3 37 205-241 67-107 (283)
195 PF06810 Phage_GP20: Phage min 71.7 46 0.001 29.4 9.8 17 233-249 52-68 (155)
196 KOG2129 Uncharacterized conser 71.6 12 0.00025 38.7 6.7 66 200-267 46-114 (552)
197 PF05377 FlaC_arch: Flagella a 71.6 16 0.00035 27.5 5.9 38 199-243 2-39 (55)
198 PF04012 PspA_IM30: PspA/IM30 71.5 69 0.0015 28.9 11.2 60 195-254 96-155 (221)
199 PF02183 HALZ: Homeobox associ 71.5 8.7 0.00019 27.5 4.2 14 229-242 23-36 (45)
200 PF08232 Striatin: Striatin fa 71.3 35 0.00076 29.4 8.8 45 201-245 15-59 (134)
201 PRK14127 cell division protein 71.2 21 0.00045 30.2 7.2 17 232-248 85-101 (109)
202 PF05911 DUF869: Plant protein 71.2 29 0.00063 38.1 10.1 52 197-248 92-150 (769)
203 PF10168 Nup88: Nuclear pore c 71.0 28 0.00061 37.8 9.8 6 54-59 396-401 (717)
204 KOG0999 Microtubule-associated 70.7 18 0.00039 38.7 8.0 79 202-280 6-84 (772)
205 KOG0976 Rho/Rac1-interacting s 70.2 43 0.00094 37.5 10.9 61 201-261 89-149 (1265)
206 PRK05431 seryl-tRNA synthetase 70.2 75 0.0016 32.2 12.2 73 196-268 27-102 (425)
207 COG1792 MreC Cell shape-determ 70.1 28 0.0006 33.5 8.7 44 226-273 67-110 (284)
208 PF04999 FtsL: Cell division p 69.9 21 0.00045 28.3 6.6 44 209-252 33-76 (97)
209 PF09730 BicD: Microtubule-ass 69.8 32 0.00068 37.6 9.9 67 205-271 367-437 (717)
210 KOG4360 Uncharacterized coiled 69.7 32 0.00068 36.5 9.4 49 200-248 219-270 (596)
211 PF12709 Kinetocho_Slk19: Cent 69.6 19 0.00041 29.5 6.3 46 192-237 37-82 (87)
212 PRK02224 chromosome segregatio 69.5 40 0.00087 36.4 10.7 12 206-217 574-585 (880)
213 KOG0971 Microtubule-associated 69.5 62 0.0013 36.7 11.9 84 185-268 398-505 (1243)
214 PF07716 bZIP_2: Basic region 68.8 12 0.00026 27.0 4.7 25 222-246 29-53 (54)
215 PF00261 Tropomyosin: Tropomyo 68.7 69 0.0015 29.7 10.7 11 253-263 204-214 (237)
216 COG1196 Smc Chromosome segrega 68.5 51 0.0011 37.4 11.6 43 206-248 392-434 (1163)
217 PF08581 Tup_N: Tup N-terminal 68.4 59 0.0013 25.9 10.6 64 204-270 11-74 (79)
218 KOG4797 Transcriptional regula 68.3 9.1 0.0002 32.7 4.4 40 210-250 66-105 (123)
219 PF08232 Striatin: Striatin fa 68.2 40 0.00087 29.0 8.5 56 216-271 9-64 (134)
220 TIGR01843 type_I_hlyD type I s 68.0 1.2E+02 0.0025 29.2 13.1 19 202-220 156-174 (423)
221 PF10146 zf-C4H2: Zinc finger- 67.8 1.1E+02 0.0024 28.8 12.0 32 215-246 36-67 (230)
222 KOG4571 Activating transcripti 67.8 16 0.00034 35.9 6.4 38 220-271 250-287 (294)
223 KOG4360 Uncharacterized coiled 67.7 64 0.0014 34.3 11.1 61 192-252 193-260 (596)
224 PF04871 Uso1_p115_C: Uso1 / p 67.6 74 0.0016 27.5 10.0 41 197-237 27-67 (136)
225 PF15030 DUF4527: Protein of u 67.6 78 0.0017 30.7 10.9 51 214-264 54-104 (277)
226 smart00787 Spc7 Spc7 kinetocho 67.4 64 0.0014 31.6 10.7 7 55-61 12-18 (312)
227 PF07889 DUF1664: Protein of u 67.4 45 0.00098 28.8 8.6 58 209-269 41-98 (126)
228 KOG0933 Structural maintenance 67.3 53 0.0012 37.4 11.0 70 200-269 790-859 (1174)
229 KOG0982 Centrosomal protein Nu 67.2 21 0.00046 37.0 7.5 34 238-271 291-329 (502)
230 PF14645 Chibby: Chibby family 67.1 15 0.00032 31.2 5.5 31 203-233 77-107 (116)
231 PF10234 Cluap1: Clusterin-ass 66.8 56 0.0012 31.6 10.0 74 195-271 156-243 (267)
232 PF12795 MscS_porin: Mechanose 66.8 55 0.0012 30.2 9.7 66 203-268 149-214 (240)
233 COG4467 Regulator of replicati 66.6 25 0.00055 30.0 6.7 46 201-246 5-50 (114)
234 PF05812 Herpes_BLRF2: Herpesv 66.5 7.2 0.00016 33.5 3.5 41 197-237 3-48 (118)
235 PF06818 Fez1: Fez1; InterPro 66.5 63 0.0014 30.2 9.9 15 257-271 91-105 (202)
236 PF08172 CASP_C: CASP C termin 66.5 15 0.00033 34.8 6.1 49 185-242 83-131 (248)
237 PF00769 ERM: Ezrin/radixin/mo 66.2 82 0.0018 29.7 10.8 83 189-271 25-114 (246)
238 PF14988 DUF4515: Domain of un 66.0 1.1E+02 0.0024 28.2 11.5 23 228-250 57-79 (206)
239 KOG3119 Basic region leucine z 65.9 27 0.00058 33.4 7.6 41 235-275 218-258 (269)
240 PF15070 GOLGA2L5: Putative go 65.9 83 0.0018 33.8 11.9 16 197-212 50-65 (617)
241 KOG0161 Myosin class II heavy 65.8 52 0.0011 39.8 11.2 77 195-271 1088-1171(1930)
242 PLN02678 seryl-tRNA synthetase 65.8 82 0.0018 32.5 11.5 73 196-268 32-107 (448)
243 PF03980 Nnf1: Nnf1 ; InterPr 65.8 11 0.00025 30.6 4.5 31 194-224 77-107 (109)
244 KOG0995 Centromere-associated 65.7 71 0.0015 34.1 11.2 77 193-269 248-324 (581)
245 PF04102 SlyX: SlyX; InterPro 65.7 34 0.00074 26.1 6.8 24 202-225 2-25 (69)
246 PF08606 Prp19: Prp19/Pso4-lik 65.6 39 0.00085 26.7 7.1 50 213-262 3-52 (70)
247 KOG2129 Uncharacterized conser 65.6 55 0.0012 34.1 10.0 16 254-269 254-269 (552)
248 PRK04863 mukB cell division pr 65.0 88 0.0019 37.0 12.7 70 200-269 358-427 (1486)
249 PF11932 DUF3450: Protein of u 65.0 1.2E+02 0.0026 28.2 12.5 48 199-246 44-91 (251)
250 PRK02793 phi X174 lysis protei 65.0 47 0.001 25.8 7.5 24 200-223 4-27 (72)
251 KOG4403 Cell surface glycoprot 64.9 53 0.0011 34.3 9.8 76 196-271 241-320 (575)
252 KOG0161 Myosin class II heavy 64.7 56 0.0012 39.5 11.2 81 187-267 1628-1709(1930)
253 PF04642 DUF601: Protein of un 64.6 21 0.00047 34.7 6.6 59 198-256 218-285 (311)
254 PF14988 DUF4515: Domain of un 64.5 1E+02 0.0022 28.5 10.9 48 220-267 151-198 (206)
255 PRK03918 chromosome segregatio 64.5 84 0.0018 33.8 11.8 46 200-245 189-234 (880)
256 PF03961 DUF342: Protein of un 64.4 58 0.0013 32.9 10.1 27 200-226 337-363 (451)
257 PHA03162 hypothetical protein; 64.1 7.1 0.00015 34.2 3.0 27 195-221 11-37 (135)
258 TIGR02132 phaR_Bmeg polyhydrox 63.5 72 0.0016 29.5 9.5 51 198-248 80-130 (189)
259 KOG2391 Vacuolar sorting prote 63.3 57 0.0012 32.9 9.5 68 185-264 211-278 (365)
260 PHA03155 hypothetical protein; 63.3 7.7 0.00017 33.2 3.0 24 199-222 10-33 (115)
261 COG1196 Smc Chromosome segrega 63.2 1.1E+02 0.0024 34.9 12.9 9 199-207 830-838 (1163)
262 KOG2264 Exostosin EXT1L [Signa 63.2 50 0.0011 35.7 9.5 46 198-243 94-139 (907)
263 PF05266 DUF724: Protein of un 63.1 1.2E+02 0.0027 27.7 12.7 12 254-265 153-164 (190)
264 PF04340 DUF484: Protein of un 63.0 31 0.00068 31.4 7.2 70 198-271 41-110 (225)
265 PF15254 CCDC14: Coiled-coil d 62.9 76 0.0016 35.2 11.0 29 198-226 442-470 (861)
266 PF09728 Taxilin: Myosin-like 62.9 25 0.00055 34.2 7.0 52 207-258 110-161 (309)
267 PRK13729 conjugal transfer pil 62.9 27 0.00058 36.5 7.4 50 211-267 76-125 (475)
268 PF10212 TTKRSYEDQ: Predicted 62.9 79 0.0017 33.4 10.8 65 203-267 433-515 (518)
269 PF07200 Mod_r: Modifier of ru 62.7 47 0.001 28.2 7.9 69 196-265 20-88 (150)
270 KOG2189 Vacuolar H+-ATPase V0 62.6 56 0.0012 36.2 10.0 67 187-253 46-134 (829)
271 KOG0999 Microtubule-associated 62.4 29 0.00064 37.2 7.6 46 196-245 169-214 (772)
272 TIGR00414 serS seryl-tRNA synt 62.4 91 0.002 31.5 11.0 68 197-264 30-101 (418)
273 KOG2264 Exostosin EXT1L [Signa 62.1 27 0.00058 37.7 7.3 56 214-269 89-144 (907)
274 PF13166 AAA_13: AAA domain 61.9 72 0.0016 33.5 10.6 69 197-265 403-471 (712)
275 TIGR03495 phage_LysB phage lys 61.9 68 0.0015 28.1 8.7 51 212-262 20-70 (135)
276 PF13935 Ead_Ea22: Ead/Ea22-li 61.9 34 0.00073 29.5 6.8 12 194-205 78-89 (139)
277 TIGR03185 DNA_S_dndD DNA sulfu 61.7 76 0.0016 33.6 10.7 44 198-241 422-465 (650)
278 KOG4370 Ral-GTPase effector RL 61.6 28 0.00062 36.1 7.2 57 215-271 410-466 (514)
279 smart00787 Spc7 Spc7 kinetocho 61.3 69 0.0015 31.4 9.6 17 255-271 273-289 (312)
280 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.3 69 0.0015 27.1 8.6 26 225-250 98-123 (132)
281 TIGR00634 recN DNA repair prot 61.1 21 0.00045 37.1 6.4 23 235-257 212-234 (563)
282 PF13851 GAS: Growth-arrest sp 61.0 1.1E+02 0.0024 28.0 10.4 32 216-247 91-122 (201)
283 PF06810 Phage_GP20: Phage min 61.0 75 0.0016 28.0 9.0 62 198-259 28-92 (155)
284 PF02183 HALZ: Homeobox associ 60.8 29 0.00063 24.8 5.2 15 255-269 28-42 (45)
285 PF05622 HOOK: HOOK protein; 60.7 2.8 6.1E-05 44.7 0.0 39 188-227 317-355 (713)
286 KOG0288 WD40 repeat protein Ti 60.6 77 0.0017 32.8 10.0 23 249-271 86-108 (459)
287 KOG4286 Dystrophin-like protei 60.5 46 0.001 36.9 8.9 77 197-273 782-882 (966)
288 PF07989 Microtub_assoc: Micro 60.4 48 0.001 26.0 6.9 27 223-249 5-31 (75)
289 KOG1962 B-cell receptor-associ 60.3 48 0.001 31.3 8.0 17 253-269 193-209 (216)
290 PF10481 CENP-F_N: Cenp-F N-te 60.2 83 0.0018 31.0 9.7 60 205-271 61-134 (307)
291 PF06698 DUF1192: Protein of u 60.1 15 0.00031 28.0 3.7 25 199-223 23-47 (59)
292 PF05557 MAD: Mitotic checkpoi 60.0 61 0.0013 34.8 9.8 25 245-269 558-582 (722)
293 PLN02320 seryl-tRNA synthetase 59.9 1.3E+02 0.0028 31.6 11.8 91 175-265 64-163 (502)
294 PHA03161 hypothetical protein; 59.5 1.1E+02 0.0023 27.5 9.6 66 193-268 50-115 (150)
295 PF06548 Kinesin-related: Kine 59.4 56 0.0012 34.1 8.9 56 215-270 389-472 (488)
296 PF14916 CCDC92: Coiled-coil d 59.4 20 0.00044 27.4 4.4 15 257-271 25-39 (60)
297 PF14916 CCDC92: Coiled-coil d 59.0 19 0.00042 27.5 4.3 30 198-227 4-37 (60)
298 PRK10636 putative ABC transpor 59.0 80 0.0017 33.4 10.3 24 198-221 564-587 (638)
299 KOG0250 DNA repair protein RAD 58.9 1.4E+02 0.0031 34.2 12.5 78 194-271 686-773 (1074)
300 COG4238 Murein lipoprotein [Ce 58.8 62 0.0013 26.0 7.2 49 198-246 26-74 (78)
301 PF13805 Pil1: Eisosome compon 58.7 1.3E+02 0.0027 29.4 10.7 35 218-253 165-199 (271)
302 KOG4673 Transcription factor T 58.5 73 0.0016 35.1 9.8 69 203-271 865-950 (961)
303 KOG2391 Vacuolar sorting prote 58.4 93 0.002 31.4 10.0 49 193-241 228-276 (365)
304 cd07596 BAR_SNX The Bin/Amphip 58.2 1.1E+02 0.0025 26.4 9.7 64 192-265 112-182 (218)
305 PHA03011 hypothetical protein; 58.0 57 0.0012 27.7 7.3 56 215-270 61-116 (120)
306 PRK10803 tol-pal system protei 58.0 81 0.0017 29.9 9.3 51 199-249 42-92 (263)
307 PF14523 Syntaxin_2: Syntaxin- 57.9 90 0.002 24.5 10.0 48 197-244 10-59 (102)
308 TIGR00998 8a0101 efflux pump m 57.9 87 0.0019 29.5 9.5 24 200-223 97-120 (334)
309 KOG2273 Membrane coat complex 57.8 1.1E+02 0.0024 31.1 10.9 74 195-268 385-464 (503)
310 PF09744 Jnk-SapK_ap_N: JNK_SA 57.6 1.4E+02 0.0031 26.6 10.3 56 206-261 84-140 (158)
311 KOG3335 Predicted coiled-coil 57.5 27 0.00058 32.1 5.6 46 178-224 88-133 (181)
312 PRK15396 murein lipoprotein; P 57.4 65 0.0014 25.8 7.2 23 201-223 29-51 (78)
313 PRK00846 hypothetical protein; 57.3 73 0.0016 25.4 7.5 23 201-223 10-32 (77)
314 PRK11239 hypothetical protein; 57.3 17 0.00037 34.2 4.5 28 199-226 185-212 (215)
315 PRK09841 cryptic autophosphory 57.2 1.8E+02 0.004 31.3 12.8 51 177-227 236-297 (726)
316 TIGR03007 pepcterm_ChnLen poly 56.8 1.2E+02 0.0027 30.5 10.9 21 240-260 356-376 (498)
317 KOG0963 Transcription factor/C 56.8 1.8E+02 0.0039 31.5 12.3 64 208-271 232-310 (629)
318 KOG4196 bZIP transcription fac 56.6 1.4E+02 0.0031 26.3 9.9 66 198-271 48-113 (135)
319 COG5509 Uncharacterized small 56.5 18 0.00039 28.0 3.7 26 197-222 25-50 (65)
320 PF04977 DivIC: Septum formati 56.4 37 0.0008 25.3 5.5 30 194-223 21-50 (80)
321 PF08826 DMPK_coil: DMPK coile 56.4 88 0.0019 23.9 8.4 39 228-266 21-59 (61)
322 PF12507 HCMV_UL139: Human Cyt 56.3 38 0.00081 29.4 6.0 71 201-271 34-104 (121)
323 PF03962 Mnd1: Mnd1 family; I 56.2 1.1E+02 0.0024 27.7 9.5 59 185-244 71-129 (188)
324 KOG2077 JNK/SAPK-associated pr 56.1 60 0.0013 35.1 8.6 51 201-251 326-376 (832)
325 PF05483 SCP-1: Synaptonemal c 56.0 1.6E+02 0.0034 32.6 11.8 76 196-271 579-654 (786)
326 PF04859 DUF641: Plant protein 55.9 25 0.00054 30.6 5.0 43 199-241 89-131 (131)
327 PF05667 DUF812: Protein of un 55.8 86 0.0019 33.5 9.9 75 197-271 335-416 (594)
328 KOG4603 TBP-1 interacting prot 55.6 93 0.002 28.8 8.8 28 198-225 87-114 (201)
329 PRK12704 phosphodiesterase; Pr 55.5 2E+02 0.0043 30.2 12.4 83 179-265 65-147 (520)
330 PF14282 FlxA: FlxA-like prote 55.4 59 0.0013 26.8 7.0 56 197-262 19-74 (106)
331 PF04728 LPP: Lipoprotein leuc 55.2 48 0.001 25.1 5.8 29 204-232 3-31 (56)
332 smart00502 BBC B-Box C-termina 55.2 1E+02 0.0022 24.2 12.9 80 191-270 15-96 (127)
333 PRK12705 hypothetical protein; 55.0 2.6E+02 0.0056 29.5 13.1 31 200-230 91-121 (508)
334 TIGR00414 serS seryl-tRNA synt 54.8 78 0.0017 32.0 9.1 69 200-271 40-112 (418)
335 PRK11281 hypothetical protein; 54.7 1.7E+02 0.0036 33.8 12.4 62 203-264 191-252 (1113)
336 PF09325 Vps5: Vps5 C terminal 54.6 1.6E+02 0.0034 26.3 10.3 59 206-267 165-225 (236)
337 PF11180 DUF2968: Protein of u 54.3 1.9E+02 0.004 27.0 12.7 75 197-271 112-186 (192)
338 PRK00295 hypothetical protein; 54.2 86 0.0019 24.1 7.2 22 202-223 3-24 (68)
339 PRK14011 prefoldin subunit alp 54.1 60 0.0013 28.5 7.2 45 202-249 93-137 (144)
340 PF09738 DUF2051: Double stran 54.1 1.3E+02 0.0028 29.6 10.1 67 200-269 101-170 (302)
341 PF08647 BRE1: BRE1 E3 ubiquit 54.0 1.2E+02 0.0025 24.6 11.4 66 187-252 14-80 (96)
342 TIGR02209 ftsL_broad cell divi 53.7 42 0.00091 25.7 5.6 34 233-266 25-58 (85)
343 KOG0963 Transcription factor/C 53.7 78 0.0017 34.2 9.1 37 231-268 323-359 (629)
344 COG4026 Uncharacterized protei 53.7 1.6E+02 0.0034 28.5 10.2 57 192-248 151-207 (290)
345 TIGR02680 conserved hypothetic 53.5 1.3E+02 0.0028 35.1 11.6 41 197-237 742-782 (1353)
346 PLN03188 kinesin-12 family pro 53.3 63 0.0014 37.6 8.8 55 215-269 1159-1241(1320)
347 PF07412 Geminin: Geminin; In 52.9 42 0.00092 31.3 6.3 28 212-239 126-153 (200)
348 TIGR01069 mutS2 MutS2 family p 52.5 1.3E+02 0.0028 33.1 10.8 33 198-230 516-548 (771)
349 PF09744 Jnk-SapK_ap_N: JNK_SA 52.4 46 0.00099 29.7 6.2 46 200-245 92-137 (158)
350 PF10168 Nup88: Nuclear pore c 52.3 1.3E+02 0.0029 32.8 10.8 44 200-243 561-604 (717)
351 KOG0243 Kinesin-like protein [ 52.2 1.8E+02 0.0039 33.4 11.9 55 195-249 446-500 (1041)
352 PF09728 Taxilin: Myosin-like 52.1 1.1E+02 0.0024 29.9 9.3 56 213-268 239-301 (309)
353 PF14932 HAUS-augmin3: HAUS au 52.1 1.8E+02 0.0039 27.4 10.5 11 293-303 206-216 (256)
354 PF10046 BLOC1_2: Biogenesis o 52.0 1.2E+02 0.0027 24.5 8.3 22 240-261 74-95 (99)
355 KOG4436 Predicted GTPase activ 51.8 16 0.00036 40.4 3.9 47 196-242 828-879 (948)
356 KOG0447 Dynamin-like GTP bindi 51.8 29 0.00062 37.6 5.5 74 190-271 220-298 (980)
357 KOG4593 Mitotic checkpoint pro 51.7 1.1E+02 0.0024 33.5 9.9 72 196-271 250-324 (716)
358 KOG0946 ER-Golgi vesicle-tethe 51.4 1.1E+02 0.0024 34.4 9.9 49 194-242 667-716 (970)
359 PF01920 Prefoldin_2: Prefoldi 51.4 38 0.00082 26.6 5.1 37 197-233 62-98 (106)
360 PRK00409 recombination and DNA 51.3 1.4E+02 0.0029 32.9 10.8 33 198-230 521-553 (782)
361 PF02388 FemAB: FemAB family; 50.8 84 0.0018 31.5 8.5 25 197-221 242-266 (406)
362 PF10174 Cast: RIM-binding pro 50.8 99 0.0022 34.2 9.6 53 219-271 302-354 (775)
363 cd07627 BAR_Vps5p The Bin/Amph 50.7 1.1E+02 0.0025 27.7 8.7 28 190-217 108-135 (216)
364 COG4942 Membrane-bound metallo 50.6 2.1E+02 0.0045 29.6 11.3 54 197-250 45-105 (420)
365 KOG3584 cAMP response element 50.2 48 0.001 32.9 6.4 15 228-242 322-336 (348)
366 PF06008 Laminin_I: Laminin Do 50.1 1.7E+02 0.0037 27.3 10.0 67 199-265 47-113 (264)
367 PRK04778 septation ring format 50.0 2.9E+02 0.0062 29.0 12.5 35 185-219 305-339 (569)
368 PRK05431 seryl-tRNA synthetase 49.9 97 0.0021 31.4 8.9 69 200-271 38-109 (425)
369 PF07558 Shugoshin_N: Shugoshi 49.9 15 0.00033 26.3 2.3 31 211-241 14-44 (46)
370 PF07246 Phlebovirus_NSM: Phle 49.6 1.5E+02 0.0032 28.9 9.6 65 205-270 176-240 (264)
371 PF04340 DUF484: Protein of un 49.3 1E+02 0.0023 28.0 8.3 44 219-262 41-84 (225)
372 KOG0980 Actin-binding protein 49.3 2.3E+02 0.005 32.1 12.0 71 198-268 411-481 (980)
373 COG4477 EzrA Negative regulato 49.2 1.1E+02 0.0025 32.5 9.3 70 200-271 251-341 (570)
374 KOG0964 Structural maintenance 49.0 78 0.0017 36.1 8.5 64 199-262 274-337 (1200)
375 PRK00736 hypothetical protein; 49.0 1.2E+02 0.0025 23.3 7.2 22 202-223 3-24 (68)
376 KOG0996 Structural maintenance 49.0 2.2E+02 0.0047 33.3 11.9 67 200-268 823-893 (1293)
377 KOG2991 Splicing regulator [RN 48.8 1.6E+02 0.0036 28.9 9.7 15 257-271 289-303 (330)
378 COG1729 Uncharacterized protei 48.6 35 0.00076 32.9 5.2 48 199-247 58-105 (262)
379 PF15397 DUF4618: Domain of un 48.6 2.6E+02 0.0057 27.0 11.2 69 196-264 80-153 (258)
380 PRK04325 hypothetical protein; 48.5 1.2E+02 0.0026 23.6 7.4 21 201-221 6-26 (74)
381 PF06785 UPF0242: Uncharacteri 48.3 1.6E+02 0.0034 30.0 9.7 42 198-239 128-169 (401)
382 PF12999 PRKCSH-like: Glucosid 48.3 23 0.0005 32.3 3.8 34 192-225 141-174 (176)
383 PF08702 Fib_alpha: Fibrinogen 48.3 67 0.0014 28.2 6.5 26 246-271 104-129 (146)
384 PF05852 DUF848: Gammaherpesvi 48.3 2E+02 0.0044 25.6 9.6 68 193-270 50-117 (146)
385 PF09789 DUF2353: Uncharacteri 48.0 2.5E+02 0.0055 27.9 11.2 25 199-223 88-112 (319)
386 COG3879 Uncharacterized protei 47.9 84 0.0018 30.2 7.6 15 258-272 94-108 (247)
387 PF11853 DUF3373: Protein of u 47.8 15 0.00033 38.3 2.9 28 196-223 30-57 (489)
388 PRK11578 macrolide transporter 47.7 1.4E+02 0.0029 29.0 9.3 26 238-263 143-168 (370)
389 TIGR03319 YmdA_YtgF conserved 46.9 3.3E+02 0.0071 28.6 12.3 83 179-265 59-141 (514)
390 PF04899 MbeD_MobD: MbeD/MobD 46.9 1.4E+02 0.0029 23.5 7.3 36 215-250 25-60 (70)
391 PF14661 HAUS6_N: HAUS augmin- 46.9 2.5E+02 0.0053 26.3 10.5 76 191-269 162-244 (247)
392 PF06632 XRCC4: DNA double-str 46.9 2.6E+02 0.0055 28.0 11.1 42 196-237 136-177 (342)
393 cd07666 BAR_SNX7 The Bin/Amphi 46.8 2.5E+02 0.0054 26.8 10.5 69 196-267 138-209 (243)
394 PRK14160 heat shock protein Gr 46.8 1.7E+02 0.0037 27.4 9.3 45 199-243 56-100 (211)
395 TIGR03007 pepcterm_ChnLen poly 46.4 2.2E+02 0.0049 28.6 10.9 20 252-271 354-373 (498)
396 PRK14154 heat shock protein Gr 46.3 1.3E+02 0.0028 28.2 8.4 6 282-287 160-165 (208)
397 PF01166 TSC22: TSC-22/dip/bun 45.9 40 0.00086 25.9 4.1 20 199-218 23-42 (59)
398 COG1792 MreC Cell shape-determ 45.8 56 0.0012 31.5 6.2 44 194-241 63-106 (284)
399 PF13118 DUF3972: Protein of u 45.7 1.3E+02 0.0029 26.2 7.8 24 224-247 84-107 (126)
400 PF13851 GAS: Growth-arrest sp 45.7 2.4E+02 0.0052 25.8 11.9 57 198-254 87-143 (201)
401 PHA02557 22 prohead core prote 45.7 1.1E+02 0.0023 29.9 8.0 42 213-254 143-184 (271)
402 PF15035 Rootletin: Ciliary ro 45.6 2.4E+02 0.0051 25.7 10.7 45 217-268 66-110 (182)
403 PRK12705 hypothetical protein; 45.5 3.9E+02 0.0085 28.2 13.0 10 198-207 64-73 (508)
404 KOG3433 Protein involved in me 45.4 2.3E+02 0.0049 26.6 9.6 48 198-245 82-129 (203)
405 PF11365 DUF3166: Protein of u 44.8 77 0.0017 26.3 6.0 20 253-272 29-48 (96)
406 TIGR02231 conserved hypothetic 44.8 2.4E+02 0.0053 28.9 11.0 39 228-266 134-172 (525)
407 PLN02678 seryl-tRNA synthetase 44.4 1.4E+02 0.0029 30.9 9.0 69 200-271 43-114 (448)
408 PF10212 TTKRSYEDQ: Predicted 44.4 1.2E+02 0.0027 32.1 8.7 58 210-267 419-476 (518)
409 PF13815 Dzip-like_N: Iguana/D 44.4 1.2E+02 0.0026 25.2 7.3 8 177-184 52-59 (118)
410 PRK10929 putative mechanosensi 44.2 1.4E+02 0.0031 34.4 9.8 62 206-267 175-236 (1109)
411 PF01486 K-box: K-box region; 44.2 81 0.0018 25.3 6.0 20 199-218 77-96 (100)
412 PF15254 CCDC14: Coiled-coil d 44.2 1.2E+02 0.0027 33.7 8.9 21 229-249 391-411 (861)
413 PF04880 NUDE_C: NUDE protein, 44.1 33 0.00072 31.0 4.1 41 196-241 7-47 (166)
414 PF15112 DUF4559: Domain of un 44.1 1.1E+02 0.0023 30.4 7.8 37 235-271 253-289 (307)
415 PHA03162 hypothetical protein; 44.0 29 0.00063 30.5 3.5 21 221-241 16-36 (135)
416 TIGR01730 RND_mfp RND family e 43.7 1.7E+02 0.0038 26.8 8.9 32 239-270 102-133 (322)
417 PF01486 K-box: K-box region; 43.4 1.7E+02 0.0037 23.4 8.1 22 206-227 14-35 (100)
418 PHA02109 hypothetical protein 43.4 57 0.0012 30.3 5.5 25 195-219 191-215 (233)
419 COG3879 Uncharacterized protei 43.3 1.5E+02 0.0032 28.6 8.4 39 186-224 45-84 (247)
420 PF09311 Rab5-bind: Rabaptin-l 43.3 13 0.00029 33.2 1.5 65 199-270 10-74 (181)
421 cd07429 Cby_like Chibby, a nuc 43.1 33 0.00072 29.0 3.7 26 219-244 73-98 (108)
422 KOG0992 Uncharacterized conser 42.7 2E+02 0.0043 30.8 9.8 90 187-287 161-268 (613)
423 PF04871 Uso1_p115_C: Uso1 / p 42.6 2.2E+02 0.0048 24.5 9.7 38 201-238 38-75 (136)
424 COG5493 Uncharacterized conser 42.6 2.2E+02 0.0047 27.0 9.2 19 197-215 46-64 (231)
425 KOG4807 F-actin binding protei 42.4 2.8E+02 0.006 29.0 10.6 50 222-271 460-537 (593)
426 PF13870 DUF4201: Domain of un 42.4 2.4E+02 0.0051 24.8 10.8 45 225-269 84-128 (177)
427 PF05812 Herpes_BLRF2: Herpesv 42.2 39 0.00085 29.1 4.0 25 221-245 6-30 (118)
428 PHA03155 hypothetical protein; 42.1 2.1E+02 0.0044 24.7 8.3 34 221-254 11-55 (115)
429 KOG0288 WD40 repeat protein Ti 42.1 1.4E+02 0.0031 30.9 8.6 36 207-242 37-72 (459)
430 PRK00409 recombination and DNA 42.1 3.6E+02 0.0078 29.7 12.2 7 261-267 615-621 (782)
431 PRK10963 hypothetical protein; 42.0 78 0.0017 29.2 6.3 47 199-249 39-85 (223)
432 KOG4001 Axonemal dynein light 42.0 1.9E+02 0.0042 27.6 8.8 41 185-225 169-213 (259)
433 PF05761 5_nucleotid: 5' nucle 41.9 81 0.0017 32.5 7.0 74 190-272 315-388 (448)
434 KOG2010 Double stranded RNA bi 41.9 2E+02 0.0043 29.2 9.3 65 199-263 121-199 (405)
435 PF08287 DASH_Spc19: Spc19; I 41.8 87 0.0019 27.7 6.3 25 197-221 75-99 (153)
436 PRK10361 DNA recombination pro 41.8 4.3E+02 0.0094 27.7 12.2 24 219-242 68-91 (475)
437 PF09798 LCD1: DNA damage chec 41.5 69 0.0015 34.7 6.6 27 233-259 34-60 (654)
438 PF07426 Dynactin_p22: Dynacti 41.4 2.6E+02 0.0056 25.2 9.4 36 236-271 123-158 (174)
439 PF09787 Golgin_A5: Golgin sub 41.4 1.6E+02 0.0034 30.6 9.0 18 39-56 27-44 (511)
440 PF14712 Snapin_Pallidin: Snap 41.3 1.7E+02 0.0037 22.8 9.4 67 199-265 16-90 (92)
441 KOG1937 Uncharacterized conser 41.2 1.8E+02 0.0038 30.7 9.1 81 185-265 274-378 (521)
442 TIGR01000 bacteriocin_acc bact 41.2 2.1E+02 0.0045 28.9 9.7 24 206-229 238-261 (457)
443 KOG3156 Uncharacterized membra 41.2 1.3E+02 0.0027 28.6 7.5 38 185-223 98-135 (220)
444 KOG0804 Cytoplasmic Zn-finger 41.1 3.9E+02 0.0084 28.2 11.5 79 186-267 331-410 (493)
445 PF05700 BCAS2: Breast carcino 41.1 1.9E+02 0.0042 26.6 8.7 32 216-247 173-204 (221)
446 PRK14140 heat shock protein Gr 40.9 2E+02 0.0043 26.5 8.7 28 198-225 38-65 (191)
447 PHA03011 hypothetical protein; 40.8 1.6E+02 0.0035 25.1 7.4 63 203-265 56-118 (120)
448 PF10226 DUF2216: Uncharacteri 40.8 76 0.0017 29.5 5.9 44 204-247 101-144 (195)
449 PF10351 Apt1: Golgi-body loca 40.8 78 0.0017 31.9 6.6 49 178-230 69-123 (457)
450 PF04899 MbeD_MobD: MbeD/MobD 40.8 1.8E+02 0.0038 22.8 9.4 46 203-248 20-65 (70)
451 COG1382 GimC Prefoldin, chaper 40.7 86 0.0019 27.0 5.9 18 192-209 26-43 (119)
452 PF10359 Fmp27_WPPW: RNA pol I 40.7 2.4E+02 0.0051 29.1 10.1 41 231-271 192-232 (475)
453 TIGR00763 lon ATP-dependent pr 40.7 1.1E+02 0.0023 33.4 8.0 24 248-271 259-282 (775)
454 PF09789 DUF2353: Uncharacteri 40.6 1.2E+02 0.0027 30.1 7.7 37 227-270 191-227 (319)
455 PRK11448 hsdR type I restricti 40.5 1.2E+02 0.0026 34.8 8.6 40 208-247 167-206 (1123)
456 COG3132 Uncharacterized protei 40.5 33 0.00071 31.9 3.5 24 200-223 188-211 (215)
457 TIGR01010 BexC_CtrB_KpsE polys 40.5 1.3E+02 0.0027 29.3 7.8 31 239-269 278-308 (362)
458 PRK10698 phage shock protein P 40.5 3E+02 0.0066 25.5 11.4 71 201-271 56-131 (222)
459 PF14257 DUF4349: Domain of un 40.3 1.1E+02 0.0024 28.4 7.1 31 196-226 161-191 (262)
460 PRK04863 mukB cell division pr 40.3 5.2E+02 0.011 30.9 13.7 14 200-213 317-330 (1486)
461 KOG0239 Kinesin (KAR3 subfamil 40.2 3.3E+02 0.0072 29.7 11.4 42 200-241 223-264 (670)
462 KOG0978 E3 ubiquitin ligase in 40.1 2.6E+02 0.0056 30.8 10.6 48 196-243 523-570 (698)
463 KOG0612 Rho-associated, coiled 39.9 3.4E+02 0.0073 31.9 11.7 87 181-268 475-565 (1317)
464 PF13874 Nup54: Nucleoporin co 39.8 2.4E+02 0.0053 24.1 8.7 31 198-228 52-82 (141)
465 KOG4603 TBP-1 interacting prot 39.6 95 0.0021 28.8 6.3 33 207-239 82-114 (201)
466 PF12999 PRKCSH-like: Glucosid 39.6 1.5E+02 0.0032 27.2 7.5 23 225-247 153-175 (176)
467 PLN02939 transferase, transfer 39.4 3.3E+02 0.0071 31.2 11.5 64 185-248 151-249 (977)
468 PF13874 Nup54: Nucleoporin co 39.3 2E+02 0.0043 24.7 8.0 69 197-265 44-112 (141)
469 KOG2991 Splicing regulator [RN 39.2 1.5E+02 0.0032 29.2 7.8 28 244-271 283-310 (330)
470 KOG0709 CREB/ATF family transc 39.2 1.3E+02 0.0028 31.5 7.8 58 210-274 264-321 (472)
471 PRK10963 hypothetical protein; 39.1 94 0.002 28.6 6.4 9 201-209 55-63 (223)
472 TIGR00606 rad50 rad50. This fa 39.0 4.4E+02 0.0094 30.6 12.8 86 182-267 842-930 (1311)
473 PF07111 HCR: Alpha helical co 39.0 3.3E+02 0.0071 30.1 11.1 83 179-262 300-382 (739)
474 PF13863 DUF4200: Domain of un 38.9 1.4E+02 0.0031 24.3 6.8 27 194-220 78-104 (126)
475 PRK10636 putative ABC transpor 38.9 3.1E+02 0.0068 29.0 10.9 29 199-227 558-586 (638)
476 PF08286 Spc24: Spc24 subunit 38.4 12 0.00025 31.2 0.3 50 192-241 8-66 (118)
477 KOG0980 Actin-binding protein 38.4 4E+02 0.0086 30.4 11.7 46 200-245 490-535 (980)
478 cd07667 BAR_SNX30 The Bin/Amph 38.4 3.6E+02 0.0078 25.7 10.4 33 232-267 174-206 (240)
479 PF06548 Kinesin-related: Kine 38.3 81 0.0017 33.0 6.2 50 221-270 171-239 (488)
480 KOG1029 Endocytic adaptor prot 38.1 2.4E+02 0.0051 31.9 9.9 45 200-244 454-498 (1118)
481 smart00340 HALZ homeobox assoc 38.0 53 0.0012 23.7 3.5 24 221-244 8-31 (44)
482 PF11166 DUF2951: Protein of u 38.0 2.4E+02 0.0053 23.6 9.8 68 200-267 7-74 (98)
483 PF14817 HAUS5: HAUS augmin-li 37.9 5.3E+02 0.012 28.0 12.5 80 185-264 74-153 (632)
484 PRK10361 DNA recombination pro 37.9 4.9E+02 0.011 27.3 11.9 17 205-221 68-84 (475)
485 PF07028 DUF1319: Protein of u 37.8 2.8E+02 0.006 24.3 9.0 72 193-264 26-125 (126)
486 COG0172 SerS Seryl-tRNA synthe 37.8 3.9E+02 0.0084 27.7 11.0 89 177-265 1-101 (429)
487 KOG0804 Cytoplasmic Zn-finger 37.8 3.7E+02 0.008 28.3 10.8 72 195-268 333-404 (493)
488 PRK12704 phosphodiesterase; Pr 37.7 5.1E+02 0.011 27.2 13.3 95 181-275 56-150 (520)
489 PRK05255 hypothetical protein; 37.6 2.5E+02 0.0054 25.5 8.6 74 191-269 68-143 (171)
490 PF09763 Sec3_C: Exocyst compl 37.5 2.5E+02 0.0055 30.0 10.1 70 196-265 22-94 (701)
491 PF08738 Gon7: Gon7 family; I 37.5 1.2E+02 0.0027 25.4 6.2 49 195-262 52-101 (103)
492 TIGR02971 heterocyst_DevB ABC 37.4 2.4E+02 0.0051 26.6 9.0 73 199-271 57-129 (327)
493 KOG1899 LAR transmembrane tyro 37.4 2.1E+02 0.0046 31.5 9.2 68 193-261 163-230 (861)
494 PF10779 XhlA: Haemolysin XhlA 37.4 1.8E+02 0.004 22.1 7.1 52 199-250 1-52 (71)
495 KOG0612 Rho-associated, coiled 37.3 3.2E+02 0.0069 32.1 11.0 73 195-267 456-529 (1317)
496 PRK01156 chromosome segregatio 37.1 3.4E+02 0.0073 29.7 11.1 73 197-270 674-746 (895)
497 PRK05560 DNA gyrase subunit A; 36.7 3.8E+02 0.0082 29.7 11.4 84 192-279 351-480 (805)
498 PF06818 Fez1: Fez1; InterPro 36.7 3.4E+02 0.0074 25.4 9.5 76 195-270 29-104 (202)
499 PRK11147 ABC transporter ATPas 36.4 1.2E+02 0.0026 31.9 7.4 68 180-247 550-624 (635)
500 KOG1853 LIS1-interacting prote 36.4 4.3E+02 0.0094 26.1 10.5 71 198-268 46-120 (333)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=98.95 E-value=2.9e-09 Score=79.86 Aligned_cols=56 Identities=32% Similarity=0.364 Sum_probs=48.9
Q ss_pred chhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 021792 179 ETKMTK-----RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMEN 234 (307)
Q Consensus 179 DpKR~K-----RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN 234 (307)
|+|+.+ |.+|+++|+||.+||.+||.+|+.|+.++..|..+|..|..+...|..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666 99999999999999999999999999999999999998876666666554
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.86 E-value=1.2e-08 Score=76.39 Aligned_cols=55 Identities=36% Similarity=0.477 Sum_probs=50.4
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 021792 180 TKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMEN 234 (307)
Q Consensus 180 pKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN 234 (307)
-+|++ |++|+++|.||.+||.+||.+|..|+.++..|..++..|......|..||
T Consensus 8 ~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 8 RRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555 99999999999999999999999999999999999999988888888876
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.42 E-value=1.2e-06 Score=63.99 Aligned_cols=41 Identities=34% Similarity=0.387 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
|.+|+|||.||.+|+.+||.+|+.|+.++..|..+|..|++
T Consensus 13 r~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 13 REAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998865
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=97.97 E-value=6.1e-05 Score=70.95 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=64.6
Q ss_pred cchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 178 AETKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 178 ~DpKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.+-|++| |..||-+|.||..-++|+|..|..|..|+..|..+-..|...+..|.++|.+|.++|+.+.|+
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566666 999999999999999999999999999999999999999999999999999999999866655
No 5
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.46 E-value=0.00033 Score=66.63 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=40.8
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 180 TKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 180 pKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
-||++ |+.|.++|.|||..|++||.+|.+|..++..|..++..|..
T Consensus 209 Rkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 209 RKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 44555 89999999999999999999999999999999999887643
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=97.33 E-value=0.00041 Score=71.47 Aligned_cols=62 Identities=29% Similarity=0.344 Sum_probs=46.8
Q ss_pred ccchhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 177 NAETKMTK--------RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 177 ~~DpKR~K--------RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
..|+|=.| |+||.-||.||..|+.-||.+++.|..|+..|+.+=+.|.++-..|..||..||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 35666444 999999999999999999999998887777666655555555555555665554
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=97.15 E-value=0.00068 Score=68.78 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=59.6
Q ss_pred cchhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHHHHHH
Q 021792 178 AETKMTK-----RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI---ARVQKEKL 249 (307)
Q Consensus 178 ~DpKR~K-----RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl---~~l~qq~~ 249 (307)
...||+| -+|||-||-||.-||.-||.+|..-.+||.+|..+|..| ..+|..|-++| +++..+..
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L-------e~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL-------ELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH-------hhccHHHHHHHHHHHHHHhhcc
Confidence 5788888 589999999999999999999999999999999999877 55566665544 44444444
Q ss_pred HHHHHHHHHHHHH
Q 021792 250 IMEGQYQYLKKEA 262 (307)
Q Consensus 250 lkda~~E~L~~Ei 262 (307)
=+-++.-.+-..+
T Consensus 321 n~s~qt~tC~av~ 333 (472)
T KOG0709|consen 321 NKSTQTSTCLAVL 333 (472)
T ss_pred cchhccchhHHHH
Confidence 4555555555555
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.94 E-value=0.003 Score=52.74 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcC
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG--QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda--~~E~L~~Ei~RLk~~~~~ 271 (307)
.-|.+||.++..|..+...|+.+|..|-+++..|.+||..|+.+|..+++....+.. --..+.+=-++|..+|.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~E 84 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQE 84 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhc
Confidence 458899999999999999999999999999999999999999999998872111111 011122334567777766
No 9
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.80 E-value=0.0043 Score=52.20 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
-+.+||.++..|..+...|+.+|..|-+++..|..||..|+.+|..+++... ...-...+.+=-..|..+|.+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~-~~~~~~~~~~g~~NL~~LY~E 81 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEP-AKEKKKKEGEGKDNLARLYQE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccccchHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999998755311 000000001112578888877
No 10
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=96.59 E-value=0.018 Score=44.58 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.|++++++|..++..+.++....-.+|+.|...=.....+.......+..|+.|++.|+.-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555556666666666666666666777777777777887777753
No 11
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.42 E-value=0.00019 Score=57.71 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
|.+|+++|.||+.++.+||..+..|+.+...|..++..+.++...+...+..|
T Consensus 39 R~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 39 RGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988888888877777766665554
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.40 E-value=0.075 Score=41.56 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
.-+.+||.||+.+=..++.|.-++..|.+++..|..+|.+|+...+.|.++. .+.++.|..=+++|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~---~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER---NAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999999998888887553 44454444444444
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.03 E-value=0.14 Score=43.99 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+.|=+..-++|+.++..|..++..|...+..|..+...+.-|...+..+...+..+..-...-...++.|+++|+....
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666666666666666666666655555555555666666666665443
No 14
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.79 E-value=0.15 Score=39.59 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
.||..|.+|++.+..+..++...+..+..|+.|+...-.+|.....+..=--..+|+|++|++.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999888888888877777788999999988776
No 15
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.76 E-value=0.029 Score=47.38 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
-+.+||.+|.+|-+++..|+..+..|-+++..|+.||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4789999999999999999999999999999999999999999988
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.46 E-value=0.19 Score=46.32 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+.+.++.+.|..+++...+....|..||.+|+.+++.+..+...-++.++.+++++..==-++|
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345556666677777777777799999999999999988888888888888888755334444
No 17
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=94.98 E-value=0.061 Score=52.37 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
||.|+-=|.+|..||.=||.+|-.|++.|.+|-++|..|..
T Consensus 300 REAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 300 REAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987743
No 18
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.78 E-value=0.22 Score=45.77 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK---------------------LIMEGQYQY 257 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~---------------------~lkda~~E~ 257 (307)
.--|+.+|++||.|+..|..+...++.+...|.++|..|+-+|=..+.-. .--.++++.
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999998882222111 111236788
Q ss_pred HHHHHHHHHHHh
Q 021792 258 LKKEAERLKVSL 269 (307)
Q Consensus 258 L~~Ei~RLk~~~ 269 (307)
|+.||.||-.-.
T Consensus 177 LR~e~s~LEeql 188 (193)
T PF14662_consen 177 LRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHH
Confidence 888888876544
No 19
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=0.51 Score=37.35 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA----ERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei----~RLk~~~~~ 271 (307)
-+..||.||+.-=..++-|.-+|..|.+.+..|+.|-..+....++|++ .++.|+.|- +|||.++|.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~-------eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER-------ENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888887765555555555555544444444444444444444433 355555553 578888874
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.62 E-value=0.25 Score=45.45 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.-|.+|+-.-+.|+.|++.|...|..+...+..|..|+..|+.++.++.|-.+.-. +|++|++.||..++.
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999965555543 355666667766553
No 21
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=94.33 E-value=0.31 Score=47.34 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCccchhhHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021792 175 EHNAETKMTK-----RQF-GQRSRVRKLQYIAELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 175 ~~~~DpKR~K-----RqS-A~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
...+++|+.+ |.. |.|.|.||.+..++|+...+.|+.+|-.|+.++
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444 545 999999999999988887776654444433333
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.27 E-value=0.77 Score=39.19 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL---KQKIARVQKEKLI--------------MEGQYQYLKKEAE 263 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L---K~rl~~l~qq~~l--------------kda~~E~L~~Ei~ 263 (307)
.||..+.+|+.+++.|..+=..+.++-..|+.+|.++ +.++..|+.+..= |.-..|+|+..|.
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3445555555555555544444455555555555333 2233333332221 1225677777777
Q ss_pred HHHHHhc
Q 021792 264 RLKVSLA 270 (307)
Q Consensus 264 RLk~~~~ 270 (307)
-||.+|-
T Consensus 107 DlK~myr 113 (120)
T PF12325_consen 107 DLKEMYR 113 (120)
T ss_pred HHHHHHH
Confidence 7777663
No 23
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=94.15 E-value=0.6 Score=36.74 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHV--------SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~--------~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
+-|.|..+..|+.||=.|.-+|-+|.+.-. .+..||-+||..+..|..+.+-+.-+-..+.+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999987665 346677777777777777666555444444443
No 24
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=0.37 Score=51.00 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENS-----------------KLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~-----------------~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
|.+||.+|+.|+.||..|..+|..|+....+|..+=. ++..+|..|+.+..=+.-.-|.|+++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444443332 23445666666666666777888888
Q ss_pred HHHHHHHhcCC
Q 021792 262 AERLKVSLAIS 272 (307)
Q Consensus 262 i~RLk~~~~~~ 272 (307)
+.+||.+.+..
T Consensus 504 l~~l~k~~~lE 514 (652)
T COG2433 504 LAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHhhh
Confidence 88888777653
No 25
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=93.79 E-value=0.86 Score=37.04 Aligned_cols=59 Identities=25% Similarity=0.436 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHHHHHH------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 208 YFQTLQADLGARVALLLQ------QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~------~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.+..++..|..+|..|+. .-+...+||..|+..+..+..-. ..+..|.+-.||..|+..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 445555666666666653 34667899999999988887666 667889999999999864
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.57 E-value=1.2 Score=35.79 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA----ERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei----~RLk~~~~~ 271 (307)
-++.||.||+.-=-+++-|.-+|..|..++..|..|+..++..=..|+++ |+.|+.|- .|||.++|.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e-------n~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE-------NNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 36789999988777777777777766666666666555544433334333 33344432 477777764
No 27
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=93.21 E-value=0.36 Score=39.93 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
.+..++.+...+..+|+.+..++..+...|.+|-..|..|..+...... .+.+..+|++++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~ 65 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEK 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHH
Confidence 4667888889999999999999999999999999999988888777766 3444444444433
No 28
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.16 E-value=1.5 Score=41.20 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS-LAI 271 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~-~~~ 271 (307)
...-.+|.|++...+.|..|-.....+|....++...|...=+.++..-............++..|+.||.++|.- .|.
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445789999999999999999999999999999999999888888888888888888888999999999999999 777
No 29
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.04 E-value=0.55 Score=37.63 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.+|.+.+..||.....|..+|.....++..|..||.-|..=|.+|....
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677889999999999999999999999999999999999999986543
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.67 E-value=3 Score=39.60 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------hhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQ---------QHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~---------~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
..-+.+.-+-+..-+.+||.+|-.++.++..++.++..++. +...|.-|=..+|.|+.+|+.+..
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~ 113 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELA 113 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555666666666666666666666655542 233344444444555555544443
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.37 E-value=0.45 Score=36.47 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.-|.+||.++-.++..+..|+..|+..+++-..|..+-..|..||..+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 358899999999999999999999999999999999999999999888743
No 32
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.27 E-value=2.5 Score=41.15 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 189 QRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 189 ~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
..-..+..+.+.+||.....|..|...|..+...++++-...-.+.+.++.++..+.++..--.+..+.+..++.+||..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667778888888888888888888888888888888888888899999999999888899999999999999987
Q ss_pred hcC
Q 021792 269 LAI 271 (307)
Q Consensus 269 ~~~ 271 (307)
-.-
T Consensus 136 Nv~ 138 (314)
T PF04111_consen 136 NVY 138 (314)
T ss_dssp -TT
T ss_pred Cch
Confidence 665
No 33
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.20 E-value=0.51 Score=48.65 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=43.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 188 GQRSRVRKLQ-YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 188 A~RSR~RKl~-Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
.+.|++--+| -.+|||.++..|+.|...|+.+...++++-..|..||+.|+.+++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 578999999999999988889988888888888888888888874
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.18 E-value=0.8 Score=35.84 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
.|++.+..+-..|+.|+.+...|..+|..|+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444444444444444443
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.14 E-value=0.59 Score=41.99 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
-|.+|+..+..|+.++..|..+|.........|.-|...|...+..++....--+..|..|
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666666666666555555555555
No 36
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.86 E-value=1.1 Score=42.89 Aligned_cols=45 Identities=31% Similarity=0.311 Sum_probs=32.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021792 226 QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 226 ~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~ 273 (307)
....|..||.+||.++..|.++.+. ..+.|++|-+|||.+++...
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcc
Confidence 3445678888888888877444433 34559999999999999853
No 37
>PRK02119 hypothetical protein; Provisional
Probab=91.76 E-value=0.75 Score=35.94 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
-|.+||.+|-.++..+..|+..|+..+++-..|..+-+.|..||..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666665555555555444444444443
No 38
>PRK00295 hypothetical protein; Provisional
Probab=91.54 E-value=0.98 Score=34.77 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
|.+||.+|-.++..+..|+..|+..+++-..|..+=+.|..||..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999877776666665555555555554
No 39
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.48 E-value=2.7 Score=38.70 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQH----VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~----~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+.|...||.-++.|+.+...+..+|..+...+ .....+-+.|..+-..+.....--++-.+.|+.||.+||.-.++
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999887654 33445556788888888888888888999999999999987664
No 40
>PRK04325 hypothetical protein; Provisional
Probab=91.29 E-value=0.9 Score=35.52 Aligned_cols=45 Identities=29% Similarity=0.237 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
|.+||.||-.++..+..|+..|+..+++-..|..+=+.|..||..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988887666555555444444444433
No 41
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.24 E-value=2.6 Score=46.04 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG-QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda-~~E~L~~Ei~RLk~~~~~ 271 (307)
+.|..|-.+++.++.||++|.-+|..++++-..- ++-+++-.|-......+++-.+ =.-.|++|++|||.++--
T Consensus 134 ~~~~~l~~~l~~~eken~~Lkye~~~~~keleir-~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 134 AEIEDLMARLESTEKENSSLKYELHVLSKELEIR-NEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777777777777776555544433 3335555555555555555444 256799999999998754
No 42
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.15 E-value=8.7 Score=32.90 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHH---
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL-------KQKIARVQKEKLIMEGQ--- 254 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L-------K~rl~~l~qq~~lkda~--- 254 (307)
|+.....-.++..-+..|+..|+.|+.+++.+..++..++.....|..+++.+ |..++.+....+-..+.
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555666666666666666666666655555555555544444 33333333333333322
Q ss_pred -HHHHHHHHHHHHHHhc
Q 021792 255 -YQYLKKEAERLKVSLA 270 (307)
Q Consensus 255 -~E~L~~Ei~RLk~~~~ 270 (307)
.-.-..||++||.-++
T Consensus 134 e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 134 ELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 2234458888887654
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.15 E-value=1.8 Score=40.02 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
+...+|+.+|+.+..++..|..+...|.++...+..|+..|+.+++.+....+++--++-.+-.=+.=|
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~Gll 186 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLL 186 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 455666777777777777777777777777777777777777777777777777776666655544433
No 44
>PRK11637 AmiB activator; Provisional
Probab=91.11 E-value=3.5 Score=41.13 Aligned_cols=84 Identities=8% Similarity=0.025 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 021792 187 FGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE-RL 265 (307)
Q Consensus 187 SA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~-RL 265 (307)
..++...-+.+.|.+++.++..++.+...|..+|..++++-..+..+=..+..+|+.++.+..-.+...+.+++++. |+
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666666666666666666666666666666666666666666655555555555555543 34
Q ss_pred HHHhc
Q 021792 266 KVSLA 270 (307)
Q Consensus 266 k~~~~ 270 (307)
|.+|.
T Consensus 131 ra~Y~ 135 (428)
T PRK11637 131 DAAFR 135 (428)
T ss_pred HHHHH
Confidence 44443
No 45
>PRK00736 hypothetical protein; Provisional
Probab=90.85 E-value=1.3 Score=34.12 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
.|.+||.||-.++..+..|+..|+.-+++-..|..+=..|..||..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998887666665555555555555444
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.83 E-value=2.3 Score=45.99 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
++.||.....|..|+..++.+=+.|-+++..|..||-.|..++..|.+..
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ 120 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ 120 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666666777777777777777777777777777777777776654
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.83 E-value=1.2 Score=45.95 Aligned_cols=9 Identities=33% Similarity=0.649 Sum_probs=5.6
Q ss_pred ccccccccc
Q 021792 292 SGVNWQMLD 300 (307)
Q Consensus 292 ~~~~~q~ld 300 (307)
+.+.|-.++
T Consensus 171 ~~~~Wv~P~ 179 (472)
T TIGR03752 171 GGVVWVEPQ 179 (472)
T ss_pred CceEeeccc
Confidence 577785543
No 48
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.57 E-value=1.4 Score=34.04 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..|=...+.|+.||..|..++..+..++..|...|..-+.||++|
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666666655555555555555555555444
No 49
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=90.48 E-value=0.89 Score=43.31 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
=..|+|||.+..+-..|+.+||..|+.||..|..+|..|
T Consensus 203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999888888888888888888888777777655
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.46 E-value=1.4 Score=34.30 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+-|.+||.+|-.++..+..|+..|+..+++-..|..+=+.|+.||..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888887776655555555444444444443
No 51
>PRK09039 hypothetical protein; Validated
Probab=90.44 E-value=3.5 Score=40.59 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHhc
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ------YQYLKKEA-ERLKVSLA 270 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~------~E~L~~Ei-~RLk~~~~ 270 (307)
-+.|.-.+|+.|+.+++.|..||+.|+..-..+..+.++.+.+|+.|.+. |..++ -+.++.|+ .+||.+.+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~--L~~a~~~~~~~l~~~~~~~~~~l~~~~~ 208 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR--LNVALAQRVQELNRYRSEFFGRLREILG 208 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 34566677888888888888888888888888888888888888877433 33333 13344454 56665555
Q ss_pred C
Q 021792 271 I 271 (307)
Q Consensus 271 ~ 271 (307)
-
T Consensus 209 ~ 209 (343)
T PRK09039 209 D 209 (343)
T ss_pred C
Confidence 4
No 52
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.36 E-value=2.4 Score=38.10 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.++.|+.|+..|..+++.|+++...|..||..|+.++..++.+ +++|-.=+.|-|.++
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD-------Y~~L~~Im~RARkl~ 155 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED-------YQTLIDIMDRARKLA 155 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3666667777777777777777777777777777776666554 445555555555544
No 53
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.18 E-value=7 Score=35.96 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
........+.+++.++..|+.++..+..+|....+....+..++...+..|.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677777777777777777777666666666666666555554
No 54
>PRK09039 hypothetical protein; Validated
Probab=90.13 E-value=5.1 Score=39.45 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
.+|+.++..++++.+...++|..|+++-..|......|...|.+.+++-.-.++..+.|+.+|+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666666554444444444444333
No 55
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=90.03 E-value=5 Score=35.05 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
++.-...+...+++++.+..+|+.|..+...-..+...|...++.......-++...+.|+.|-+.||.-++.
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 4455566777888888889999988888877788888999999999999999999999999999999999887
No 56
>PRK00846 hypothetical protein; Provisional
Probab=89.75 E-value=1.8 Score=34.54 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
+.|.+||.+|-..+..+..|+..|+..++.-..|...=+.|+.||+.++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888888888888888777765555555555555555555443
No 57
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.70 E-value=7.9 Score=33.07 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG---QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda---~~E~L~~Ei~RLk~~~~~ 271 (307)
.+-++.|...|..+++|.+.|..++..|+.++..|..|=..|....+.+...+.-... ..+.|...-+.+-.++|+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567889999999999999999999999999999999999998888777554333332 334444555556666776
No 58
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.45 E-value=5.3 Score=41.00 Aligned_cols=77 Identities=21% Similarity=0.159 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---------
Q 021792 195 KLQYIAELERTVEYF--------------QTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIM--------- 251 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~L--------------q~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lk--------- 251 (307)
|-+|-+||||.+..- +.|..++.-+|..|.+++..--.||.+|.+.+++-+|-..-.
T Consensus 391 KnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELna 470 (593)
T KOG4807|consen 391 KNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNA 470 (593)
T ss_pred HHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 667888888865432 345667777888888888888889999999888766543221
Q ss_pred --HHHHHHHHHHHHHHHHHhcC
Q 021792 252 --EGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 252 --da~~E~L~~Ei~RLk~~~~~ 271 (307)
.-+|-.|.+||.|||.+...
T Consensus 471 HNQELnnRLaaEItrLRtlltg 492 (593)
T KOG4807|consen 471 HNQELNNRLAAEITRLRTLLTG 492 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHhcc
Confidence 12566788999999998764
No 59
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=4.8 Score=42.93 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.+.+|++.+..|+.|+..|..++..+
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443
No 60
>PRK04406 hypothetical protein; Provisional
Probab=89.18 E-value=1.9 Score=33.89 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLS 231 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~ 231 (307)
-|.+||.++-.++..+..|+..|+..+++-..|.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655444443333
No 61
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.01 E-value=1.5 Score=44.24 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=64.9
Q ss_pred cchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 178 AETKMTK--RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 178 ~DpKR~K--RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
.|+.|+| -++|+--|+|-+|--+..|..+..+..|..-|.+++..++....+|..||-.||.-+..++-..|.
T Consensus 217 kdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 217 KDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred cCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5666777 788899999999999999999999999999999999999999999999999999988888766554
No 62
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.82 E-value=4.7 Score=41.54 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH------------------HHHHH---HHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE------------------KLIME---GQYQ 256 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq------------------~~lkd---a~~E 256 (307)
.++-|+.+||.|..|++.|...++.|.-....|..|-..+-.+|+++.-+ .+-|+ -+.|
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45678899999999999999999999888888777765554444444321 11122 2678
Q ss_pred HHHHHHHHHHHHhcC
Q 021792 257 YLKKEAERLKVSLAI 271 (307)
Q Consensus 257 ~L~~Ei~RLk~~~~~ 271 (307)
.|.+|.++||..-+.
T Consensus 378 elrkelehlr~~kl~ 392 (502)
T KOG0982|consen 378 ELRKELEHLRRRKLV 392 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999877665
No 63
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.52 E-value=4.4 Score=33.46 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKL-QYIAELERTVEYFQTLQADL--GARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 185 RqSA~RSR~RKl-~Yi~ELE~kVq~Lq~E~a~L--s~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
|.+|-|.+.-++ +-+.+++++|+.|+++...| ...++.|+-.-..+.-+=++|..+|+.+.++..+
T Consensus 29 ~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445556665555 45566788888888888888 8888888877788888888888888888766543
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.49 E-value=9.4 Score=34.29 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
...|.+++.-++.|+-|..+|..+++.++.....|..||.+|=.|.
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999999999999999999999998876
No 65
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.46 E-value=7.6 Score=36.58 Aligned_cols=73 Identities=25% Similarity=0.237 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+.|+..+..|+.++..+..++......+..|..+...|+..+........--+...+.|+.||..|+.++.+
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 3556666777777777777777777777777777788888777777666666777788999999999888776
No 66
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.30 E-value=5.9 Score=37.09 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAIS 272 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~ 272 (307)
.-.....|..||.+||.+++.|+.+... .++|++|-++||.+++..
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~----~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQE----LEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 3455667888899998888887766543 357889999999999874
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.29 E-value=2 Score=37.63 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVA--LLLQQHVSLSMENSKLKQKIARVQKEKL-IMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~--~L~~~~~~L~~EN~~LK~rl~~l~qq~~-lkda~~E~L~~Ei~RLk~~ 268 (307)
...+.+|+..+..|++|.+.|...++ .|...-..|..|+.+|..||+.|..... +-....+.+.++..+++..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777663 5667778888889999999988886322 2333455555555555543
No 68
>PRK11637 AmiB activator; Provisional
Probab=88.24 E-value=13 Score=37.10 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+++.+++.++.+...+..+|..++++-..+..+=+.+..+|+.++++..-.+...+.++++|..++..
T Consensus 58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.21 E-value=5.9 Score=42.21 Aligned_cols=75 Identities=27% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-
Q 021792 194 RKLQYIAELERTVEYFQTL------------------------QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK- 248 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E------------------------~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~- 248 (307)
.+..-|.|||++|+.++.+ |..|+.+|+.|+..+..|+++|.+|+..|++-.+-+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~k 198 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKK 198 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 4556778888888877765 356788899999999999999998888887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021792 249 LIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 249 ~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.|..-+. .|+.++..||...
T Consensus 199 eL~~kl~-~l~~~l~~~~e~l 218 (617)
T PF15070_consen 199 ELQKKLG-ELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 3444444 3454555554433
No 70
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.99 E-value=3.9 Score=30.87 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
-|.+|+..|++|...+..|+..|..|..+-.....|=.--.+||.++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777666666555544444444444455444
No 71
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.96 E-value=4.5 Score=43.55 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHhhhhhhhhhHHHHHHHHHHHHHH-----HHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGAR---VALLLQQHVSLSMENSKLKQKIARVQKEK-----LIMEGQYQ 256 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~---l~~L~~~~~~L~~EN~~LK~rl~~l~qq~-----~lkda~~E 256 (307)
|..||--|.|-+..+.|+- -+.|.+....|..+ ++.|+.++..|++|=++||.++.+|+.++ .++ +.|
T Consensus 133 qVeaQgEKIrDLE~cie~k--r~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R--~se 208 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEK--RNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR--LSE 208 (861)
T ss_pred HHHHhhhhHHHHHHHHHHH--HhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH--hHH
Confidence 8899999999888876543 33444444444433 26889999999999999999999999655 333 345
Q ss_pred HHHHHHHHHHH
Q 021792 257 YLKKEAERLKV 267 (307)
Q Consensus 257 ~L~~Ei~RLk~ 267 (307)
.|..||.++|+
T Consensus 209 ~l~qevn~~kv 219 (861)
T KOG1899|consen 209 NLMQEVNQSKV 219 (861)
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.95 E-value=8.6 Score=33.80 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
++.+++.++..++.+...+....
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 73
>PF15058 Speriolin_N: Speriolin N terminus
Probab=87.53 E-value=0.75 Score=42.52 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=34.3
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
|.++...|+.||.+||.++..|+....+|.|+.|+...=.+|
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r 51 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR 51 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 456666779999999999999999999999977776665555
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.49 E-value=4.3 Score=39.38 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.-..|++++..|..++|-
T Consensus 277 Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 277 EVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHCc
Confidence 345566666666666665
No 75
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.39 E-value=4.2 Score=36.11 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQ-QHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~-~~~~L~~EN~~LK~rl~~l~q 246 (307)
.+||.....+.+..+.|+.+|..+.+ +...|..++..|+..++.|.+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666554442 235555555555555555554
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.24 E-value=8.4 Score=35.42 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
..++.+..+...+..++..|......+..+....+.++..+.++
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555444443
No 77
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.81 E-value=13 Score=29.07 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
|.|-..+|..|+.|+..|+.+.-.+...-..|+..|.++-..+..+. .-.+.+..||..|+..+.
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~-------~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK-------KKLEELEKELESLEERLK 71 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 55666777778888777777666555555555555555554444444 445566677777766554
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.65 E-value=11 Score=39.93 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 185 RQFGQRSRVRK-LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 185 RqSA~RSR~RK-l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
+.++-+.=++| +.|+.+++.+-+.+......|+.+|..-..+...|..+|..||-+|+
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666 56999999999999999999999999999999999999999987765
No 79
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.63 E-value=15 Score=33.30 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH------HhhhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLL------QQHVSLSMENSKLKQKIARVQKEKLI----MEGQYQYLKKEAERLKV 267 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~------~~~~~L~~EN~~LK~rl~~l~qq~~l----kda~~E~L~~Ei~RLk~ 267 (307)
-+.+|..+++.++.++..|..+|..+. .++..+..+-.+|+.+++.|..+..- --...+.++.++..++.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443 23344555555555555555544431 11357788888888888
Q ss_pred HhcC
Q 021792 268 SLAI 271 (307)
Q Consensus 268 ~~~~ 271 (307)
++..
T Consensus 150 ~anr 153 (188)
T PF03962_consen 150 AANR 153 (188)
T ss_pred HHHH
Confidence 7764
No 80
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=86.54 E-value=1.8 Score=45.92 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
|.+||+=|-||+--|..||..|..|+.|-..|..+ ...+..+=..+|++|..|.|++ ++++.-+....|
T Consensus 499 kvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~V-f~~lrd~eg~~~ 567 (604)
T KOG3863|consen 499 KVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQEV-FQQLRDEEGNPY 567 (604)
T ss_pred chhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHhccccCcc
Confidence 58999999999999999999999999887665443 3344556677888888887764 333333333333
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.51 E-value=3 Score=31.36 Aligned_cols=33 Identities=9% Similarity=0.304 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 230 LSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 230 L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
+..||.+|+..++.+.+-.+--=.++|.....|
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 356777788888888777755556677665543
No 82
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=86.13 E-value=3.2 Score=40.34 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=45.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 191 SRVRKLQYIA----ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 191 SR~RKl~Yi~----ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
-|+||+.-|+ -||-.+++...|-..|..|++-|+++...++..=++.|..|+.|+.-
T Consensus 54 ervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 54 ERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3678886554 48888899999999999999999888888888878888888777653
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.85 E-value=13 Score=39.35 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
++-...||..+..|+.++..|..+|..
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 84
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=85.47 E-value=8.2 Score=41.57 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME---GQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd---a~~E~L~~Ei~RLk~~~~ 270 (307)
|..|..++..|..+...|..++..+.+.......++..+..+|+.+.....-+. .++-.|..||+.||...-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 666666777777777777777777777777777778888888888888777777 788889999999986543
No 85
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=85.45 E-value=1.4 Score=39.72 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQ 256 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E 256 (307)
++++|.|...-=..++-|-.+| +++..|..|+.-||..+..|.|+..+++-+..
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788888888888888888888 66888999999999999999999988877654
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.41 E-value=6.2 Score=38.83 Aligned_cols=64 Identities=30% Similarity=0.308 Sum_probs=46.3
Q ss_pred HHHHHHH---HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 201 ELERTVE---YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 201 ELE~kVq---~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
||.+|.. ..|.|++.|-++|..|++....++.||-+|.+.|.... +++ ..|..|+.-|+.-|.+
T Consensus 221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk------e~Q-~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK------ESQ-RQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHH
Confidence 4555544 34778999999999999999999999999999987652 222 2355566666555543
No 87
>PF15294 Leu_zip: Leucine zipper
Probab=85.06 E-value=7.7 Score=37.69 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
..+|......|..||..||.||..++.++-.-=-....|+.++..|+.+.|.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~ 178 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGD 178 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777888888899999999988888888777888888888888886664
No 88
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.86 E-value=7.5 Score=30.10 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHH
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARVQKEKL-IMEG---QYQYLKKEAERLKVS 268 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~-lkda---~~E~L~~Ei~RLk~~ 268 (307)
|..+|..|-+.+..|..||..|++++.++..+-. +.+- =-..+++=|.|||.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444445555555556666666666655554422 2211 122345556777765
No 89
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.82 E-value=26 Score=32.95 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI----MEGQYQYLKKEAERLKV 267 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l----kda~~E~L~~Ei~RLk~ 267 (307)
+..++.|+..+..+|..|+.+...|...|..|..+|..+++.... -++....|..||..||.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 344455556666666666666666666666666666666544333 22334445555555544
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.74 E-value=11 Score=36.65 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.-+.+++.+++.|+.|...|..+|..|+++...|..|-.+|+.+++.+.++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777777777777777777777777777777777776666666443
No 91
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.72 E-value=15 Score=35.52 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK-LIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~-~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
...+-.-|.+|+..++-+|+++..|-.+|..++.+...+..|+.+++..|+.++++- .+++-+.+.-+.=-.|+|.++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688899999999999999999999999888999999999999888887653 2333333322222357787776
Q ss_pred C
Q 021792 271 I 271 (307)
Q Consensus 271 ~ 271 (307)
-
T Consensus 113 n 113 (265)
T COG3883 113 N 113 (265)
T ss_pred c
Confidence 3
No 92
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.68 E-value=15 Score=32.08 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
|.+|..++..|+.++..|.+++..|... .-|.+|...|+.|+++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~~~i~~l~~e 124 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE-----PTNEELREEIEELEEE 124 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHH
Confidence 7778888888888888888777766443 2345566666666655
No 93
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.54 E-value=20 Score=28.93 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
+..|.+|..+...|+.+...|.++...+..+-..+.. +-.+|+.++..+..+..-.+..-..++.++..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655555555555555555555544433333 34555555555555555555555555555544
No 94
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=84.43 E-value=13 Score=39.78 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+++--++.-.+|+.+|..|++|+..|..+|..+..+...-.++=.....++....+...|-+|....++++...|+...
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~ 151 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYT 151 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444567888999999999999999998888887766666666667778888888888887777666665555433
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.26 E-value=13 Score=39.26 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.3
Q ss_pred CCccccccchhcccc
Q 021792 70 LHRRSASDSVTLLDG 84 (307)
Q Consensus 70 gHRRSsSDS~A~lD~ 84 (307)
+|..|..|=|-++-+
T Consensus 31 ~~~ps~~DWIGiFKV 45 (546)
T PF07888_consen 31 GFHPSSKDWIGIFKV 45 (546)
T ss_pred CCCCCCCCeeEEeec
Confidence 334444444444443
No 96
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.18 E-value=9.1 Score=35.03 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
....+|..+|..++++...-..+|..|.+ .|...|+..+.++..-.....=-......|..||++|+.-..
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek---~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEK---QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666666666666655 345566666666666555555555667788888888887654
No 97
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.95 E-value=19 Score=32.59 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENS 235 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~ 235 (307)
..+|+.++..|+++...|..++..|..+...+...+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555555444444333
No 98
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.90 E-value=5.8 Score=31.52 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQK 240 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~r 240 (307)
|.=|...|..|..++.+|..++..+++....|..||..||+.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666677777777777766654
No 99
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=83.71 E-value=12 Score=30.17 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 188 GQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 188 A~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
+--.|.-+.+-..+||..|+.|+..-+.|-.+|.........|..-|.+++.+|....
T Consensus 23 ~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 23 AVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444458999999999999999999999988889999999999999987654
No 100
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=83.18 E-value=9.5 Score=36.22 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 237 LKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 237 LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
.|+|...||++..........|+.||..||.
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666665555566666666666654
No 101
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.09 E-value=5 Score=47.49 Aligned_cols=77 Identities=27% Similarity=0.298 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 021792 191 SRVRKLQYIAELERTVEY-------FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE-KLIMEGQYQYLKKEA 262 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~-------Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq-~~lkda~~E~L~~Ei 262 (307)
.+.+...-|.||..+|.. ||.++++|.++|.........|.+||..-|+|-+.|..+ ...--..++.|+.||
T Consensus 1237 e~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei 1316 (1822)
T KOG4674|consen 1237 ENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEI 1316 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 344445555555555544 566677777777777788888888888889988888776 333334556666666
Q ss_pred HHHHH
Q 021792 263 ERLKV 267 (307)
Q Consensus 263 ~RLk~ 267 (307)
.+|+.
T Consensus 1317 ~~Lk~ 1321 (1822)
T KOG4674|consen 1317 SRLKE 1321 (1822)
T ss_pred HHHHH
Confidence 66654
No 102
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=83.07 E-value=1.1 Score=37.22 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.-..++|..+..++.|.-.|++.| .++-+.+... |...+..+...|+.+..=++++.+.|..++..||.+...
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888999998888854 3444444433 345677888888888888888999999999999998877
No 103
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.06 E-value=26 Score=29.77 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+|+.++-+|+.+...++.-...|..++..|.+-+..|
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L 49 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSL 49 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Confidence 3333444444443333333333333333333333333
No 104
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.87 E-value=21 Score=32.64 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 186 QFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
-+-+-.+..++.+...||.++..-..+...+..+|.
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~ 134 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIK 134 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333333444444555555555544333333333333
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.66 E-value=17 Score=30.83 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.+|+..+++|++++.++..++..|
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 106
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.54 E-value=20 Score=31.48 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
+.+|+.+...++..+.++..++..+......+..+.+..+.+++.+....
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555444444444455554444443
No 107
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.26 E-value=12 Score=30.20 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQK 240 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~r 240 (307)
|.=|-..|..|..++..|..++..+...+..|..||..||+.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555555555555543
No 108
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.08 E-value=5.1 Score=33.85 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
=.+|-.||+..-.|+.++....+++.+|..||..|-+=|++|..
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999988764
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.02 E-value=16 Score=38.85 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
....+.+.+|...|+.|.+++..+..++..+......+..|..+.+...+.++++..+++
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777777666666666666666666666666666664
No 110
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.91 E-value=20 Score=27.98 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.-|++|=..-+.|....-.+...|..|..+...+..+...|+.+++.++.+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666666666666666666666666666665543
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.87 E-value=6.9 Score=37.06 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 184 KRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 184 KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
-|....+++ -+.||..+++.||.|+..|..+|..++.+-..|...+++|-++|..+
T Consensus 46 e~~~~~~~~-----~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 46 ERISNAHSQ-----LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777663 46799999999999999999999999888888888888888887763
No 112
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=81.80 E-value=0.96 Score=37.29 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
.||.+|...+..|..++..|..++..|+.+...+..++..|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 5899999999999999999999999888888888777777776653
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.50 E-value=27 Score=39.28 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=52.5
Q ss_pred hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 180 TKMTK----RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARV-----ALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 180 pKR~K----RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l-----~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
..|++ ||--.-+.+|.-+|-+|+|+|-+.|......|..=+ +.+.+-+..+..|-++||.+++.-+.+.
T Consensus 1028 ~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ 1105 (1189)
T KOG1265|consen 1028 AGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMED 1105 (1189)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666 888999999999999999999999988877665433 3444555677788889988777655543
No 114
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.47 E-value=12 Score=35.30 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.||.+...++.++..|..+..........|..+-.++...+..|.++..-++...+.|+.++..-|..
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555566666777777888888889999999999999999888776663
No 115
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.39 E-value=8.3 Score=33.95 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG-----QYQYLKKEAERLKVS 268 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda-----~~E~L~~Ei~RLk~~ 268 (307)
+..|...+...+.+...+..++..+..+...+..+|..|+.+...+.....|.|- ..+.|+++|..|+.-
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888888888888888888888888888888888887663 345566666666543
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=9.8 Score=42.04 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.|.++|-+.++.+...+..|-.++..+.|....|..||.+|+..++....+ ...|+++..-||.-+|
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~-------hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISE-------HSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999999988888765322 2334555555666666
No 117
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.01 E-value=47 Score=32.16 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
|.||+..-+.|++|+-.|.++-.-|-.++..|.++=-.|++.|..+.|+++....
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~ 153 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTR 153 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhH
Confidence 3445555555555555555544444444444444444455555555544444433
No 118
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=81.01 E-value=4.8 Score=29.92 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQT----LQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~----E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+|+.-|.|||+++++=+. +......+|. .|..||..||.+|+.
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~-------~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLS-------KLEGENRLLRAELER 47 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 366778899988877541 1223333333 335555555555543
No 119
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.98 E-value=10 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=17.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
.+..||..|+..++.|.++...-+..++.|+.++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555555554444444444444443
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.95 E-value=37 Score=32.93 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=3.9
Q ss_pred hHhhhCCC
Q 021792 55 LDNLLSDP 62 (307)
Q Consensus 55 lDdlL~~p 62 (307)
|.|||++=
T Consensus 16 L~~FL~~~ 23 (325)
T PF08317_consen 16 LQDFLNMT 23 (325)
T ss_pred HHHHHHHh
Confidence 55555443
No 121
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.73 E-value=8.3 Score=29.62 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
.+.....+..++..++++...+..||.+|+.++..|.....+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 334455556666666666666677777777777766654443
No 122
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.66 E-value=7.5 Score=32.54 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
=.+|..|+.....|..+|..|..+-..|..||.+|++.-+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666555555555555555555443
No 123
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.65 E-value=15 Score=32.73 Aligned_cols=39 Identities=36% Similarity=0.437 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 230 LSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 230 L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+..+++.++..++.+.++..-++...++|++.++.|-.-
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666677777777777777888888888888877543
No 124
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.56 E-value=16 Score=33.09 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
+..+.|=.++...|..-|+.|..++......+..|..|+..|...+..+..+..+++.
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~ 123 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA 123 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666678889999999999999999999999999999999999999888888875
No 125
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.45 E-value=8.2 Score=43.49 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
|..|-.++..|+.+..+...+++.|..++..|.+++..|-..++.+.--.-.+|+.|+.+..|.+.|..
T Consensus 303 iiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 303 IIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS 371 (1195)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence 444444444444555555555555555555555555555555555555455556666666666666655
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.09 E-value=29 Score=35.66 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred hhHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 181 KMTK---RQFGQRSRVRK--LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 181 KR~K---RqSA~RSR~RK--l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
||.+ ++-++.++... .+-...||..++.|++++.++..+|.........+...+..+..+|+.|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666 55555444333 34567888888888888888888888888888888888888888888887776
No 127
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.87 E-value=12 Score=37.03 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 021792 254 QYQYLKKEAERLKVSL 269 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~ 269 (307)
+...|+.||.|||...
T Consensus 230 hI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555666665544
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.86 E-value=13 Score=39.76 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----------------------------HhhhhhhhhhHHHHHHHHHHHHH--
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLL----------------------------QQHVSLSMENSKLKQKIARVQKE-- 247 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~----------------------------~~~~~L~~EN~~LK~rl~~l~qq-- 247 (307)
-|.+||+.+..|+.++..|..+|..+. ..-..|..||..|+.+|..|+..
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~ 590 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNS 590 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 567777777777777777777776521 45578899999999999655421
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 248 -----------------KLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 248 -----------------~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
..--.+..+.+.+-.+|||.+++.
T Consensus 591 ~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 591 QPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223456677788899988876
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.77 E-value=30 Score=37.60 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh----------------------hhhhhHHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVS----------------------LSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~----------------------L~~EN~~LK~rl~~l~qq~~ 249 (307)
|..=.+-|..||+|+...+..-+.|-+||....+.+.. +...-.+|-..+..|+.+.+
T Consensus 483 Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666544322211 11122222233556666667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021792 250 IMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 250 lkda~~E~L~~Ei~RLk~~ 268 (307)
.+|-..-.|+.|++-||..
T Consensus 563 ~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 563 QKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777788888888777765
No 130
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.68 E-value=42 Score=29.48 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
++.+-+--+-+.+.|..|+.++..+..+...|..+|..+...+..|.-+=...+.+|..|+
T Consensus 40 ~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 40 KECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666665555555555555554444444444444444444443
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.48 E-value=21 Score=37.79 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
+.+++..+-.|++|.+.+...+..|..+...|..||.-|...|+.+..
T Consensus 143 ~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 143 LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334455555566666666666666666666666666666655555543
No 132
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.46 E-value=39 Score=34.29 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVS 229 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~ 229 (307)
+.+|+.|+.+...+..+|..+..+-..
T Consensus 364 ~~ei~~l~~~~~~~~~~l~~l~~~l~~ 390 (562)
T PHA02562 364 KAAIEELQAEFVDNAEELAKLQDELDK 390 (562)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 133
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.45 E-value=23 Score=36.26 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSL------------------SMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L------------------~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
+-|.+||.++..++.+...+.+++.+|+.....+ ..--..+..++..+..+..=.+...+.|
T Consensus 78 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (525)
T TIGR02231 78 KQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIREL 157 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888888888888888777655322 1222233445555555555555667777
Q ss_pred HHHHHHHHHHhcC
Q 021792 259 KKEAERLKVSLAI 271 (307)
Q Consensus 259 ~~Ei~RLk~~~~~ 271 (307)
++||+.|+.....
T Consensus 158 ~~~l~~l~~~l~~ 170 (525)
T TIGR02231 158 EKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777665543
No 134
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.42 E-value=27 Score=36.94 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 218 ARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 218 ~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.++..+...-..|.+|.+.+|-++..|+.++.---+.+..|..+|+++|....+
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333333444567788888999999999999988888999999999999875544
No 135
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.38 E-value=26 Score=32.48 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
..+|.+|..|+.+...+...|..|+........--..+..+|..|.+
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~ 183 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEE 183 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443333333333333444444433
No 136
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.36 E-value=9.5 Score=37.26 Aligned_cols=81 Identities=22% Similarity=0.190 Sum_probs=49.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021792 177 NAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQ 256 (307)
Q Consensus 177 ~~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E 256 (307)
...|||.+-+-|...- .+.+.+++..+.+...+..+|..|+.+......|...|..+++..+.....-..+..
T Consensus 215 ~V~P~~~~l~~a~~~l-------~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAEL-------EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp CCCHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 4678877744444333 344455555555555566666666666666677777777777777766665556666
Q ss_pred HHHHHHHH
Q 021792 257 YLKKEAER 264 (307)
Q Consensus 257 ~L~~Ei~R 264 (307)
.|..|..|
T Consensus 288 ~L~~E~~R 295 (344)
T PF12777_consen 288 GLSGEKER 295 (344)
T ss_dssp CCHHHHHC
T ss_pred hhcchhhh
Confidence 66666544
No 137
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.29 E-value=16 Score=31.84 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
..+||.+|+.|+.++..+-.+|+.|++....|..+=-.+..+|..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444444444444333333
No 138
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.91 E-value=13 Score=35.54 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.||-.|.+.++.|+..|..+++.| ..|-.++..||+.|+.+.-.-+-....|..|+.+||.-..+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleel-------e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEEL-------EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 455566777777777776666655 44455566666666666555444444555566666655443
No 139
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.86 E-value=7.3 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.+..++..++++...|..+|..|+.+|+.|..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44444444445555555566666666665554
No 140
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.68 E-value=13 Score=38.73 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHH----------hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQ----------ADLGARVALLLQQHVSLSMENSKLKQKIARVQK-----EKLIME--GQYQYLKKEAE 263 (307)
Q Consensus 201 ELE~kVq~Lq~E~----------a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q-----q~~lkd--a~~E~L~~Ei~ 263 (307)
-||.||+.||..+ ..|...|..|-.++-.+..|.+.+...|++|.. +++|++ ...|.|.-|+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4789999999865 468888888888888888999998888887753 455554 46788999998
Q ss_pred HHHHHhcC
Q 021792 264 RLKVSLAI 271 (307)
Q Consensus 264 RLk~~~~~ 271 (307)
.+|+-|..
T Consensus 422 K~k~nyv~ 429 (527)
T PF15066_consen 422 KIKANYVH 429 (527)
T ss_pred HHhhhHHH
Confidence 88887653
No 141
>PF15294 Leu_zip: Leucine zipper
Probab=78.65 E-value=6.1 Score=38.38 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
|-..+..|+.||..|+.++..++.+++...-|++.|+.+|..|+-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999998877
No 142
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.61 E-value=54 Score=30.47 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
.+|+.++..|+.|+..|...+..++.....+..|-..|+.+++.++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455555554444
No 143
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.47 E-value=17 Score=35.53 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG-------QYQYLKKEAERLKV 267 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda-------~~E~L~~Ei~RLk~ 267 (307)
-.+|.+.|.-+...|-..+..|..-+..|-..|+.-++++.+.++ ..|.|..||.|+|.
T Consensus 58 ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444445555555555444 34555555555543
No 144
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.29 E-value=19 Score=39.18 Aligned_cols=76 Identities=20% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ----KEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~----qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
|..||.+|......|...++.-+.++..++-.-..|..|-..++++.+.+- .+..-+-+.-+.|..||+.+|+.+.
T Consensus 606 k~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~ 685 (786)
T PF05483_consen 606 KNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTAD 685 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333333222221 1222222344555566666665544
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=20 Score=39.74 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 021792 254 QYQYLKKEAERLKV 267 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~ 267 (307)
....|..+|+-+..
T Consensus 487 ei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 487 EIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 146
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=78.08 E-value=45 Score=31.79 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=13.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Q 021792 245 QKEKLIMEG---QYQYLKKEAERLK 266 (307)
Q Consensus 245 ~qq~~lkda---~~E~L~~Ei~RLk 266 (307)
+|+..++++ ..+.|..||+.|+
T Consensus 273 eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 273 EQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444443 4567778888775
No 147
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.86 E-value=3.4 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQK 240 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~r 240 (307)
|+-.|+.+|..|..++..|..||.-||..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556666666666666666666653
No 148
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.82 E-value=22 Score=35.98 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSL----SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L----~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
.|+.+++.+++.|+.+...+..++..++.....+ ......|+..+..+..++.-.....+.|+.+|..|
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666665555555433222222 12233444444444444443344444444444333
No 149
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.79 E-value=31 Score=39.12 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
...+++.|..|+..+..+|..++.....+...|..|+.+++.++.+.+-+.-.-+.+++|++.++..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666555555556666666655555555555555555555544433
No 150
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=77.63 E-value=24 Score=34.86 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.+|..+|..|+.++..|..++..+...+..|..||+.|+.---.+...+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a 71 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA 71 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666665444444433
No 151
>PRK02119 hypothetical protein; Provisional
Probab=77.47 E-value=13 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+.+.+||.+|..|+..++-.-..|..|
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~L 28 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEEL 28 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888877777666666655
No 152
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.40 E-value=37 Score=32.39 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--------------------------H
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK--------------------------E 247 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q--------------------------q 247 (307)
.....+..|++.+++++....+|..+|..|......|..+-..|+.++..++. .
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~ 165 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666655555555555555555544443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021792 248 KLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 248 ~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
..|+..+...|-.+.+|+|...
T Consensus 166 ~~L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 166 EELKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHHHhcCHHHHHHHHHHHhcC
Confidence 3445556666667777777665
No 153
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.38 E-value=13 Score=34.84 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=7.5
Q ss_pred HHhhhhhhhhhHHHHHHHH
Q 021792 224 LQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 224 ~~~~~~L~~EN~~LK~rl~ 242 (307)
.+++..|..||.+|+.++.
T Consensus 75 ~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 75 REENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333
No 154
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=77.35 E-value=20 Score=31.51 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLG 217 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls 217 (307)
|=+|+-=|.+.++--.|||.+--.|++++..|.
T Consensus 62 RGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~ 94 (135)
T KOG4196|consen 62 RGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK 94 (135)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777776666666655444444433333
No 155
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.20 E-value=10 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHHHHH
Q 021792 231 SMENSKLKQKIARVQ 245 (307)
Q Consensus 231 ~~EN~~LK~rl~~l~ 245 (307)
..++..|+..++.|.
T Consensus 46 ~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 46 KKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 156
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=77.16 E-value=14 Score=37.05 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=14.0
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
|.-+.-.+-++|+.-.+++..++.|=..+|.-+..
T Consensus 152 LKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~ 186 (405)
T KOG2010|consen 152 LKDVLEEQEEQLAESYRENEEKSKELERQKHMCSV 186 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444433333
No 157
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.10 E-value=43 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
..|+.+++.|..++..|..+...|......+..+.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=77.07 E-value=53 Score=32.50 Aligned_cols=75 Identities=19% Similarity=0.087 Sum_probs=64.0
Q ss_pred cchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 178 AETKMTK---RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 178 ~DpKR~K---RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
.|.=|.| -+++||-.--.+.-|.|+|...+.-+..+...-++-..+++.-..|..||--|.++|......+..++
T Consensus 171 rdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 171 RDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554555 78999999999999999999998888888888888888888889999999999999998888877766
No 159
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.06 E-value=19 Score=39.04 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=30.1
Q ss_pred cchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 178 AETKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 178 ~DpKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
.|.||+| ...+.|+-+ .||..+|..|.+....++.+|..|++++..|......|
T Consensus 425 ~dvkkLraeLq~~Rq~E------~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSE------QELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHhhhhhH------HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 224444444 34555555555555566666666666666555555544
No 160
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.93 E-value=24 Score=38.67 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
.|-|++||+||+.+-.|--+|.-++..|.
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk 436 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLK 436 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46789999999999888888887777443
No 161
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=76.38 E-value=20 Score=30.05 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 211 TLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 211 ~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
.....+..+++.++++...|..+|..|+.+++.|... +|++.|..+.+
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~i~e~AR~~ 97 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDYIEERARSE 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 3445566666777777788888888888888888887 56565555444
No 162
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.18 E-value=12 Score=29.61 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
-|.|||.+|-.=+..+..|+..|+..+..-..+...=+.|-.|+
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777666666666666666654433333333333333333
No 163
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.05 E-value=8.4 Score=31.92 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
-....+.+.+++.+++.|+.++..|..+|..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445566667777777777777777777766643
No 164
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=76.03 E-value=8.5 Score=31.33 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHhc
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE-----KLIME-GQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq-----~~lkd-a~~E~L~~Ei~RLk~~~~ 270 (307)
.+|.-|+......-...+++. .||.+|+..|+.|..+ ...+- ++|-.|++|+.|||..+-
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~-------~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLE-------EENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hHHHHHHHHhcCCCCccchhH-------HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333344443 4445555555555533 23333 479999999999999884
No 165
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.90 E-value=34 Score=29.73 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQH---VSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~---~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
+|=+.|..|..|++.|+.++..+..+|..+.... ......|-.|..||+.|+.+.--.+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 3445666677777777777777766666555433 3333445578888888888764443
No 166
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=75.90 E-value=65 Score=29.63 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH------
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGA-----RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG------ 253 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~-----~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda------ 253 (307)
++...-..+|+-+|..+.+.+.+.+......|.. +-+.|..-...+..|.++||..|+.=..+.+- ++
T Consensus 15 ~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~-~k~~~dK~ 93 (185)
T PF08703_consen 15 KQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIK-EKKTKDKD 93 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH-HhhcccHH
Confidence 6777888999999999999999998887776653 22333344455677888998888776655432 32
Q ss_pred HHHHHHHHHHHH
Q 021792 254 QYQYLKKEAERL 265 (307)
Q Consensus 254 ~~E~L~~Ei~RL 265 (307)
..+.+++||.+-
T Consensus 94 e~er~KrEin~s 105 (185)
T PF08703_consen 94 EQERLKREINRS 105 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777777653
No 167
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.84 E-value=34 Score=38.93 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+.++.+...+..++..|.++...|...++.|+..++.+.+++.-.+..-+.++.+|-.|+..
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444455555555444444443333344455555555543
No 168
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.67 E-value=21 Score=28.79 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQ---QHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~---~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
-+|-.+++.|+.+-..++.+|..+.. ....|..|=++||.+|..++.+..--+..
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999998876 46889999999999999998876554443
No 169
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.63 E-value=10 Score=28.30 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+..+++.|+.+...|..||..|+.+++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444445555555555444
No 170
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.56 E-value=22 Score=35.11 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
+.-|.+|+++++.+-.|+..|...|.........|.+|..+|+.|-+.+. ..|.++ ..|+..||
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~--~mL~Ea-----QEElk~lR 303 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM--AMLHEA-----QEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHhh
Confidence 45688999999999999999999999888888999999998888765432 333333 34555555
No 171
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.02 E-value=19 Score=35.35 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
+.|=|.+++.=.+|+..|+.||+.++++
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999988765
No 172
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.76 E-value=67 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
..-...+..|+..+..++..+..|..+|..|+++...+...-..|+-|.+....+..+..++
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788889999999999999999999999999999999999998888887777764
No 173
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.65 E-value=83 Score=32.54 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH---HHHHHHHHHHHHHHH--------
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK---QKIARVQKEKLIMEG-------- 253 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK---~rl~~l~qq~~lkda-------- 253 (307)
+..|.+-+.+-+|.+..|-.+.+.||++..+|.++-..|..+...|-++.++|. .+|+.-.++..++-+
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~ 204 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQN 204 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666778888888899999999999999998888888888888888776 444333332222222
Q ss_pred ------HHHHHHHHHHHHHHHhcC
Q 021792 254 ------QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ------~~E~L~~Ei~RLk~~~~~ 271 (307)
..+++.+|..++-.+..+
T Consensus 205 la~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 205 LATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776655543
No 174
>smart00338 BRLZ basic region leucin zipper.
Probab=74.51 E-value=27 Score=25.83 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
..++.|+.++..|..+...|..+...|..|+..|+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 175
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.38 E-value=23 Score=40.10 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQH--VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~--~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
-++||++.-++|+.|-.-|.+||.-|..++ ..|..|+=.||++|..|+-+.-.-.-.++.|..|+.-|-....+
T Consensus 265 RveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq 340 (1195)
T KOG4643|consen 265 RVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ 340 (1195)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888899999999999999888888 78888999999999999999888888999999999998776543
No 176
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=74.25 E-value=15 Score=36.50 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHH-----HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 206 VEYFQTLQADLGARVALL-----LQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L-----~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
++.+++....+.+-+-.. .+....|..||.+||.++..|+++.+- .+.+++|-.+||.+...
T Consensus 33 ~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll~~ 99 (337)
T PRK14872 33 YEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEILSP 99 (337)
T ss_pred HHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 444555555554444321 256678888888888888888776664 34445666667776543
No 177
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.91 E-value=37 Score=36.25 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=67.5
Q ss_pred ccchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH-HHHHHH
Q 021792 177 NAETKMTK-----------RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK-QKIARV 244 (307)
Q Consensus 177 ~~DpKR~K-----------RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK-~rl~~l 244 (307)
..||.++. .+.....+..-.+-+.-|+.++..|+.+......++....+++..+..++..+. ++|..+
T Consensus 163 ~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l 242 (754)
T TIGR01005 163 SEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAEL 242 (754)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHH
Confidence 47888887 222222233334456778888889998888888888888888777666776665 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 245 QKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 245 ~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.++...-.+...+.+...+.|+.....
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888777777667777777777776654
No 178
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.79 E-value=33 Score=37.82 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQAD-------LGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~-------Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
||-..|..|-.+.+++..+... |...|+..+++...|.+++-+|..+|+.-..+.--+.+..+.+.+|..|+.
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~ 377 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQ 377 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444 455555556788888888888888888877777777777777777766653
No 179
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=73.68 E-value=47 Score=30.83 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=51.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHH----Hhhhhhh-------hhh
Q 021792 177 NAETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQAD-----------LGARVALLL----QQHVSLS-------MEN 234 (307)
Q Consensus 177 ~~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~-----------Ls~~l~~L~----~~~~~L~-------~EN 234 (307)
+-+..|+||| +++||.++...+.+... ++.|+..|- ++...|. ..=
T Consensus 95 dwEevrLkrE------------La~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l 162 (195)
T PF12761_consen 95 DWEEVRLKRE------------LAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNL 162 (195)
T ss_pred chHHHHHHHH------------HHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCH
Confidence 3456666654 56788888877776654 344444332 2222221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
+.++..|+.+++|+..-+..-..=+.|++.|++
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567899999999999888887888888888863
No 180
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=73.44 E-value=4 Score=43.05 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 214 ADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 214 a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
-.|.++|..|.+++..|..||.+||.||..++.+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4688899999999999999999999999998873
No 181
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.35 E-value=36 Score=29.94 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
|+++...|...+..|..+-..|+.|+..|.+.++-+..++.--+.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444445555555555555544444443333
No 182
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=73.28 E-value=11 Score=37.85 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=12.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
|++++..|..||++||.+++.|+.+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554433
No 183
>PRK04406 hypothetical protein; Provisional
Probab=73.22 E-value=26 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
|.+||.++..|+..++-+-..|..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777766666665555555544
No 184
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=73.16 E-value=40 Score=30.23 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 189 QRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 189 ~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
...++--+..|..|-..|+.-|.++..+..+|..+ ...|..+.+.|+.+...+..-..=..+..+.|++||++++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f---~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDF---KDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 55566667788888888888888888888777655 457788889999999988888888889999999999998865
Q ss_pred h
Q 021792 269 L 269 (307)
Q Consensus 269 ~ 269 (307)
.
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 4
No 185
>PRK10698 phage shock protein PspA; Provisional
Probab=73.07 E-value=43 Score=31.07 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
-..-+..|+..+...+..+..|..++..|+.....+...-..|+.|...-+-+.++.++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999999999999999999999999999999999999988886
No 186
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.93 E-value=55 Score=32.25 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKT 279 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~ 279 (307)
.+++..+..|+.+++.++.+++. ..++|-+.|..+.+-.-.-..-.+.|+.||.++|+++-
T Consensus 132 ~~~~~~~~~l~~~va~v~q~~~~----------qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvl--------- 192 (300)
T KOG2629|consen 132 DKAAKSLNALMDEVAQVSQLLAT----------QQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVL--------- 192 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---------
Confidence 34555666666666666665542 23366666666666655666678899999999996653
Q ss_pred ccCCCCC----CCCCccccccccc
Q 021792 280 YFGTNSA----AEGSQSGVNWQML 299 (307)
Q Consensus 280 ~~~~~~~----~~~~~~~~~~q~l 299 (307)
++++|. +..+.+.--|||-
T Consensus 193 -n~~~f~~p~~p~~~p~ip~wqi~ 215 (300)
T KOG2629|consen 193 -NMSNFAPPVAPSSAPSIPSWQIQ 215 (300)
T ss_pred -cccccCCCCCcccCCCCchhhhc
Confidence 334444 3566778889884
No 187
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=72.89 E-value=34 Score=29.64 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
=.....|+...+....+|..|+.+..........-...|+.|++.++......+...+.+
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444455555666666666667777777788889999999988877776666664
No 188
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=72.74 E-value=43 Score=33.34 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQH----VSLSMENSKLKQKIARVQKE----KLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~----~~L~~EN~~LK~rl~~l~qq----~~lkda~~E~L~~Ei~RLk~ 267 (307)
.+.+.+|+...+.||........+++.+.+-. ..+..+.+.||.=.++|.+- ........+.|+++|.+-+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 46788999999999999988877766554333 33334444443333333222 11234566788888888776
Q ss_pred HhcC
Q 021792 268 SLAI 271 (307)
Q Consensus 268 ~~~~ 271 (307)
...+
T Consensus 83 ~l~D 86 (330)
T PF07851_consen 83 QLFD 86 (330)
T ss_pred hHHH
Confidence 5554
No 189
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.73 E-value=68 Score=29.39 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHH---------------------HHHHHhhhhhhhhhHHHHHHHHH
Q 021792 186 QFGQRSRVRKLQ-YIAELERTVEYFQTLQADLGARV---------------------ALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 186 qSA~RSR~RKl~-Yi~ELE~kVq~Lq~E~a~Ls~~l---------------------~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
-||+.-+...++ -|.||..+++.|..||-.|..-- .....+--.|...-+..+.+..+
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777754 57778888888887777665422 11222333444444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 244 VQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 244 l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+++...=+++.-..++.++++|+.+.-
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777888899999988765
No 190
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.55 E-value=27 Score=28.56 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTL-QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E-~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.+|-+.=|.||..|..- .+....+|..|+.+...|.-||-.|+.+|.....++
T Consensus 26 ~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 26 ALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777521 234566677777777777777777777776665554
No 191
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.27 E-value=30 Score=36.08 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=7.8
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQK 246 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~q 246 (307)
.|..+..+|.++.+.|.+
T Consensus 106 av~~~~~~~~~~~~ql~~ 123 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKS 123 (472)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 334444444444444433
No 192
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=72.16 E-value=18 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
.+|..|+..+..|..+|..|.++-..|..||.+|++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555443
No 193
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.14 E-value=20 Score=29.86 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.|...+..|..++..++++...|..+..+++.++..|.+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554444444445555555555544433
No 194
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.97 E-value=7.5 Score=37.29 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhh----hhhhhhHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVALLLQQHV----SLSMENSKLKQKI 241 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~----~L~~EN~~LK~rl 241 (307)
.+..|+.||..|+.++..|.++.. .|..||..||.-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777776665522222 2555666555533
No 195
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.67 E-value=46 Score=29.36 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 021792 233 ENSKLKQKIARVQKEKL 249 (307)
Q Consensus 233 EN~~LK~rl~~l~qq~~ 249 (307)
.|.+|+.+|+.|+.+..
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 66666666666665543
No 196
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=71.57 E-value=12 Score=38.74 Aligned_cols=66 Identities=18% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIM---EGQYQYLKKEAERLKV 267 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lk---da~~E~L~~Ei~RLk~ 267 (307)
++|-.+|..|+.+|..|..++.-+.-.+..|+.||.-|++- ..+-|+.-- +.+.-.|-++|+-|+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~A--sv~IQaraeqeeEfisntLlkkiqal~k 114 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLA--SVEIQARAEQEEEFISNTLLKKIQALFK 114 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhh--hhHHhhccchHHHHHHHHHHHHHHHhhc
Confidence 46788899999999999999999999999999999998753 333333222 3344466667766653
No 197
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.56 E-value=16 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
|.|||.+|..|.+.+.++..++..+ ..+...|++.++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i-------~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEI-------SESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4566666666655555555554443 4444445544443
No 198
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.53 E-value=69 Score=28.87 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
-...+..|+..+..+...+..|...|..|......+..+-..|+.|.....-+..+.+++
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~ 155 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL 155 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456677777777777777777777777777777888788888887777777777764
No 199
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.46 E-value=8.7 Score=27.52 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=5.4
Q ss_pred hhhhhhHHHHHHHH
Q 021792 229 SLSMENSKLKQKIA 242 (307)
Q Consensus 229 ~L~~EN~~LK~rl~ 242 (307)
.|..||..|+..+.
T Consensus 23 ~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 23 SLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444333333
No 200
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=71.29 E-value=35 Score=29.39 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
.+|+.=..=+.|-++|.++|++|+-+...+..=|..|+-||+-|+
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555566666666666666666666666666655444
No 201
>PRK14127 cell division protein GpsB; Provisional
Probab=71.24 E-value=21 Score=30.18 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 021792 232 MENSKLKQKIARVQKEK 248 (307)
Q Consensus 232 ~EN~~LK~rl~~l~qq~ 248 (307)
.-|-.|-.||..|++++
T Consensus 85 ~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 85 ATNYDILKRLSNLEKHV 101 (109)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35666777888887765
No 202
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.20 E-value=29 Score=38.14 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGA-------RVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~-------~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
..|.|+..++..+.+|++.|+. -|..|.+.......|-..|+.||++++.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4677777777888888887776 233344444444455555555555555443
No 203
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.99 E-value=28 Score=37.85 Aligned_cols=6 Identities=50% Similarity=1.154 Sum_probs=3.5
Q ss_pred hhHhhh
Q 021792 54 WLDNLL 59 (307)
Q Consensus 54 WlDdlL 59 (307)
||+.|-
T Consensus 396 wl~~L~ 401 (717)
T PF10168_consen 396 WLSALQ 401 (717)
T ss_pred cHHHHH
Confidence 666553
No 204
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.67 E-value=18 Score=38.69 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKTY 280 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~~ 280 (307)
.|..|+.|+.|+.-|..+++...+.....-.=--+|-..-..|.|+.-=-+++++.++-|+..++.++|+--..|.++.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888888766655433222112222233344444444568899999999999999999666666543
No 205
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.24 E-value=43 Score=37.48 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
-+-+-|..|+.....+..||+.||..+..|.+|..+|..-+++++.+..-.+...|.+..+
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~sr 149 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSR 149 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344455555555556666666666666666666666666666665555444444444333
No 206
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.19 E-value=75 Score=32.22 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMEN---SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN---~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
...|.+|..+...|+.+...|..+...+.++-..+...+ .+|+.++..+.++..-.+...+.++.++..+-..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666555555544322221 2466666666665555555566666666554433
No 207
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=70.05 E-value=28 Score=33.52 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=35.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021792 226 QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 226 ~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~ 273 (307)
....+..||.+||.+++.+.|.. ..-+.|++|=+|||.+.+...
T Consensus 67 ~~~~~~~en~~Lk~~l~~~~~~~----~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 67 SLKDLALENEELKKELAELEQLL----EEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCcc
Confidence 44567889999999998877654 456778999999999999844
No 208
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.90 E-value=21 Score=28.35 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
...+...+..++..++++...|..||..|+..++.+..-..+.+
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34455666667777777777778888888777777776655544
No 209
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.83 E-value=32 Score=37.63 Aligned_cols=67 Identities=21% Similarity=0.144 Sum_probs=46.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 205 TVEYFQTLQADLGARVALLL----QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~----~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|..|+.|...|..++..+. +....+..+-..|+.++..+++...-.......|++|+.-++.++|+
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444443333 33455677778888888888888777778888899999999888887
No 210
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.72 E-value=32 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHHHHHHHH---HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 200 AELERTVEY---FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 200 ~ELE~kVq~---Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.+|+.|++. ++.|++.|-++|..++++-..+.+||.+|++-|+++.+-.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~ 270 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 355666554 5778899999999999999999999999999888876543
No 211
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=69.62 E-value=19 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+.=|.-|=.-.|.+|..|+.++..|..++..|..+....+.|-..|
T Consensus 37 ~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 37 KALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888899999999999999999998888777666665554
No 212
>PRK02224 chromosome segregation protein; Provisional
Probab=69.54 E-value=40 Score=36.41 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=4.3
Q ss_pred HHHHHHHHhHHH
Q 021792 206 VEYFQTLQADLG 217 (307)
Q Consensus 206 Vq~Lq~E~a~Ls 217 (307)
|..+..++.+|.
T Consensus 574 ~~~~~~~~~~l~ 585 (880)
T PRK02224 574 VAELNSKLAELK 585 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 213
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.53 E-value=62 Score=36.71 Aligned_cols=84 Identities=21% Similarity=0.158 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----------hhhhhhhHHHHHHHHHHHHHHHHHHH-
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQH----------VSLSMENSKLKQKIARVQKEKLIMEG- 253 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~----------~~L~~EN~~LK~rl~~l~qq~~lkda- 253 (307)
+|-++.-=++|-..+.||++.-+-|+.++..+-.+|.-|+++- +.|+.-|=.|..|+..|+...---+|
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999888888888777777777777654 33455565666666665555433333
Q ss_pred ------HHH-------HHHHHHHHHHHH
Q 021792 254 ------QYQ-------YLKKEAERLKVS 268 (307)
Q Consensus 254 ------~~E-------~L~~Ei~RLk~~ 268 (307)
|.| .|++||.-++.+
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~ 505 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGA 505 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 222 366777766443
No 214
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=68.81 E-value=12 Score=26.99 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=13.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 222 LLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 222 ~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.|.+....|..||..|+.+|+.|++
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444455566666666655554
No 215
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.70 E-value=69 Score=29.65 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 021792 253 GQYQYLKKEAE 263 (307)
Q Consensus 253 a~~E~L~~Ei~ 263 (307)
-..+.|..|+.
T Consensus 204 ~~id~le~eL~ 214 (237)
T PF00261_consen 204 KEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 216
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=68.47 E-value=51 Score=37.41 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
+..++++...|..+|..++.....+..+...++.++..+..+.
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444433
No 217
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=68.37 E-value=59 Score=25.92 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
..+..+..|...+..+=..++.+...=..|...++..|-.|++... .+-+.-++||.|||.-..
T Consensus 11 ~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 11 QEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555556677777777777776543 223344789999997553
No 218
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.33 E-value=9.1 Score=32.75 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 210 QTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 210 q~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
..|+..|+.+|..|.+.+..|..||.-||. +..=+|-++|
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~-~~spe~L~ql 105 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT-LASPEQLAQL 105 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHH
Confidence 344555666666666777777888887764 3333444444
No 219
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=68.24 E-value=40 Score=29.02 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
|..+-+.++.+...=..|-.+||.||.-|+-+..-.+.+++.|.+-|.-|-.+.-+
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677778888899999999999999999998888888777777666554444
No 220
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.05 E-value=1.2e+02 Score=29.22 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARV 220 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l 220 (307)
++.+++.++.+...+..++
T Consensus 156 ~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 156 LEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 221
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.82 E-value=1.1e+02 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.+..++..|.+++.....|=+.+.+.|..|+.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555554445555554443
No 222
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.80 E-value=16 Score=35.92 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
...|.-+...|..+|.+||.++..| ++||++||++.-+
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~l--------------erEI~ylKqli~e 287 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASEL--------------EREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 3344455567789999999998765 4566666666543
No 223
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.71 E-value=64 Score=34.29 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVA-------LLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~-------~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
-+.+.+-...++.+...+.+.+..+..+|. .+++++..|.++=..++.++..+..++-..+
T Consensus 193 ~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~ 260 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELD 260 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566565666555555555555544444 4444444444444445555555555544443
No 224
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=67.61 E-value=74 Score=27.49 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+++.+|+.....|++++..|.............+..+-..|
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l 67 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKEL 67 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777765444433333333333333
No 225
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=67.55 E-value=78 Score=30.72 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 214 ADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 214 a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
..|..+|..|+++......-=.-||.+|+.|.|+++-+.-+...|..|+.|
T Consensus 54 ~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~R 104 (277)
T PF15030_consen 54 DELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777789999999999999999999999888766
No 226
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.42 E-value=64 Score=31.63 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=2.9
Q ss_pred hHhhhCC
Q 021792 55 LDNLLSD 61 (307)
Q Consensus 55 lDdlL~~ 61 (307)
|-|||++
T Consensus 12 L~dFL~~ 18 (312)
T smart00787 12 LQDFLNM 18 (312)
T ss_pred HHHHHHH
Confidence 4444443
No 227
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.38 E-value=45 Score=28.83 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
|..-.+.+..+|..+ ...|..-.++|.+||+.|..+..-..++++..++||.-+|.-+
T Consensus 41 m~~A~~~v~kql~~v---s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 41 MSDAVASVSKQLEQV---SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 444455555554433 5567777888889999988888888888888888887666433
No 228
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.29 E-value=53 Score=37.42 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.||+..++.+...+..-+.++..-.+....|.+|--+|+..+...+++..-..-..+.|+.|+..|+...
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555556666677777777777777777776666666677777776666543
No 229
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.17 E-value=21 Score=36.97 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 238 KQKIARVQKE-----KLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 238 K~rl~~l~qq-----~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+.|-++++.+ .|.-+-.+.+|+.+|-|||.++-.
T Consensus 291 ~eReasle~Enlqmr~qqleeentelRs~~arlksl~dk 329 (502)
T KOG0982|consen 291 KEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADK 329 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 233445677888888888887765
No 230
>PF14645 Chibby: Chibby family
Probab=67.11 E-value=15 Score=31.18 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSME 233 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~E 233 (307)
..+.+.|+.||.-|.-++..|----+.-++|
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDMLtettae 107 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDMLTETTAE 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666554333333333
No 231
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.82 E-value=56 Score=31.63 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-----HHHHHHH---------HHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ-----KEKLIME---------GQYQYLKK 260 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~-----qq~~lkd---------a~~E~L~~ 260 (307)
+.-.|.++|+-|+ .-+..+..+|..+++....|..+...|..+|+.-. .++.|+- .+.|.|++
T Consensus 156 r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 156 RPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4445566665443 44556666666666666677777666644443322 2233332 26899999
Q ss_pred HHHHHHHHhcC
Q 021792 261 EAERLKVSLAI 271 (307)
Q Consensus 261 Ei~RLk~~~~~ 271 (307)
|++.|=..|-+
T Consensus 233 EL~~lY~~Y~~ 243 (267)
T PF10234_consen 233 ELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHH
Confidence 98887766654
No 232
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=66.80 E-value=55 Score=30.19 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+-+...|++|.+.|..++.+++..-.....-..-++.+++-+..+....+.....|..-|.+.|..
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666665555555555555555555555555555555555555554443
No 233
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=66.64 E-value=25 Score=29.99 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
+|=.+|..|+..+.+|.++|.-|.++-..|..||..|+...+.|+.
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 3445788888888899999999988889999999988877766554
No 234
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=66.50 E-value=7.2 Score=33.53 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HhhhhhhhhhHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLL-----QQHVSLSMENSKL 237 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~-----~~~~~L~~EN~~L 237 (307)
.=++||+.+++.||-||..|..+|..-. -.-..|+...++.
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~ 48 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEA 48 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHH
Confidence 3467888888888888888887776433 1223455554444
No 235
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.47 E-value=63 Score=30.18 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021792 257 YLKKEAERLKVSLAI 271 (307)
Q Consensus 257 ~L~~Ei~RLk~~~~~ 271 (307)
.|+.||..||.....
T Consensus 91 ~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 91 QLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHh
Confidence 345566666666654
No 236
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.46 E-value=15 Score=34.83 Aligned_cols=49 Identities=35% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
=..+||.|-|+ -+.|||..+..++.++..|..+|.. |..+|-.|=+|+.
T Consensus 83 IVtsQRDRFR~--Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKiR 131 (248)
T PF08172_consen 83 IVTSQRDRFRQ--RNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45678888875 3567777776666666666666664 4777777766553
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.22 E-value=82 Score=29.67 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 189 QRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQ-------QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 189 ~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~-------~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
+..=.+...=+..||.+.+.++.+...|..+...+.+ +......|+..|..++......+.......+.-.+|
T Consensus 25 ~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 25 QEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEE 104 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555667777777766666666555444444 444444556666667777777776666677777788
Q ss_pred HHHHHHHhcC
Q 021792 262 AERLKVSLAI 271 (307)
Q Consensus 262 i~RLk~~~~~ 271 (307)
+.+|+.-+..
T Consensus 105 a~~lq~el~~ 114 (246)
T PF00769_consen 105 AEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876655
No 238
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=66.03 E-value=1.1e+02 Score=28.22 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=9.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 021792 228 VSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
.....+...|+..|++|..=..+
T Consensus 57 lq~~k~~~~l~~eLq~l~~~~~~ 79 (206)
T PF14988_consen 57 LQKEKEQAKLQQELQALKEFRRL 79 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333444444444444433333
No 239
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.91 E-value=27 Score=33.36 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRS 275 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~ 275 (307)
.++++|+..|+.+...-....|.|+.|+..||.+..+-+..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56666666666666666667778888888899888874433
No 240
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.90 E-value=83 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTL 212 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E 212 (307)
..|.+||+++..|+++
T Consensus 50 ~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 50 SRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4466777777666643
No 241
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=65.81 E-value=52 Score=39.78 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ-------KEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~-------qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
..+.+..|..+|..|++.+..|...+..-......+....++|...|++|. .....+.-++.....||++||.
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~ 1167 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR 1167 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444444444444444444444 4444444456677788888887
Q ss_pred HhcC
Q 021792 268 SLAI 271 (307)
Q Consensus 268 ~~~~ 271 (307)
.+-+
T Consensus 1168 ~lee 1171 (1930)
T KOG0161|consen 1168 DLEE 1171 (1930)
T ss_pred HHHH
Confidence 6654
No 242
>PLN02678 seryl-tRNA synthetase
Probab=65.80 E-value=82 Score=32.49 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLS---MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~---~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+..|.+|..+-..|+.+...|.++...+..+-..+. .+-.+|+.++..|.++..-.+.....++.|+..+-..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666665555543322 2224667777777777777777777777777664443
No 243
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.76 E-value=11 Score=30.58 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
-|+.++..|+.+++.++.+|..|..+|..+.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999998654
No 244
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.74 E-value=71 Score=34.14 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+-|++.+.....+.++|..+-++|..-+..++.--..|..-+.++-..|+-|..+...++-+.|.|++|+.+||...
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666666555555555566666667777777777788888888888888888888654
No 245
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.72 E-value=34 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
||.+|..|++..+-+-..|..|++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~ 25 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND 25 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777776666665555555533
No 246
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=65.61 E-value=39 Score=26.67 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
++++-.=|+.|+.+-+.++.||=.|+++|...+|+.-..=-.+++-.+=|
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RVi 52 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVI 52 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34566678899999999999999999999999987654433344433333
No 247
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.60 E-value=55 Score=34.06 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 021792 254 QYQYLKKEAERLKVSL 269 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~ 269 (307)
+..-|+.||+|||.-.
T Consensus 254 hi~~l~~EveRlrt~l 269 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYL 269 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677899999998654
No 248
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.04 E-value=88 Score=37.01 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.+|+.+++..+.+...+..++..++.+...+..+-..|+.++..+.+........-..+..+|++|..+-
T Consensus 358 eELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555566666666666665555555555555666666555443
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.03 E-value=1.2e+02 Score=28.18 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
|.++...-+.|..+...|..++..|+..+..|...-..++.+|+.|++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333333333333444444433
No 250
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.00 E-value=47 Score=25.81 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
++||.++..|+..++-.-..|..|
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEEL 27 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777776666555555544
No 251
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=64.86 E-value=53 Score=34.32 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 021792 196 LQYIAELERTVEYFQT---LQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIM-EGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~---E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lk-da~~E~L~~Ei~RLk~~~~~ 271 (307)
++++.++-.+++.||. +...|..+|...+.+......|.-.|..++.....-.-++ .+++|..++||+.||.++-.
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~k 320 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 3445666666666666666666666666655222222233 35789999999999998875
No 252
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.68 E-value=56 Score=39.53 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 187 FGQRSRVRKLQYI-AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 187 SA~RSR~RKl~Yi-~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
.-+...+||++-. -+|-+.++..+.-...+.+++..+++....|..|.-+|+..+++++.....-+...+.+..+|+.|
T Consensus 1628 ~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1628 EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344445554433 336666666666666666666666666677777777777777777776666666666666666555
Q ss_pred HH
Q 021792 266 KV 267 (307)
Q Consensus 266 k~ 267 (307)
..
T Consensus 1708 ~~ 1709 (1930)
T KOG0161|consen 1708 NA 1709 (1930)
T ss_pred hh
Confidence 43
No 253
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=64.62 E-value=21 Score=34.65 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----H--HHHhhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVA-----L--LLQQHVSLSMENSKLKQKIARVQK--EKLIMEGQYQ 256 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~-----~--L~~~~~~L~~EN~~LK~rl~~l~q--q~~lkda~~E 256 (307)
-+-++|-+|+.|+.-|+.|+++|+ + +-...+.+..|=.++.++|..|+. +..|..|-+|
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~ 285 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTE 285 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 356899999999999999999993 2 234556677788888888888864 3444444333
No 254
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.53 E-value=1e+02 Score=28.47 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
+..+...+..+..||..|...|.-+-++...-++....|++.-+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888999999999999999999999999999999888888764
No 255
>PRK03918 chromosome segregation protein; Provisional
Probab=64.45 E-value=84 Score=33.85 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
.+++.++..|+.+.+.+..++..++.+...|..+=..++.+++.++
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~ 234 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445545555555555555555444444444444444333333
No 256
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.44 E-value=58 Score=32.90 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+|+.+++.++.+...|...|..+.+.
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~ 363 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKL 363 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 667777777777777777777766653
No 257
>PHA03162 hypothetical protein; Provisional
Probab=64.08 E-value=7.1 Score=34.23 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
|..-++||+.+++.||-||..|..+|.
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999884
No 258
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=63.51 E-value=72 Score=29.52 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
-+..||.||.-|+.....+...+..-+++.-.+..+=..||++|.+|+..+
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 477899999999888888888887666777888888888999998888764
No 259
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.30 E-value=57 Score=32.90 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
=-||-+-++|-. +|.++..+++|.++|+ +....|..-.++|+.-++.|+|+.+.-.+..+-|+.=++-
T Consensus 211 visa~~eklR~r-----~eeeme~~~aeq~slk-------Rt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 211 VISAVREKLRRR-----REEEMERLQAEQESLK-------RTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-------hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445555554432 3444555555555544 4444556666666777777777777766666666655543
No 260
>PHA03155 hypothetical protein; Provisional
Probab=63.27 E-value=7.7 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
++||+.+++.|+-||..|..+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578888888888888888887753
No 261
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.25 E-value=1.1e+02 Score=34.85 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 021792 199 IAELERTVE 207 (307)
Q Consensus 199 i~ELE~kVq 207 (307)
|.+|+.++.
T Consensus 830 i~~l~~~~~ 838 (1163)
T COG1196 830 IEELEEEIE 838 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 262
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.18 E-value=50 Score=35.70 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
.+-|||-|-|.|+.|++.+..+|+.|++.-..-..|=.+||..|+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 5678888888888888888888887766555555555555555543
No 263
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.14 E-value=1.2e+02 Score=27.68 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 021792 254 QYQYLKKEAERL 265 (307)
Q Consensus 254 ~~E~L~~Ei~RL 265 (307)
..|+..+||.||
T Consensus 153 ~ke~~~~ei~~l 164 (190)
T PF05266_consen 153 KKEAKDKEISRL 164 (190)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 264
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=62.96 E-value=31 Score=31.44 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
=|+=.|++|+.|..++..|..+++.|- ..-.+|..+-.++..+.....--+-+.+.+..=...|+...+-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~ 110 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDV 110 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 366778888888888888888888663 3355777777777777766555544455444444445554443
No 265
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.93 E-value=76 Score=35.24 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
-+.|.....+.||..+.+|..-|..+..+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~E 470 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEE 470 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 34566666667776666666555444333
No 266
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.89 E-value=25 Score=34.25 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
..+++.+..+..+|..-...+..+..||..|+.+|..+..+..+++...+.+
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~ 161 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKL 161 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777888877778889999999999999999999999988754443
No 267
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.88 E-value=27 Score=36.46 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 211 TLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 211 ~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
...++|..+|+.|.++...|...+..+..+|+ -.+..++.|+.+++.++.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIk-------eLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE-------KLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-------HHHHHHHHHHHHHHhhhc
Confidence 34444444444443333333444444444444 444555666666654444
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.88 E-value=79 Score=33.44 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH---------------HHHHHH---HHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME---------------GQYQYL---KKEAER 264 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd---------------a~~E~L---~~Ei~R 264 (307)
+.|...+..|.-.|..++...++++..+..|.+.++.++..|+.+..--. .+||.| ++||+.
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777888888888888888888888888888888887654332 245544 568888
Q ss_pred HHH
Q 021792 265 LKV 267 (307)
Q Consensus 265 Lk~ 267 (307)
||.
T Consensus 513 LK~ 515 (518)
T PF10212_consen 513 LKL 515 (518)
T ss_pred Hhh
Confidence 884
No 269
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.69 E-value=47 Score=28.20 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
..||..|.. |+.++.+...|..+...|.+.+..+..+-..+|.+|+.+..+...-......+..+.+.+
T Consensus 20 ~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 20 DAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 270
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=62.65 E-value=56 Score=36.16 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------------------HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 187 FGQRSRVRKLQYIAELERTVEYFQTLQAD----------------------LGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 187 SA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~----------------------Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+=||.=++-.+-.+|+|||+..|+.|+.. |.++++.|+++-..|..-+.+||...-.|
T Consensus 46 afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL 125 (829)
T KOG2189|consen 46 AFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNEL 125 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566667778888888888888877654 45555555555555555566666655555
Q ss_pred HHHHHHHHH
Q 021792 245 QKEKLIMEG 253 (307)
Q Consensus 245 ~qq~~lkda 253 (307)
.+.+++.+.
T Consensus 126 ~E~~~vl~~ 134 (829)
T KOG2189|consen 126 LELKYVLEK 134 (829)
T ss_pred HHHHHHHHh
Confidence 555544443
No 271
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.39 E-value=29 Score=37.17 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
++.-+|||..-.+||..++.|..- |=++.+|.-|++-|.+.++-|-
T Consensus 169 lseYSELEEENIsLQKqVs~LR~s----QVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 169 LSEYSELEEENISLQKQVSNLRQS----QVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHH
Confidence 444455666555555555555431 1123445555555544444443
No 272
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.39 E-value=91 Score=31.53 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh--h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM--E--NSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~--E--N~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
..|.+|..+-..|+.+...|.++...+.++-..+.. + -.+|+.++..+.++..-.++..+.+++++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444444444444444444443333322111 1 2355555555555444444444555555544
No 273
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.13 E-value=27 Score=37.69 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 214 ADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 214 a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
++.+.+|+.|+-+...|..|=.++..+++.+.+.-.-+...-++||.||+.-...+
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 57788888899999999999999999999999888888888888999887644443
No 274
>PF13166 AAA_13: AAA domain
Probab=61.95 E-value=72 Score=33.53 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
.++.++...+..++.+...+..++..+......+..+-..++.++..++.+..--+..-+.+..|+.+|
T Consensus 403 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 403 HLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356677777777777777777777777777777777777777777777766654455555666666555
No 275
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.90 E-value=68 Score=28.08 Aligned_cols=51 Identities=8% Similarity=-0.078 Sum_probs=26.4
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
++..|+..+...++.......++..++-.|..|.+++.-.+..+..|..+.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~ 70 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQL 70 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555566555555544444444444433
No 276
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=61.86 E-value=34 Score=29.45 Aligned_cols=12 Identities=58% Similarity=0.628 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 021792 194 RKLQYIAELERT 205 (307)
Q Consensus 194 RKl~Yi~ELE~k 205 (307)
++.+||.+|+..
T Consensus 78 ~~~~~i~~~~~~ 89 (139)
T PF13935_consen 78 RAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHH
Confidence 355555555544
No 277
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.71 E-value=76 Score=33.60 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
.|.+|+.++..++.+...+..++..++++...+..+-..++.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 278
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=61.57 E-value=28 Score=36.09 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|...+.+|+.++.+|+..|++|++||....-...--..+.+.+..|-++=++.+++
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~qe 466 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQFQE 466 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 466677889999999999999999999877665555555555555555555555554
No 279
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.25 E-value=69 Score=31.42 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021792 255 YQYLKKEAERLKVSLAI 271 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~~~ 271 (307)
-..|+++++-|..++|-
T Consensus 273 i~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 273 IEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34445555555555554
No 280
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.25 E-value=69 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=14.9
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 225 QQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 225 ~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
.+...|..|...++.|++.|..|-.|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~l 123 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666554443
No 281
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.08 E-value=21 Score=37.08 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQY 257 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~ 257 (307)
.+|..+++.|.....+.++++.+
T Consensus 212 e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 212 EALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHH
Confidence 33555555555555555554444
No 282
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.98 E-value=1.1e+02 Score=28.00 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+.+++..++++...|..|+..|.+|+..++++
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666655
No 283
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=60.98 E-value=75 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGA---RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLK 259 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~---~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~ 259 (307)
-+..|+.+|...+.++..|.. -+..|+.+-..|..+|...+...++-..+..+..|+..+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555 35555566667777777554444444444444444444444
No 284
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.79 E-value=29 Score=24.83 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHh
Q 021792 255 YQYLKKEAERLKVSL 269 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~ 269 (307)
++.|++||.+|+...
T Consensus 28 ~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 28 NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445555555555443
No 285
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.70 E-value=2.8 Score=44.72 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 188 GQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 188 A~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
+.+.| .|+.-+.+|.++|+.|+..|+.|-.++..|+.+.
T Consensus 317 ve~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 317 VEKYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566 4899999999999999999988777777666544
No 286
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.58 E-value=77 Score=32.83 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 021792 249 LIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 249 ~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
++-+.+.-.+..||.-|+.-..+
T Consensus 86 ~~~en~~~r~~~eir~~~~q~~e 108 (459)
T KOG0288|consen 86 LIAENLRIRSLNEIRELREQKAE 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444444555555544433
No 287
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=60.52 E-value=46 Score=36.86 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH------------------------HhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLL------------------------QQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~------------------------~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
+.--|||+....++.++..+..+...+. +....|..|=++|++.-..|+.--++-+
T Consensus 782 e~r~ELe~I~a~le~e~r~lq~e~~qlk~Qhe~rg~AP~ls~~~s~~St~~tQ~~~dl~AEAkaLRqHK~RLE~R~rILE 861 (966)
T KOG4286|consen 782 EERGELERILADLEEENRNLQAEYDRLKQQHEHKGLAPLPSPPEMMPSTPQSQRDAELIAEAKALRQHKGRLEARMQILE 861 (966)
T ss_pred HHhhHHHHHHHHHHHhhhhhhcCCCcchhhhhcccCCCCCCCcccccCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456899999999999999988766554 3456677788888777777777778888
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 021792 253 GQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~~~~ 273 (307)
-.|+.|+--.+|||.+.-+++
T Consensus 862 dhNKQLESQLqRLr~LLrQP~ 882 (966)
T KOG4286|consen 862 DHNKQLESQLHRLRQLLRQPQ 882 (966)
T ss_pred HHhHHHHHHHHHHHHHHhCCC
Confidence 899999999999999998855
No 288
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.44 E-value=48 Score=26.04 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=17.9
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
.+.+-..|..||=-||.||--|++...
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344455667777777777777766555
No 289
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.33 E-value=48 Score=31.26 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021792 253 GQYQYLKKEAERLKVSL 269 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~ 269 (307)
-++..|.+|-++|+.-.
T Consensus 193 ~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQI 209 (216)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 290
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.23 E-value=83 Score=31.02 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhh--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSL--------------SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L--------------~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.+-.|+-|+..|......|++.+..| .......|.+|+.|+|+ ...++.|++|.....+
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe-------lkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE-------LKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhc
Confidence 34445555555555444444444433 34445556666666655 4568889999998888
Q ss_pred C
Q 021792 271 I 271 (307)
Q Consensus 271 ~ 271 (307)
.
T Consensus 134 ~ 134 (307)
T PF10481_consen 134 S 134 (307)
T ss_pred c
Confidence 5
No 291
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=60.09 E-value=15 Score=28.02 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+.||+.+|..|++|+.-+.+.|..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888887643
No 292
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.01 E-value=61 Score=34.78 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 245 QKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 245 ~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.+...++...-++|++|+++|+..+
T Consensus 558 ~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 558 SKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778899999999999877
No 293
>PLN02320 seryl-tRNA synthetase
Probab=59.93 E-value=1.3e+02 Score=31.64 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCccchhhHH------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh-h-hhhhHHHHHHHHHHH
Q 021792 175 EHNAETKMTK------RQFGQRSRV-RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVS-L-SMENSKLKQKIARVQ 245 (307)
Q Consensus 175 ~~~~DpKR~K------RqSA~RSR~-RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~-L-~~EN~~LK~rl~~l~ 245 (307)
+.+.|.|-++ +++.++-.. --+..|.+|..+...|+++...|.++...+.++-.. . ..+-.+|+.++..|.
T Consensus 64 ~~mlD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk 143 (502)
T PLN02320 64 KAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLK 143 (502)
T ss_pred ccccCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Confidence 4567877776 333222211 014566667766666666666666666555544322 0 112345555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021792 246 KEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 246 qq~~lkda~~E~L~~Ei~RL 265 (307)
++..-.+.....++.|++.+
T Consensus 144 ~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 144 EGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55554455555555555443
No 294
>PHA03161 hypothetical protein; Provisional
Probab=59.50 E-value=1.1e+02 Score=27.52 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.+++....+|+.+|..|.+++.....+|+.|-.= |. .+|+.++.=.---+-+.+.|.-|+.+|...
T Consensus 50 ~~~~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~f-------d~---kkl~~~E~L~drv~eLkeel~~ELe~l~~~ 115 (150)
T PHA03161 50 HENLKKQKSIEGMLQAVDLSIQEKKKELSLLKAF-------DR---HKLSAAEDLQDKILELKEDIHFEIEALNHG 115 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556788888999999888888888877431 11 222222222222234567788888888654
No 295
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=59.39 E-value=56 Score=34.10 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHHHH--------HHHHHH----------------HHHHHHHHHHHHH
Q 021792 215 DLGARVALLL----QQHVSLSMENSKLKQKIARVQKE--------KLIMEG----------------QYQYLKKEAERLK 266 (307)
Q Consensus 215 ~Ls~~l~~L~----~~~~~L~~EN~~LK~rl~~l~qq--------~~lkda----------------~~E~L~~Ei~RLk 266 (307)
+|.++|+.|. ++...|+-||+-|+.+|..-..- +.|++| .++.++++|..||
T Consensus 389 slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK 468 (488)
T PF06548_consen 389 SLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLK 468 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 45677888999999988654332 334444 5677888888887
Q ss_pred HHhc
Q 021792 267 VSLA 270 (307)
Q Consensus 267 ~~~~ 270 (307)
.-+-
T Consensus 469 ~kh~ 472 (488)
T PF06548_consen 469 RKHK 472 (488)
T ss_pred HHHH
Confidence 6543
No 296
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=59.35 E-value=20 Score=27.40 Aligned_cols=15 Identities=33% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcC
Q 021792 257 YLKKEAERLKVSLAI 271 (307)
Q Consensus 257 ~L~~Ei~RLk~~~~~ 271 (307)
.|.+||+|||.--..
T Consensus 25 ~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 25 GLHAEIERLQKRNKD 39 (60)
T ss_pred HHHHHHHHHHHhccc
Confidence 577888888876554
No 297
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=59.05 E-value=19 Score=27.52 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhH----HHHHHHHHHHhh
Q 021792 198 YIAELERTVEYFQTLQAD----LGARVALLLQQH 227 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~----Ls~~l~~L~~~~ 227 (307)
-|.-||+.|..||.|-+. |-++|..|++.+
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~ 37 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRN 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356678888888887643 445555544433
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=58.99 E-value=80 Score=33.41 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
-+.+||.++..|+.+...|..++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888774
No 299
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.86 E-value=1.4e+02 Score=34.18 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM----------ENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~----------EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
+=..-|+++++++..|+.....+..++..+..+-+.|.+ .+..|..+|....++.--+++.-|.|+.|++
T Consensus 686 ~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e 765 (1074)
T KOG0250|consen 686 EAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELE 765 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666555555555444444433333333 3455666666666666666667777777777
Q ss_pred HHHHHhcC
Q 021792 264 RLKVSLAI 271 (307)
Q Consensus 264 RLk~~~~~ 271 (307)
++..-..+
T Consensus 766 ~~~~e~~e 773 (1074)
T KOG0250|consen 766 HIELEAQE 773 (1074)
T ss_pred HHHHHHHH
Confidence 66655443
No 300
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=58.78 E-value=62 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
-|.+|-..|++|.+.+..|...+..+..+.....+|+..-++||....+
T Consensus 26 K~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~ 74 (78)
T COG4238 26 KIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQ 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3566667777777777777777776666667777777777777766543
No 301
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=58.68 E-value=1.3e+02 Score=29.39 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 218 ARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 218 ~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
.+|..|+++-..+.+||-..-.+|.++..+ .+|++
T Consensus 165 ~kl~~LeqELvraEae~lvaEAqL~n~kR~-~lKEa 199 (271)
T PF13805_consen 165 PKLVVLEQELVRAEAENLVAEAQLSNIKRQ-KLKEA 199 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhhHH-HHHHH
Confidence 344555555555555555555555555544 24444
No 302
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.50 E-value=73 Score=35.14 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH----------HHHH-------HHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR----------VQKE-------KLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~----------l~qq-------~~lkda~~E~L~~Ei~RL 265 (307)
|..+..||.|++.|.+.-..|..+-..|++||-.|+.+.+- |.|- -==|+-..|.|+..+.-|
T Consensus 865 eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dl 944 (961)
T KOG4673|consen 865 EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDL 944 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHH
Confidence 55666777777777777777777777777777777654432 2221 111334677788888888
Q ss_pred HHHhcC
Q 021792 266 KVSLAI 271 (307)
Q Consensus 266 k~~~~~ 271 (307)
|.+|-.
T Consensus 945 K~mYk~ 950 (961)
T KOG4673|consen 945 KEMYKE 950 (961)
T ss_pred HHHHHH
Confidence 877753
No 303
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=93 Score=31.45 Aligned_cols=49 Identities=31% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
.|-+..+++|-|.-+.|..-...|.+.++.|+++...|.+.=..|+.+.
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444455555555555555555555555555555544444444444333
No 304
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.16 E-value=1.1e+02 Score=26.36 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGA-------RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~-------~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
|.+++.+...++..+...+++...|.. +|..|+.+-..+..+=..++.+...+ ++.++.|+.|
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i----------~~~~~~El~~ 181 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI----------SERLKEELKR 181 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred H
Q 021792 265 L 265 (307)
Q Consensus 265 L 265 (307)
+
T Consensus 182 f 182 (218)
T cd07596 182 F 182 (218)
T ss_pred H
No 305
>PHA03011 hypothetical protein; Provisional
Probab=58.01 E-value=57 Score=27.74 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
++..++..|--+..+|.-|=+-+.-.+..+++--|-.+-+.--|++||.|||.-..
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444555555555566667778888888886543
No 306
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=57.97 E-value=81 Score=29.89 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
+..||+.++.-..-...|..+|..|+++-..|+-++-++..+|+.|.+...
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456777777666666677777777777777777777776666666655443
No 307
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=57.95 E-value=90 Score=24.47 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQT--LQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~--E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..|..|++.|..|-+ ....|..+|..+.+....|..+-+.+-.+|..+
T Consensus 10 ~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 10 QNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777765 446777777777777777776666666666555
No 308
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=57.90 E-value=87 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
..|+..+..++.+...+.+++...
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~a 120 (334)
T TIGR00998 97 KQLEITVQQLQAKVESLKIKLEQA 120 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444433
No 309
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.80 E-value=1.1e+02 Score=31.11 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALL--LQQHVSLSMENSKLKQKIARVQKEKLIME----GQYQYLKKEAERLKVS 268 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L--~~~~~~L~~EN~~LK~rl~~l~qq~~lkd----a~~E~L~~Ei~RLk~~ 268 (307)
.++-+.+++..+.....-...+......+ .........|...+..++..+.++..+++ .+++.++.|++|+..-
T Consensus 385 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~ 464 (503)
T KOG2273|consen 385 ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEES 464 (503)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444332 22235566777777888888887666665 5689999999998763
No 310
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.63 E-value=1.4e+02 Score=26.63 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV-QKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l-~qq~~lkda~~E~L~~E 261 (307)
=+.+..|...|..+|..|+..+..|....+.+..++..+ +++..++-.++..-.++
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~ 140 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERE 140 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Confidence 356677777777777776666555554444444433322 23444443333333333
No 311
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.50 E-value=27 Score=32.13 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=34.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
-+..|.+|.-+.+ .+...+.|.||+.+|+.|++++..+...+..|-
T Consensus 88 ~Ey~R~~~~e~~k-ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 88 FEYWRQARKERKK-EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred ehhHHhhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655443333 677788999999999999998888877777664
No 312
>PRK15396 murein lipoprotein; Provisional
Probab=57.36 E-value=65 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+|..+|+.|+.++..|+..+.-+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~ 51 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAM 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 313
>PRK00846 hypothetical protein; Provisional
Probab=57.35 E-value=73 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+||.++..|+...+-.-..|..|
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~L 32 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTEL 32 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444433
No 314
>PRK11239 hypothetical protein; Provisional
Probab=57.30 E-value=17 Score=34.20 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
+.+||.+|..|+.|++.|.++|..|..+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999887654
No 315
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.16 E-value=1.8e+02 Score=31.32 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=28.3
Q ss_pred ccchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 177 NAETKMTK-----------RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 177 ~~DpKR~K-----------RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
..||.++. ++.-.+....=.+=+.-|+.++..|+.+......+|..+.+++
T Consensus 236 ~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 236 GDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47888887 2222222222233345566666666666666666666655554
No 316
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.81 E-value=1.2e+02 Score=30.46 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021792 240 KIARVQKEKLIMEGQYQYLKK 260 (307)
Q Consensus 240 rl~~l~qq~~lkda~~E~L~~ 260 (307)
++..|+.+.......++.|.+
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 317
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=56.79 E-value=1.8e+02 Score=31.51 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK---------------EKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q---------------q~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
....|+.-+-.+|...++.-..|..|+..|+.+++..-. ..-.+|-++..|..+|+|++..+..
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~ 310 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE 310 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555443222 2223566677777777777766544
No 318
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.62 E-value=1.4e+02 Score=26.32 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|..|-.+--+|.+-....+=++..++| ...|..+|..|.++|+.|.++ +..+..|+..+|..+-.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444555567888999888888888754 457888899888888887664 45666666666665554
No 319
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=56.49 E-value=18 Score=27.99 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
--+.||+.+|-.||.|+.-|.+++..
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999988763
No 320
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.41 E-value=37 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.+.+.|.+|+.+++.|+.++..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666655
No 321
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.40 E-value=88 Score=23.89 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=22.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 228 VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
......|-.+..+|+..+..-.=-....+.|++|++.||
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777776665554444445555555555554
No 322
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=56.26 E-value=38 Score=29.35 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
=||+|+-.+.-.+..+.++|..|.-......-+=..++-.++.+++...-+|..+++-..|..........
T Consensus 34 ~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~~em~ef~~~~~~ 104 (121)
T PF12507_consen 34 LLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKRKEMKEFQPMVER 104 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhhcchHHHHHHhhc
Confidence 36677777777777888888888888888888888899999999999999999999999998888776654
No 323
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.20 E-value=1.1e+02 Score=27.72 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
-......-.+...-|.+|+.+++.+......= .+-+.+-+....|..++..|+..|+.+
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677778888877776433222 222334444555566666666666543
No 324
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=56.11 E-value=60 Score=35.10 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIM 251 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lk 251 (307)
+|=.||..|..|+..|..++...++-+.+|...+++|.+.|..+.+++..+
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778778877887777777777777777777777777777777665
No 325
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=55.99 E-value=1.6e+02 Score=32.56 Aligned_cols=76 Identities=24% Similarity=0.191 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.-.+...+..+..|.+....|..+|.--...-..|.-||+.||.++.+-..+.-.-+...-.|+.|++.++..+.+
T Consensus 579 e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 579 ECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456667777777777777888888777666677899999999999988888888888888999999999887655
No 326
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.92 E-value=25 Score=30.63 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
|...|.-|+.||.|+..=-.+|..|.++-..+...|+.|..||
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4445666666666666666666666666666677777776553
No 327
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.83 E-value=86 Score=33.51 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHh
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI-M------EGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l-k------da~~E~L~~Ei~RLk~~~ 269 (307)
.-|.+|+.++..++.+...|..++..+..+......++.+|...+...++-..| - .-|++.+..--+||..+.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~ 414 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELA 414 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888888888888888877776666544333222 1 235666666667777766
Q ss_pred cC
Q 021792 270 AI 271 (307)
Q Consensus 270 ~~ 271 (307)
++
T Consensus 415 ~q 416 (594)
T PF05667_consen 415 QQ 416 (594)
T ss_pred HH
Confidence 65
No 328
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=55.61 E-value=93 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
-|..|+.+|+.|+.+.+.+-++|..|+.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888877754
No 329
>PRK12704 phosphodiesterase; Provisional
Probab=55.53 E-value=2e+02 Score=30.17 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 179 ETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 179 DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
+.++.|.+-.+.-+.|+.. +.+.|.+ |......|..+...|.+....|......|..+.+.+++...--+.+.+..
T Consensus 65 E~~~~R~Ele~e~~~~e~~-L~qrE~r---L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~ 140 (520)
T PRK12704 65 EIHKLRNEFEKELRERRNE-LQKLEKR---LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 021792 259 KKEAERL 265 (307)
Q Consensus 259 ~~Ei~RL 265 (307)
..++++.
T Consensus 141 ~~~l~~~ 147 (520)
T PRK12704 141 LQELERI 147 (520)
T ss_pred HHHHHHH
No 330
>PF14282 FlxA: FlxA-like protein
Probab=55.38 E-value=59 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
..|..|+.+++.|+.++..|..- ..|. ...-+.+++.|..+-..-++....|..+.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--------~~~~--~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--------SDLD--AEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--------cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777766666655542 1112 22334455555555444444444444443
No 331
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.23 E-value=48 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSM 232 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~ 232 (307)
.||..|.+++.+|+.+|..|..+-..|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777766555444443
No 332
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.16 E-value=1e+02 Score=24.23 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQADLGARVA-LLLQQHVSLSMENSKLKQKIARVQKEKL-IMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~-~L~~~~~~L~~EN~~LK~rl~~l~qq~~-lkda~~E~L~~Ei~RLk~~ 268 (307)
-......++..|+..+..|+........+|. ....-...|..+-..|..+|+...+... .-+...+.|..++..|+.+
T Consensus 15 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~ 94 (127)
T smart00502 15 KAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHA 94 (127)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888899988888888888886 4455557888888888888887766554 2345566666677666655
Q ss_pred hc
Q 021792 269 LA 270 (307)
Q Consensus 269 ~~ 270 (307)
..
T Consensus 95 ~~ 96 (127)
T smart00502 95 IN 96 (127)
T ss_pred HH
Confidence 44
No 333
>PRK12705 hypothetical protein; Provisional
Probab=54.97 E-value=2.6e+02 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
..|+++...|......|..+-..|.++...|
T Consensus 91 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 91 EQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444444444333333
No 334
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.76 E-value=78 Score=32.00 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQ----HVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~----~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+|..+++.|+.|-..++.+|..+.+. ...|..+-++||.+|..++++.. .+.+.+...+.+|=.+...
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~lPN~~~~ 112 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALK---ALEAELQDKLLSIPNIPHE 112 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCc
Confidence 345566777888888888888765333 45777888888888888887763 4444555555555555543
No 335
>PRK11281 hypothetical protein; Provisional
Probab=54.74 E-value=1.7e+02 Score=33.83 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
+.+...||+|.+.|..++.++++.-..-+.-..-++.|.+-+..+....+.+.+.|...|..
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888887776665555545555555555555555444444444444444
No 336
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=54.61 E-value=1.6e+02 Score=26.28 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE--KLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq--~~lkda~~E~L~~Ei~RLk~ 267 (307)
|..++.|+..+..++..+.++....+ ..+|..++....+ .-|+.++.+.+...|+.=+.
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~ 225 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKK 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333332 2234444433332 23455555555555544433
No 337
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=54.29 E-value=1.9e+02 Score=26.99 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.-..-+|+.|..=+.....|.+.|...+++...........+...++|+.+..--.+.-..|.+.|..|-.-...
T Consensus 112 AQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 112 AQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566777777777777888888888888888888888889999999888888888888888888888766654
No 338
>PRK00295 hypothetical protein; Provisional
Probab=54.20 E-value=86 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
||.+|..|+..++-+-..|..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~L 24 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQAL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444
No 339
>PRK14011 prefoldin subunit alpha; Provisional
Probab=54.13 E-value=60 Score=28.50 Aligned_cols=45 Identities=11% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
|++||+.|+.....|...|..+.+....|. ..|..+++.++++++
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~---~~L~~k~~~~~~~~~ 137 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLR---KELEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 444444444444444444444433333333 336666666665554
No 340
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.10 E-value=1.3e+02 Score=29.61 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQY---QYLKKEAERLKVSL 269 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~---E~L~~Ei~RLk~~~ 269 (307)
+.|.-.-..|.=++-.|.-.|..|++....|.-|+ +.++..++.++..-+.++ ..|+.+|.....+.
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555554443 456667777777777654 44566665554444
No 341
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=54.03 E-value=1.2e+02 Score=24.58 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHHHHHHHHH
Q 021792 187 FGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA-RVQKEKLIME 252 (307)
Q Consensus 187 SA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~-~l~qq~~lkd 252 (307)
.....=..|..-+..||.++.-|.+|.+.-..+.-.+.+....|.+||+.|+..+. +-+-..+|++
T Consensus 14 ~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 14 ELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444456777788999999999999999888888889999999999999987653 3333444555
No 342
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.72 E-value=42 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 233 ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 233 EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
+...+..+++.++++..-.+..++.|+.|+.+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666666666667777777776654
No 343
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=53.70 E-value=78 Score=34.18 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 231 SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 231 ~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
..++++.+.-|+.|..+.+=+ .-+|++++|+.=||.+
T Consensus 323 e~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 323 EKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHh
Confidence 334444444444444333322 6788899998888875
No 344
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.66 E-value=1.6e+02 Score=28.52 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
|.-=+....+||.++..+|.+...|..+.+.|.+....|--|-..||.|...|+-..
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 333344566677777777777777777777777777777777777777777776653
No 345
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.48 E-value=1.3e+02 Score=35.05 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+-|.||++++..|..+++.+..+++.|.+....|..|-..+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34788899999999999999999988888888888775544
No 346
>PLN03188 kinesin-12 family protein; Provisional
Probab=53.35 E-value=63 Score=37.57 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=35.0
Q ss_pred HHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHHHH--------HHHHHH----------------HHHHHHHHHHHHH
Q 021792 215 DLGARVALLL----QQHVSLSMENSKLKQKIARVQKE--------KLIMEG----------------QYQYLKKEAERLK 266 (307)
Q Consensus 215 ~Ls~~l~~L~----~~~~~L~~EN~~LK~rl~~l~qq--------~~lkda----------------~~E~L~~Ei~RLk 266 (307)
.|.++|+.|. ++..-|+-||+-|+.+|-.-..- +.|||| +++.++++|+.||
T Consensus 1159 alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1159 ALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 45677889999999988543322 234554 5667777777777
Q ss_pred HHh
Q 021792 267 VSL 269 (307)
Q Consensus 267 ~~~ 269 (307)
.-+
T Consensus 1239 rkh 1241 (1320)
T PLN03188 1239 RKH 1241 (1320)
T ss_pred HHH
Confidence 665
No 347
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=52.94 E-value=42 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
||..|..+|..++.+...|..||.+|+.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666677777777775
No 348
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.53 E-value=1.3e+02 Score=33.10 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
.|++||.+-..++.+...+......+++....|
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333333
No 349
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.38 E-value=46 Score=29.71 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
.+|..+|..|+.++..|...+.-+..+...|......||.....|.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3466666666666666666666555665666666666666655543
No 350
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.25 E-value=1.3e+02 Score=32.78 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
.|++++|..|+.+....-.+|..+++....|+.....|..|++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555555555555555554444444444443
No 351
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.16 E-value=1.8e+02 Score=33.39 Aligned_cols=55 Identities=29% Similarity=0.249 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
+.--|.+||.+|+.++.+...+.+........+..|..+-..||.+|+.-.++..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557999999999999999999999988888888888888888888777665543
No 352
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.13 E-value=1.1e+02 Score=29.92 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIAR-------VQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~-------l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
-.++..+|..+......|.-||..+|.+-+. |..+....+-..+.++.-|++|-.+
T Consensus 239 F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~L 301 (309)
T PF09728_consen 239 FETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888888777554 4444444555555666666665544
No 353
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=52.06 E-value=1.8e+02 Score=27.38 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 021792 293 GVNWQMLDFAK 303 (307)
Q Consensus 293 ~~~~q~ld~~k 303 (307)
..+||+||+..
T Consensus 206 ~~~~~lld~~~ 216 (256)
T PF14932_consen 206 EDNFQLLDISN 216 (256)
T ss_pred chhhHHhhccc
Confidence 45677777543
No 354
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=51.98 E-value=1.2e+02 Score=24.50 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021792 240 KIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 240 rl~~l~qq~~lkda~~E~L~~E 261 (307)
++..|++-+.--|.....|+.=
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666555555555555543
No 355
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=51.83 E-value=16 Score=40.38 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGA-----RVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~-----~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
-+||.|++-.+..||.|..+++. ++..|+..+..+...|..|-.+++
T Consensus 828 ~kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq 879 (948)
T KOG4436|consen 828 SKQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQ 879 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhc
Confidence 37899999999999999998887 333344444444444444444433
No 356
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=51.77 E-value=29 Score=37.59 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 021792 190 RSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ-----KEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 190 RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~-----qq~~lkda~~E~L~~Ei~R 264 (307)
-|-+-|..|++ ++.+|+.||+|. |..|+. +|+....|..||++|+ ++-.+. ..+.||..+..+-. ||
T Consensus 220 ts~E~~K~~vs-~~e~i~~LQeE~--l~tQ~k-YQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYS-EV-- 291 (980)
T KOG0447|consen 220 TSYEQQKRKVS-DKEKIDQLQEEL--LHTQLK-YQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYS-EV-- 291 (980)
T ss_pred CCHHHHhhhhh-HHHHHHHHHHHH--HHHHHH-HHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHH-HH--
Confidence 34455566665 577899999986 455664 6888899999999999 554333 23455555655543 33
Q ss_pred HHHHhcC
Q 021792 265 LKVSLAI 271 (307)
Q Consensus 265 Lk~~~~~ 271 (307)
|-.+.+.
T Consensus 292 LD~Ls~Y 298 (980)
T KOG0447|consen 292 LDVLSDY 298 (980)
T ss_pred HHHHhcc
Confidence 4444444
No 357
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.69 E-value=1.1e+02 Score=33.46 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 196 LQYIAELERTVEYFQTLQADLGA---RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~---~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
++|..+||+....+..|.++++. .+.+|+.+...|..++.. +..|..+...-+.+|+-|+.|.+|-..+-..
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~----~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR----LEKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666666664432 344555555555555443 3455566666677788888887776655544
No 358
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.42 E-value=1.1e+02 Score=34.35 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=38.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 194 RKLQY-IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 194 RKl~Y-i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
|-+.| |++|-.++..|+.|+..|.+++......+..|.-++.-||.+|.
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33443 66777788888888888888888888888888888888888887
No 359
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.36 E-value=38 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSME 233 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~E 233 (307)
..+.+|+.++..++.++..|..++..+..+...+..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888877777776655544433
No 360
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.30 E-value=1.4e+02 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
.|.+||.+-..++.+...+...+..+++....|
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333333333
No 361
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.83 E-value=84 Score=31.45 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+|+..|+.++..|+.++..|..++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666554
No 362
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=50.82 E-value=99 Score=34.19 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+|--++.....+..++..++.+|..|.-...-++...+.|..||.+||.-+..
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334444445566777777777777777777777888888888888776554
No 363
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=50.70 E-value=1.1e+02 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021792 190 RSRVRKLQYIAELERTVEYFQTLQADLG 217 (307)
Q Consensus 190 RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls 217 (307)
--|.++++|...++..+..+++....|.
T Consensus 108 ~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 108 AQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777766666554
No 364
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.55 E-value=2.1e+02 Score=29.60 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVE-------YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 197 ~Yi~ELE~kVq-------~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
+.|+++|.++. .|+.++..+..+|..+..+......++.+++.+|..+......
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 35566666554 5555555666666666666666666777777777766655443
No 365
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=50.19 E-value=48 Score=32.91 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=6.3
Q ss_pred hhhhhhhHHHHHHHH
Q 021792 228 VSLSMENSKLKQKIA 242 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~ 242 (307)
.-|.++|++|-+.|+
T Consensus 322 AVLENQNKaLIEELK 336 (348)
T KOG3584|consen 322 AVLENQNKALIEELK 336 (348)
T ss_pred HHHhcccHHHHHHHH
Confidence 333444444444333
No 366
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.10 E-value=1.7e+02 Score=27.30 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
+..||..+..|..+...|..+++....+...+...=..+..+.+.|.....--..-...+-.++.+|
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666655555555544444444444444444433333333344444333
No 367
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.95 E-value=2.9e+02 Score=29.02 Aligned_cols=35 Identities=3% Similarity=0.097 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGAR 219 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~ 219 (307)
|..+.+...+=..|+..++...+.|..|...|+..
T Consensus 305 ~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 305 RKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333445555555555555544444444
No 368
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.87 E-value=97 Score=31.43 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQ---HVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~---~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+|..+++.|+.+...++.+|..+... ...|..|-++||.+|+.++.+.. .+.+.+.+.+.+|=.+...
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD---ELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCc
Confidence 345667778888888888888764333 34688888889999888877653 4455566677777666665
No 369
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=49.86 E-value=15 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 211 TLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 211 ~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
..++.|+.+|..|+.....|..||-.|+.++
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3455666666666666666677777776655
No 370
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.65 E-value=1.5e+02 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+++.|+.+...+...+..++ .+..+.....++..|.+.++.+..+....-...|.++.+||.-.+
T Consensus 176 ~i~~l~~~l~~~~~~~~~~~-~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~ 240 (264)
T PF07246_consen 176 EISNLTNELSNLRNDIDKFQ-EREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDIS 240 (264)
T ss_pred HHHHhhhhHHHhhchhhhhh-hhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444432222 223344444555555554555555555555556677777765543
No 371
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=49.33 E-value=1e+02 Score=28.03 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
-|++.+.+-..|+.+|..|+.+|+.|...+.-.|++.+.+..=+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888888888887777776665543
No 372
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=49.31 E-value=2.3e+02 Score=32.12 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
-++|+|++....++....|...++.|.+.+..|-..|..+-.+++.-++-..-.+-++..|..-|++|.-.
T Consensus 411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888888877777777777776666554444333333444444444444433
No 373
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=49.15 E-value=1.1e+02 Score=32.53 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH----HH-----------HHH------HHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE----KL-----------IME------GQYQYL 258 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq----~~-----------lkd------a~~E~L 258 (307)
.+++.+++.|.+.....+..|+.| +......|+..+..+|+.|.+. +. +.+ ..++.|
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L 328 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHL 328 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 457788888888888888888766 4556677888888888877542 21 111 268899
Q ss_pred HHHHHHHHHHhcC
Q 021792 259 KKEAERLKVSLAI 271 (307)
Q Consensus 259 ~~Ei~RLk~~~~~ 271 (307)
+.||.+++..|.-
T Consensus 329 ~~Eie~V~~sY~l 341 (570)
T COG4477 329 KEEIERVKESYRL 341 (570)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999876
No 374
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.01 E-value=78 Score=36.14 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
|.|||.+.+.|..|-.++.++-+..-++.+.|..+=+.|..+|+.=.|+....-...+.++.+|
T Consensus 274 i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 274 IKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 4455555555555555555555555555666666666666666655555554444333333333
No 375
>PRK00736 hypothetical protein; Provisional
Probab=48.98 E-value=1.2e+02 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+|.+|..|+..++-+-..|..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444333
No 376
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.96 E-value=2.2e+02 Score=33.28 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK---QKIARVQKEKLIMEGQYQYLK-KEAERLKVS 268 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK---~rl~~l~qq~~lkda~~E~L~-~Ei~RLk~~ 268 (307)
+.|+..|+.+-.+.+.|..+|+.++.....-+.++..|+ .+|+.++++. -++..++.+ .+|..|+..
T Consensus 823 ~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~--e~~qe~~~Kk~~i~~lq~~ 893 (1293)
T KOG0996|consen 823 EKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEV--EELQEKAAKKARIKELQNK 893 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHH
Confidence 334444444444444444455444444344444444443 3455554432 222233344 455555443
No 377
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=48.84 E-value=1.6e+02 Score=28.93 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021792 257 YLKKEAERLKVSLAI 271 (307)
Q Consensus 257 ~L~~Ei~RLk~~~~~ 271 (307)
.-++||+||+.-..+
T Consensus 289 etr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 289 ETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666554433
No 378
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.57 E-value=35 Score=32.91 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+.+||.++..|+.++..|+. +..++.+......+..+.-.||+.++..
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g 105 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESG 105 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 57788888888888888877 6666555444443333333444444433
No 379
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.57 E-value=2.6e+02 Score=27.04 Aligned_cols=69 Identities=7% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALL----LQQHVSLSMENSKLKQKIARVQKEKLI-MEGQYQYLKKEAER 264 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L----~~~~~~L~~EN~~LK~rl~~l~qq~~l-kda~~E~L~~Ei~R 264 (307)
-..+..|+..|..|.+++.....+|.+| ++++-.-.+.=..|+.+|+.+....+. .|.+++..+.|...
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~ 153 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELAS 153 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666766666666666666554 344444455555666666665443332 23444544444433
No 380
>PRK04325 hypothetical protein; Provisional
Probab=48.47 E-value=1.2e+02 Score=23.60 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.+|.+|..|+..++-+-..|.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe 26 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLID 26 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444443333333
No 381
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.33 E-value=1.6e+02 Score=29.98 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
.+..||.-|..+..|+..|..+|..+.+++.....|+..|-.
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 344556666666666666666666666666555555555533
No 382
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=48.32 E-value=23 Score=32.30 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
=.+|.+||.+-+.+.+.++.+...|..+|...++
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346677777777777777777777777665544
No 383
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=48.29 E-value=67 Score=28.15 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 246 KEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 246 qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+.-+.-....+.+..+|+||++...+
T Consensus 104 ~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 104 SNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344567778888888887765
No 384
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=48.28 E-value=2e+02 Score=25.63 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.++++...++..+|..|+.++..-..+++.|.. . | +.+++.++.=.---+-+-|.|..|+.+|....|
T Consensus 50 ~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~-~------d---~~kv~~~E~L~d~v~eLkeel~~el~~l~~~~~ 117 (146)
T PF05852_consen 50 HNSLREECEIKNKVSSLETEISEKKKELSHLKK-F------D---RKKVEDLEKLTDRVEELKEELEFELERLQSAGG 117 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344455567777888888888888888887643 1 1 122233332222223467888999999987733
No 385
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.02 E-value=2.5e+02 Score=27.92 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+.+|-.++..+|.++..|+.+++.+
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3344445555555555555555443
No 386
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.89 E-value=84 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcCC
Q 021792 258 LKKEAERLKVSLAIS 272 (307)
Q Consensus 258 L~~Ei~RLk~~~~~~ 272 (307)
++.|++-||.++|..
T Consensus 94 ie~~l~~l~~~aG~v 108 (247)
T COG3879 94 LEDRLEKLRMLAGSV 108 (247)
T ss_pred HHHHHHHHHHHhccC
Confidence 334788899999883
No 387
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=47.80 E-value=15 Score=38.25 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+|-|++|+++|+.|+.+...|..+|...
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchh
Confidence 3456666666666666655555554433
No 388
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=47.74 E-value=1.4e+02 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 238 KQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 238 K~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
+..++..+.+.....+..+.+++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (370)
T PRK11578 143 QQDLDTAATELAVKQAQIGTIDAQIK 168 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333
No 389
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.91 E-value=3.3e+02 Score=28.57 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 179 ETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 179 DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
+.++.|.+-.++-+.|+.+ +...|.+ |......|..+...|++....|.....+|..+.+.+.+...-.+.+.+..
T Consensus 59 E~~~~R~Ele~el~~~e~r-L~qrE~r---L~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~ 134 (514)
T TIGR03319 59 EVHKLRAELERELKERRNE-LQRLERR---LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQ 134 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 021792 259 KKEAERL 265 (307)
Q Consensus 259 ~~Ei~RL 265 (307)
..++++.
T Consensus 135 ~~~le~~ 141 (514)
T TIGR03319 135 REELERI 141 (514)
T ss_pred HHHHHHH
No 390
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=46.91 E-value=1.4e+02 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
+.....+-|+........+|.+|+.++..|.+++..
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556667777777777777777654
No 391
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=46.90 E-value=2.5e+02 Score=26.26 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 021792 191 SRVRKLQYIAELERTVEY---FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQY----LKKEAE 263 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~---Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~----L~~Ei~ 263 (307)
-..-+-.|+..|++++.. ++.....|..++..|..+...+..+- +.............+.+... +.++|+
T Consensus 162 ~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 238 (247)
T PF14661_consen 162 ILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL---KKLQKSDASNRQLWEQVRNNWSGSLQEKIQ 238 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhcchhHHHHHHHHHHHhhchhhHHHHH
Confidence 333344455556666555 54444444444444433333333222 11112222222233222222 777888
Q ss_pred HHHHHh
Q 021792 264 RLKVSL 269 (307)
Q Consensus 264 RLk~~~ 269 (307)
.+|..-
T Consensus 239 kvr~~W 244 (247)
T PF14661_consen 239 KVRELW 244 (247)
T ss_pred HHHHHH
Confidence 777653
No 392
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.88 E-value=2.6e+02 Score=28.01 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+.-+.+|+.++..|+.++..|..++..+..+...+..+..++
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666665555444
No 393
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.82 E-value=2.5e+02 Score=26.78 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQ---ADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~---a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
+-.|.|..+.+++|.+-. -.+..++..+.+.....+.|...|+..++.++.+..-- +..+++|++|...
T Consensus 138 ~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~ 209 (243)
T cd07666 138 LPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 394
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.79 E-value=1.7e+02 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+..|+..+..|+.++..|..++..|..+...+.+|-.-+|.|.+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777777777777777777777766643
No 395
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.44 E-value=2.2e+02 Score=28.63 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 021792 252 EGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 252 da~~E~L~~Ei~RLk~~~~~ 271 (307)
+.....|++|++-.+.+|..
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777666655543
No 396
>PRK14154 heat shock protein GrpE; Provisional
Probab=46.29 E-value=1.3e+02 Score=28.17 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.7
Q ss_pred CCCCCC
Q 021792 282 GTNSAA 287 (307)
Q Consensus 282 ~~~~~~ 287 (307)
|.-|+|
T Consensus 160 G~~FDP 165 (208)
T PRK14154 160 GDPFDP 165 (208)
T ss_pred CCCCCh
Confidence 444544
No 397
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.92 E-value=40 Score=25.85 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 021792 199 IAELERTVEYFQTLQADLGA 218 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~ 218 (307)
|.||+.++..|+.||+-|+.
T Consensus 23 I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 23 IAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 398
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=45.78 E-value=56 Score=31.49 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
-++.+..+|+++-+.|..+++.+... +.....|..||..||.-|
T Consensus 63 ~~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 63 EFLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555444332 233355666666666544
No 399
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=45.74 E-value=1.3e+02 Score=26.16 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=17.6
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 224 LQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 224 ~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
++.-..|..||.-||.-|..|+.-
T Consensus 84 dETI~~lk~EN~fLKeAl~s~QE~ 107 (126)
T PF13118_consen 84 DETIEALKNENRFLKEALYSMQEL 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467789999999988877543
No 400
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.68 E-value=2.4e+02 Score=25.79 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
-+..+..++..++.+...|.-+-..|.+.+..|..|-.+|..+....-++++-+-.+
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~ 143 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGL 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777778888878888888888888888888877777777766553
No 401
>PHA02557 22 prohead core protein; Provisional
Probab=45.65 E-value=1.1e+02 Score=29.93 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
++.|..+|..+++....|-.+|.+|+.+|..+.....|-++-
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t 184 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVT 184 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888899999999999999999999998873
No 402
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.56 E-value=2.4e+02 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 217 GARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 217 s~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
..+|..=++.+..|..-|..|+++|+.+. ..|++|..||++|+.-
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~-------~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQAR-------KANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33344444556777777777777766543 3466666666665543
No 403
>PRK12705 hypothetical protein; Provisional
Probab=45.52 E-value=3.9e+02 Score=28.19 Aligned_cols=10 Identities=0% Similarity=-0.097 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021792 198 YIAELERTVE 207 (307)
Q Consensus 198 Yi~ELE~kVq 207 (307)
|-.++|..++
T Consensus 64 ~~~~~e~e~~ 73 (508)
T PRK12705 64 ERNQQRQEAR 73 (508)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 404
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.44 E-value=2.3e+02 Score=26.57 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
|..+||...+.+....++|...+.-....+..-..-+.+|+..+.++.
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslk 129 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLK 129 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 556667666666666666666555443322222222334444444433
No 405
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.85 E-value=77 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 021792 253 GQYQYLKKEAERLKVSLAIS 272 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~~~ 272 (307)
.+|+.|+.|+.++|..+|..
T Consensus 29 ~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 29 DENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 45666666777777777653
No 406
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.75 E-value=2.4e+02 Score=28.93 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 228 VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
..+..+..+|..++..++++..--+...+.|++|+..|-
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444444333333334445556654443
No 407
>PLN02678 seryl-tRNA synthetase
Probab=44.41 E-value=1.4e+02 Score=30.93 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQ---QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~---~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+|-.+++.|+.+...++.+|..+.. +...|..|=++||.+|+.++.+.. .+.+.|.+...+|=.+...
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~---~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ---EAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCc
Confidence 45667778888888888888875432 335677777888888888886653 3445555666666666555
No 408
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.39 E-value=1.2e+02 Score=32.05 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 210 QTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 210 q~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
+..+..|..++....-....+..|..+|..||...++++.-.+...+.+...|.||.-
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666778888899999988888877776666666666766654
No 409
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.37 E-value=1.2e+02 Score=25.19 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.8
Q ss_pred ccchhhHH
Q 021792 177 NAETKMTK 184 (307)
Q Consensus 177 ~~DpKR~K 184 (307)
..||-=+|
T Consensus 52 ~~dp~~~k 59 (118)
T PF13815_consen 52 FVDPNFLK 59 (118)
T ss_pred CCCHHHHH
Confidence 35555444
No 410
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=44.25 E-value=1.4e+02 Score=34.36 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=33.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
...||+|.+.+..++..+++.-.....-..-++.+.+-+..+.+..+...+.|...|.+.|.
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665555444444444555555555555555555555555544443
No 411
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.22 E-value=81 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 021792 199 IAELERTVEYFQTLQADLGA 218 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~ 218 (307)
|..|.+|+..|+.++..|..
T Consensus 77 i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 412
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.18 E-value=1.2e+02 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~ 249 (307)
-|+.||..|+-||..|.|+..
T Consensus 391 plrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 345555555555555544433
No 413
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=44.08 E-value=33 Score=30.99 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
.+|-..+||.| .|+.|+ .+-..|......|+-|=+.||+.|
T Consensus 7 sklN~AIERna-lLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 7 SKLNQAIERNA-LLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHH-HHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHhH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888887 577777 455667888888888888898888
No 414
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=44.08 E-value=1.1e+02 Score=30.42 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+...+|+.+..=..--..+.+.|..||+.|..+..+
T Consensus 253 ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k 289 (307)
T PF15112_consen 253 EEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTK 289 (307)
T ss_pred hhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556777777788777776554
No 415
>PHA03162 hypothetical protein; Provisional
Probab=43.95 E-value=29 Score=30.52 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=15.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl 241 (307)
..|..+-..|.+||++||.+|
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444456699999999998
No 416
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=43.67 E-value=1.7e+02 Score=26.81 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 239 QKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 239 ~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
..++..+.+.....+.-+.++.+++.++....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 133 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQLNLR 133 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444443344444455556666655443
No 417
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.39 E-value=1.7e+02 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHhh
Q 021792 206 VEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
++.++.|++.|..++..|+...
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~ 35 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKEL 35 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 418
>PHA02109 hypothetical protein
Probab=43.36 E-value=57 Score=30.33 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGAR 219 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~ 219 (307)
|+..|.+||.+++.|--|.+.|..+
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~K 215 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHK 215 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555444444333
No 419
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.31 E-value=1.5e+02 Score=28.64 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 186 QFGQRSRVRK-LQYIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 186 qSA~RSR~RK-l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
++++|+|.=+ .+.+..++.++..|++|+..|...+....
T Consensus 45 ~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 45 ESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554433 23455666677777777777777666554
No 420
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=43.31 E-value=13 Score=33.21 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+..|...++.|.++-..|..++..|.+++..|.-|...-..++ +-.+.....|..||.+|+.+.-
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l-------q~se~~~~~Lpee~~~Lqfl~~ 74 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL-------QESEQEVAQLPEEVKHLQFLVS 74 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhcCcchHHHHHHHHH
Confidence 3445555666666666666666666555555554444333333 3333344455555665555543
No 421
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.14 E-value=33 Score=29.05 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
++..|.++...|..||+-||.+|+.|
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.71 E-value=2e+02 Score=30.78 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH-----------HH--HHHH
Q 021792 187 FGQRSRVRKLQYIA-----ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA-----------RV--QKEK 248 (307)
Q Consensus 187 SA~RSR~RKl~Yi~-----ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~-----------~l--~qq~ 248 (307)
|---+++|++.|+. |+|..-...|.+-..|.+-++.++ -+|..++.||. .+ +||.
T Consensus 161 s~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e-------~~nrh~~erlk~~~~s~~e~l~kl~~EqQl 233 (613)
T KOG0992|consen 161 SEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVE-------EENRHLKERLKIVEESRLESLGKLNSEQQL 233 (613)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44556777777764 445444444444444444444333 33333333332 12 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCC
Q 021792 249 LIMEGQYQYLKKEAERLKVSLAISPRSKVKTYFGTNSAA 287 (307)
Q Consensus 249 ~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~~~~~~~~~ 287 (307)
+.-.-....|+.++.||+.+..-+ -.+|||.+.+.
T Consensus 234 q~~~~ehkllee~~~rl~~~~s~V----egS~S~~~l~~ 268 (613)
T KOG0992|consen 234 QALIREHKLLEEHLERLHLQLSDV----EGSWSGQNLAL 268 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----ccccchhHHHH
Confidence 444445667999999999988753 45777776654
No 423
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.64 E-value=2.2e+02 Score=24.55 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
.|+..++.|..........+..+......|..++..|+
T Consensus 38 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 38 RLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 424
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=42.62 E-value=2.2e+02 Score=27.04 Aligned_cols=19 Identities=37% Similarity=0.314 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 021792 197 QYIAELERTVEYFQTLQAD 215 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~ 215 (307)
+-+++|-++++.+|.+.+.
T Consensus 46 ~dve~l~~e~E~~~k~l~d 64 (231)
T COG5493 46 QDVEELRKETEQRQKELAD 64 (231)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777664
No 425
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=42.44 E-value=2.8e+02 Score=29.01 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=37.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 222 LLLQQHVSLSMENSKLKQKIAR----------------------------VQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 222 ~L~~~~~~L~~EN~~LK~rl~~----------------------------l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.-++++..|...|.+|.-||.+ |+--...|+-....||.||.-||--+..
T Consensus 460 qCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 460 QCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457778899999999888764 3333456677888999999999876554
No 426
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.37 E-value=2.4e+02 Score=24.76 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=23.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 225 QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 225 ~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+....+..++..++.+|........-.+.....++.|..+++...
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~ 128 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666665555444444444444444444433
No 427
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=42.19 E-value=39 Score=29.09 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
..|..+-..|.+||++||.+|..-.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444445567999999999987654
No 428
>PHA03155 hypothetical protein; Provisional
Probab=42.13 E-value=2.1e+02 Score=24.72 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIAR-----------VQKEKLIMEGQ 254 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~-----------l~qq~~lkda~ 254 (307)
..|..+-..|.+||++||.+|.. -+.+++|--+.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v 55 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLV 55 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHH
Confidence 34445555679999999999844 35556665543
No 429
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=42.11 E-value=1.4e+02 Score=30.94 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
-.|.+|..++.+.++..+-.-..|..||..|..+.-
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554433
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.06 E-value=3.6e+02 Score=29.74 Aligned_cols=7 Identities=0% Similarity=0.026 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021792 261 EAERLKV 267 (307)
Q Consensus 261 Ei~RLk~ 267 (307)
++..++.
T Consensus 615 ~l~~~~~ 621 (782)
T PRK00409 615 RLNKANE 621 (782)
T ss_pred HHHHhhh
Confidence 3333333
No 431
>PRK10963 hypothetical protein; Provisional
Probab=42.02 E-value=78 Score=29.16 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
|+=.|++|+.|+.+|..|..+++.| ...-.+|..|-.++..+.....
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~L----i~~A~~Ne~l~~~~~~l~l~Ll 85 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLL----MEQAIANEDLFYRLLPLQSRLA 85 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999998876 3445678888888887776653
No 432
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=41.98 E-value=1.9e+02 Score=27.56 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYI----AELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi----~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
=+|+--.-+||.-.+ ..++++|++|+.+...|..+|+.+..
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~ 213 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKK 213 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456666667775444 34677777777777777777765543
No 433
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=41.94 E-value=81 Score=32.52 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 190 RSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 190 RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+...|=..=|.|||..++.+..+.. ...+|..|+.....+... +..++.-..++ ...+++++|++.|+...
T Consensus 315 ~~gWrT~~Ii~ELe~Ei~~~~~~~~-~~~~l~~L~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (448)
T PF05761_consen 315 RHGWRTAAIIPELEQEIEIWNSKKY-RFEELQELEELLEELQDH-------LDQLRSSSELR-PDISELRKERRELRREM 385 (448)
T ss_dssp HH-SEEEEE-TTHHHHHHHHHHTHH-HHHHHHHHHHHCHHHHCH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEehhhhhhhhhhhhcch-hhhHHHHHHHHHHHHHHH-------hcccccchhhH-HHHHHHHHHHHHHHHHH
Confidence 3445555668899998888766553 333355554443333322 22222222222 34456888888888888
Q ss_pred cCC
Q 021792 270 AIS 272 (307)
Q Consensus 270 ~~~ 272 (307)
.+.
T Consensus 386 ~~~ 388 (448)
T PF05761_consen 386 KEL 388 (448)
T ss_dssp HCT
T ss_pred hhh
Confidence 873
No 434
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=41.92 E-value=2e+02 Score=29.25 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHH--------------hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQ--------------ADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~--------------a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
++|||.||+....-+ -+|+-.|..+..+...-.-||.++-..++.+.+-+-+-.+.++.||.+|.
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777644333 23334444444444444445555544444444444444444555555553
No 435
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=41.81 E-value=87 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.+|..|+++.++|++...-...+|.
T Consensus 75 ~~l~kL~Rr~~tL~ak~EL~~~RL~ 99 (153)
T PF08287_consen 75 KHLEKLQRREETLKAKCELQQGRLS 99 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777666654444443
No 436
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.78 E-value=4.3e+02 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
++..++.....+..++.+|+.+++
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 437
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=41.53 E-value=69 Score=34.74 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 233 ENSKLKQKIARVQKEKLIMEGQYQYLK 259 (307)
Q Consensus 233 EN~~LK~rl~~l~qq~~lkda~~E~L~ 259 (307)
|=..||..++.||.++++-.-+.-.+.
T Consensus 34 el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 34 ELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777666544444333
No 438
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=41.44 E-value=2.6e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 236 KLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 236 ~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..+|+.|.+-..-+....+.|.++++.|=.-|..
T Consensus 123 ~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ 158 (174)
T PF07426_consen 123 ELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNK 158 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888889999999888776654
No 439
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=41.38 E-value=1.6e+02 Score=30.59 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=10.6
Q ss_pred cccCCCCCCcCCCCchhH
Q 021792 39 HKSSSQSSILEDQPAWLD 56 (307)
Q Consensus 39 ~r~sS~~~~~eeqPSWlD 56 (307)
...++-++...-.+||.-
T Consensus 27 ~e~ss~s~~~~~~~s~~~ 44 (511)
T PF09787_consen 27 MEVSSWSSEPVGSISWSS 44 (511)
T ss_pred cceeecCCCCCCCccccc
Confidence 555555556666666644
No 440
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.27 E-value=1.7e+02 Score=22.78 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSM--------ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~--------EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
|.+++.+|..|......|..+|..+......+.. +-.....+|..+.+....-..-...+++-+.+|
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666665555444333322 111134455555554444444444555555544
No 441
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=1.8e+02 Score=30.68 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHH----HHhhhhhh-------hhh------HHHHHH
Q 021792 185 RQFGQRSRVRKL-------QYIAELERTVEYFQTLQADLGARVALL----LQQHVSLS-------MEN------SKLKQK 240 (307)
Q Consensus 185 RqSA~RSR~RKl-------~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L----~~~~~~L~-------~EN------~~LK~r 240 (307)
++-+.+-+.|=. .|++.|+.+|..++....+|..+..-. .+....|. .|- .+|.+.
T Consensus 274 lE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~Iqeleqd 353 (521)
T KOG1937|consen 274 LEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQD 353 (521)
T ss_pred HHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 566666666654 577777777777777666666554321 11111111 121 233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 241 IARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 241 l~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
|+++.++..-++-+++.|..|.++|
T Consensus 354 L~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 354 LEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 5555556666666777777777665
No 442
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.24 E-value=2.1e+02 Score=28.85 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhh
Q 021792 206 VEYFQTLQADLGARVALLLQQHVS 229 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~ 229 (307)
+..++.+...|..+|..++.+...
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444433
No 443
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.18 E-value=1.3e+02 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.|-+-.++.||.--..| +.....|++|+..|+.+|..+
T Consensus 98 QQ~~~f~kiRsel~S~e-~sEF~~lr~e~EklkndlEk~ 135 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIE-RSEFANLRAENEKLKNDLEKL 135 (220)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555322221 233444555555555554443
No 444
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.10 E-value=3.9e+02 Score=28.21 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 186 QFGQRSRVRKLQYIAELER-TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~-kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
+|-+...+ +|+.++|. +++.....-..+..++..|.++...+..+-+.+-.+++.+.-...--.-+-..+++|=+-
T Consensus 331 eSqr~y~e---~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 331 ESQRKYYE---QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 021792 265 LKV 267 (307)
Q Consensus 265 Lk~ 267 (307)
|+.
T Consensus 408 l~k 410 (493)
T KOG0804|consen 408 LIK 410 (493)
T ss_pred HHh
No 445
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.08 E-value=1.9e+02 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
...+|..|+++-..+...|-+|..-+..|+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666544
No 446
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.86 E-value=2e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
.|.+|+.++..|+.++..|..++..+..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~A 65 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQA 65 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555544433
No 447
>PHA03011 hypothetical protein; Provisional
Probab=40.83 E-value=1.6e+02 Score=25.08 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
|..+..+-.....|.+|-..|.++...+.+|=+.|.+-++.-..+-++-.|+.+.||+-|-.|
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 455667777778889999999999999999999999999999999999999999999888654
No 448
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=40.80 E-value=76 Score=29.54 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.....++.|++..-.+|..|+.....|..||.+||+-.-.|.++
T Consensus 101 yta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDee 144 (195)
T PF10226_consen 101 YTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEE 144 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
No 449
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=40.78 E-value=78 Score=31.95 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=26.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAE------LERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~E------LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
.||++.+| .-|+.|+.+..+ +...|..||+++-.|..-...++.....|
T Consensus 69 ~ep~~k~~----~~kl~kl~~~~d~~dl~~~~~~V~~LQ~~ir~l~~~~~~~~~~~~~L 123 (457)
T PF10351_consen 69 VEPEKKER----SEKLEKLMFSSDFSDLEGLDDRVVSLQNRIRQLIEIERELEFRDKLL 123 (457)
T ss_pred CCchhhHH----HHHHHhheehhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45654433 345666666544 44566666666666555555554444444
No 450
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.78 E-value=1.8e+02 Score=22.81 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
+++-+..+..-+.|...++...++...|.+.++.|-.++..|..+.
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777788888888888887777654
No 451
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=86 Score=27.02 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYF 209 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~L 209 (307)
=++|.++=.+|..-..+|
T Consensus 26 ~~qk~~le~qL~E~~~al 43 (119)
T COG1382 26 ILQKQQLEAQLKEIEKAL 43 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 452
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=40.72 E-value=2.4e+02 Score=29.07 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 231 SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 231 ~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
...+.+++.+++.+..+...-..-.+-|+..+++|+.....
T Consensus 192 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 192 NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45677788888888877777777778888889999887765
No 453
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=40.70 E-value=1.1e+02 Score=33.36 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 248 KLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 248 ~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+.|-+...+.+.+|+.||+.+-..
T Consensus 259 ~~~~~~~~~~~~~e~~~~~~~~~~ 282 (775)
T TIGR00763 259 LKLPEEVKKVIEKELTKLSLLEPS 282 (775)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCC
Confidence 336777889999999999987655
No 454
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.56 E-value=1.2e+02 Score=30.08 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=25.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 227 HVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 227 ~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
-..|-+||+-|++||..++.+.-+ ++.=|...|.++.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l-------~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKEL-------LKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 567889999999999988877644 3344444555444
No 455
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=40.55 E-value=1.2e+02 Score=34.83 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=19.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.++......-.++..+.+....+..++.+|+.+|+.+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1123)
T PRK11448 167 QSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEK 206 (1123)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333445566666666666655433
No 456
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.52 E-value=33 Score=31.93 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.+||.+|..|+.|++.|+++|..|
T Consensus 188 ~dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999998865
No 457
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.51 E-value=1.3e+02 Score=29.28 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 239 QKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 239 ~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.+++.|+.+..+.+..++.+-.-.+..|...
T Consensus 278 ~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444433
No 458
>PRK10698 phage shock protein PspA; Provisional
Probab=40.48 E-value=3e+02 Score=25.48 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 201 ELERTVEYFQTLQADLGARVALL-LQQHVSLS----MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L-~~~~~~L~----~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.||+++..++.++..+..+-... +.-...|- .+......++..|+.+..-.+...+.|+..+.+|+.-+.+
T Consensus 56 ~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 56 QLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544443322 22222222 2233445566666666666666777777777777665543
No 459
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.31 E-value=1.1e+02 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
..-+.++|+++...+.|+-.+..++..|.++
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555443
No 460
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.29 E-value=5.2e+02 Score=30.95 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQ 213 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~ 213 (307)
.||+.++..|+.+.
T Consensus 317 ~ELe~rL~kLEkQa 330 (1486)
T PRK04863 317 AELNEAESDLEQDY 330 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 461
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.19 E-value=3.3e+02 Score=29.68 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
.+++++++.|+........+|..|++.-..|..+..+|+..+
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~ 264 (670)
T KOG0239|consen 223 ADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQV 264 (670)
T ss_pred hhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444444444444444444444443333
No 462
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.12 E-value=2.6e+02 Score=30.80 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
..||..||.++..|+.....+..+++.+++-...+...=.++++.+.-
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~ 570 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLED 570 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999998888888888776555444443344433333
No 463
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.90 E-value=3.4e+02 Score=31.93 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021792 181 KMTK--RQFGQRSRVRKL--QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQ 256 (307)
Q Consensus 181 KR~K--RqSA~RSR~RKl--~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E 256 (307)
.+.| +...+| +.+++ +-+.+.+.++..+.++...|++++..++.+...+.-.|..+...++-+.+...--++...
T Consensus 475 ~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 475 EKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAEL 553 (1317)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHH
Q 021792 257 YLKKEAERLKVS 268 (307)
Q Consensus 257 ~L~~Ei~RLk~~ 268 (307)
.+..|+.-.+.+
T Consensus 554 d~~~e~~~~~kl 565 (1317)
T KOG0612|consen 554 DMRAESEDAGKL 565 (1317)
T ss_pred hhhhhHHHHhhH
No 464
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=39.76 E-value=2.4e+02 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHV 228 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~ 228 (307)
++.++..++..|+.-......+|..+.+.+.
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~ 82 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQ 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665544333
No 465
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.65 E-value=95 Score=28.78 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
+.|-.++..|.+++..|++.+.-+.+|=++|-.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 466
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.59 E-value=1.5e+02 Score=27.16 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=11.1
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHH
Q 021792 225 QQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 225 ~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+....+..+-.+|+..|+..+++
T Consensus 153 ~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 153 KKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444555555555554443
No 467
>PLN02939 transferase, transferring glycosyl groups
Probab=39.37 E-value=3.3e+02 Score=31.17 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------------------HHHhhhh
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVAL-----------------------------------LLQQHVS 229 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~-----------------------------------L~~~~~~ 229 (307)
|.-|---=++=+..-++|..+|+.|+...++--+++.+ |.++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (977)
T PLN02939 151 RLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDV 230 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHH
Confidence 55565555666777788888888888777662222211 4566677
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 021792 230 LSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 230 L~~EN~~LK~rl~~l~qq~ 248 (307)
|..||.-||..|+.|..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 8888998988888887654
No 468
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=39.33 E-value=2e+02 Score=24.70 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
+.+..+..+++.+.++.+.|...-.........+...+.+|-.|+=.+.....+-.--.-+|..|-+.|
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L 112 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEEL 112 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 455666666666666666664444444445555666666666655444444444333333333333333
No 469
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=39.24 E-value=1.5e+02 Score=29.24 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 244 VQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 244 l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
|.|+..-..-..+.|+++.+.++++.|-
T Consensus 283 LQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 283 LQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455789999999999999986
No 470
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=39.17 E-value=1.3e+02 Score=31.54 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=43.0
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021792 210 QTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPR 274 (307)
Q Consensus 210 q~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~ 274 (307)
|.--..=+.=|.-|+.....-+.||.+|+.+++.|+. .|+.|-.-++-|..+.+++.|
T Consensus 264 QESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-------~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 264 QESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-------SNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred HHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHhhccc
Confidence 3333333445667777777889999999999988864 577787888888888888765
No 471
>PRK10963 hypothetical protein; Provisional
Probab=39.15 E-value=94 Score=28.63 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 021792 201 ELERTVEYF 209 (307)
Q Consensus 201 ELE~kVq~L 209 (307)
+||.++..|
T Consensus 55 ~Le~~l~~L 63 (223)
T PRK10963 55 VLEEEMTLL 63 (223)
T ss_pred HHHHHHHHH
Confidence 344444443
No 472
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.01 E-value=4.4e+02 Score=30.59 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 182 MTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVA---LLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 182 R~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~---~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
+.+....+.-+.++..-|.+|+.++..+..+...|...+. .|+.+-..|..++..+...|+.+..+..--...-+.+
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~ 921 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHHHH
Q 021792 259 KKEAERLKV 267 (307)
Q Consensus 259 ~~Ei~RLk~ 267 (307)
..+..+++.
T Consensus 922 ~~~~~~~~~ 930 (1311)
T TIGR00606 922 QQEKEELIS 930 (1311)
T ss_pred HHHHHHHHH
No 473
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=38.97 E-value=3.3e+02 Score=30.13 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 179 ETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 179 DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
++++. +..=.+-|++-...+-.|..+--.+....+.|..+|+.|++.-..-..|+..|..-|+.-.-+..+-....+.|
T Consensus 300 ~~~K~-q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktL 378 (739)
T PF07111_consen 300 FSRKC-QQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTL 378 (739)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 44433 23333334444444444433333334444455555555555555555555555444444444444444433333
Q ss_pred HHHH
Q 021792 259 KKEA 262 (307)
Q Consensus 259 ~~Ei 262 (307)
..|.
T Consensus 379 Q~EL 382 (739)
T PF07111_consen 379 QAEL 382 (739)
T ss_pred HHHH
Confidence 3333
No 474
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.92 E-value=1.4e+02 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
.|..-|..|...+..|+.++..+..+|
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 475
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.88 E-value=3.1e+02 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
..+++.+++.|+.++..|..++..|+.+-
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677788888888888888888887765
No 476
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=38.43 E-value=12 Score=31.24 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh---------hhhhhHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVS---------LSMENSKLKQKI 241 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~---------L~~EN~~LK~rl 241 (307)
+.+-.+-+.+||..++.|+.+...|..++..|+++... -...-+.||.+|
T Consensus 8 k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkL 66 (118)
T PF08286_consen 8 KFRLAKELSDLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKL 66 (118)
T ss_dssp -----------------------------------HT------CCCCCHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHH
No 477
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.38 E-value=4e+02 Score=30.35 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
++++..++.|+.|...|-.++..|+.....+....+..+.+|+.+.
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l 535 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLL 535 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666654333333333444444443
No 478
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.37 E-value=3.6e+02 Score=25.74 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 232 MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 232 ~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
..-..|+.+|+.+.+.+ |+.++.+++|+.|...
T Consensus 174 e~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 174 EERPKVPTDVEKCQDRV---ECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33456677788887777 8899999999988643
No 479
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=38.27 E-value=81 Score=32.99 Aligned_cols=50 Identities=34% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHHhhhhhhhhhHHHHHH-------------HHHHHHHHH------HHHHHHHHHHHHHHHHHHHhc
Q 021792 221 ALLLQQHVSLSMENSKLKQK-------------IARVQKEKL------IMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~r-------------l~~l~qq~~------lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.++.++...|+.||+-||.. |+.+..+.. +.-..-|+|-+||+.||.-+.
T Consensus 171 e~~~ee~~sl~~e~KlLk~~~en~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 171 EFIDEEYVSLMHEHKLLKEKYENHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred HHhhhHhhhhhhHhhhhhhhccCchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHH
Confidence 45566777888888887652 223333321 112367899999999998777
No 480
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.11 E-value=2.4e+02 Score=31.89 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
.+|+.||+.....+++.+.+|..+..++..+.+|-.+|++||+.+
T Consensus 454 qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 454 QQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444445544444444443
No 481
>smart00340 HALZ homeobox associated leucin zipper.
Probab=38.03 E-value=53 Score=23.73 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=14.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
.+|.+=+..|+.||+.|+..++.|
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777776665544443
No 482
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=37.98 E-value=2.4e+02 Score=23.63 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
-|-|++++.|+.-...+...|.....-......=|..|-..|.++..+..+-+-.-+...+-|..+|.
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~Km 74 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKM 74 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 37788999999999999988887766555566667777777888777765555555555555555554
No 483
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.94 E-value=5.3e+02 Score=28.02 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
++.+.+-|..=.+.|++|...|+.|..++..+-.+++.-+........+=..++.|--.|+...+-.+.....|.+=++|
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555667888888888888887777777776555555555555555555444444444444443333333333
No 484
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=37.87 E-value=4.9e+02 Score=27.34 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVA 221 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~ 221 (307)
.++.++.++..+..+++
T Consensus 68 ~l~~~~~~~~~~~~~~~ 84 (475)
T PRK10361 68 EVRSLQSINTSLEADLR 84 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444433333333
No 485
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=37.84 E-value=2.8e+02 Score=24.26 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH------------------
Q 021792 193 VRKLQYIAELERTV--EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME------------------ 252 (307)
Q Consensus 193 ~RKl~Yi~ELE~kV--q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd------------------ 252 (307)
+|=..|-.+|=.|| +.+..++..+..=+..-..+-..|..++..|...|.+|+++..-+.
T Consensus 26 L~v~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQP 105 (126)
T PF07028_consen 26 LRVTCYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQP 105 (126)
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCc
Q ss_pred --------HHHHHHHHHHHH
Q 021792 253 --------GQYQYLKKEAER 264 (307)
Q Consensus 253 --------a~~E~L~~Ei~R 264 (307)
++++.|+++|++
T Consensus 106 K~IEkQte~LteEL~kkV~~ 125 (126)
T PF07028_consen 106 KFIEKQTEALTEELTKKVDR 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhc
No 486
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.81 E-value=3.9e+02 Score=27.72 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred ccchhhHH--HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHH----HHHHHHHH
Q 021792 177 NAETKMTK--RQFGQRSRVRK------LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSK----LKQKIARV 244 (307)
Q Consensus 177 ~~DpKR~K--RqSA~RSR~RK------l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~----LK~rl~~l 244 (307)
+.|.|.+| .+--+++=..| ..-|.+|+.+...|+.+.-.|.++...+.++--.....+.. |+..++.+
T Consensus 1 mld~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l 80 (429)
T COG0172 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKEL 80 (429)
T ss_pred CchHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021792 245 QKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 245 ~qq~~lkda~~E~L~~Ei~RL 265 (307)
..+..=.+..-+++++|++.+
T Consensus 81 ~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 81 KEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHhccHHHHHHHHHHHHH
No 487
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.77 E-value=3.7e+02 Score=28.34 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+..|++ +.-+.-.|++...+...++.+-++...|..+++.+...-+.+++.++-.+.=.+.+.+|.+.+|.+
T Consensus 333 qr~y~e--~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 333 QRKYYE--QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred HHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK12704 phosphodiesterase; Provisional
Probab=37.65 E-value=5.1e+02 Score=27.23 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 181 KMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKK 260 (307)
Q Consensus 181 KR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~ 260 (307)
|.++.+.-..-+.+|...-.++..+=+.|+..-..|..+...|.+....|.....+|..+-+.|.+...--+...+.+.+
T Consensus 56 ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcCCCCC
Q 021792 261 EAERLKVSLAISPRS 275 (307)
Q Consensus 261 Ei~RLk~~~~~~~~~ 275 (307)
-++.....+-..++.
T Consensus 136 ~~~~~~~~l~~~a~l 150 (520)
T PRK12704 136 LIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHhCC
No 489
>PRK05255 hypothetical protein; Provisional
Probab=37.58 E-value=2.5e+02 Score=25.52 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK--EKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q--q~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.|-|.+|||.-|=|.+ ....+...|..+...+..-+..--.|-.=-..|-. ..-|.+.+.+.=..++|+||++
T Consensus 68 A~RRqlqyIGKLmR~~-----d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e~~~~~P~~DrQ~LRqL 142 (171)
T PRK05255 68 ARRRQLQYIGKLMRNE-----DVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQL 142 (171)
T ss_pred HHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHH
Q ss_pred h
Q 021792 269 L 269 (307)
Q Consensus 269 ~ 269 (307)
.
T Consensus 143 i 143 (171)
T PRK05255 143 I 143 (171)
T ss_pred H
No 490
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=37.53 E-value=2.5e+02 Score=30.02 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE---KLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq---~~lkda~~E~L~~Ei~RL 265 (307)
.+-|.+.|.+|..|...+.....++..|+........+=..++..|+.++.+ .+++.+-+..|.+|++.|
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~L 94 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENL 94 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
No 491
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=37.49 E-value=1.2e+02 Score=25.37 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQA-DLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a-~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
|..|+.+|-..|..||.++. -|-++|..-.........+.. .|..++|+
T Consensus 52 K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~~~~~~-------------------~e~~eeen 101 (103)
T PF08738_consen 52 KDTYLSELRAQLTTLQDDINEFLTERMEEDKARDAQAGEEKS-------------------DEAKEEEN 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh-------------------HHHHHHHh
No 492
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=37.45 E-value=2.4e+02 Score=26.62 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
...++.++..++.+...+...+...+-....+...-..+...|..+..+.....+..+..+++.+|.+.++..
T Consensus 57 ~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 57 LDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 493
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.40 E-value=2.1e+02 Score=31.46 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
++++--+.+||.+--.|.+|+++|+-+++-|+++...-...-+.-..-|+.+. +...-+..+|.|..|
T Consensus 163 QqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye 230 (861)
T KOG1899|consen 163 QQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYE 230 (861)
T ss_pred HHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
No 494
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.39 E-value=1.8e+02 Score=22.07 Aligned_cols=52 Identities=8% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
+.+++.++..+++....+..++..|++....+..+=..+-.+|..+......
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.27 E-value=3.2e+02 Score=32.09 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLL-QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~-~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
|.+-..++|.-...|+.++..+..+.+.|+ ++...+..+.++..+++.-.+.+.+--.++.-.+++|.+-++.
T Consensus 456 ~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 456 KCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK01156 chromosome segregation protein; Provisional
Probab=37.11 E-value=3.4e+02 Score=29.71 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
..+.+++.....++.+...|..++..+......+..+-..|+.+++.+.....-.+.+..++.. +.+++.++.
T Consensus 674 ~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~-l~~~r~~l~ 746 (895)
T PRK01156 674 SRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGD-LKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
No 497
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.69 E-value=3.8e+02 Score=29.66 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------------------------------------------H
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLL----------------------------------------------Q 225 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~----------------------------------------------~ 225 (307)
..|+.-|...++..++.++.+..-|...+..+. .
T Consensus 351 ~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~ 430 (805)
T PRK05560 351 EHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGL 430 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 021792 226 QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKT 279 (307)
Q Consensus 226 ~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~ 279 (307)
+...|..|-.+|+.+|+.++.-.--.+.+.+.+..|+..+|..+|. .|||
T Consensus 431 e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~----~RRT 480 (805)
T PRK05560 431 ERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGD----PRRT 480 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC----CCce
No 498
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.68 E-value=3.4e+02 Score=25.41 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
|...|--|-..+..+.++......++..|......-..|=......|+....++.+..---..|+.||..||....
T Consensus 29 K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 29 KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
No 499
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=36.39 E-value=1.2e+02 Score=31.94 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHH---hhhhhhhhhHHHHHHHHHHHHH
Q 021792 180 TKM-TKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARV---ALLLQ---QHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 180 pKR-~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l---~~L~~---~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+|+ .++..+.+-+.++++-+.+||.++..|+.+.+.|..++ ..... ....|..|=.+++.+|+.+..+
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (635)
T PRK11147 550 PKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFER 624 (635)
T ss_pred cccchhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=36.38 E-value=4.3e+02 Score=26.07 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLL----QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~----~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
|-+|||.+++.|++.+..|..+...|. ..+..+...-.+--+++..|+.+.---.|+-|.|.+=|.-|-++
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!