Query 021792
Match_columns 307
No_of_seqs 146 out of 199
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.1 2E-10 6.8E-15 83.9 6.7 43 185-227 10-52 (55)
2 2dgc_A Protein (GCN4); basic d 98.8 1E-08 3.5E-13 76.7 7.2 49 178-226 10-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 98.8 2E-08 6.9E-13 74.0 8.3 50 185-241 10-59 (61)
4 1jnm_A Proto-oncogene C-JUN; B 98.7 2.6E-08 8.9E-13 73.7 7.6 51 180-230 4-55 (62)
5 2wt7_A Proto-oncogene protein 98.7 6.7E-08 2.3E-12 71.9 8.0 45 185-229 11-55 (63)
6 1gd2_E Transcription factor PA 98.5 1.9E-07 6.7E-12 71.3 7.6 54 185-238 17-70 (70)
7 1ci6_A Transcription factor AT 98.3 1.7E-06 5.7E-11 64.5 7.3 54 181-241 6-60 (63)
8 1gu4_A CAAT/enhancer binding p 97.5 0.00031 1.1E-08 54.6 8.0 42 185-226 24-65 (78)
9 2oqq_A Transcription factor HY 97.5 0.00024 8.2E-09 49.3 6.3 40 196-242 2-41 (42)
10 1hjb_A Ccaat/enhancer binding 97.4 0.00053 1.8E-08 54.3 8.0 39 185-223 24-62 (87)
11 3a5t_A Transcription factor MA 96.7 0.00016 5.6E-09 59.3 -0.9 45 185-229 46-90 (107)
12 2wt7_B Transcription factor MA 96.6 0.0073 2.5E-07 48.1 8.0 53 185-244 36-88 (90)
13 2jee_A YIIU; FTSZ, septum, coi 95.6 0.11 3.8E-06 40.6 9.9 67 198-271 7-77 (81)
14 2jee_A YIIU; FTSZ, septum, coi 95.5 0.18 6.2E-06 39.4 10.7 39 202-240 25-63 (81)
15 3ol1_A Vimentin; structural ge 95.2 0.31 1E-05 39.9 11.7 76 196-271 19-108 (119)
16 3s4r_A Vimentin; alpha-helix, 94.8 0.27 9.2E-06 38.9 10.0 64 204-267 23-91 (93)
17 2w6a_A ARF GTPase-activating p 94.6 0.063 2.1E-06 39.9 5.4 40 199-238 22-61 (63)
18 3o0z_A RHO-associated protein 94.4 0.5 1.7E-05 41.4 11.6 59 187-252 80-138 (168)
19 3hnw_A Uncharacterized protein 94.0 0.36 1.2E-05 40.7 9.8 59 195-253 73-131 (138)
20 3swy_A Cyclic nucleotide-gated 92.7 0.44 1.5E-05 33.5 6.9 44 201-247 2-45 (46)
21 3a7p_A Autophagy protein 16; c 91.9 1.1 3.9E-05 38.6 9.9 55 202-258 94-148 (152)
22 3oja_B Anopheles plasmodium-re 91.6 1.2 4E-05 43.6 11.1 67 200-266 505-571 (597)
23 3cvf_A Homer-3, homer protein 91.6 0.35 1.2E-05 37.6 5.7 41 229-269 17-57 (79)
24 3swk_A Vimentin; cytoskeleton, 91.4 0.72 2.5E-05 35.9 7.5 70 199-268 2-85 (86)
25 3efg_A Protein SLYX homolog; x 91.3 0.33 1.1E-05 37.4 5.3 51 197-247 14-64 (78)
26 3oja_B Anopheles plasmodium-re 91.3 1.7 5.9E-05 42.4 11.8 80 194-273 506-585 (597)
27 1go4_E MAD1 (mitotic arrest de 90.9 1.5 5.3E-05 35.3 9.1 19 253-271 75-93 (100)
28 3swf_A CGMP-gated cation chann 90.8 0.64 2.2E-05 35.8 6.4 47 201-250 4-50 (74)
29 2oxj_A Hybrid alpha/beta pepti 89.3 0.63 2.2E-05 30.8 4.5 19 253-271 15-33 (34)
30 3m48_A General control protein 89.2 0.41 1.4E-05 31.6 3.6 26 199-224 2-27 (33)
31 2dfs_A Myosin-5A; myosin-V, in 88.9 3.2 0.00011 45.1 12.4 19 204-222 984-1002(1080)
32 1deb_A APC protein, adenomatou 88.4 2.1 7.2E-05 30.8 7.2 45 200-244 6-50 (54)
33 2oxj_A Hybrid alpha/beta pepti 88.0 0.86 2.9E-05 30.2 4.5 26 199-224 3-28 (34)
34 3m48_A General control protein 87.9 0.7 2.4E-05 30.5 4.1 18 254-271 15-32 (33)
35 3o0z_A RHO-associated protein 87.8 13 0.00046 32.4 13.7 85 183-269 22-113 (168)
36 1gu4_A CAAT/enhancer binding p 87.6 3.1 0.00011 32.0 8.3 37 223-273 41-77 (78)
37 3cve_A Homer protein homolog 1 87.6 2.1 7.2E-05 32.7 7.2 43 202-244 5-47 (72)
38 3mq9_A Bone marrow stromal ant 87.5 4 0.00014 39.0 11.0 28 239-266 443-470 (471)
39 2oqq_A Transcription factor HY 87.1 0.7 2.4E-05 32.0 3.9 23 198-220 18-40 (42)
40 3s9g_A Protein hexim1; cyclin 86.9 2.6 8.9E-05 34.1 7.7 49 191-239 31-86 (104)
41 3m9b_A Proteasome-associated A 86.8 0.64 2.2E-05 43.1 4.7 41 220-267 56-96 (251)
42 3c3f_A Alpha/beta peptide with 86.6 1.1 3.8E-05 29.7 4.4 18 254-271 16-33 (34)
43 3m0d_C TNF receptor-associated 86.6 6.3 0.00021 28.9 9.2 29 195-223 4-32 (65)
44 3c3g_A Alpha/beta peptide with 86.1 1.3 4.4E-05 29.2 4.5 26 199-224 2-27 (33)
45 1hjb_A Ccaat/enhancer binding 85.9 2.6 9E-05 33.0 7.2 38 223-274 41-78 (87)
46 2wq1_A General control protein 85.4 1.5 5E-05 28.9 4.5 26 199-224 2-27 (33)
47 3c3f_A Alpha/beta peptide with 85.4 1.4 4.9E-05 29.1 4.5 26 199-224 3-28 (34)
48 3hnw_A Uncharacterized protein 85.3 6.1 0.00021 33.1 9.7 46 199-244 84-129 (138)
49 2wt7_A Proto-oncogene protein 85.3 2.1 7.2E-05 31.2 6.0 29 219-247 24-52 (63)
50 3qh9_A Liprin-beta-2; coiled-c 85.1 8.1 0.00028 30.1 9.5 60 203-262 18-77 (81)
51 1nkp_B MAX protein, MYC proto- 85.0 1.4 4.9E-05 33.3 5.2 31 196-226 46-76 (83)
52 1kd8_B GABH BLL, GCN4 acid bas 84.4 1.7 5.7E-05 29.1 4.5 27 199-225 3-29 (36)
53 3a7o_A Autophagy protein 16; c 84.1 3.1 0.00011 31.8 6.6 47 201-247 29-75 (75)
54 2dfs_A Myosin-5A; myosin-V, in 83.9 6 0.0002 43.0 11.3 38 207-244 980-1017(1080)
55 4etp_A Kinesin-like protein KA 83.9 3 0.0001 40.4 8.1 54 215-268 7-60 (403)
56 3c3g_A Alpha/beta peptide with 83.6 1.8 6.3E-05 28.4 4.4 17 255-271 16-32 (33)
57 3cvf_A Homer-3, homer protein 83.1 7.7 0.00026 30.0 8.6 53 199-251 8-60 (79)
58 1uo4_A General control protein 83.1 1.4 4.9E-05 29.2 3.8 26 199-224 3-28 (34)
59 2bni_A General control protein 83.0 1.5 5.3E-05 29.0 3.9 18 254-271 16-33 (34)
60 3cve_A Homer protein homolog 1 82.9 14 0.00047 28.1 10.4 48 223-270 5-52 (72)
61 1kd8_A GABH AIV, GCN4 acid bas 82.6 1.5 5.2E-05 29.3 3.8 27 199-225 3-29 (36)
62 2dgc_A Protein (GCN4); basic d 82.5 1.7 5.9E-05 31.9 4.5 19 252-270 43-61 (63)
63 2w83_C C-JUN-amino-terminal ki 82.3 5.5 0.00019 30.8 7.4 61 204-264 9-76 (77)
64 2hy6_A General control protein 82.2 1.8 6.2E-05 28.7 4.0 18 254-271 16-33 (34)
65 2j5u_A MREC protein; bacterial 82.2 1.1 3.9E-05 40.8 4.2 42 228-273 22-63 (255)
66 3he5_A Synzip1; heterodimeric 82.0 6.1 0.00021 27.4 6.8 18 252-269 30-47 (49)
67 3a7p_A Autophagy protein 16; c 81.8 11 0.00039 32.4 10.0 49 198-246 69-124 (152)
68 2wq1_A General control protein 81.7 2.5 8.7E-05 27.8 4.5 17 255-271 16-32 (33)
69 4ati_A MITF, microphthalmia-as 81.3 0.64 2.2E-05 38.1 2.0 44 196-250 73-116 (118)
70 3mq7_A Bone marrow stromal ant 81.3 5.4 0.00018 33.2 7.5 36 235-270 74-109 (121)
71 2bni_A General control protein 81.2 1.9 6.4E-05 28.6 3.8 26 199-224 3-28 (34)
72 1f5n_A Interferon-induced guan 80.9 16 0.00056 37.1 12.6 82 182-268 493-582 (592)
73 4emc_A Monopolin complex subun 80.9 7.4 0.00025 34.7 8.8 41 205-252 21-61 (190)
74 2hy6_A General control protein 80.4 2.1 7E-05 28.4 3.8 27 199-225 3-29 (34)
75 1uo4_A General control protein 80.3 2.6 8.9E-05 27.9 4.2 18 254-271 16-33 (34)
76 3na7_A HP0958; flagellar bioge 80.2 22 0.00076 31.8 12.0 68 197-266 32-103 (256)
77 3vkg_A Dynein heavy chain, cyt 80.2 11 0.00038 45.6 12.4 66 201-266 2025-2090(3245)
78 3na7_A HP0958; flagellar bioge 80.1 33 0.0011 30.7 13.7 11 255-265 152-162 (256)
79 2no2_A HIP-I, huntingtin-inter 80.1 16 0.00054 29.4 9.8 21 190-210 22-42 (107)
80 3u06_A Protein claret segregat 80.0 4.3 0.00015 39.5 7.6 54 214-267 6-59 (412)
81 2ocy_A RAB guanine nucleotide 80.0 13 0.00043 32.1 9.7 68 202-271 77-147 (154)
82 1fmh_A General control protein 79.7 3.6 0.00012 26.5 4.7 29 199-227 3-31 (33)
83 1i84_S Smooth muscle myosin he 79.5 5.2 0.00018 43.5 8.8 40 199-238 859-898 (1184)
84 3ol1_A Vimentin; structural ge 78.7 15 0.00052 29.7 9.5 60 210-269 19-78 (119)
85 1ci6_A Transcription factor AT 78.6 3.7 0.00013 30.0 5.2 29 219-247 24-52 (63)
86 1am9_A Srebp-1A, protein (ster 78.5 3.2 0.00011 31.6 5.0 25 197-221 50-74 (82)
87 2xzr_A Immunoglobulin-binding 78.4 25 0.00086 28.5 10.5 64 207-270 41-107 (114)
88 1kd8_B GABH BLL, GCN4 acid bas 78.2 2.5 8.5E-05 28.3 3.7 17 255-271 17-33 (36)
89 1wle_A Seryl-tRNA synthetase; 78.2 32 0.0011 34.3 13.5 89 176-264 39-148 (501)
90 1zme_C Proline utilization tra 77.9 1.7 5.9E-05 31.0 3.2 25 197-221 44-68 (70)
91 3q8t_A Beclin-1; autophagy, AT 77.4 9.7 0.00033 30.0 7.7 71 196-266 24-94 (96)
92 2v4h_A NF-kappa-B essential mo 77.2 23 0.00079 29.0 10.0 70 178-247 26-105 (110)
93 4ath_A MITF, microphthalmia-as 76.8 5.8 0.0002 31.0 6.0 44 196-250 38-81 (83)
94 3ghg_A Fibrinogen alpha chain; 76.6 4.9 0.00017 40.9 7.0 47 192-238 105-151 (562)
95 1jcd_A Major outer membrane li 76.1 8.8 0.0003 27.5 6.4 24 199-222 6-29 (52)
96 2xdj_A Uncharacterized protein 76.1 12 0.00041 29.0 7.7 45 197-241 20-64 (83)
97 3qne_A Seryl-tRNA synthetase, 75.8 35 0.0012 34.0 12.9 69 196-264 32-103 (485)
98 1nlw_A MAD protein, MAX dimeri 75.7 4.5 0.00016 30.8 5.2 30 196-225 46-75 (80)
99 3tnu_B Keratin, type II cytosk 75.3 15 0.00052 29.8 8.6 26 199-224 38-63 (129)
100 1kd8_A GABH AIV, GCN4 acid bas 75.2 2.3 8E-05 28.4 2.9 18 254-271 16-33 (36)
101 3i00_A HIP-I, huntingtin-inter 75.1 29 0.00099 28.5 10.2 48 190-244 33-80 (120)
102 2dq0_A Seryl-tRNA synthetase; 74.8 24 0.00084 34.6 11.4 70 196-265 30-102 (455)
103 1gd2_E Transcription factor PA 74.7 18 0.00062 27.1 8.1 57 183-248 10-66 (70)
104 3he5_A Synzip1; heterodimeric 74.5 11 0.00037 26.2 6.2 22 198-219 4-25 (49)
105 3tnu_B Keratin, type II cytosk 74.2 33 0.0011 27.8 10.7 29 199-227 45-73 (129)
106 1go4_E MAD1 (mitotic arrest de 74.1 4.2 0.00014 32.8 4.7 22 201-222 16-37 (100)
107 3tnu_A Keratin, type I cytoske 73.9 15 0.00051 30.0 8.2 13 257-269 116-128 (131)
108 2xdj_A Uncharacterized protein 72.9 11 0.00039 29.1 6.8 24 215-238 24-47 (83)
109 2yy0_A C-MYC-binding protein; 72.5 4.7 0.00016 28.8 4.2 29 206-241 21-49 (53)
110 2r2v_A GCN4 leucine zipper; co 72.5 5.5 0.00019 26.4 4.1 17 255-271 17-33 (34)
111 1i84_S Smooth muscle myosin he 72.3 19 0.00067 39.0 10.9 31 197-227 864-894 (1184)
112 3i00_A HIP-I, huntingtin-inter 72.2 12 0.0004 30.9 7.2 66 205-270 16-85 (120)
113 2r2v_A GCN4 leucine zipper; co 72.1 6.9 0.00024 25.9 4.5 27 199-225 3-29 (34)
114 1m1j_B Fibrinogen beta chain; 72.0 27 0.00093 34.7 11.0 18 253-270 175-192 (464)
115 2efr_A General control protein 71.1 33 0.0011 29.4 10.0 58 203-267 97-154 (155)
116 2ocy_A RAB guanine nucleotide 70.6 39 0.0013 29.0 10.3 44 202-245 49-92 (154)
117 1t2k_D Cyclic-AMP-dependent tr 70.4 7.6 0.00026 27.8 5.0 28 219-246 23-50 (61)
118 2er8_A Regulatory protein Leu3 70.2 2.2 7.6E-05 30.7 2.1 23 196-218 48-70 (72)
119 2efr_A General control protein 70.0 47 0.0016 28.4 10.7 39 227-265 72-110 (155)
120 1dip_A Delta-sleep-inducing pe 69.7 3.6 0.00012 31.8 3.2 26 213-238 17-42 (78)
121 2v66_B Nuclear distribution pr 69.5 29 0.00099 28.3 8.9 39 199-237 37-75 (111)
122 1jnm_A Proto-oncogene C-JUN; B 69.2 3.9 0.00013 29.5 3.3 27 220-246 24-50 (62)
123 1ses_A Seryl-tRNA synthetase; 69.0 53 0.0018 31.8 12.2 69 196-264 27-96 (421)
124 3tnu_A Keratin, type I cytoske 68.6 46 0.0016 27.0 11.3 26 199-224 40-65 (131)
125 2v66_B Nuclear distribution pr 68.4 47 0.0016 27.1 11.9 32 216-247 33-64 (111)
126 3tq2_A KE1; parallel three hel 68.2 11 0.00036 24.7 4.8 32 213-244 3-34 (36)
127 4emc_A Monopolin complex subun 67.3 38 0.0013 30.1 9.7 29 199-227 29-57 (190)
128 3swk_A Vimentin; cytoskeleton, 67.1 26 0.00088 27.0 7.8 57 213-269 2-58 (86)
129 3m9b_A Proteasome-associated A 66.7 5.5 0.00019 36.9 4.4 20 202-221 59-78 (251)
130 1nkp_A C-MYC, MYC proto-oncoge 66.6 11 0.00038 29.0 5.6 36 196-245 51-86 (88)
131 3u1c_A Tropomyosin alpha-1 cha 66.5 45 0.0015 26.1 12.9 64 201-264 34-97 (101)
132 2oto_A M protein; helical coil 66.0 57 0.0019 27.1 10.7 28 200-227 53-80 (155)
133 3bas_A Myosin heavy chain, str 66.0 35 0.0012 26.2 8.4 46 199-244 37-82 (89)
134 3uux_B Mitochondrial division 65.9 16 0.00055 33.6 7.3 52 196-247 176-227 (242)
135 3oja_A Leucine-rich immune mol 64.9 56 0.0019 31.1 11.4 26 196-221 366-391 (487)
136 2lw1_A ABC transporter ATP-bin 64.8 18 0.00061 27.6 6.4 25 197-221 22-46 (89)
137 2yy0_A C-MYC-binding protein; 64.7 8.1 0.00028 27.5 4.1 17 229-245 23-39 (53)
138 2xnx_M M protein, M1-BC1; cell 64.6 12 0.00041 32.1 5.8 46 226-271 88-133 (146)
139 3u59_A Tropomyosin beta chain; 64.4 49 0.0017 25.8 10.7 33 198-230 24-56 (101)
140 3ghg_C Fibrinogen gamma chain; 64.2 58 0.002 32.0 11.4 27 198-224 39-65 (411)
141 1nkp_A C-MYC, MYC proto-oncoge 64.1 12 0.00042 28.8 5.4 15 252-266 72-86 (88)
142 2oto_A M protein; helical coil 63.8 62 0.0021 26.8 10.9 47 202-248 34-80 (155)
143 4gkw_A Spindle assembly abnorm 63.4 70 0.0024 27.3 10.7 18 210-227 59-76 (167)
144 4b4t_K 26S protease regulatory 63.3 8.8 0.0003 37.4 5.4 55 206-267 37-91 (428)
145 2v71_A Nuclear distribution pr 63.0 81 0.0028 27.8 13.6 21 201-221 46-66 (189)
146 3q8t_A Beclin-1; autophagy, AT 62.6 54 0.0018 25.6 13.1 48 199-246 6-53 (96)
147 1skn_P DNA-binding domain of S 61.2 2.7 9.3E-05 33.5 1.1 26 181-206 66-92 (92)
148 4dzn_A Coiled-coil peptide CC- 60.9 18 0.00061 23.3 4.7 16 231-246 15-30 (33)
149 2ve7_C Kinetochore protein NUF 60.7 5.9 0.0002 36.1 3.5 61 178-247 117-177 (250)
150 2oa5_A Hypothetical protein BQ 60.7 3.6 0.00012 33.7 1.8 22 199-220 10-31 (110)
151 1dh3_A Transcription factor CR 60.7 12 0.0004 26.7 4.3 26 221-246 25-50 (55)
152 1cii_A Colicin IA; bacteriocin 60.5 1.2E+02 0.004 30.8 12.8 70 178-247 339-413 (602)
153 2wvr_A Geminin; DNA replicatio 59.8 36 0.0012 30.7 8.2 30 212-241 116-145 (209)
154 3efg_A Protein SLYX homolog; x 59.7 30 0.001 26.3 6.8 24 201-224 11-34 (78)
155 3qne_A Seryl-tRNA synthetase, 59.7 30 0.001 34.5 8.6 49 201-249 44-95 (485)
156 4dzn_A Coiled-coil peptide CC- 59.4 15 0.00051 23.6 4.1 9 258-266 21-29 (33)
157 2eqb_B RAB guanine nucleotide 59.1 51 0.0017 26.3 8.2 49 198-246 13-61 (97)
158 1deq_A Fibrinogen (alpha chain 59.1 19 0.00065 35.2 6.8 47 195-241 111-157 (390)
159 4b4t_M 26S protease regulatory 58.7 8.9 0.0003 37.5 4.6 12 256-267 63-74 (434)
160 3lss_A Seryl-tRNA synthetase; 58.4 1.3E+02 0.0046 29.8 13.0 32 196-227 36-67 (484)
161 3s4r_A Vimentin; alpha-helix, 57.8 64 0.0022 25.0 9.5 27 218-244 56-82 (93)
162 2dq3_A Seryl-tRNA synthetase; 57.7 28 0.00095 33.7 7.9 70 196-265 29-101 (425)
163 3vem_A Helicase protein MOM1; 57.7 42 0.0014 27.7 7.7 61 178-238 39-104 (115)
164 3m0a_A TNF receptor-associated 57.6 49 0.0017 23.6 8.3 25 199-223 7-31 (66)
165 4etp_A Kinesin-like protein KA 56.9 28 0.00097 33.5 7.7 62 199-270 5-66 (403)
166 1nkp_B MAX protein, MYC proto- 56.5 9.5 0.00033 28.7 3.5 11 231-241 67-77 (83)
167 1uii_A Geminin; human, DNA rep 56.5 52 0.0018 25.7 7.7 27 212-238 47-73 (83)
168 3vmx_A Voltage-gated hydrogen 56.4 34 0.0011 24.2 6.0 36 229-271 8-43 (48)
169 1wle_A Seryl-tRNA synthetase; 56.3 44 0.0015 33.3 9.2 65 201-268 81-156 (501)
170 3ghg_A Fibrinogen alpha chain; 56.0 49 0.0017 33.7 9.4 54 229-286 114-167 (562)
171 1hlo_A Protein (transcription 55.8 10 0.00035 28.4 3.5 10 213-222 49-58 (80)
172 3u59_A Tropomyosin beta chain; 55.7 70 0.0024 24.8 11.9 65 199-263 32-96 (101)
173 1deb_A APC protein, adenomatou 55.1 55 0.0019 23.5 7.1 27 222-248 7-33 (54)
174 3cl3_D NF-kappa-B essential mo 55.0 26 0.00089 29.4 6.1 67 202-271 28-94 (130)
175 3oa7_A Head morphogenesis prot 54.5 23 0.0008 31.8 6.1 42 206-247 32-73 (206)
176 2e7s_A RAB guanine nucleotide 54.4 13 0.00045 31.4 4.3 66 202-269 65-133 (135)
177 3nmd_A CGMP dependent protein 54.2 28 0.00096 26.5 5.7 33 236-268 37-69 (72)
178 2wuj_A Septum site-determining 53.5 13 0.00045 26.5 3.6 26 198-223 28-53 (57)
179 1joc_A EEA1, early endosomal a 53.2 52 0.0018 26.6 7.7 26 197-222 11-36 (125)
180 1dip_A Delta-sleep-inducing pe 52.9 11 0.00039 29.0 3.3 22 198-219 23-44 (78)
181 1x79_B RAB GTPase binding effe 52.9 93 0.0032 25.4 9.2 27 204-230 6-32 (112)
182 2dq0_A Seryl-tRNA synthetase; 52.8 45 0.0015 32.7 8.5 46 202-247 43-91 (455)
183 1hwt_C Protein (heme activator 52.7 10 0.00035 27.6 3.0 26 192-217 53-78 (81)
184 1uur_A Stata protein, STAT pro 52.3 1.4E+02 0.0047 29.9 11.9 84 185-269 20-120 (473)
185 3bas_A Myosin heavy chain, str 52.3 76 0.0026 24.2 12.4 72 196-267 13-84 (89)
186 3m91_A Proteasome-associated A 52.0 38 0.0013 24.0 5.7 7 258-264 42-48 (51)
187 3a2a_A Voltage-gated hydrogen 51.7 30 0.001 25.3 5.2 36 229-271 15-50 (58)
188 1jcd_A Major outer membrane li 51.2 40 0.0014 24.0 5.8 27 204-230 4-30 (52)
189 3vmx_A Voltage-gated hydrogen 50.8 54 0.0019 23.1 6.3 36 203-238 3-38 (48)
190 3u06_A Protein claret segregat 50.2 37 0.0013 32.9 7.4 61 206-269 5-65 (412)
191 1m1j_C Fibrinogen gamma chain; 50.1 1.9E+02 0.0065 28.2 12.5 28 196-223 40-67 (409)
192 3t98_B Nucleoporin NUP58/NUP45 50.1 91 0.0031 24.4 9.6 34 236-269 48-81 (93)
193 2eqb_B RAB guanine nucleotide 49.8 58 0.002 26.0 7.2 43 186-232 31-73 (97)
194 1zxa_A CGMP-dependent protein 49.1 21 0.00071 26.8 4.2 33 238-270 24-56 (67)
195 3ra3_A P1C; coiled coil domain 48.9 14 0.00046 23.1 2.6 19 229-247 4-22 (28)
196 3nmd_A CGMP dependent protein 48.6 45 0.0015 25.3 6.0 23 199-221 42-64 (72)
197 3u1c_A Tropomyosin alpha-1 cha 48.2 96 0.0033 24.2 12.9 70 196-265 22-91 (101)
198 3s9g_A Protein hexim1; cyclin 47.7 1.1E+02 0.0037 24.7 9.7 49 212-260 38-86 (104)
199 1nlw_A MAD protein, MAX dimeri 47.5 19 0.00064 27.4 3.8 14 229-242 65-78 (80)
200 2nrj_A HBL B protein; enteroto 47.3 58 0.002 30.7 8.1 76 193-271 119-194 (346)
201 3bbp_D GRIP and coiled-coil do 47.0 22 0.00075 27.0 4.0 46 201-246 19-64 (71)
202 1wlq_A Geminin; coiled-coil; 2 46.8 58 0.002 25.4 6.5 28 212-239 39-66 (83)
203 3qh9_A Liprin-beta-2; coiled-c 46.4 78 0.0027 24.6 7.2 38 228-265 22-59 (81)
204 1deq_A Fibrinogen (alpha chain 45.8 1.3E+02 0.0045 29.4 10.3 47 235-285 123-169 (390)
205 3ghg_B Fibrinogen beta chain; 45.5 81 0.0028 31.5 9.0 73 199-271 97-188 (461)
206 2wt7_B Transcription factor MA 45.5 1.1E+02 0.0037 24.0 9.8 64 198-269 22-85 (90)
207 1t6f_A Geminin; coiled-coil, c 44.9 26 0.00091 23.4 3.7 27 212-238 8-34 (37)
208 3fpp_A Macrolide-specific effl 44.9 61 0.0021 29.1 7.5 40 232-271 107-146 (341)
209 1p9i_A Cortexillin I/GCN4 hybr 44.8 23 0.00078 22.5 3.2 16 229-244 10-25 (31)
210 2xu6_A MDV1 coiled coil; prote 44.5 40 0.0014 25.7 5.2 48 197-244 21-68 (72)
211 3plt_A Sphingolipid long chain 44.4 1.7E+02 0.0059 26.6 10.4 63 186-254 104-166 (234)
212 2zvf_A Alanyl-tRNA synthetase; 44.1 58 0.002 26.7 6.8 48 196-243 6-57 (171)
213 4e61_A Protein BIM1; EB1-like 44.1 45 0.0016 27.0 5.8 34 207-247 7-40 (106)
214 3q0x_A Centriole protein; cent 43.9 83 0.0028 28.5 8.2 55 178-233 160-214 (228)
215 2w83_C C-JUN-amino-terminal ki 43.7 36 0.0012 26.3 4.8 25 215-239 34-58 (77)
216 3lss_A Seryl-tRNA synthetase; 43.5 78 0.0027 31.5 8.6 25 201-225 48-72 (484)
217 3vp9_A General transcriptional 43.5 1.2E+02 0.0041 23.9 8.0 16 256-271 71-86 (92)
218 3htk_A Structural maintenance 43.2 80 0.0027 21.9 8.0 45 200-244 8-52 (60)
219 2wuj_A Septum site-determining 43.1 16 0.00055 26.0 2.7 27 221-247 30-56 (57)
220 3mov_A Lamin-B1; LMNB1, B-type 42.7 62 0.0021 25.4 6.3 48 222-269 41-88 (95)
221 2e7s_A RAB guanine nucleotide 41.9 24 0.00083 29.7 4.0 39 208-246 43-81 (135)
222 2oa5_A Hypothetical protein BQ 41.7 14 0.00047 30.3 2.4 23 221-243 11-33 (110)
223 1fmh_A General control protein 41.4 27 0.00093 22.4 3.2 27 222-248 5-31 (33)
224 1ik9_A DNA repair protein XRCC 40.8 1.9E+02 0.0066 25.6 11.1 32 201-232 136-167 (213)
225 1fmh_B General control protein 40.6 36 0.0012 21.8 3.7 19 229-247 12-30 (33)
226 3ra3_A P1C; coiled coil domain 40.1 21 0.00072 22.2 2.5 21 202-222 5-25 (28)
227 1l8d_A DNA double-strand break 39.9 1.3E+02 0.0043 23.1 11.3 32 199-230 12-43 (112)
228 2ve7_A Kinetochore protein HEC 39.1 31 0.0011 32.2 4.7 40 205-247 186-225 (315)
229 3thf_A Protein shroom; coiled- 39.1 98 0.0033 27.5 7.6 31 192-222 14-44 (190)
230 1m1j_B Fibrinogen beta chain; 38.8 2.5E+02 0.0086 27.9 11.4 12 199-210 102-113 (464)
231 2pnv_A Small conductance calci 38.7 21 0.00071 24.6 2.6 20 201-220 20-39 (43)
232 2wpq_A Trimeric autotransporte 38.7 1.5E+02 0.0052 23.7 11.1 71 198-268 7-98 (99)
233 4g1a_A AQ-C16C19 peptide; heli 38.2 15 0.00051 23.5 1.6 25 199-223 2-26 (32)
234 3jsv_C NF-kappa-B essential mo 38.1 1.5E+02 0.0051 23.6 7.8 42 186-227 12-56 (94)
235 3htk_A Structural maintenance 38.0 98 0.0034 21.4 7.1 50 193-242 8-57 (60)
236 4b4t_K 26S protease regulatory 37.9 28 0.00097 33.8 4.4 22 200-221 45-66 (428)
237 1wlq_A Geminin; coiled-coil; 2 37.7 61 0.0021 25.3 5.4 12 233-244 39-50 (83)
238 1ic2_A Tropomyosin alpha chain 37.5 1.3E+02 0.0043 22.5 8.9 36 213-248 22-57 (81)
239 2ke4_A CDC42-interacting prote 37.2 1.2E+02 0.004 23.9 7.2 31 196-226 21-51 (98)
240 3e98_A GAF domain of unknown f 37.1 1E+02 0.0034 27.7 7.7 69 199-271 67-135 (252)
241 2zxx_A Geminin; coiled-coil, c 37.0 60 0.0021 25.0 5.2 30 212-241 35-64 (79)
242 1tu3_F RAB GTPase binding effe 36.8 23 0.00077 27.4 2.7 61 197-264 12-75 (79)
243 3e98_A GAF domain of unknown f 36.6 69 0.0023 28.8 6.5 41 220-260 67-107 (252)
244 1ic2_A Tropomyosin alpha chain 36.6 1.3E+02 0.0045 22.4 7.8 45 204-248 6-50 (81)
245 3viq_B Mating-type switching p 36.5 1.5E+02 0.0051 23.1 8.7 57 200-257 4-60 (85)
246 2akf_A Coronin-1A; coiled coil 36.5 32 0.0011 22.1 3.0 26 200-225 2-27 (32)
247 1m1j_A Fibrinogen alpha subuni 36.3 82 0.0028 31.6 7.3 31 196-226 110-140 (491)
248 3a2a_A Voltage-gated hydrogen 36.1 67 0.0023 23.4 5.0 35 203-237 10-44 (58)
249 1gk6_A Vimentin; intermediate 36.0 97 0.0033 22.0 5.9 33 201-233 4-36 (59)
250 1a93_B MAX protein, coiled coi 35.7 43 0.0015 22.1 3.6 6 234-239 23-28 (34)
251 1lrz_A FEMA, factor essential 35.5 1.7E+02 0.006 27.5 9.4 95 197-303 247-354 (426)
252 2f1m_A Acriflavine resistance 35.3 1.5E+02 0.0051 25.7 8.3 33 238-270 97-129 (277)
253 1ses_A Seryl-tRNA synthetase; 35.3 62 0.0021 31.3 6.3 47 202-248 40-87 (421)
254 3azd_A Short alpha-tropomyosin 35.2 20 0.00069 23.7 2.0 29 198-226 5-33 (37)
255 3v86_A De novo design helix; c 35.2 51 0.0017 20.3 3.6 23 199-221 2-24 (27)
256 1s1c_X RHO-associated, coiled- 34.9 1.5E+02 0.005 22.4 7.9 31 201-231 3-33 (71)
257 2w6a_A ARF GTPase-activating p 34.9 37 0.0013 25.1 3.5 20 198-217 42-61 (63)
258 3trt_A Vimentin; cytoskeleton, 34.8 1.3E+02 0.0044 21.8 7.8 17 230-246 54-70 (77)
259 2dq3_A Seryl-tRNA synthetase; 34.5 40 0.0014 32.6 4.8 62 201-265 41-105 (425)
260 1uuj_A Platelet-activating fac 34.2 17 0.00057 28.6 1.7 25 191-215 59-83 (88)
261 3he4_A Synzip6; heterodimeric 34.0 45 0.0015 23.6 3.7 30 197-226 17-46 (56)
262 1fxk_A Prefoldin; archaeal pro 33.8 94 0.0032 23.5 6.0 29 198-226 66-94 (107)
263 1lwu_C Fibrinogen gamma chain; 33.7 89 0.0031 29.5 7.0 21 200-220 15-35 (323)
264 3coq_A Regulatory protein GAL4 33.4 35 0.0012 24.9 3.3 22 197-218 45-66 (89)
265 2zqm_A Prefoldin beta subunit 33.3 1.2E+02 0.0041 23.2 6.6 43 195-237 68-110 (117)
266 1am9_A Srebp-1A, protein (ster 32.4 47 0.0016 25.0 4.0 46 197-242 23-74 (82)
267 3q0x_A Centriole protein; cent 32.0 1.6E+02 0.0054 26.6 8.0 54 209-262 169-222 (228)
268 2z5i_A TM, general control pro 31.8 74 0.0025 22.3 4.6 19 203-221 11-29 (52)
269 2dnx_A Syntaxin-12; snare, HAB 31.7 2E+02 0.0069 23.1 8.0 45 199-243 30-76 (130)
270 1fxk_C Protein (prefoldin); ar 31.7 1.2E+02 0.0042 24.0 6.6 23 201-223 92-114 (133)
271 1c94_A Retro-GCN4 leucine zipp 31.1 18 0.00061 23.9 1.2 29 239-267 9-37 (38)
272 1tu3_F RAB GTPase binding effe 31.1 64 0.0022 24.9 4.4 44 225-268 5-55 (79)
273 4ani_A Protein GRPE; chaperone 31.0 1.7E+02 0.0059 26.1 8.0 18 202-219 64-81 (213)
274 3uux_B Mitochondrial division 30.8 3.2E+02 0.011 25.1 10.9 59 198-263 164-222 (242)
275 1g6u_A Domain swapped dimer; d 30.3 80 0.0027 21.7 4.4 18 201-218 24-41 (48)
276 1fmh_B General control protein 30.2 1.1E+02 0.0037 19.6 4.7 29 199-227 3-31 (33)
277 4dk0_A Putative MACA; alpha-ha 30.2 3E+02 0.01 24.7 10.5 34 238-271 121-154 (369)
278 1lq7_A Alpha3W; three helix bu 30.0 38 0.0013 24.7 2.9 58 200-264 5-66 (67)
279 3iox_A AGI/II, PA; alpha helix 30.0 4.1E+02 0.014 26.7 11.3 25 203-227 33-57 (497)
280 1uii_A Geminin; human, DNA rep 29.9 1.2E+02 0.004 23.7 5.8 32 232-270 46-77 (83)
281 3swy_A Cyclic nucleotide-gated 29.5 91 0.0031 21.7 4.6 28 198-225 6-33 (46)
282 3he4_A Synzip6; heterodimeric 29.4 1.4E+02 0.0047 21.1 5.6 20 212-231 18-37 (56)
283 4b4t_M 26S protease regulatory 29.2 35 0.0012 33.2 3.5 43 201-243 29-71 (434)
284 3oja_A Leucine-rich immune mol 29.2 3.7E+02 0.013 25.3 11.8 9 201-209 385-393 (487)
285 3k66_A Beta-amyloid-like prote 29.0 3.4E+02 0.012 24.8 12.0 91 178-269 16-114 (239)
286 3e35_A Uncharacterized protein 28.8 54 0.0018 31.0 4.5 58 178-248 212-272 (325)
287 3bbp_D GRIP and coiled-coil do 28.7 81 0.0028 23.9 4.6 22 245-266 42-63 (71)
288 2ve7_C Kinetochore protein NUF 28.6 35 0.0012 30.9 3.1 32 194-225 145-176 (250)
289 3vkg_A Dynein heavy chain, cyt 28.6 6.2E+02 0.021 31.2 14.1 36 196-231 1926-1961(3245)
290 2wam_A RV2714, conserved hypot 28.2 82 0.0028 30.1 5.7 54 188-248 253-306 (351)
291 3tq2_A KE1; parallel three hel 27.5 1.3E+02 0.0043 19.6 4.7 31 235-265 4-34 (36)
292 3mov_A Lamin-B1; LMNB1, B-type 27.5 2.2E+02 0.0075 22.2 10.8 40 202-241 42-81 (95)
293 1x8y_A Lamin A/C; structural p 27.5 2E+02 0.0069 21.7 10.4 12 257-268 67-78 (86)
294 2h7o_A Protein kinase YPKA; YO 27.4 3.1E+02 0.01 25.7 9.1 56 192-250 110-188 (303)
295 4dk0_A Putative MACA; alpha-ha 27.0 3.4E+02 0.012 24.3 9.5 24 243-266 119-142 (369)
296 3gp4_A Transcriptional regulat 26.8 1.4E+02 0.0049 24.2 6.3 42 196-237 87-128 (142)
297 1i6z_A BAG-family molecular ch 26.5 2.7E+02 0.0091 23.4 7.9 30 198-227 22-51 (135)
298 2fxo_A Myosin heavy chain, car 26.1 2.5E+02 0.0087 22.5 11.6 72 194-265 10-81 (129)
299 4dyl_A Tyrosine-protein kinase 25.9 4E+02 0.014 25.1 10.1 86 186-271 304-391 (406)
300 1hs7_A Syntaxin VAM3; UP-and-D 25.8 1.8E+02 0.006 23.0 6.4 23 226-248 65-87 (97)
301 1uix_A RHO-associated kinase; 25.8 2.1E+02 0.0073 21.5 7.5 30 202-231 2-31 (71)
302 1no4_A Late, head morphogenesi 25.7 2.4E+02 0.0082 22.0 7.0 42 206-247 28-69 (97)
303 2gkw_A TNF receptor-associated 25.5 99 0.0034 26.1 5.3 23 199-221 2-24 (192)
304 1pyi_A Protein (pyrimidine pat 25.4 46 0.0016 24.7 2.8 20 197-216 48-67 (96)
305 2p0t_A UPF0307 protein pspto_4 25.0 2E+02 0.0068 25.0 7.1 15 191-205 67-81 (176)
306 1qvr_A CLPB protein; coiled co 25.0 2.4E+02 0.0081 29.1 8.9 59 185-243 386-462 (854)
307 1jad_A PLC-beta, phospholipase 25.0 4E+02 0.014 24.4 13.3 64 185-248 82-150 (251)
308 2i1j_A Moesin; FERM, coiled-co 24.9 88 0.003 31.5 5.5 28 199-226 337-364 (575)
309 3mq9_A Bone marrow stromal ant 24.9 4.3E+02 0.015 24.7 12.7 33 194-226 387-419 (471)
310 3b8o_A Lipopolysaccharide bios 24.8 2.6E+02 0.0088 25.1 8.2 19 253-271 162-180 (265)
311 1avy_A Fibritin, gpwac M; bact 24.6 1.4E+02 0.0049 22.7 5.3 17 205-221 9-25 (74)
312 3b8m_A Ferric enterobactin (en 24.6 3.6E+02 0.012 24.4 9.2 17 254-270 178-194 (280)
313 2p22_A Suppressor protein STP2 24.4 3.5E+02 0.012 23.4 10.2 60 196-255 62-132 (174)
314 2z5i_A TM, general control pro 24.4 1.8E+02 0.006 20.4 5.5 37 186-222 8-44 (52)
315 2xv5_A Lamin-A/C; structural p 24.0 2.3E+02 0.0078 21.2 7.8 13 257-269 44-56 (74)
316 3w03_C DNA repair protein XRCC 24.0 1E+02 0.0036 27.0 5.2 43 178-224 137-179 (184)
317 3mtu_A Tropomyosin alpha-1 cha 23.7 2.2E+02 0.0076 21.1 6.3 29 199-227 4-32 (75)
318 3mq7_A Bone marrow stromal ant 23.6 3.1E+02 0.011 22.6 11.6 36 206-241 73-108 (121)
319 2lw1_A ABC transporter ATP-bin 23.4 2.2E+02 0.0074 21.4 6.4 22 205-226 23-44 (89)
320 1m1j_A Fibrinogen alpha subuni 23.3 5.2E+02 0.018 25.9 10.5 51 231-285 117-167 (491)
321 2l5g_A GPS2 protein, G protein 22.9 70 0.0024 21.5 2.9 19 199-217 17-35 (38)
322 1vcs_A Vesicle transport throu 22.9 2E+02 0.0067 22.4 6.1 62 194-268 35-96 (102)
323 2v4h_A NF-kappa-B essential mo 22.8 3.1E+02 0.011 22.3 11.1 27 240-266 63-96 (110)
324 3he5_B Synzip2; heterodimeric 22.7 2E+02 0.0068 20.0 5.5 28 199-226 19-46 (52)
325 2b9b_A Fusion glycoprotein F0; 22.6 1.5E+02 0.005 29.9 6.5 55 209-274 432-486 (497)
326 2p22_A Suppressor protein STP2 22.6 3.8E+02 0.013 23.2 9.0 49 223-271 47-95 (174)
327 1gk7_A Vimentin; intermediate 22.3 91 0.0031 20.7 3.4 7 233-239 28-34 (39)
328 3w03_C DNA repair protein XRCC 22.3 1.4E+02 0.0047 26.2 5.6 38 197-241 145-182 (184)
329 3ibp_A Chromosome partition pr 22.2 5E+02 0.017 24.5 10.0 15 253-267 90-104 (302)
330 3swf_A CGMP-gated cation chann 22.0 1.3E+02 0.0044 22.9 4.6 26 199-224 9-34 (74)
331 3pbf_A Pulmonary surfactant-as 22.0 66 0.0023 25.1 3.3 23 199-221 4-26 (148)
332 2c5k_T Syntaxin TLG1, T-snare 21.9 1.3E+02 0.0043 23.5 4.8 30 197-226 36-65 (95)
333 2xv5_A Lamin-A/C; structural p 21.5 2.6E+02 0.0088 20.9 7.4 41 201-241 9-49 (74)
334 3m91_A Proteasome-associated A 21.4 2.2E+02 0.0075 20.0 5.9 21 201-221 13-33 (51)
335 2aze_B Transcription factor E2 21.3 1.3E+02 0.0046 23.8 4.9 21 203-223 5-25 (106)
336 1x8y_A Lamin A/C; structural p 21.1 2.7E+02 0.0092 21.0 7.5 45 199-243 30-74 (86)
337 1hx1_B BAG-1, BAG-family molec 21.1 3E+02 0.01 22.5 7.0 33 196-228 10-42 (114)
338 2wvr_A Geminin; DNA replicatio 21.0 1.8E+02 0.0061 26.1 6.1 13 233-245 116-128 (209)
339 2zvf_A Alanyl-tRNA synthetase; 20.9 70 0.0024 26.2 3.3 26 201-226 29-54 (171)
340 2zdi_C Prefoldin subunit alpha 20.0 1.5E+02 0.005 24.3 5.1 22 202-223 103-124 (151)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.08 E-value=2e-10 Score=83.89 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
|+||+|||.||++||.+||.+|..|+.||..|..++..|++..
T Consensus 10 ResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 10 REAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987654
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.81 E-value=1e-08 Score=76.67 Aligned_cols=49 Identities=35% Similarity=0.372 Sum_probs=44.0
Q ss_pred cchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 178 AETKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 178 ~DpKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
..-||++ |++|+|||.||++|+.+||.+|..|+.+|..|..+|..|.++
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777 999999999999999999999999999999999999888654
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.79 E-value=2e-08 Score=74.02 Aligned_cols=50 Identities=32% Similarity=0.480 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
|++|+|||.||.+|+.+||.+|..|+.+|..|..+|..| ..|+..||+.|
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L-------~~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLL-------RNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 999999999999999999999999999999999999977 55566666544
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.74 E-value=2.6e-08 Score=73.73 Aligned_cols=51 Identities=31% Similarity=0.429 Sum_probs=44.5
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 180 TKMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 180 pKR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
-||.| |.+|+|||.||.+||.+||.+|..|+.++..|..+|..|..+...|
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666 9999999999999999999999999999999999999875544433
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.67 E-value=6.7e-08 Score=71.87 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVS 229 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~ 229 (307)
|++|+|+|.||++||.+||.+|..|+.+|..|..+|..|..+...
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876544433
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.55 E-value=1.9e-07 Score=71.33 Aligned_cols=54 Identities=26% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
|.+++..|+||.+||.+||.+|..|+.++..|..+...|..+...|..||..||
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999988877777777777777777776654
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.31 E-value=1.7e-06 Score=64.50 Aligned_cols=54 Identities=24% Similarity=0.224 Sum_probs=44.7
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 181 KMTK-RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 181 KR~K-RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
||.+ |.+|+|+|.||.+++.+||.+|+.|+.+|..|..+|+.| ..|+..||.-|
T Consensus 6 Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll 60 (63)
T 1ci6_A 6 KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLI 60 (63)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4444 999999999999999999999999999999999999877 55566665443
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=97.54 E-value=0.00031 Score=54.59 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+.|+|||+++.+-..+++.+|..|+.||..|..+|..|..+
T Consensus 24 N~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 24 NIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998866433
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.52 E-value=0.00024 Score=49.28 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
.+|+.|||.+|+.|+..++.|..+|+.| ..||..|++-|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHhc
Confidence 3799999999999999999999999977 556666666543
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=97.41 E-value=0.00053 Score=54.28 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
.+.|+|||+++.+-..+++.+|..|+.||..|..+|..|
T Consensus 24 N~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 24 NIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999998888888743
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.73 E-value=0.00016 Score=59.28 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVS 229 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~ 229 (307)
|.+||++|.||++.+.+||..+..|+.+...|..+...|..+...
T Consensus 46 R~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 46 RGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887777766665555544433333
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=96.64 E-value=0.0073 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
|-+||-.|-||+..+.+||..+..|+.+...|..++..+ .-|-..+|+++++|
T Consensus 36 RgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 36 RGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 999999999999999999999998888877777766655 55666677776654
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.60 E-value=0.11 Score=40.60 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcC
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA----ERLKVSLAI 271 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei----~RLk~~~~~ 271 (307)
-+..||.||+.+=..++-|.-+|..|.+++..|..||.+++..-+. .+..++.|+.|. .||+.++|.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~-------L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE-------LERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999887777777777766666666666655555544444 444555666665 467777764
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.50 E-value=0.18 Score=39.39 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQK 240 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~r 240 (307)
|...|..|..+|++|..+...+......|..||..||+.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.16 E-value=0.31 Score=39.94 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh--------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQH--------------VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKE 261 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~--------------~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~E 261 (307)
..||.+|-++|..+..+++.|-.+|.-++... ..+.++-..||..+....-...--++..+.|+.|
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888888888888877665332 2233333455555555544444456678899999
Q ss_pred HHHHHHHhcC
Q 021792 262 AERLKVSLAI 271 (307)
Q Consensus 262 i~RLk~~~~~ 271 (307)
|.-||.++-+
T Consensus 99 l~FLKk~hee 108 (119)
T 3ol1_A 99 IAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.80 E-value=0.27 Score=38.85 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHV-----SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~-----~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
.||..|+.+|..|..+|..++++.. .-..+=..|+.+|..+..+..--+.....|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888887776532 234555677788888888877777778888888888875
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.59 E-value=0.063 Score=39.91 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
+..=|.|||.|..-+..|+.+|..|+..-..|..||..|+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3445899999999999999999999999999999999987
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.37 E-value=0.5 Score=41.39 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 187 FGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 187 SA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
.-+|.|-+--.-|.||+.+|+.|+.|+..+...++.+ ..||+.|-.+|..|+.++--.+
T Consensus 80 qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 80 AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666677788999999999999888888887754 7889999999999988766555
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.04 E-value=0.36 Score=40.69 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG 253 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda 253 (307)
..+.+.+||..++.+..|+..|..++..++.+...+..|+.+|+.++..|+.+..=.++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888888888888888888888888888888877766544433
No 20
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=92.72 E-value=0.44 Score=33.54 Aligned_cols=44 Identities=27% Similarity=0.399 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+||.||+.|++-.-.|..+++.|--++ ..-...||+||..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 456666666666555555555543333 33457899999999876
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.89 E-value=1.1 Score=38.60 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYL 258 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L 258 (307)
-..-++.|+.|..+|..++..++.....|..||..|-.|. |.+..+--+++|+++
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~MN~an 148 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 3366778888888888888888888888888888887775 444444445555544
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.65 E-value=1.2 Score=43.60 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
..|++.++.++.+.+.+..++..++++...+..+-..|+.++..|+++..-+....++++.|++.++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444445555555555444444444444444444444444444555544444444455555544443
No 23
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.61 E-value=0.35 Score=37.62 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 229 SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.+..+|..|+.+|..|+++..=....++.++.|+.+|-..+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555555666666666655443
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.43 E-value=0.72 Score=35.88 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh--------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQ--------------HVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~--------------~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
|.+|-++|..+..+++.|-.++.-++.. +..+.++=..||.-+..+.-...=-++..|.|+.||.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887777765532 23333444556666766666666677788999999998
Q ss_pred HHHH
Q 021792 265 LKVS 268 (307)
Q Consensus 265 Lk~~ 268 (307)
||.+
T Consensus 82 Lkk~ 85 (86)
T 3swk_A 82 LKKL 85 (86)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 8864
No 25
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.35 E-value=0.33 Score=37.37 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+-|.+||.|+-.++..+..|+..|+..+++-..|..+-..|..||+.++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 358899999999999999999999999888899999999999988887753
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.30 E-value=1.7 Score=42.43 Aligned_cols=80 Identities=9% Similarity=0.116 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~ 273 (307)
+-.+.+.+++.+.+.++.++..+..++....++...+..|..+|+.+++...++..--.-.++.+++|+..|-..+..++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445556666666666666666666666666666666777777777766666655555556666777777766666644
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.93 E-value=1.5 Score=35.34 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 021792 253 GQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~~ 271 (307)
-..+.|.+||+|||.....
T Consensus 75 ~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999987654
No 28
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=90.80 E-value=0.64 Score=35.79 Aligned_cols=47 Identities=28% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
+||.||+.|++-.-.|..+++.|--++ ..-+..||+||..|+.+...
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 466666666666666665555553333 33457899999999987653
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.27 E-value=0.63 Score=30.83 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 021792 253 GQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~~ 271 (307)
..++.|+.||.|||.+.++
T Consensus 15 ~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 15 XKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HhhhhHHHHHHHHHHHHhc
Confidence 3467888999999998875
No 30
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.21 E-value=0.41 Score=31.59 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.+++.|..+|..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45799999999999999999999874
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.89 E-value=3.2 Score=45.11 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~ 222 (307)
.+|..|+.|++.|..++..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 32
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=88.43 E-value=2.1 Score=30.83 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..|-++|+.|..||+.|..+|.-=..+-..|..|-..+|+-+.-|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 578889999999999999998887778888888877777665544
No 33
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.02 E-value=0.86 Score=30.20 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.++..|..++..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 57899999999999999999998774
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.93 E-value=0.7 Score=30.46 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|+.||.|||.+.++
T Consensus 15 ~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 15 KNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHhhc
Confidence 467788999999998875
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.79 E-value=13 Score=32.39 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-----HHHH--HHH
Q 021792 183 TKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK-----LIME--GQY 255 (307)
Q Consensus 183 ~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~-----~lkd--a~~ 255 (307)
.|-++-.=-|+||.+ .||-..++.++..+..|...+..|+.....|.-|...|...|..=.... .++| +-.
T Consensus 22 Lk~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri 99 (168)
T 3o0z_A 22 LRTESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARI 99 (168)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777875 5677777777777777777777777777777777766655554332211 1122 245
Q ss_pred HHHHHHHHHHHHHh
Q 021792 256 QYLKKEAERLKVSL 269 (307)
Q Consensus 256 E~L~~Ei~RLk~~~ 269 (307)
..|..|+.|+|...
T Consensus 100 ~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 100 TSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888887644
No 36
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.63 E-value=3.1 Score=31.99 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=23.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~ 273 (307)
+++....|..||..|+.+|+ .|+.|+..||.++.+.|
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~--------------~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCC
Confidence 34444555666666666654 57888888988877643
No 37
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.62 E-value=2.1 Score=32.66 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+..|++.++.+|..|..+|..|+++-..-..+...++..|+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444444444444444333
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.51 E-value=4 Score=38.95 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 239 QKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 239 ~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
.||+.++.+..-..+..+.+++||+|||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777777777777777888899999987
No 39
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.10 E-value=0.7 Score=31.99 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
-++|||.+|-+||+||..|..-|
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 47899999999999999998654
No 40
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.88 E-value=2.6 Score=34.13 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHhhhhhhhhhHHHHH
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQADLGA-------RVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~-------~l~~L~~~~~~L~~EN~~LK~ 239 (307)
||.==.+...+||.++..|+.|+..|.. +|..|+.+-..|+.||..|++
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444456667788888888777665544 444444444444444444443
No 41
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.82 E-value=0.64 Score=43.09 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=27.2
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
+..|+.+...|...|..|+..|+.+.++ .+.|++||++|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~E-------l~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQ-------LLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcC
Confidence 4455555666666666666666666554 5678889988875
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.59 E-value=1.1 Score=29.66 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|+.||.|||.+.++
T Consensus 16 ~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 16 XLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 356788999999999875
No 43
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=86.58 E-value=6.3 Score=28.91 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
|-..|++||.++.++++-++.+..++..+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~ 32 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEAS 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45678999999999999888777666654
No 44
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=86.13 E-value=1.3 Score=29.18 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.++..|..+++.|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56899999999999999999998774
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.90 E-value=2.6 Score=33.05 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=24.8
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPR 274 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~ 274 (307)
+++....|..||..|+.+|+ .|+.|+..||.++.+.|.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCcH
Confidence 34444555666666666654 688999999999998664
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.44 E-value=1.5 Score=28.93 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.+++.|..+|+.|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56899999999999999999998875
No 47
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.40 E-value=1.4 Score=29.09 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.++..|..+++.|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 67899999999999999999998774
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.32 E-value=6.1 Score=33.14 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+.+++..+..|..+..++..++..+.++...|..++.+|..++..|
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=85.28 E-value=2.1 Score=31.16 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.+..|+.+...|..+|..|+..|+.|..+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888999888887554443
No 50
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=85.09 E-value=8.1 Score=30.10 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
-++-+-|-.|+..|.-+|+.|+.+...-.-.=+.=|..|..|.++.-.+|+..+.|..|+
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455666666666666666555544444445557889999999999999777777765
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.00 E-value=1.4 Score=33.33 Aligned_cols=31 Identities=35% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
..||..|+.+++.|+.|...|..++..|.++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888776665555554444333
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.36 E-value=1.7 Score=29.14 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+.+||.||+.|-.++..|..+++.|..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 578999999999999999999988754
No 53
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.07 E-value=3.1 Score=31.82 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+-|..+..|+...+-=+.-...|.-+-..|..||+-|.+||+.|.++
T Consensus 29 ~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 29 SKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 33444455555554445555667777778899999999999988764
No 54
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.94 E-value=6 Score=43.01 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+.+++++..|..++..|.++...+..|+.+|+++++.+
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.92 E-value=3 Score=40.40 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
.|..+|..|+++...|..+...++.+++.+.++.+-.+.+-..|..+|+.||.-
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444444444444444445555555555555555566667778888888743
No 56
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.62 E-value=1.8 Score=28.43 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021792 255 YQYLKKEAERLKVSLAI 271 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~~~ 271 (307)
+..|+.||.|||.+.++
T Consensus 16 ~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 16 XYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcc
Confidence 56788999999999875
No 57
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.13 E-value=7.7 Score=29.99 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIM 251 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lk 251 (307)
..++..|+|.++.+|..|..+|..|+++-..-..+...++..|+.+.+..-.|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34567788888889999999998888888777777777777777766654333
No 58
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.11 E-value=1.4 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.+++.|..+++.|.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46899999999999999999998874
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.97 E-value=1.5 Score=29.00 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|..||.|||.+.|+
T Consensus 16 ~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 16 KGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 356788999999999875
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.86 E-value=14 Score=28.14 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+.++-..+..+|..|+.+|..|+++..=....++.++.|+.+|-..++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445668889999999999988877777778888888888766544
No 61
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=82.55 E-value=1.5 Score=29.34 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+.+||.||+.|-.++..|..++..|..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 468999999999999999999988754
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.55 E-value=1.7 Score=31.90 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 021792 252 EGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 252 da~~E~L~~Ei~RLk~~~~ 270 (307)
...|..|+.||..||..++
T Consensus 43 ~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 43 LSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555443
No 63
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=82.29 E-value=5.5 Score=30.77 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLL-------QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~-------~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
+.|+.|-.||+.|...-..|. ..-..|+.|+..|+..+.++.+-..--+.-...|+.|+.|
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555544322222 2334456666666666666665544444444445555544
No 64
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.20 E-value=1.8 Score=28.65 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|..||.|||.+.|+
T Consensus 16 ~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 16 ANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 356788999999999875
No 65
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=82.15 E-value=1.1 Score=40.75 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=30.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021792 228 VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISP 273 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~ 273 (307)
..|..||.+||.++..|+++.. ..+.|+.|-+|||.+++...
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcc
Confidence 4567888888888887776543 45678889999999998743
No 66
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=81.96 E-value=6.1 Score=27.42 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021792 252 EGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 252 da~~E~L~~Ei~RLk~~~ 269 (307)
.-+...|++||-.||.-.
T Consensus 30 kdliaylekeianlrkki 47 (49)
T 3he5_A 30 KDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345667888888888643
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.84 E-value=11 Score=32.35 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-------HHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGA-------RVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~-------~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
-|..|+.....|+.++..|.. -+..++-+...|..+++.+..++..|++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 4444444444445555555555444444
No 68
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.74 E-value=2.5 Score=27.78 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021792 255 YQYLKKEAERLKVSLAI 271 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~~~ 271 (307)
+..|..||.|||.++|+
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 56788999999999885
No 69
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=81.28 E-value=0.64 Score=38.05 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
..||..|...|+.|+.+. +....|..+|..|+.+|+.|+.++++
T Consensus 73 ieYIk~Lq~~~~~l~~~~-----------~~~~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 73 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------C-------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346655555555554332 22345788999999999999988764
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.27 E-value=5.4 Score=33.16 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.+|+-.|+.|.|+.+-..+.-|.|++|.+-|.+-..
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 445555555555555555666677777766655443
No 71
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.16 E-value=1.9 Score=28.60 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+.+||.||+.|-.++..|..+++.|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56899999999999999999998874
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=80.90 E-value=16 Score=37.06 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHH---
Q 021792 182 MTKRQFGQRSRVRKLQYIAE----LERTVEYFQTLQADLGARVALLLQQH-VSLSMENSKLKQKIARVQKEKLIMEG--- 253 (307)
Q Consensus 182 R~KRqSA~RSR~RKl~Yi~E----LE~kVq~Lq~E~a~Ls~~l~~L~~~~-~~L~~EN~~LK~rl~~l~qq~~lkda--- 253 (307)
|+|++.|.+-...-.+-..+ +|.+-+++|.-+..|..++ +++. ..+...++.|..+|+ +|+..++++
T Consensus 493 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km---e~~~~~~~~e~~~~~~~~~~--~~~~~~~~g~~~ 567 (592)
T 1f5n_A 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM---ENDRVQLLKEQERTLALKLQ--EQEQLLKEGFQK 567 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 44456665443332222233 3334444444444444433 2333 344444555565554 566777775
Q ss_pred HHHHHHHHHHHHHHH
Q 021792 254 QYQYLKKEAERLKVS 268 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~ 268 (307)
..+.|.+||+.|+..
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 467899999999987
No 73
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.90 E-value=7.4 Score=34.66 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIME 252 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkd 252 (307)
-|+.|+.||..|+.++. ....|++.|+.+|++++.+....+
T Consensus 21 LV~~L~~En~~L~~ql~-------~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLD-------TKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 36667777776666666 457778888888888887775444
No 74
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.37 E-value=2.1 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+.+||.||+.|-.+++.|..+++.|..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999999988753
No 75
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=80.30 E-value=2.6 Score=27.91 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|+.||.|||.+.++
T Consensus 16 ~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 16 KLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcc
Confidence 366788999999998875
No 76
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.24 E-value=22 Score=31.79 Aligned_cols=68 Identities=19% Similarity=0.063 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG----QYQYLKKEAERLK 266 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda----~~E~L~~Ei~RLk 266 (307)
..|.+||..+..|++....+..++..+..+...+..+=..++.+++..+++. ..+ ..++|.+||+-++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l--~~v~~~kE~~aL~kEie~~~ 103 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM--SEIKSERELRSLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777666666666666666666666555433 122 4556666665554
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.17 E-value=11 Score=45.65 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
+.+.+.+.++.+...|.++|+.|+.+...++.|...|+.+++..+......+.|...|..|-.|-.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 334455556667777777888888888888899999999999998888888888888877766643
No 78
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.06 E-value=33 Score=30.68 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 021792 255 YQYLKKEAERL 265 (307)
Q Consensus 255 ~E~L~~Ei~RL 265 (307)
...+++|+..|
T Consensus 152 ~~e~~~e~~~l 162 (256)
T 3na7_A 152 VKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 79
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.06 E-value=16 Score=29.43 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021792 190 RSRVRKLQYIAELERTVEYFQ 210 (307)
Q Consensus 190 RSR~RKl~Yi~ELE~kVq~Lq 210 (307)
-+..=..+++.+|+.+|+.++
T Consensus 22 q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 22 QAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777644
No 80
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.98 E-value=4.3 Score=39.53 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 214 ADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 214 a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
.+|..++..|.++...|..+++.++..++.+.++..-.+.+...|..+|+.||.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444444444444455555555555555544555666777788887774
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.96 E-value=13 Score=32.09 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|.....++.|.-.|++. +.++-+.|... +...++.|...|+.+..=++++.+.|..++.+||.+...
T Consensus 77 aE~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTAS--LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777763 33444444443 444578889999999999999999999999999998765
No 82
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=79.73 E-value=3.6 Score=26.49 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
++.||..|..-++|+..|..+++.|++++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 56788888888888888888888777654
No 83
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.53 E-value=5.2 Score=43.48 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
+.+|+.++..|+.+...+...+..++.+...|..+-.+|+
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333
No 84
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.73 E-value=15 Score=29.71 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 210 QTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 210 q~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
++++..|..+|..+..++..|..|-..++.-++.+...-.-.-+....++.+|..||..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 455566666666666666555555555555555554433333344556667777777654
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.56 E-value=3.7 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
++..|+.+...|..+|.+|+.+|+.|+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788888888887665543
No 86
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.54 E-value=3.2 Score=31.59 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.||.+|+..|+.|+.|+..|..++.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 87
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=78.41 E-value=25 Score=28.45 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ---YQYLKKEAERLKVSLA 270 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~---~E~L~~Ei~RLk~~~~ 270 (307)
|.+++-...+-+--..|++....|......+++..+.|.|-+---+++ +-.|+.||-|||.+..
T Consensus 41 qaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 41 QSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334443344444445678888899999999998888888765555544 4568899999998864
No 88
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=78.22 E-value=2.5 Score=28.31 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021792 255 YQYLKKEAERLKVSLAI 271 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~~~ 271 (307)
+..|+.||.|||.+.|+
T Consensus 17 ~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 17 LWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 45678888999888775
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.17 E-value=32 Score=34.31 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=48.1
Q ss_pred CccchhhHH--H-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh-----------hh
Q 021792 176 HNAETKMTK--R-QFGQRSRVRK-------LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM-----------EN 234 (307)
Q Consensus 176 ~~~DpKR~K--R-qSA~RSR~RK-------l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~-----------EN 234 (307)
.+.|.|-++ - .-++..+.|+ +..|.+|..+...|+.+...|.++...+.++-..+.. +-
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~ 118 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQY 118 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccH
Confidence 577888777 1 1122233332 3455666666555555555555555554444333221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
.+|+.++..|..+..-.++....+++|++.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777766666555566666666644
No 90
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=77.91 E-value=1.7 Score=30.97 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.||.+||.+|..|+..+..|...|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999988877653
No 91
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.38 E-value=9.7 Score=29.99 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
++.+.+||..-..|..++..+..+...|.++-...-.+=+.++.++-.+..+..--+........-+.+||
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444
No 92
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.21 E-value=23 Score=28.99 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQT---LQADLGARVALLLQQHV-------SLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~---E~a~Ls~~l~~L~~~~~-------~L~~EN~~LK~rl~~l~qq 247 (307)
.|.=.++=.+|...=..|+.-|.+|...+..+.. ++..|.+|+..+..++. .+..|.-+|..+|..|..+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 4444466677888878899999999999888888 67778888877766553 3455555555555544443
No 93
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=76.78 E-value=5.8 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLI 250 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~l 250 (307)
..||..|...++.+.. .+.....|.+.|..|..||+.||-+++.
T Consensus 38 vdYI~~Lq~e~~r~~e-----------~e~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKD-----------LENRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5687777655554432 3344456788999999999999998864
No 94
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.58 E-value=4.9 Score=40.88 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
.-.+-+|-.|||++++.|+.++.....+|..|+..-..+..|=..|.
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677788888888888887777888877766655555444443
No 95
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.12 E-value=8.8 Score=27.47 Aligned_cols=24 Identities=0% Similarity=-0.083 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
|.+|..+|+.|.+++..|+..|..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 96
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=76.08 E-value=12 Score=28.97 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
+=+.+|-.+++.|+.|++.|..+|..++.+-..|....+++=..|
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766555555544444444333
No 97
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.76 E-value=35 Score=34.04 Aligned_cols=69 Identities=7% Similarity=-0.035 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
...|.+|..+-..|+.+...|.++...+.++-..+.. +-.+|+.++..|..+..-.+..-..+++|+..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655555554433322 22456677776666665555556666666654
No 98
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.74 E-value=4.5 Score=30.84 Aligned_cols=30 Identities=17% Similarity=-0.016 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
..||..|+.+++.|+.|...|..+...|.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998888887776655555554433
No 99
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.28 E-value=15 Score=29.85 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
|.||-+.|+.|+.|+.+|..+...|+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555555555544444443
No 100
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.22 E-value=2.3 Score=28.44 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021792 254 QYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~~ 271 (307)
.+..|..||.|||.+.|+
T Consensus 16 ~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 16 EVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 356788888999888775
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.13 E-value=29 Score=28.49 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 190 RSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 190 RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
+=+..-.+||.+|+.+|..|++|...-..+ ......||..|+..++.+
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 345555667777777776666665554433 334455666666666555
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=74.85 E-value=24 Score=34.56 Aligned_cols=70 Identities=14% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLS---MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~---~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
...|.+|..+-..|+.+...|.++...+.++-..+. .+-.+|+.++..|..+..-.++....+++|++.+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555543332 2235677777777776666666666677776443
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.66 E-value=18 Score=27.13 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 183 TKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 183 ~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.||..--|.=.|- |=.--|..|+.|+.++..|.. .+..|..||..|+.+|..|..+.
T Consensus 10 ~kR~~qNR~AQRa--fReRK~~~i~~LE~~v~~le~-------~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRA--FRKRKEDHLKALETQVVTLKE-------LHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 445667777777666655554 44457888888888888776654
No 104
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.52 E-value=11 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGAR 219 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~ 219 (307)
.+++||..|.+|++|+.+|..+
T Consensus 4 lvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHh
Confidence 4678888888888888887653
No 105
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.19 E-value=33 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
|..|+..++.|++.++.|-..|..+++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887766554
No 106
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.09 E-value=4.2 Score=32.80 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
.|..+|.+|+.|+..|..++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 107
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.91 E-value=15 Score=30.02 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 021792 257 YLKKEAERLKVSL 269 (307)
Q Consensus 257 ~L~~Ei~RLk~~~ 269 (307)
+|..||---|.+.
T Consensus 116 ~Ld~EIatYRkLL 128 (131)
T 3tnu_A 116 RLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhH
Confidence 5666776655553
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.88 E-value=11 Score=29.10 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
.|..+|..|+++-..|+-.+-++-
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333333
No 109
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.52 E-value=4.7 Score=28.76 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
|..|+.|+..|..++. .|..++.+|+.+|
T Consensus 21 ~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYE-------AIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4444444444444444 3355555555554
No 110
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.46 E-value=5.5 Score=26.36 Aligned_cols=17 Identities=18% Similarity=0.002 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021792 255 YQYLKKEAERLKVSLAI 271 (307)
Q Consensus 255 ~E~L~~Ei~RLk~~~~~ 271 (307)
+..|..||.|||.+.|+
T Consensus 17 ~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 17 LYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45788899999999886
No 111
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.34 E-value=19 Score=39.03 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
..+.+|+.++..++.+...|..++..|+++.
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 112
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.20 E-value=12 Score=30.87 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 205 TVEYFQTLQADLGARVALLLQQH----VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~----~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
-|..|+.|+..|..+|..+..+. ..|....+.|...|+.-.++++---..++.|+.|++.|+....
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~ 85 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555554443222 3334444444444444443433334457888888887765444
No 113
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.05 E-value=6.9 Score=25.89 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+.+||.||+.|-.++..|..+++.|..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999987743
No 114
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.96 E-value=27 Score=34.75 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 021792 253 GQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~ 270 (307)
.+.+.|+..|++|.....
T Consensus 175 ~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777887776554
No 115
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.13 E-value=33 Score=29.43 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
||+|..|+.++-.|-.+|..- ...+..+...|...-.+..--.+=+-.|..||.|||.
T Consensus 97 ERsv~kLEk~id~lEd~L~~~-------Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQ-------KLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Confidence 444444444444444444332 3333444444443333333334556778999999985
No 116
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.60 E-value=39 Score=29.00 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
|+..+.....|...|..+++.-...+.....++..+...|+.|.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444455555555554443
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.37 E-value=7.6 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 219 RVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 219 ~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.+..|+.....|..+|..|+.+|+.|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777777777765543
No 118
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=70.21 E-value=2.2 Score=30.66 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGA 218 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~ 218 (307)
..||.+||.+|..|+..+..|.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999887766543
No 119
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=70.03 E-value=47 Score=28.41 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=19.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 227 HVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 227 ~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
-..+..+=+.|..+|+..+.-+.+-+---..|.++|.+|
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555444455555565555
No 120
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.68 E-value=3.6 Score=31.77 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
+..|+.+|..|..+...|..||+.||
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445444444445555555544
No 121
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.54 E-value=29 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
|..|+..|..|+.+...|...|-.|.+.+..|.-..+..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 122
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.22 E-value=3.9 Score=29.50 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
+..|+.....|..+|..|+.+|..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666654443
No 123
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.00 E-value=53 Score=31.76 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLS-MENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~-~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
...|.+|..+-..++.+...|.++...+.++-..-. .+-.+|+.++..+..+..-.++....+++|+..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777887777888888777777777766543211 223466777777666665555555566666543
No 124
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.65 E-value=46 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
|.||-+.|+.|+.|+..|..+-..|+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55666666666666655555544443
No 125
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.43 E-value=47 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 216 LGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 216 Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
....++.|+.+...|..+|..|+.+|-.|+|.
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888888888888888775
No 126
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=68.23 E-value=11 Score=24.73 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
++.|..+++.|.++..+|+-.-++||+++.+|
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777788888888888999888776
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.32 E-value=38 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
+..|-.++++.+.|+..|..+|..+.++.
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445555555555555555444433
No 128
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.11 E-value=26 Score=26.96 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+..|..+|..+..++..|..|-..++.-++.+...-.---+.-..++.||..||...
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456677777666666666666555555555555444444456677778888887644
No 129
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=66.67 E-value=5.5 Score=36.86 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~ 221 (307)
|++++..|++.|..|..+++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk 78 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLK 78 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 130
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.65 E-value=11 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQ 245 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~ 245 (307)
..||.+|+.+++.|+.+.. .|..+|..|+.+|+.|.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~--------------~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEED--------------LLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhh
Confidence 4677777777777665543 34566677777776653
No 131
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.50 E-value=45 Score=26.15 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~R 264 (307)
++|.+...+..|+++|..+|..++.+...+...=...+..|+.-++.+.--++...+|.+=|+-
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555544444444443333444455555555555555566666655543
No 132
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=66.01 E-value=57 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
.+|+.+++.|..++..|..++.-+.++.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444
No 133
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.96 E-value=35 Score=26.18 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..+||.+...|..+...|..+++-++..+..|.....+|-.+|..|
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665555555555555555555555444
No 134
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=65.90 E-value=16 Score=33.61 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
...|.|+..||+.|+.--..+..+|+-|+++-..|..+-..++.||+-++..
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888888888888888888888888888888888887766543
No 135
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.89 E-value=56 Score=31.09 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.+--.+||..|..++.+..++..++.
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~~~~~~ 391 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAELDGTLQ 391 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33344555555555544444444443
No 136
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.85 E-value=18 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+.+..||.+|..|+.+++.|..+|+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999986
No 137
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.75 E-value=8.1 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=7.6
Q ss_pred hhhhhhHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQ 245 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~ 245 (307)
.|..||.+||.+++.|.
T Consensus 23 aLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 138
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=64.57 E-value=12 Score=32.08 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=16.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 226 QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 226 ~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+...|..+..+|...++.|+.+.+|.||...-|.+++.-.|.+..+
T Consensus 88 ~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 88 ELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555666777777777777777777777777766665443
No 139
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.40 E-value=49 Score=25.78 Aligned_cols=33 Identities=9% Similarity=-0.074 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
-..++|.++..++.+...+-.+|..|++....|
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l 56 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333333
No 140
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=64.18 E-value=58 Score=31.98 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
=|.+||..|+.|.+-.++...-|..|+
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik 65 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQ 65 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 478888899888888888777777776
No 141
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.14 E-value=12 Score=28.80 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 021792 252 EGQYQYLKKEAERLK 266 (307)
Q Consensus 252 da~~E~L~~Ei~RLk 266 (307)
...++.|+.+|+.|+
T Consensus 72 ~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 72 RKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 345666777776664
No 142
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=63.84 E-value=62 Score=26.83 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
|......|..+...+.....-|+.....|..+|..|+.++..+.++.
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444555555555555555555433
No 143
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=63.41 E-value=70 Score=27.27 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 021792 210 QTLQADLGARVALLLQQH 227 (307)
Q Consensus 210 q~E~a~Ls~~l~~L~~~~ 227 (307)
|.|++.|.+++..+++..
T Consensus 59 QKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 345566666666666544
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.31 E-value=8.8 Score=37.43 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
...|...+..|..++..|+++...|..|+..|+.++..+..+ .+.+++|+.+|+.
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 345566667777777777777778888888887766655433 3457778888875
No 145
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.99 E-value=81 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
|||..|..++..+..|..++.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~ 66 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQ 66 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
No 146
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.58 E-value=54 Score=25.65 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
+..|+..++.|..+-+.|..+|..|..+...|..|-.++......|.+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 567888889999999999999988877777777777777766666654
No 147
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=61.18 E-value=2.7 Score=33.47 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.2
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021792 181 KMTK-RQFGQRSRVRKLQYIAELERTV 206 (307)
Q Consensus 181 KR~K-RqSA~RSR~RKl~Yi~ELE~kV 206 (307)
+|.| |..|++.|.||+.-+.+||..|
T Consensus 66 RR~KNr~AA~~CRkrK~~~~d~l~~~~ 92 (92)
T 1skn_P 66 RRGKNKVAARTCRQRRTDRHDKMSHYI 92 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhccC
Confidence 3444 9999999999999999998754
No 148
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.91 E-value=18 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 021792 231 SMENSKLKQKIARVQK 246 (307)
Q Consensus 231 ~~EN~~LK~rl~~l~q 246 (307)
..|-.+||..|.+|.|
T Consensus 15 kkeiaalkfeiaalkq 30 (33)
T 4dzn_A 15 KKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344445555555443
No 149
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=60.74 E-value=5.9 Score=36.06 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=27.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
-++||.+|.--+----- +|-++--..++.+..+..++..++..++. ||++++.+|+.|+.+
T Consensus 117 P~~~Rt~~iLSalINF~--~FRE~~~~~~~e~~~~~e~~~~~i~ql~~-------En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFI--HFREACRETYMEFLWQYKSSADKMQQLNA-------AHQEALMKLERLEKE 177 (250)
T ss_dssp CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTHHHHHHHHHHH-------HHHHHHHSCC-----
T ss_pred CchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 47899985422111100 02222222344555555566666665543 455566666666554
No 150
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=60.71 E-value=3.6 Score=33.75 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
++||+.+++.||-||..|+.+|
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555
No 151
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=60.68 E-value=12 Score=26.67 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=12.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
..|+.+...|..||..|+.++..|.+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555543
No 152
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=60.50 E-value=1.2e+02 Score=30.83 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=46.6
Q ss_pred cchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVR-----KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~R-----Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.|.|+.+-+.|---|+| +...|..+|.-|+++|+..+.+..+....++....+..|...++-.+..+.|.
T Consensus 339 ~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 339 GDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45666665544444444 45667778888888888888887777777777766666766676666555544
No 153
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.76 E-value=36 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
||..|..+|..|+.+...|..||.+||.-+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778777777778888888877543
No 154
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.73 E-value=30 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+||.++..|+...+-+-..|..|+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555555554443
No 155
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.65 E-value=30 Score=34.50 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQ---HVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~---~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
+|..+++.|+++...++.+|..+... ...|..|=++||.+|+.|+.+..
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777665432 35677777788888877776654
No 156
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.38 E-value=15 Score=23.62 Aligned_cols=9 Identities=56% Similarity=0.493 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 021792 258 LKKEAERLK 266 (307)
Q Consensus 258 L~~Ei~RLk 266 (307)
|+-||-.||
T Consensus 21 lkfeiaalk 29 (33)
T 4dzn_A 21 LKFEIAALK 29 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.11 E-value=51 Score=26.34 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
-|..||.++.....|...|..+++.-...+.....+++.|...|+.|..
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999999999988888888888889999888888864
No 158
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.09 E-value=19 Score=35.22 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
=-+|..|||+++..|+..+..-...|..|+..-..+..+=..|...|
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999887777788888777666555555554444
No 159
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.66 E-value=8.9 Score=37.51 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 021792 256 QYLKKEAERLKV 267 (307)
Q Consensus 256 E~L~~Ei~RLk~ 267 (307)
+.+++||.++|.
T Consensus 63 ~~~~~~i~~~~~ 74 (434)
T 4b4t_M 63 KDNKEKIKNNRQ 74 (434)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHhccC
Confidence 334455555543
No 160
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.39 E-value=1.3e+02 Score=29.84 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
...|.+|..+-..|+.+...|.++...+.++-
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677766666666666666665555544
No 161
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.81 E-value=64 Score=25.04 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 218 ARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 218 ~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
.+|..|.++-..+..||..|...+..|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444544444444443
No 162
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=57.74 E-value=28 Score=33.72 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
...|.+|..+-..|+.+...|.++...+.++-..+.. +-.+|+.++..+..+..-.+.....+++|++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777776666655443321 123455555555555554455555666666444
No 163
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=57.71 E-value=42 Score=27.68 Aligned_cols=61 Identities=18% Similarity=0.031 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhhhhhhhhhHHHH
Q 021792 178 AETKMTKRQFGQRSR---VRKLQYIAELERTVEYFQTLQADLGARVA--LLLQQHVSLSMENSKLK 238 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR---~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~--~L~~~~~~L~~EN~~LK 238 (307)
-+.-|++++..+-.| ++|++-+.|+|++|..+..+--.+..++. ++++....=...|+.++
T Consensus 39 ~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV~m 104 (115)
T 3vem_A 39 HELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLVIM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778776666555 68999999999999888888777766665 44433333333444433
No 164
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=57.56 E-value=49 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
+..||.++..++...+.++.++..+
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~ 31 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERV 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4456777777777666666655544
No 165
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.94 E-value=28 Score=33.52 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
|.+|+.++..|+.+...|..+|. .+..|+.+|++++...+ .++..+.-.+.+--..+|+..=
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~---~~rr~l~n~~~elkgnIrV~vR 66 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIK-------DTELGMKELNEILIKEE---TVRRTLHNELQELRGNIRVYLR 66 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCeEEEEE
Confidence 34555555555555544444444 44666777776655443 3444444445544455666543
No 166
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.51 E-value=9.5 Score=28.67 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.1
Q ss_pred hhhhHHHHHHH
Q 021792 231 SMENSKLKQKI 241 (307)
Q Consensus 231 ~~EN~~LK~rl 241 (307)
..+|.+|+.+|
T Consensus 67 ~~~~~~L~~~l 77 (83)
T 1nkp_B 67 KRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 167
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.49 E-value=52 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
||..|..+|..|+.+...|..||.+|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 168
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=56.40 E-value=34 Score=24.21 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 229 SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|..=|..|-.+++.|+..+ ..++.||+||+.+..+
T Consensus 8 kLKe~n~~L~~kv~~Le~~c-------~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSC-------SEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHH
Confidence 33444445555555554443 2344677777776654
No 169
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=56.31 E-value=44 Score=33.32 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQ-----------QHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~-----------~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
+|..+++.|+++...++.+|..+.. +...|..|=++||.+|+.|+.+..- +.+.|...+-+|=.+
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~---~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ---LEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCC
Confidence 4556677888888888888876553 3358899999999999999876553 334444555544333
No 170
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.99 E-value=49 Score=33.74 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=35.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCC
Q 021792 229 SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKTYFGTNSA 286 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~~~~~~~~ 286 (307)
.|.-.-..||++|+.--++.+.-....+.+..||+||=+.... ..|.--|+|.-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi----qirsCKgsCsr 167 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI----KIRSCRGSCSR 167 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHGGGTBSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccccc
Confidence 3333444556666665555555666677888899999887765 45666677763
No 171
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.77 E-value=10 Score=28.43 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=4.1
Q ss_pred HhHHHHHHHH
Q 021792 213 QADLGARVAL 222 (307)
Q Consensus 213 ~a~Ls~~l~~ 222 (307)
++.|..-+.+
T Consensus 49 ~~iL~~Ai~Y 58 (80)
T 1hlo_A 49 AQILDKATEY 58 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 172
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=55.71 E-value=70 Score=24.84 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
+.++|.+...+..++.+|..+|..++.+...+...=..++..|+.-+..+.--++...+|.+=|+
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554444443334444444444444444444455544443
No 173
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.14 E-value=55 Score=23.46 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=21.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 222 LLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 222 ~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.|-++-..|..||..|+..|+.=..+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 456777888999999999998766553
No 174
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=55.00 E-value=26 Score=29.45 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
||.+..++...+..+-.++..+ ...+...|..|+.++++|+....|-.+-...=++-.--|+.+|..
T Consensus 28 Leek~~~~e~~~~~~~~Elee~---kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~ 94 (130)
T 3cl3_D 28 LEGRARAASEQARQLESEREAL---QQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQ 94 (130)
T ss_dssp --------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333322 233566778888888888877777666655555555556666543
No 175
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=54.52 E-value=23 Score=31.78 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+|.|+++--+.-.+-..|+.....|.+||..|+.+|+.|+..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 566777777777777778888888888999888888887653
No 176
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.36 E-value=13 Score=31.40 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSM---ENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~---EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.|.....++.|.-.|++. +..+-+.|... +...++.|...|+.+..=++++.+.+...+..||.+.
T Consensus 65 aE~~~~~ie~ElE~LTas--LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTAS--LFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666663 23444444333 4445788888888888888888888888888888764
No 177
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.21 E-value=28 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 236 KLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 236 ~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
....+|+.++.+..-+|.+...|+.|+..+|.+
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334566777777777777777777777777653
No 178
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=53.51 E-value=13 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
|+.++...+..|..|+..|..+|..|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544
No 179
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.16 E-value=52 Score=26.63 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
+-+...|..|..|+.++.+|..+|..
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666643
No 180
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=52.95 E-value=11 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGAR 219 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~ 219 (307)
-|.|||.++..|+.||+-|+.-
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888877653
No 181
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.86 E-value=93 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
..|+.||++...|..+|+.+......|
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~L 32 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQEL 32 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444433
No 182
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.79 E-value=45 Score=32.67 Aligned_cols=46 Identities=7% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQ---HVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~---~~~L~~EN~~LK~rl~~l~qq 247 (307)
|..+++.|+++...++.+|..+... ...|..|=++||.+|+.++.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443221 234455555555555555444
No 183
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=52.69 E-value=10 Score=27.58 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLG 217 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls 217 (307)
.+.+..||..||.+|..|+.....|.
T Consensus 53 ~~~~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 53 ELLKDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456899999999999998777664
No 184
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=52.31 E-value=1.4e+02 Score=29.87 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHH---HHHHHhHHHHHH----HHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAEL----------ERTVEY---FQTLQADLGARV----ALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~EL----------E~kVq~---Lq~E~a~Ls~~l----~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
=.++|+--+-|+...... |..++. ||++-++|+.+| +.|++-....-.|=..|. +|..|.|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~~~~~il~p~~l~-~l~~l~q~ 98 (473)
T 1uur_A 20 LLSEQEQTLVQMIHEQSLLLNRLPPTLDENSLAPLKSLSQKQITLSGQMNTEMSALDATKKGMILEPTDLA-KLFALKQD 98 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHh-HHHHHHHH
Confidence 577888888887665432 556666 888988887765 445555555555666666 77777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021792 248 KLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 248 ~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
..+.--+=..|..||++|=...
T Consensus 99 L~~~~~~l~~l~~el~~~l~~~ 120 (473)
T 1uur_A 99 LQIQFKQLSLLHNEIQSILNPQ 120 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHhhhhHHHHHHHHHHHHHhcc
Confidence 7777777777888888875544
No 185
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.30 E-value=76 Score=24.24 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
-.++..++..+..|+............|......|..|.+.|..++...+--+.--.+....|...|.-|..
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777666666677777777777777777666544444443333444455555555543
No 186
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.03 E-value=38 Score=24.01 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021792 258 LKKEAER 264 (307)
Q Consensus 258 L~~Ei~R 264 (307)
|++||++
T Consensus 42 Lkeele~ 48 (51)
T 3m91_A 42 LREEVDR 48 (51)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 187
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=51.65 E-value=30 Score=25.26 Aligned_cols=36 Identities=31% Similarity=0.245 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 229 SLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.|..-|-.|-.+++-|+.++--+| -||+||+.++-+
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~e-------QEieRL~~LLkq 50 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKE-------QEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 333444444444444444443332 356666665544
No 188
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.20 E-value=40 Score=24.02 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
.||+.|.+++.+|+.+|..|..+-..|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777765544333
No 189
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=50.84 E-value=54 Score=23.15 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
|.+|..|..-+..|..+|+.|+..+..+.-|+--|+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 567777777788888888888888887777754443
No 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.17 E-value=37 Score=32.88 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
..+|+.|...|..++..|++....+..|+.+++++|.. +...+..+.-.+..--.++|+..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~~~~rr~l~n~~~~l~gnIrV~v 65 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ---SNMERKELHNTVMDLRDNIRVFC 65 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCEEEEE
Confidence 36777778888888888888888888888888887654 33444444444444445566554
No 191
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.09 E-value=1.9e+02 Score=28.16 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
++.++++-.+|+.+.+++..|..-|...
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555666655555555444433
No 192
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=50.06 E-value=91 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 236 KLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 236 ~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.|..=|+.+-+--.---+--+.|..||+++|..|
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Y 81 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQY 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333445566666777776655
No 193
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.78 E-value=58 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 021792 186 QFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSM 232 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~ 232 (307)
-.+.-.++|+++. +.|.....++.|.-.|++. +..+-+.|...
T Consensus 31 L~~~l~eE~~~R~--~aE~~~~~ie~ElEeLTas--LFeEAN~MVa~ 73 (97)
T 2eqb_B 31 LREDIAKENELRT--KAEEEADKLNKEVEDLTAS--LFDEANNMVAD 73 (97)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3333344444443 3456666777777777763 23444444333
No 194
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=49.14 E-value=21 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 238 KQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 238 K~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
..+|..|+.....+|++...|+.++.+++.++.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457888999999999999999999999998886
No 195
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.87 E-value=14 Score=23.06 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=12.8
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq 247 (307)
.|.-||.+|.++|.+|.|.
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 4566777777777776654
No 196
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.62 E-value=45 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
|.+||..++....++..|..++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 197
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.21 E-value=96 Score=24.21 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
+.-..++|.+++.++.+...+-.+|..|++....|..|=-.+..+|....+.....+-.-...+.||.-|
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555554444444444444444333333333333334444433
No 198
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=47.70 E-value=1.1e+02 Score=24.70 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKK 260 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~ 260 (307)
|--.|-..+..|+.++..|...++..-.+|..|+.+..--.+.|..|..
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444444554444443333333333333
No 199
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=47.46 E-value=19 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.2
Q ss_pred hhhhhhHHHHHHHH
Q 021792 229 SLSMENSKLKQKIA 242 (307)
Q Consensus 229 ~L~~EN~~LK~rl~ 242 (307)
.|..||.+|+.+|+
T Consensus 65 ~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 65 QLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444443
No 200
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=47.34 E-value=58 Score=30.70 Aligned_cols=76 Identities=13% Similarity=0.009 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.--..+|..|-..++..|.+...+...|..+. ..|......|+.....|.....=+.+..+.|++||+.|+..+..
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~---~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~ 194 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLR---DSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNY 194 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 33356677777777777777777777666553 35555666677777777777777778889999999999887763
No 201
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=47.01 E-value=22 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
+|..+...++..+.-|.+=+..-+..+..|+.+|+-||..|-.++.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455455555555555555566666666666666555543
No 202
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=46.85 E-value=58 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
||..|..+|..++.+...|..||.+|+.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677666666677777776653
No 203
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.40 E-value=78 Score=24.57 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=17.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 228 VSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 228 ~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
..|.-|=+.||.|+..|+.+..--+---.+-++||.-|
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~L 59 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQL 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555555555555555555444333333333333333
No 204
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.77 E-value=1.3e+02 Score=29.38 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKTYFGTNS 285 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~~~~~~~ 285 (307)
..||.+|..--+...+-....+.+..||+||=+..-. -+++-.++|-
T Consensus 123 ~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~----c~~~C~~sC~ 169 (390)
T 1deq_A 123 EILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI----KIRSCKGSCS 169 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcccccccc
Confidence 3344444444444445556678888999999888733 4566666665
No 205
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.54 E-value=81 Score=31.45 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh----------hhhhhhh-HHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH----------VSLSMEN-SKLKQ--------KIARVQKEKLIMEGQYQYLK 259 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~----------~~L~~EN-~~LK~--------rl~~l~qq~~lkda~~E~L~ 259 (307)
|.+||..|+.|.+-.++...-|..|+... ..++.+= ++|.+ -+...+...+....+.+.+.
T Consensus 97 l~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 176 (461)
T 3ghg_B 97 VDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLR 176 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHH
Confidence 66788888888776666666666555321 1111111 12211 11123344444456778899
Q ss_pred HHHHHHHHHhcC
Q 021792 260 KEAERLKVSLAI 271 (307)
Q Consensus 260 ~Ei~RLk~~~~~ 271 (307)
..|+.|+.+..+
T Consensus 177 ~~i~~l~~~~~~ 188 (461)
T 3ghg_B 177 SKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988774
No 206
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.54 E-value=1.1e+02 Score=24.03 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
+|..|-.+=-+|.+-+++-+-+...+++ ...|..||..|..+++.|.++ +..+..|+..+|.-+
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q-~~~LE~e~~~L~~e~~~L~~e-------~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQ-KHHLENEKTQLIQQVEQLKQE-------VSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3455555556777777777777776643 467777777777777777654 455666666666654
No 207
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.93 E-value=26 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLK 238 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK 238 (307)
||..|-..|+.-+.+-..|..||.+|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555666666666666666777777665
No 208
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=44.90 E-value=61 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 232 MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 232 ~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
.++..-+..++..+.+.....+..+.+++++..++..+..
T Consensus 107 ~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 107 QTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335556666666666666677777777777766554
No 209
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.78 E-value=23 Score=22.50 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=10.5
Q ss_pred hhhhhhHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARV 244 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l 244 (307)
.|..||+.||.+++.|
T Consensus 10 sleaenkqlkakveel 25 (31)
T 1p9i_A 10 SLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777766654
No 210
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=44.46 E-value=40 Score=25.66 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..|.|+..||.-|+.--..+..+|+-++++-..|..+=..++-||+-+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777666666655555555555433
No 211
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=44.44 E-value=1.7e+02 Score=26.58 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021792 186 QFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQ 254 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~ 254 (307)
.|-+-+|.||..-..++.+ |.... --+.+|..|+++-..+.+||...--+|.++..+ .+|+++
T Consensus 104 ~svqp~R~~R~~l~~~I~k----Lk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~-~lKEa~ 166 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIAH----LKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITRE-KLKAAY 166 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH----HhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH-HHHHHH
Confidence 4556666666655555432 22211 113455666666666666665555566665553 345543
No 212
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.09 E-value=58 Score=26.72 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQ----ADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~----a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+.|+.+.+..+..+-... ..|..+|..|.++...|..|...|+.++..
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp THHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355656555555554433 245555555544444444444444444433
No 213
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=44.07 E-value=45 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 207 EYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 207 q~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
..|++|.+....++. .|+.+..+||..++.|+++
T Consensus 7 ~al~~eL~~~~~ei~-------~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 7 VAIQAELTKSQETIG-------SLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 4455666666666666655
No 214
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.95 E-value=83 Score=28.49 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=39.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSME 233 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~E 233 (307)
.+...+|+.-|.|-+.-|. -...|+.+++..+.|..++.++|+...++...++..
T Consensus 160 asde~Ik~yLa~R~~~lK~-kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG-TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577777777776664 456789999999999988888888776665555443
No 215
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.67 E-value=36 Score=26.26 Aligned_cols=25 Identities=36% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHH
Q 021792 215 DLGARVALLLQQHVSLSMENSKLKQ 239 (307)
Q Consensus 215 ~Ls~~l~~L~~~~~~L~~EN~~LK~ 239 (307)
.|-++|..|.-++..|..|+..+++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 216
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.52 E-value=78 Score=31.51 Aligned_cols=25 Identities=12% Similarity=-0.098 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+|..+++.|+++...++.+|..+..
T Consensus 48 ~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 48 RTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666665433
No 217
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=43.46 E-value=1.2e+02 Score=23.94 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhcC
Q 021792 256 QYLKKEAERLKVSLAI 271 (307)
Q Consensus 256 E~L~~Ei~RLk~~~~~ 271 (307)
+.-++||.|||.-+-.
T Consensus 71 q~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 71 DAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456788888876543
No 218
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.18 E-value=80 Score=21.86 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARV 244 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l 244 (307)
..||++|..+..+...+..++..+......+..+=+..+..|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 219
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.14 E-value=16 Score=26.03 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
..+......|..||.+|+.+++.++.+
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666777888888887776653
No 220
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=42.71 E-value=62 Score=25.35 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=22.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021792 222 LLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 222 ~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~ 269 (307)
.++..-..|..|=..+|..++..-++-+--=-+.-+|..||.--|.+.
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555554443333211112345777777777665
No 221
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.86 E-value=24 Score=29.75 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 021792 208 YFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK 246 (307)
Q Consensus 208 ~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q 246 (307)
.+..|...|..+++.-...+.....++..|...|+.|..
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444566666778888888877764
No 222
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.67 E-value=14 Score=30.30 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=15.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHH
Q 021792 221 ALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 221 ~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
..|..+-..|.+||++||.+|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455679999999999973
No 223
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.37 E-value=27 Score=22.43 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 222 LLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 222 ~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.|+++-.....||-.|.+.+..|++++
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 334444445667777777776666553
No 224
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=40.81 E-value=1.9e+02 Score=25.55 Aligned_cols=32 Identities=13% Similarity=-0.097 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSM 232 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~ 232 (307)
+|+.++..|+.++..|..+++.|..+...+..
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333
No 225
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=40.64 E-value=36 Score=21.82 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 021792 229 SLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 229 ~L~~EN~~LK~rl~~l~qq 247 (307)
.|...|-+-|+++++|++.
T Consensus 12 alkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 12 ALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 3455555666666666554
No 226
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.12 E-value=21 Score=22.19 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
||-.-..|+..++.|..+|+.
T Consensus 5 lefendaleqkiaalkqkias 25 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 343344444444444444433
No 227
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.91 E-value=1.3e+02 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSL 230 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L 230 (307)
+.+++.++..|+.....+..++..+.+....|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555444443333
No 228
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.14 E-value=31 Score=32.16 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
.++.|+.++..|..+|+.|++....+.. ..+++++.|++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k---~n~~rl~~Lqk~ 225 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK---ANAERLKRLQKS 225 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH
Confidence 4455555555555555555444333333 234444444433
No 229
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=39.06 E-value=98 Score=27.48 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 192 RVRKLQYIAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 192 R~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
+.+|..-|.-|.+|+..|+.|-..|..++..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999998888763
No 230
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.79 E-value=2.5e+02 Score=27.85 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 021792 199 IAELERTVEYFQ 210 (307)
Q Consensus 199 i~ELE~kVq~Lq 210 (307)
|.+||.+|+.|.
T Consensus 102 LqeLe~~l~~ls 113 (464)
T 1m1j_B 102 LRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 231
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.72 E-value=21 Score=24.61 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l 220 (307)
+||.+|.+|++...+|.+.|
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444
No 232
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION coordination, protein export, TAA, membrane protein, polar core; 1.85A {Salmonella enterica subsp}
Probab=38.68 E-value=1.5e+02 Score=23.74 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh---------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQH---------------------VSLSMENSKLKQKIARVQKEKLIMEGQYQ 256 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~---------------------~~L~~EN~~LK~rl~~l~qq~~lkda~~E 256 (307)
.|+|+=.|+-.++.+-+..-+||.-..... ..-+..=..|-..+..|.+.+.+=+.-.-
T Consensus 7 ~~~~~~~~~~~~~~~~aVNGSQL~~Tnd~vA~NTtdIatnTtNIa~nT~nIATNTTnItNL~dsv~~L~DDALLWn~~~~ 86 (99)
T 2wpq_A 7 KIEEILSKIYHIENEIARIKKLIFDTNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSMKQIEDKIEEILSKIY 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhcchhhhcccchhhhhhhhhhhhhhhhhccchhhhccccccchHHHHHHHHhHHHHHHcchhh
Confidence 366677777788888887777776554221 00011223567889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 021792 257 YLKKEAERLKVS 268 (307)
Q Consensus 257 ~L~~Ei~RLk~~ 268 (307)
.++.||-|||.+
T Consensus 87 ~~~~~~~~~~~~ 98 (99)
T 2wpq_A 87 HIENEIARIKKL 98 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc
Confidence 999999999986
No 233
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=38.22 E-value=15 Score=23.50 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
|..||.|+..|+..-+.-..+|+.|
T Consensus 2 iaaleqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555544444444
No 234
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.13 E-value=1.5e+02 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHhh
Q 021792 186 QFGQRSRVRKLQYIAELERTVEYFQ---TLQADLGARVALLLQQH 227 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~kVq~Lq---~E~a~Ls~~l~~L~~~~ 227 (307)
.+|-..=..|+..|.+|-..+..++ ..+..|.+|+..+..++
T Consensus 12 ~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 12 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544444444 44455555555554443
No 235
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.00 E-value=98 Score=21.39 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 021792 193 VRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 193 ~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~ 242 (307)
.+...++.+++.+|..+..+...+..++..+.......+.+=..++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666556655554
No 236
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.88 E-value=28 Score=33.83 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
.+|..+++.|+.+..-|..+..
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e 66 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQED 66 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444443333
No 237
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.72 E-value=61 Score=25.25 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 021792 233 ENSKLKQKIARV 244 (307)
Q Consensus 233 EN~~LK~rl~~l 244 (307)
||..|..+|+.+
T Consensus 39 EN~~Lh~~ie~~ 50 (83)
T 1wlq_A 39 ENEKLHKEIEQK 50 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 238
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.54 E-value=1.3e+02 Score=22.47 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 213 QADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 213 ~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
...+..++.........+..|-..|+.+|+.|+.+.
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555556666666665544
No 239
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.25 E-value=1.2e+02 Score=23.92 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
++-|.+|+..++..+..-..|..-+..+.++
T Consensus 21 ~~Ki~el~~ei~ke~~~regl~Km~~vY~~n 51 (98)
T 2ke4_A 21 QQQLEERSRELQKEVDQREALKKMKDVYEKT 51 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456677777777666666666666655443
No 240
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=37.12 E-value=1e+02 Score=27.74 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
|+=.|++++.|..++..|..+|+.| ...-.+|-.+-.++..+.....--+-+.+.+..=...|+..++-
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~L----i~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l 135 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQL----MDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQV 135 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4566777888888888888888766 33456777777777777766554333333333222334444443
No 241
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=36.98 E-value=60 Score=25.02 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 212 LQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
||..|..+|..++.....|..||..|+.=+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777788888776543
No 242
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=36.80 E-value=23 Score=27.37 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQK---EKLIMEGQYQYLKKEAER 264 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~q---q~~lkda~~E~L~~Ei~R 264 (307)
+.+.||-.+|++||+|..+- ...++++..|.- .|..+|+.++| +-+++..++|.--..|..
T Consensus 12 ~~~~e~k~kv~~LQ~eLdts----E~VQrDFVkLSQ---sLQvqLE~IRqadt~~qvr~Il~e~~l~di~~ 75 (79)
T 1tu3_F 12 QLMFEEKNKAQRLQTELDVS----EQVQRDFVKLSQ---TLQVQLERIRQADSLERIRAILNDTKLTDINQ 75 (79)
T ss_dssp ---------CHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHTCCSHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHccCccchHhh
Confidence 44566677777777666443 235666666664 66667766665 345555555554444433
No 243
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=36.58 E-value=69 Score=28.85 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 220 VALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKK 260 (307)
Q Consensus 220 l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~ 260 (307)
|++.+.+-..|+.+|..|+.+|..|...+.-.|++.+.+.+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~ 107 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRR 107 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666665555554444443
No 244
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.56 E-value=1.3e+02 Score=22.37 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 204 RTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 204 ~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
.|++.|+.+.-....++..++.+.......+..+-..|.+|...-
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444333333333334444443333
No 245
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=36.49 E-value=1.5e+02 Score=23.06 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQY 257 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~ 257 (307)
..|+.+|..|+.+...|..+|..+..+-... --+..++..|..|-.=--|||+=+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~-~~~~~~~~hI~~Lh~YNeiKD~gq~L 60 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNR-DAKQTVQKHIDLLHTYNEIRDIALGM 60 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666666666666666665553322110 02467788888887777777775544
No 246
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.48 E-value=32 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
+-||..|..|++-+..|..++..|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776666543
No 247
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.29 E-value=82 Score=31.62 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
-+|..|||+++..|+..+..-...|..|+..
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~ 140 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNS 140 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666554444555555443
No 248
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.08 E-value=67 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
|++|..|..-+-.|-++|..|+.++....-|+--|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777877777777776666544
No 249
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=35.97 E-value=97 Score=22.02 Aligned_cols=33 Identities=27% Similarity=0.141 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSME 233 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~E 233 (307)
++..+|..|+.+...+..+++...++...|..=
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Llni 36 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNV 36 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555554454444433
No 250
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.73 E-value=43 Score=22.11 Aligned_cols=6 Identities=50% Similarity=0.595 Sum_probs=2.1
Q ss_pred hHHHHH
Q 021792 234 NSKLKQ 239 (307)
Q Consensus 234 N~~LK~ 239 (307)
|..|.+
T Consensus 23 N~~Le~ 28 (34)
T 1a93_B 23 NALLEQ 28 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 251
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.54 E-value=1.7e+02 Score=27.47 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC-
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA--ISP- 273 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~--~~~- 273 (307)
.|+.+|+.+++.|+.+...+..+++ -..+++..+.++..+++|..-- +....|+..|....| .+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~k~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~lA 314 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE--------KRPENKKAHNKRDNLQQQLDAN----EQKIEEGKRLQEEHGNELPIS 314 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------hCcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcceeE
Confidence 4566666666666666666555552 1122344445555554443322 333445666655556 211
Q ss_pred ------CCCCc--cccCCCCCCC--CCccccccccccccc
Q 021792 274 ------RSKVK--TYFGTNSAAE--GSQSGVNWQMLDFAK 303 (307)
Q Consensus 274 ------~~~~~--~~~~~~~~~~--~~~~~~~~q~ld~~k 303 (307)
..... -|.|++-.-. .....|.|+|++.++
T Consensus 315 gal~~~~~~~~~y~y~gs~~~~~~~~~~~ll~w~~i~~A~ 354 (426)
T 1lrz_A 315 AGFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYAL 354 (426)
T ss_dssp EEEEEECSSCEEEEEEEECGGGGGGCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEecCchhhHhhcCCcHHHHHHHHHHHH
Confidence 11111 2234432211 234478898887654
No 252
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=35.32 E-value=1.5e+02 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 238 KQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 238 K~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
+.+++..+.+....++.-+.++++++.++....
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444445556666666665543
No 253
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.30 E-value=62 Score=31.26 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVAL-LLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~-L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
|..+++.|+++...++.+|.. -.++...|..|=++||.+|+.++.+.
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555542 11223455555566666666555443
No 254
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.21 E-value=20 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.|..|-+|++.|+.+.-.+..++..++++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888776543
No 255
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=35.15 E-value=51 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+-+|-..|-.|..|+..|..++.
T Consensus 2 vyqlkdevgelkgevralkdevk 24 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHh
Confidence 33455555555555555555544
No 256
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=34.94 E-value=1.5e+02 Score=22.43 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLS 231 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~ 231 (307)
+|-.+|..|..|...|..++..++++...+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899988888888888877776655
No 257
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.88 E-value=37 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 021792 198 YIAELERTVEYFQTLQADLG 217 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls 217 (307)
.+.-|.++++.||+||+.|.
T Consensus 42 Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 42 ELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhc
Confidence 34446678888888888775
No 258
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.81 E-value=1.3e+02 Score=21.82 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 021792 230 LSMENSKLKQKIARVQK 246 (307)
Q Consensus 230 L~~EN~~LK~rl~~l~q 246 (307)
..+|-.+|+..|+.|+-
T Consensus 54 ~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 259
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.54 E-value=40 Score=32.64 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLL---QQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~---~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
+|..+++.|+++...++.+|..+. ++...|..|=++||.+|+.++.+..-.+ +.|...+-+|
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i 105 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE---EELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 456677788888888888877653 2346777888888888888876654333 3344444444
No 260
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=34.19 E-value=17 Score=28.63 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 021792 191 SRVRKLQYIAELERTVEYFQTLQAD 215 (307)
Q Consensus 191 SR~RKl~Yi~ELE~kVq~Lq~E~a~ 215 (307)
|=+|=++-|.|||.++..||+|...
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566688888888888887754
No 261
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.98 E-value=45 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
..-+.||.-|..|++.++.|...|+-|+.+
T Consensus 17 kenaklenivarlendnanlekdianlekd 46 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHH
Confidence 344556666666666666666555554433
No 262
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.79 E-value=94 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+..|+.++..+..++..|..++..++..
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555433
No 263
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.72 E-value=89 Score=29.55 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 021792 200 AELERTVEYFQTLQADLGARV 220 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls~~l 220 (307)
..||..|...++++..|..+|
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l 35 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHH
Confidence 334444444444444443333
No 264
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.37 E-value=35 Score=24.91 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGA 218 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~ 218 (307)
.|+.+||.+|..|+.....|..
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999988777654
No 265
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.26 E-value=1.2e+02 Score=23.21 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 195 KLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 195 Kl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
+-..+..|+.+++.|+.++..|..++..++.+...|..+=.++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=32.39 E-value=47 Score=24.97 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH---HHHHhHHHHHHH---HHHHhhhhhhhhhHHHHHHHH
Q 021792 197 QYIAELERTVEYF---QTLQADLGARVA---LLLQQHVSLSMENSKLKQKIA 242 (307)
Q Consensus 197 ~Yi~ELE~kVq~L---q~E~a~Ls~~l~---~L~~~~~~L~~EN~~LK~rl~ 242 (307)
..+.+|-.-|=.. ...++.|..-|. .|+++...|..||.+|+.+++
T Consensus 23 ~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 23 DKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444321 123334444433 344555555555555555544
No 267
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.97 E-value=1.6e+02 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEA 262 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei 262 (307)
|......+++++..|+++-..+.+|++.+...|+..+|++.--...+..+--|+
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 334444555666666666667788888888888888877654444455554444
No 268
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.78 E-value=74 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~ 221 (307)
||.|+.||.++-.|-.+|.
T Consensus 11 ERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 269
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.72 E-value=2e+02 Score=23.12 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHH--HhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTL--QADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E--~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
|..|++-|..|-+. ...|..+|..+.+....|..+-++.-.+|..
T Consensus 30 vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444432 2344555554444444444444444444443
No 270
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.70 E-value=1.2e+02 Score=23.97 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
-|++|++.|+.....|...+..+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 271
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=31.14 E-value=18 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 239 QKIARVQKEKLIMEGQYQYLKKEAERLKV 267 (307)
Q Consensus 239 ~rl~~l~qq~~lkda~~E~L~~Ei~RLk~ 267 (307)
.+|.+.+.+.+....+-|+.+.|+|.+|+
T Consensus 9 kklravenelhynkslleevkdelqkmrq 37 (38)
T 1c94_A 9 KKLRAVENELHYNKSLLEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 35778888888888888999999887764
No 272
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=31.05 E-value=64 Score=24.86 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=16.6
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 021792 225 QQHVSLSMENSKLKQKIARVQKEKLIMEG-------QYQYLKKEAERLKVS 268 (307)
Q Consensus 225 ~~~~~L~~EN~~LK~rl~~l~qq~~lkda-------~~E~L~~Ei~RLk~~ 268 (307)
+.+..|...|.++|.++..|.++.--.++ +...|.-+++++|++
T Consensus 5 ~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqa 55 (79)
T 1tu3_F 5 SAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQA 55 (79)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666665544443 455666667777654
No 273
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.01 E-value=1.7e+02 Score=26.07 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 021792 202 LERTVEYFQTLQADLGAR 219 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~ 219 (307)
|+.++..|+.++..|..+
T Consensus 64 l~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHR 81 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 274
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.79 E-value=3.2e+02 Score=25.07 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
-+.-|+-+-.....|+..|-.+|..| ..--..+-.||+.|+|+-.+-+-.-..++.-|.
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L-------~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENL-------RQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666555 444566788999999987776655555554443
No 275
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.25 E-value=80 Score=21.70 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 021792 201 ELERTVEYFQTLQADLGA 218 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~ 218 (307)
.||..+|.|+...+.|..
T Consensus 24 aleselqalekklaalks 41 (48)
T 1g6u_A 24 ALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 276
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=30.24 E-value=1.1e+02 Score=19.59 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
+..|..+||.|.+.+..-..++..|.+.+
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677888888888888777777665543
No 277
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.22 E-value=3e+02 Score=24.65 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 238 KQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 238 K~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
+..++..+.+....++..+.++.++..++.....
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444333344445555566666554443
No 278
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.97 E-value=38 Score=24.74 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhHHH--HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 021792 200 AELERTVEYFQTLQADLG--ARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEG--QYQYLKKEAER 264 (307)
Q Consensus 200 ~ELE~kVq~Lq~E~a~Ls--~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda--~~E~L~~Ei~R 264 (307)
..||.+|+.|+..+..|- .+|..|. ..=.+||.+|+.|----..+.+ .-..|++||..
T Consensus 5 kaleekvkaleekvkalggggrieelk-------kkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELK-------KKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHH-------HHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHH-------HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 457778887777766653 2344332 2334566777666433333322 23345566643
No 279
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.96 E-value=4.1e+02 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 203 ERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
|.+|..++++++.+.++-+.+.+.+
T Consensus 33 e~~~ae~~a~n~~i~aeNeaikkrN 57 (497)
T 3iox_A 33 EAAVAANNAANAALTAENTAIKKRN 57 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 280
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.95 E-value=1.2e+02 Score=23.67 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021792 232 MENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLA 270 (307)
Q Consensus 232 ~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~ 270 (307)
.||..|..+|..+..+ +..|+.|.+.||.++.
T Consensus 46 ~EN~~Lh~~ie~l~eE-------i~~lk~en~eL~elae 77 (83)
T 1uii_A 46 KENEKLHKEIEQKDNE-------IARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4778888777775443 3556666666666554
No 281
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.55 E-value=91 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
.+..||..++.||+.-+-|-++.+..++
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888887775543
No 282
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.42 E-value=1.4e+02 Score=21.09 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHhHHHHHHHHHHHhhhhhh
Q 021792 212 LQADLGARVALLLQQHVSLS 231 (307)
Q Consensus 212 E~a~Ls~~l~~L~~~~~~L~ 231 (307)
|++.|..-++.|+.++..|.
T Consensus 18 enaklenivarlendnanle 37 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLE 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHH
Confidence 55555555555544333333
No 283
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.21 E-value=35 Score=33.24 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+|+.+++.|++|+..|..++..+.++...|..+-++++.+++.
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555544444444444444444433
No 284
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.20 E-value=3.7e+02 Score=25.34 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 021792 201 ELERTVEYF 209 (307)
Q Consensus 201 ELE~kVq~L 209 (307)
+.+.+++.+
T Consensus 385 ~~~~~~~~~ 393 (487)
T 3oja_A 385 ELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhHHHh
Confidence 444444443
No 285
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=28.96 E-value=3.4e+02 Score=24.82 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=61.6
Q ss_pred cchhhHH-H-HHHHHHHHHH-HHHHHHHHHHHHHHHHHH----hHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 021792 178 AETKMTK-R-QFGQRSRVRK-LQYIAELERTVEYFQTLQ----ADLGARVA-LLLQQHVSLSMENSKLKQKIARVQKEKL 249 (307)
Q Consensus 178 ~DpKR~K-R-qSA~RSR~RK-l~Yi~ELE~kVq~Lq~E~----a~Ls~~l~-~L~~~~~~L~~EN~~LK~rl~~l~qq~~ 249 (307)
..-|++| | +--.|.|+-| ++.++|+|.+++.|..-. -.++.+|+ ..+.....|..|+..-|++|...- ++.
T Consensus 16 ~~f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH-~qR 94 (239)
T 3k66_A 16 DDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVH-EER 94 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHH
Confidence 3456666 3 3345566666 788999999999998754 23455544 455666889999999999997764 445
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021792 250 IMEGQYQYLKKEAERLKVSL 269 (307)
Q Consensus 250 lkda~~E~L~~Ei~RLk~~~ 269 (307)
+.-.+|+.-+.=+.-...++
T Consensus 95 V~a~LNerrr~Ale~y~~AL 114 (239)
T 3k66_A 95 VQAMLNEKKRDATHDYRQAL 114 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555555554
No 286
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=28.76 E-value=54 Score=30.96 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERT--VEYFQTLQADLGARVALLLQQHVSLSME-NSKLKQKIARVQKEK 248 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~k--Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~E-N~~LK~rl~~l~qq~ 248 (307)
.||| |+..=++.+..+..|+-- +..|..+......+|..+ ..+ |.++..=+.+||+|.
T Consensus 212 p~P~------AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el-------~~~~~~E~~~~V~~LE~~y 272 (325)
T 3e35_A 212 AYPD------AALTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQ-------IQEGDEELIALVQGLEHQY 272 (325)
T ss_dssp CCHH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHSCHHHHHHHHHHHHHH
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHH-------HhccCHHHHHHHHHHHHHH
Confidence 4687 455566677777778877 888888887777777644 778 888888888888874
No 287
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=28.70 E-value=81 Score=23.90 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021792 245 QKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 245 ~qq~~lkda~~E~L~~Ei~RLk 266 (307)
+...-.---++..||.||.||-
T Consensus 42 EatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 42 EATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3333333446778889998884
No 288
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.63 E-value=35 Score=30.91 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQ 225 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~ 225 (307)
..++..+++..+++.|+.|+..+..+|..|.+
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555544444433
No 289
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.61 E-value=6.2e+02 Score=31.20 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLS 231 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~ 231 (307)
+.-+.|=+.+|..|+.|.+.+..+|..-+++...+.
T Consensus 1926 L~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667888888888888888887766665443
No 290
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=28.20 E-value=82 Score=30.05 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 188 GQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 188 A~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
|+..=++.+..+..|+--+..|..+......+|..+ ..+|.++..=++.|+++.
T Consensus 253 AA~alL~~L~~llgl~ip~~~L~e~Ae~ie~~i~el-------~~~~~e~~~~V~~LE~qy 306 (351)
T 2wam_A 253 AAQALLEQVAKTGSLQLPLAVLAEAAAEVQAKIDEQ-------VQASAEVAQVVAALERQY 306 (351)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-------HHhCHHHHHHHHHHHhhh
Confidence 556666777777777778888888888777777755 667777777677777654
No 291
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=27.52 E-value=1.3e+02 Score=19.63 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 235 SKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 235 ~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
++||+++.+|..|-.|--.--.+|++.|..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666555555444444555554444
No 292
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.48 E-value=2.2e+02 Score=22.15 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
+...|..|+.+...+..+++...+++..|..=.-.|-..|
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444444444333343333
No 293
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.46 E-value=2e+02 Score=21.73 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 021792 257 YLKKEAERLKVS 268 (307)
Q Consensus 257 ~L~~Ei~RLk~~ 268 (307)
+|..||.--|.+
T Consensus 67 ~Le~EIatYRkL 78 (86)
T 1x8y_A 67 ALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 445555444443
No 294
>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C*
Probab=27.40 E-value=3.1e+02 Score=25.69 Aligned_cols=56 Identities=25% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHH----------hhhhhhhhhHHHHHHHHHHHHHH
Q 021792 192 RVRKLQYIA-------------ELERTVEYFQTLQADLGARVALLLQ----------QHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 192 R~RKl~Yi~-------------ELE~kVq~Lq~E~a~Ls~~l~~L~~----------~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
-+=|++||. +|||-.+.|++-.+.|. +.-+| .-..|..-..+|..+|..|.+++
T Consensus 110 aEP~Lk~i~~~l~~~~~~~di~tl~r~~q~lET~lsvl~---~ss~q~~~~s~evy~~L~~lae~k~~l~~~l~~Lk~~Q 186 (303)
T 2h7o_A 110 VEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLV---TLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQ 186 (303)
T ss_dssp HHHHHHHHHGGGGSCCCGGGHHHHHHHHHHHHHHHHHHH---HHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhh---ccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 99999999999877763 22222 11234444566667776665544
Q ss_pred HH
Q 021792 249 LI 250 (307)
Q Consensus 249 ~l 250 (307)
.-
T Consensus 187 ~~ 188 (303)
T 2h7o_A 187 ES 188 (303)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 295
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.01 E-value=3.4e+02 Score=24.28 Aligned_cols=24 Identities=0% Similarity=0.039 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 243 RVQKEKLIMEGQYQYLKKEAERLK 266 (307)
Q Consensus 243 ~l~qq~~lkda~~E~L~~Ei~RLk 266 (307)
..+.+.....+..+.++.++..++
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333
No 296
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.75 E-value=1.4e+02 Score=24.22 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKL 237 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~L 237 (307)
.+.+.+|+.++..|+.....|...|..+++.......+...+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 297
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=26.45 E-value=2.7e+02 Score=23.41 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 198 YIAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 198 Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
-+.++|..|+.+......+..+|+.+++-+
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~iekGF 51 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQQGF 51 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455677777777777777777777776665
No 298
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.12 E-value=2.5e+02 Score=22.48 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERL 265 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RL 265 (307)
|.-..+..++..++.|.............|...+..|..|-+.|..+|++-...+.-.+-..+.|.+.-..|
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eL 81 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQL 81 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 299
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=25.87 E-value=4e+02 Score=25.07 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 186 QFGQRSRVRKL-QYIAELERTVEYFQTLQADLGARVALLLQQHVS-LSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAE 263 (307)
Q Consensus 186 qSA~RSR~RKl-~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~-L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~ 263 (307)
...-|+|+-++ .-|.++.+.|..-+.++..|...+..-++.... -.+..-.-++=|+.+.|+.+.-......|.++++
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~ 383 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQE 383 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44455555543 456667777777777777776666544331110 0112222345566666777777777777888888
Q ss_pred HHHHHhcC
Q 021792 264 RLKVSLAI 271 (307)
Q Consensus 264 RLk~~~~~ 271 (307)
=|+....+
T Consensus 384 ~~~~~~~~ 391 (406)
T 4dyl_A 384 LLQTKLEH 391 (406)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88888776
No 300
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=25.83 E-value=1.8e+02 Score=22.97 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=10.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH
Q 021792 226 QHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 226 ~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
+...|+.|=.+|+-.++.+..++
T Consensus 65 qkeRL~~dF~~l~~~fQ~~qr~y 87 (97)
T 1hs7_A 65 QNGKLSADFKNLKTKYQSLQQSY 87 (97)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444433
No 301
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.76 E-value=2.1e+02 Score=21.50 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 021792 202 LERTVEYFQTLQADLGARVALLLQQHVSLS 231 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~ 231 (307)
|-.+|..|.+|...|..++..++++...+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877776665
No 302
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=25.66 E-value=2.4e+02 Score=22.00 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKE 247 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq 247 (307)
+|.|...-.+.-.+..-|......|.+||..|-.--..|-.|
T Consensus 28 lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrq 69 (97)
T 1no4_A 28 LQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQ 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHH
Confidence 455666666667777777788888888888775443333333
No 303
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.47 E-value=99 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+..||.+|..+...++.+..+|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~ 24 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLA 24 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665555544444333
No 304
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.37 E-value=46 Score=24.71 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 021792 197 QYIAELERTVEYFQTLQADL 216 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~L 216 (307)
.|+..||.+|..|+.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48999999999887655443
No 305
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=25.04 E-value=2e+02 Score=24.99 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 021792 191 SRVRKLQYIAELERT 205 (307)
Q Consensus 191 SR~RKl~Yi~ELE~k 205 (307)
.|-|.+|||.-|=|.
T Consensus 67 arRRQlqyIGKLmR~ 81 (176)
T 2p0t_A 67 ARKRHILFIGKLMRD 81 (176)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhc
Confidence 567999999887665
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.01 E-value=2.4e+02 Score=29.11 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 185 RQFGQRSRVR---KLQYIAELERTVEYFQTLQAD---------------LGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 185 RqSA~RSR~R---Kl~Yi~ELE~kVq~Lq~E~a~---------------Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
.+.+++.+.+ +-..+.+||+++..|+.|... |..++..+.++...|...+..-+.+++.
T Consensus 386 dea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (854)
T 1qvr_A 386 DEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRK 462 (854)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544 456678888888877776543 3444455555544444444444443433
No 307
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=24.97 E-value=4e+02 Score=24.39 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 021792 185 RQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVA-----LLLQQHVSLSMENSKLKQKIARVQKEK 248 (307)
Q Consensus 185 RqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~-----~L~~~~~~L~~EN~~LK~rl~~l~qq~ 248 (307)
++..+-+.++.-+|-+|.+.+-+.+...+.-|..=+. .+.+-......|+++||.+++....+.
T Consensus 82 ~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~ 150 (251)
T 1jad_A 82 RLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDR 150 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999998888776664333 333334455678999988887666553
No 308
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.91 E-value=88 Score=31.48 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
..|||.++..++.|.......|...++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDM 364 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5789999999998887766666544433
No 309
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.91 E-value=4.3e+02 Score=24.72 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+.....|.+..++.||.+.+.+...+..++.+
T Consensus 387 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 387 DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444455555555555555555544444433
No 310
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=24.80 E-value=2.6e+02 Score=25.09 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 021792 253 GQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~~~~~ 271 (307)
...+....+|+||+.++.-
T Consensus 162 ~ak~~~~~~i~rl~~AL~I 180 (265)
T 3b8o_A 162 VAKAIYDRRMNSIEQALKI 180 (265)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677888888876554
No 311
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.65 E-value=1.4e+02 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHH
Q 021792 205 TVEYFQTLQADLGARVA 221 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~ 221 (307)
+|+.|++.++++..++.
T Consensus 9 sVk~~eT~iaa~~~ev~ 25 (74)
T 1avy_A 9 KIKAIETDIASVRQEVN 25 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeec
Confidence 45555555555555553
No 312
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=24.64 E-value=3.6e+02 Score=24.42 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021792 254 QYQYLKKEAERLKVSLA 270 (307)
Q Consensus 254 ~~E~L~~Ei~RLk~~~~ 270 (307)
.......+|+||+.++.
T Consensus 178 ak~~~~~~I~rL~~AL~ 194 (280)
T 3b8m_A 178 MKNQLDANIQRLNYSLD 194 (280)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456667777776543
No 313
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.39 E-value=3.5e+02 Score=23.43 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------h-hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQ----------Q-HVSLSMENSKLKQKIARVQKEKLIMEGQY 255 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~----------~-~~~L~~EN~~LK~rl~~l~qq~~lkda~~ 255 (307)
..-+..||+..+.|+.++..|..++..+++ . ...+.......++=++....+.-|.|+++
T Consensus 62 ~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy 132 (174)
T 2p22_A 62 RAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIE 132 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888886665543 1 12244455667888999999999999853
No 314
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.38 E-value=1.8e+02 Score=20.37 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021792 186 QFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVAL 222 (307)
Q Consensus 186 qSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~ 222 (307)
+.|-||=.+-..-|.+||.++..-+.+...++.+|..
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6788887777778888888777777777777766653
No 315
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.01 E-value=2.3e+02 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 021792 257 YLKKEAERLKVSL 269 (307)
Q Consensus 257 ~L~~Ei~RLk~~~ 269 (307)
+|..||.--|.+.
T Consensus 44 ~Le~EIatYRkLL 56 (74)
T 2xv5_A 44 ALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665554
No 316
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.99 E-value=1e+02 Score=27.03 Aligned_cols=43 Identities=19% Similarity=-0.011 Sum_probs=24.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 178 AETKMTKRQFGQRSRVRKLQYIAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 178 ~DpKR~KRqSA~RSR~RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
.||..+-|+--. .-+.-+.+|..+|+.||.||-.|+.+-+...
T Consensus 137 ~~p~e~i~elid----~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 137 ENPAEVIRELIC----YCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp SCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655554332 3455566666666666666666666555443
No 317
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.70 E-value=2.2e+02 Score=21.12 Aligned_cols=29 Identities=3% Similarity=0.101 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQH 227 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~ 227 (307)
+..+.+|++.|+.|...+..++..|++++
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ER 32 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK 32 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777766666665533
No 318
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.57 E-value=3.1e+02 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 206 VEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 206 Vq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
|+.|+.|+.+|..+|..+..+-..|+.+|..|..||
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 333333333333333333333333444444444443
No 319
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.43 E-value=2.2e+02 Score=21.40 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 021792 205 TVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 205 kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+..|..++..|-.+|+.|+.+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443
No 320
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.32 E-value=5.2e+02 Score=25.92 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC
Q 021792 231 SMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPRSKVKTYFGTNS 285 (307)
Q Consensus 231 ~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~~~~~~~~~~~~ 285 (307)
...-.-||++|..--+...+-....+.+..||+||=+.... ..+.-.++|.
T Consensus 117 e~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~----q~~~Cr~pC~ 167 (491)
T 1m1j_A 117 RRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI----KIRACKGSCA 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTTTTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcchhh
Confidence 33334455555555555555566778889999999887765 3444446665
No 321
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.94 E-value=70 Score=21.54 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 021792 199 IAELERTVEYFQTLQADLG 217 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls 217 (307)
|+.||.+++.|+.|--.|+
T Consensus 17 i~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 17 ILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444
No 322
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.89 E-value=2e+02 Score=22.35 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021792 194 RKLQYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVS 268 (307)
Q Consensus 194 RKl~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~ 268 (307)
-|.+.|.+.|+.++..+.-+..|.-++..+. ...-..++.||..-.++. +.|++|+.+|+.-
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p------~~~R~~~~~klr~Yk~dL-------~~lk~elk~~~~~ 96 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIP------PQSRGMYSNRMRSYKQEM-------GKLETDFKRSRIA 96 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------TTTHHHHHHHHHHHHHHH-------HHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------HHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 3445566666666555444444333333221 223345555665555443 4577887777654
No 323
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.80 E-value=3.1e+02 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 021792 240 KIARVQKEKLIM-------EGQYQYLKKEAERLK 266 (307)
Q Consensus 240 rl~~l~qq~~lk-------da~~E~L~~Ei~RLk 266 (307)
+|+-|++|+.+- .+=-|.+..|+++|.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~ 96 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHH
Confidence 444555554442 233344555555544
No 324
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.73 E-value=2e+02 Score=20.02 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
-..||+.-|.|+.-++.|..+|+.|+.+
T Consensus 19 nlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888888888877543
No 325
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=22.63 E-value=1.5e+02 Score=29.95 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021792 209 FQTLQADLGARVALLLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAISPR 274 (307)
Q Consensus 209 Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~~~~ 274 (307)
|..-+.+|..-..++.+-+..|..=|..+.+-|.. +-.++.||-|||.+.|+.|+
T Consensus 432 L~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 486 (497)
T 2b9b_A 432 LAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSK-----------IYHIENEIARIKKLIGEAPG 486 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhh-----------hhhhhHHHHHHHHHhccCCC
Confidence 44455566666677777766666555555443332 33578999999999999764
No 326
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.62 E-value=3.8e+02 Score=23.20 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021792 223 LLQQHVSLSMENSKLKQKIARVQKEKLIMEGQYQYLKKEAERLKVSLAI 271 (307)
Q Consensus 223 L~~~~~~L~~EN~~LK~rl~~l~qq~~lkda~~E~L~~Ei~RLk~~~~~ 271 (307)
|.+....|..+-..|+.-++.|+++...-+...+.|++.+..+......
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555667777777888888888888888888888888877777666554
No 327
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.30 E-value=91 Score=20.75 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 021792 233 ENSKLKQ 239 (307)
Q Consensus 233 EN~~LK~ 239 (307)
+|+.|..
T Consensus 28 ~N~~Le~ 34 (39)
T 1gk7_A 28 QNKILLA 34 (39)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 328
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.26 E-value=1.4e+02 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
.||.=|=.+|+.| ++++..|++++..|..|=+....|+
T Consensus 145 elid~~ld~~~~L-------~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAEN-------QAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555444444444 4444445555555555544444444
No 329
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.19 E-value=5e+02 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 021792 253 GQYQYLKKEAERLKV 267 (307)
Q Consensus 253 a~~E~L~~Ei~RLk~ 267 (307)
+..+.|..+|+||.+
T Consensus 90 ~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 347888999999765
No 330
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=22.05 E-value=1.3e+02 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLL 224 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~ 224 (307)
+..||..|+.||+.-+-|-++.+..+
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888777777776544
No 331
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=22.00 E-value=66 Score=25.07 Aligned_cols=23 Identities=9% Similarity=-0.046 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+++|+.+++.|+.+++.|...|.
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988888884
No 332
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.93 E-value=1.3e+02 Score=23.48 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 197 QYIAELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 197 ~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
.+..||+.-++.|+.....|..-|...+..
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456889999999999888888888876544
No 333
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.46 E-value=2.6e+02 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKI 241 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl 241 (307)
++...|..|+.+...+..+++...++...|..=.-.|-..|
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544444444444333343333
No 334
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.44 E-value=2.2e+02 Score=20.02 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 021792 201 ELERTVEYFQTLQADLGARVA 221 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~ 221 (307)
+|.+++..|...|..|...+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~ 33 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK 33 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 335
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.30 E-value=1.3e+02 Score=23.80 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 021792 203 ERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 203 E~kVq~Lq~E~a~Ls~~l~~L 223 (307)
..+++.|+.|...|..+-..|
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~L 25 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQL 25 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444433
No 336
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.13 E-value=2.7e+02 Score=20.98 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021792 199 IAELERTVEYFQTLQADLGARVALLLQQHVSLSMENSKLKQKIAR 243 (307)
Q Consensus 199 i~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~~L~~EN~~LK~rl~~ 243 (307)
+.++...|..|+.+.+.+..+++...+++..|..=.-.|-..|++
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334445555556666666666665555555555444444444433
No 337
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=21.07 E-value=3e+02 Score=22.53 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021792 196 LQYIAELERTVEYFQTLQADLGARVALLLQQHV 228 (307)
Q Consensus 196 l~Yi~ELE~kVq~Lq~E~a~Ls~~l~~L~~~~~ 228 (307)
+.-+.++|..|+....+...+..+|+-+++-+.
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iekGFL 42 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQGFL 42 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445778999999999999999999998887763
No 338
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.98 E-value=1.8e+02 Score=26.15 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHH
Q 021792 233 ENSKLKQKIARVQ 245 (307)
Q Consensus 233 EN~~LK~rl~~l~ 245 (307)
||..|..+|+.+.
T Consensus 116 EN~~Lh~~ie~l~ 128 (209)
T 2wvr_A 116 ENEKLHKEIEQKD 128 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 339
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.90 E-value=70 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021792 201 ELERTVEYFQTLQADLGARVALLLQQ 226 (307)
Q Consensus 201 ELE~kVq~Lq~E~a~Ls~~l~~L~~~ 226 (307)
+|..+|+.|+.|+..|..++..|..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 340
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.04 E-value=1.5e+02 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 021792 202 LERTVEYFQTLQADLGARVALL 223 (307)
Q Consensus 202 LE~kVq~Lq~E~a~Ls~~l~~L 223 (307)
|++|++.|+.....|...+..+
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l 124 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAEL 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
Done!