Query 021793
Match_columns 307
No_of_seqs 111 out of 398
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592 Tumor differentially e 100.0 3.5E-87 7.5E-92 639.8 22.9 292 3-300 3-317 (426)
2 PF03348 Serinc: Serine incorp 100.0 1.7E-85 3.7E-90 648.6 27.8 280 19-301 11-305 (429)
3 PF08426 ICE2: ICE2; InterPro 96.7 0.31 6.7E-06 48.8 20.1 199 34-258 2-225 (412)
4 COG2142 SdhD Succinate dehydro 56.6 1E+02 0.0022 25.9 8.6 93 102-197 5-107 (117)
5 PF06123 CreD: Inner membrane 52.3 1.2E+02 0.0027 30.8 10.1 62 35-123 298-359 (430)
6 MTH00136 ND3 NADH dehydrogenas 48.9 63 0.0014 26.7 6.2 14 157-170 97-110 (116)
7 MTH00106 ND3 NADH dehydrogenas 41.0 1.1E+02 0.0023 25.2 6.4 14 157-170 96-109 (115)
8 PRK11715 inner membrane protei 40.0 2E+02 0.0044 29.3 9.5 61 35-122 304-364 (436)
9 PRK06602 NADH:ubiquinone oxido 39.6 86 0.0019 26.0 5.7 14 157-170 103-116 (121)
10 PF07062 Clc-like: Clc-like; 38.4 3.2E+02 0.007 25.1 10.3 93 108-200 93-201 (211)
11 PRK07756 NADH dehydrogenase su 35.5 1.2E+02 0.0027 25.1 6.1 14 157-170 104-117 (122)
12 MTH00203 ND3 NADH dehydrogenas 34.3 1.2E+02 0.0027 24.7 5.8 14 157-170 95-108 (112)
13 MTH00042 ND3 NADH dehydrogenas 32.3 1.6E+02 0.0034 24.3 6.1 14 157-170 97-110 (116)
14 PF14007 YtpI: YtpI-like prote 31.4 72 0.0016 25.5 3.8 50 111-161 26-75 (89)
15 PF11241 DUF3043: Protein of u 30.0 1.3E+02 0.0028 26.9 5.5 62 106-174 72-133 (170)
16 MTH00012 ND3 NADH dehydrogenas 28.0 1.8E+02 0.0038 24.0 5.7 14 157-170 98-111 (117)
17 PRK06432 NADH dehydrogenase su 27.4 2.2E+02 0.0049 24.8 6.4 16 155-170 123-138 (144)
18 PF02936 COX4: Cytochrome c ox 26.4 88 0.0019 26.9 3.7 64 76-174 51-114 (142)
19 MTH00092 ND3 NADH dehydrogenas 25.6 2.3E+02 0.0049 23.2 5.9 12 159-170 94-105 (111)
20 MTH00018 ND3 NADH dehydrogenas 24.7 1.8E+02 0.004 23.7 5.2 14 157-170 95-108 (113)
21 MTH00055 ND3 NADH dehydrogenas 24.6 1.9E+02 0.0041 23.9 5.3 14 157-170 100-113 (118)
22 PF02444 HEV_ORF1: Hepatitis E 23.5 43 0.00092 27.4 1.2 29 3-38 6-34 (114)
23 CHL00022 ndhC NADH dehydrogena 23.4 2.9E+02 0.0062 22.9 6.2 14 157-170 102-115 (120)
24 PRK07928 NADH dehydrogenase su 22.6 3E+02 0.0065 22.8 6.1 14 157-170 101-114 (119)
25 PF04688 Phage_holin: Phage ly 21.3 1.1E+02 0.0023 21.5 2.7 24 281-304 12-35 (47)
26 MTH00030 ND3 NADH dehydrogenas 20.4 3.4E+02 0.0073 22.8 6.0 14 157-170 105-118 (123)
No 1
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=100.00 E-value=3.5e-87 Score=639.75 Aligned_cols=292 Identities=25% Similarity=0.538 Sum_probs=263.9
Q ss_pred CCCccchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHcccch-hHHhhcCcccccCCC--CCcccchhh
Q 021793 3 SGTGAGIQRRAIFKEDSWFSQFRNGSNPWMARYVYALIFLVANLLAWVVRDYS-SAALTEMEKLKNCQG--GHHCLGAQG 79 (307)
Q Consensus 3 ~~~~~~~~~~c~~~~~~~c~~c~~~~~s~~tR~~Ya~~fll~~i~s~i~~~~~-~~~l~~~~~~~~C~~--~~~C~G~~a 79 (307)
++++.+| ||+...+=+|++||+.+||++||++|+++++++++++|+|+ ++ +++++|.|+. |++ .++|.|+.|
T Consensus 3 ~~s~~~c--c~g~~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~-~~~~~~l~k~p~~--c~~~~c~~~~gy~A 77 (426)
T KOG2592|consen 3 AASSVAC--CCGGAACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIML-PGAEKQLNKLPWF--CEGNDCGKLLGYKA 77 (426)
T ss_pred hHHHHHH--hhcchHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhCCcc--ccCCCcccchhhhH
Confidence 4556666 66632212368899999999999999999999999999999 56 5699999997 433 356789999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccchhHHHHHHHHHHHhheecCch-hHHHHHHHHHHHHHHHHHHHHH
Q 021793 80 VLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPSS-FIQLYGEIAHFGAGVFLLIQLI 158 (307)
Q Consensus 80 VyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~~-f~~~y~~va~~gs~lFiliQlI 158 (307)
|||+|||+++||++++++|+|||++||+|++||||||++|+++|+++.+++|||||+ +...|.+++++||++|||+|+|
T Consensus 78 VyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvqLv 157 (426)
T KOG2592|consen 78 VYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQLV 157 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 7778999999999999999999
Q ss_pred HHHHHHHHHhHHhhcc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 021793 159 SVISFITWLNDCCLSE-KNAERCHIHVMLIATVAYIICIVGIIMMYIWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPK 237 (307)
Q Consensus 159 lLvDFa~~wne~w~~~-~~~~~w~~~Li~~T~~~y~~si~~~v~my~~f~~~~~C~lN~~fIt~nlil~ii~s~lSl~p~ 237 (307)
+||||||+|||+|+++ ||++.||++|++.|+++|.++++++++||+||++++||++||+||++|+++|++++++|+||+
T Consensus 158 LLvDFaH~w~e~wv~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~l~fv~ft~~~~C~~nk~fi~~nlilcv~~si~sv~P~ 237 (426)
T KOG2592|consen 158 LLVDFAHSWNESWVEKVEDSRFWYAALLGVTLLMYLLSLVATVLLFVYFTPGDGCGENKFFISVNLILCVAISILSVHPK 237 (426)
T ss_pred HHHHHHhhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhheEecCCCCCCcceEEEeechHHHHHHHHHhcChh
Confidence 9999999999999999 888899999999999999999999999999999999999999999999999999999999997
Q ss_pred c-----cccccchhHHHHHHHHHHHHHhhcCCCCCCCCcccccCC-------------CCchHHHHHHHHHHHHHHHHhh
Q 021793 238 I-----NSGFLAPGLMGLYIIFLCWCAIRSEPAGETCNRKAEASN-------------KTDWLTIIVILIIFQKSLTKLY 299 (307)
Q Consensus 238 v-----~~gLLqssiVs~Y~~yLt~SAlsseP~d~~CNp~~~~~~-------------~~~~~siig~i~~~~~~~~~~~ 299 (307)
+ |||||||++|++|+|||||||++||| |++|||...+.. .-|.++++|+++++++++|.--
T Consensus 238 VQe~~P~SGLlQSsvIs~Y~~YLt~SAlss~P-e~~CNP~~~~~~~~t~~~~~~~~~~~~~~~~iiGli~~~lcilYsal 316 (426)
T KOG2592|consen 238 VQEGQPRSGLLQSSVISLYTMYLTWSALSSEP-ENGCNPWLNSSKNVTITVGPGASVSTFDATNIIGLIFLLLCILYSAL 316 (426)
T ss_pred hhcCCCCcccchhHHHHHHHHHHHHHHHhcCC-ccccChhhhcccccccccCcccccccccccchHHHHHHHHHHHHHHh
Confidence 7 69999999999999999999999999 999999854431 1234779999999999997644
Q ss_pred C
Q 021793 300 K 300 (307)
Q Consensus 300 ~ 300 (307)
|
T Consensus 317 R 317 (426)
T KOG2592|consen 317 R 317 (426)
T ss_pred h
Confidence 3
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=1.7e-85 Score=648.56 Aligned_cols=280 Identities=32% Similarity=0.631 Sum_probs=260.7
Q ss_pred cccccccCC-CCchHHHHHHHHHHHHHHHHHHHcccchh-HHhh-cCccc--ccCCCCCcccchhhhHHHHHHHHHHHHH
Q 021793 19 SWFSQFRNG-SNPWMARYVYALIFLVANLLAWVVRDYSS-AALT-EMEKL--KNCQGGHHCLGAQGVLRVSLGCFVFYII 93 (307)
Q Consensus 19 ~~c~~c~~~-~~s~~tR~~Ya~~fll~~i~s~i~~~~~~-~~l~-~~~~~--~~C~~~~~C~G~~aVyRvsfal~~Ff~l 93 (307)
++|++||+. ++|+.||++|+++|+++++++|+|++++. +.++ ++|++ .+|+ +++|.|++||||+|||+++||++
T Consensus 11 ~~c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~~C~-~~~c~G~~aVyRvsfal~~Ff~l 89 (429)
T PF03348_consen 11 LCCSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGFDCP-SDSCVGYSAVYRVSFALALFFFL 89 (429)
T ss_pred HHHhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCCcc-hHHhhhhHHHHHHHHHHHHHHHH
Confidence 347888887 99999999999999999999999998553 3444 48877 4786 67899999999999999999999
Q ss_pred HHHHHhccCCCCCcchhhcccchhHHHHHHHHHHHhheecCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021793 94 MFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPS-SFIQLYGEIAHFGAGVFLLIQLISVISFITWLNDCCL 172 (307)
Q Consensus 94 ~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~-~f~~~y~~va~~gs~lFiliQlIlLvDFa~~wne~w~ 172 (307)
|+++|+|||+++|+|+++|||||++|+++|+++++++||||| .|++.|++++++||++||++|+|+||||||+|||+|+
T Consensus 90 ~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w~ 169 (429)
T PF03348_consen 90 MALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESWV 169 (429)
T ss_pred HHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred cccc---cchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHHHhhccccc-----cccccc
Q 021793 173 SEKN---AERCHIHVMLIATVAYIICIVGIIMMYIWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLA 244 (307)
Q Consensus 173 ~~~~---~~~w~~~Li~~T~~~y~~si~~~v~my~~f~~~~~C~lN~~fIt~nlil~ii~s~lSl~p~v-----~~gLLq 244 (307)
+|.| +++|+.+|+++|+++|+++++++++||++|+ ++||.+|++||++|++||++++++|++||| |+||||
T Consensus 170 ~~~e~~~s~~w~~~Li~~T~~~y~~si~~~v~~y~~f~-~~~C~lN~~fIt~nliL~vi~s~lSv~p~Vqe~~p~sgLLq 248 (429)
T PF03348_consen 170 EKAEEGNSKRWYIALIGVTLLFYAASIAGIVLMYVFFT-PSGCSLNKFFITFNLILCVIISVLSVLPKVQEANPRSGLLQ 248 (429)
T ss_pred hccccccCceehhHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccc
Confidence 9933 3689999999999999999999999999999 789999999999999999999999999977 899999
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCcc-cccCCCCchHHHHHHHHHHHHHHHHhhCC
Q 021793 245 PGLMGLYIIFLCWCAIRSEPAGETCNRK-AEASNKTDWLTIIVILIIFQKSLTKLYKP 301 (307)
Q Consensus 245 ssiVs~Y~~yLt~SAlsseP~d~~CNp~-~~~~~~~~~~siig~i~~~~~~~~~~~~~ 301 (307)
||+|++|+|||||||++||| |++|||. .++++..++++++|+++++++++|.++|.
T Consensus 249 ssvv~~Y~~yL~~SAlss~P-~~~CNp~~~~~~~~~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 249 SSVVSLYTTYLTWSALSSEP-DKECNPSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcccCCcccccCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999 9999998 55666778888899999999999999874
No 3
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=96.70 E-value=0.31 Score=48.81 Aligned_cols=199 Identities=17% Similarity=0.238 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHcccchhHHhhcCcccccCCCCCcccchhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcc
Q 021793 34 RYVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHS 113 (307)
Q Consensus 34 R~~Ya~~fll~~i~s~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihn 113 (307)
|...+.+|++..+++.-+- ++ -+|.+| -.-.|+.++.||++.+.+-+-.++++ +..+-.
T Consensus 2 r~~~s~~~L~~ivlsIPla------Fd--------VGG~~c-----GLafSltL~~~Yf~~stl~l~t~~~~--~~~~~s 60 (412)
T PF08426_consen 2 RALLSAFYLLLIVLSIPLA------FD--------VGGRDC-----GLAFSLTLFLFYFILSTLRLATRRTS--YFRLSS 60 (412)
T ss_pred hHHHHHHHHHHHHHHhhhh------hh--------ccCcch-----hHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHH
Confidence 6677777777655542221 11 145677 34568888999999988777765544 222111
Q ss_pred cchhHHHHHHHHH--HHhheecCc------------------hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHH
Q 021793 114 GWWSAKIVLWIAL--TIIPFLLPS------------------SFIQLYGEIAHFGAGVFLLIQL---ISVISFITWLNDC 170 (307)
Q Consensus 114 G~W~~K~l~~~~l--~v~~FfIP~------------------~f~~~y~~va~~gs~lFiliQl---IlLvDFa~~wne~ 170 (307)
=.--..-++...+ .....|-.| ...+.|..+-+.-+-+|-+.+- +++|.=+-+-++
T Consensus 61 ~l~~~Q~~iipsLL~~~L~~fs~~~~~~~~~~~~~~~~~~~~~~v~~W~~~L~~StP~F~llEGf~sLLvIQa~Gq~~r- 139 (412)
T PF08426_consen 61 ILYYSQHLIIPSLLIWFLSRFSVDALNTLNSSSWALWYFYYNGLVEPWDFLLRYSTPVFTLLEGFCSLLVIQAAGQTSR- 139 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccccccccchhhhhhhhchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHH-
Confidence 1111222222222 222233222 2445777777888889999885 466666667766
Q ss_pred hhccc-ccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCCchhHHHHHHHHHHHHHHHHhhccccccccccchhHH
Q 021793 171 CLSEK-NAERCHIHVMLIATVAYIICIVGIIMMYIWYTPD-PTCLLNIFFITWTLVLLQLMTSVSLHPKINSGFLAPGLM 248 (307)
Q Consensus 171 w~~~~-~~~~w~~~Li~~T~~~y~~si~~~v~my~~f~~~-~~C~lN~~fIt~nlil~ii~s~lSl~p~v~~gLLqssiV 248 (307)
|+.++ .++.|...++..+...+..++- ++|--|.-| +-=..+...|++.+-..+.+++.-+. .-|++...||.+
T Consensus 140 WLv~~~rSd~W~I~~Li~Sg~vit~s~Y---fLyRIy~fp~~is~~~AtLiG~~lT~~~~L~~~GI~-sgrGn~iESSLl 215 (412)
T PF08426_consen 140 WLVNRGRSDSWMIVSLIASGSVITASLY---FLYRIYVFPWTISNLDATLIGVTLTSVVFLGLYGIV-SGRGNVIESSLL 215 (412)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHH---HHHHhhccccccCcccHHHHHHHHHHHHHHHHheee-cCCCcHHHHHHH
Confidence 77764 5778988888887777666653 345445444 44468999999999999999999987 448999999999
Q ss_pred HHHHHHHHHH
Q 021793 249 GLYIIFLCWC 258 (307)
Q Consensus 249 s~Y~~yLt~S 258 (307)
.+|++|=.|-
T Consensus 216 FAYiV~cIY~ 225 (412)
T PF08426_consen 216 FAYIVRCIYQ 225 (412)
T ss_pred HHHHHHHHHH
Confidence 9998876663
No 4
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=56.60 E-value=1e+02 Score=25.88 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCCCCcchhhcccchhHHHHHHHH----HHH--hheecCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhcc
Q 021793 102 SKLHGTRDLWHSGWWSAKIVLWIA----LTI--IPFLLPSSFIQLYGEIAHFGAG-VFLLIQLISVISFITWLNDCCLSE 174 (307)
Q Consensus 102 ~ss~d~Ra~ihnG~W~~K~l~~~~----l~v--~~FfIP~~f~~~y~~va~~gs~-lFiliQlIlLvDFa~~wne~w~~~ 174 (307)
|.+.+.|...|| ||....-.++. +.. ..+..||..+..+. +++..- -..+..+.++.-..|.||--|.-=
T Consensus 5 ~~s~~ar~G~~~-~l~qRvTav~Lv~l~~~~l~~~l~~~~~~y~~~~--~~~s~p~~~v~~lL~l~~~l~H~~~Glr~Ii 81 (117)
T COG2142 5 RGSGSARYGSHD-WLLQRVTAVILVLLVIWHLYFLLTWLNATYAAWV--AFLANPFWKVFLLLLLVAALIHAWNGLRVII 81 (117)
T ss_pred ccccccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456667777777 55554433221 111 22233555555554 333332 345667788888999999666542
Q ss_pred cc---cchhHHHHHHHHHHHHHHHHH
Q 021793 175 KN---AERCHIHVMLIATVAYIICIV 197 (307)
Q Consensus 175 ~~---~~~w~~~Li~~T~~~y~~si~ 197 (307)
|| +.+++..+...+.+.+.+.++
T Consensus 82 ~DYi~~~~~r~~l~~~~~~~~v~~~~ 107 (117)
T COG2142 82 EDYIKPEKLRLALQILLVLALVLTGV 107 (117)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22 344555566655555544443
No 5
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=52.33 E-value=1.2e+02 Score=30.79 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHhhcCcccccCCCCCcccchhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccc
Q 021793 35 YVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSG 114 (307)
Q Consensus 35 ~~Ya~~fll~~i~s~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG 114 (307)
.-|+++|+.-+.++.++-+ .+++.+- +=..|. =|.+|+++||+++.-+- =|=|
T Consensus 298 ~KYgiLFI~LTF~~fflfE----~~~~~~i--------HpiQY~---LVGlAl~lFYlLLLSlS------------Ehi~ 350 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFE----LLSKLRI--------HPIQYL---LVGLALVLFYLLLLSLS------------EHIG 350 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcCcc--------cHHHHH---HHHHHHHHHHHHHHHHH------------hhhc
Confidence 5699999988888888864 3443321 111111 37899999998664322 2667
Q ss_pred chhHHHHHH
Q 021793 115 WWSAKIVLW 123 (307)
Q Consensus 115 ~W~~K~l~~ 123 (307)
|+..=.+.=
T Consensus 351 F~~AYliAa 359 (430)
T PF06123_consen 351 FNLAYLIAA 359 (430)
T ss_pred hHHHHHHHH
Confidence 766554443
No 6
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=48.94 E-value=63 Score=26.68 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|++.
T Consensus 97 ~iL~~gl~yew~~G 110 (116)
T MTH00136 97 ILLTLGLIYEWLQG 110 (116)
T ss_pred HHHHHHHHHHHHcC
Confidence 78889999999864
No 7
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=40.97 E-value=1.1e+02 Score=25.24 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
.++++-+.|+|.+.
T Consensus 96 ~iL~~gl~yew~~G 109 (115)
T MTH00106 96 SLLALSLAYEWTQK 109 (115)
T ss_pred HHHHHHHHHHHHcC
Confidence 57888999999763
No 8
>PRK11715 inner membrane protein; Provisional
Probab=40.02 E-value=2e+02 Score=29.33 Aligned_cols=61 Identities=23% Similarity=0.439 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHhhcCcccccCCCCCcccchhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccc
Q 021793 35 YVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSG 114 (307)
Q Consensus 35 ~~Ya~~fll~~i~s~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG 114 (307)
.-|+++|+.-+.++.++-+ .+++.+- +=..|. =|.+|+++||+++.-+- =|=|
T Consensus 304 ~KYgiLFI~LTF~~fFlfE----~~~~~~i--------HpiQYl---LVGlAl~lFYLLLLSlS------------EHig 356 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFE----LLKKLRI--------HPVQYL---LVGLALVLFYLLLLSLS------------EHIG 356 (436)
T ss_pred HhHHHHHHHHHHHHHHHHH----HhcCcee--------cHHHHH---HHHHHHHHHHHHHHHHH------------hhhc
Confidence 5699999988888888764 3444331 111221 36789999998664332 2667
Q ss_pred chhHHHHH
Q 021793 115 WWSAKIVL 122 (307)
Q Consensus 115 ~W~~K~l~ 122 (307)
|+..=.+.
T Consensus 357 F~~AYliA 364 (436)
T PRK11715 357 FTLAYLIA 364 (436)
T ss_pred hHHHHHHH
Confidence 76655443
No 9
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=39.63 E-value=86 Score=26.04 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|++.
T Consensus 103 ~iL~~gl~yew~~G 116 (121)
T PRK06602 103 LVLLVGLVYLWRKG 116 (121)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 10
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=38.40 E-value=3.2e+02 Score=25.15 Aligned_cols=93 Identities=9% Similarity=0.083 Sum_probs=57.5
Q ss_pred chhhcccchhHHHHHHHHHHHhhe----------ecCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc--
Q 021793 108 RDLWHSGWWSAKIVLWIALTIIPF----------LLPSS-FIQLYGEIAHFGAGVFLLIQLISVISFITWLNDCCLSE-- 174 (307)
Q Consensus 108 Ra~ihnG~W~~K~l~~~~l~v~~F----------fIP~~-f~~~y~~va~~gs~lFiliQlIlLvDFa~~wne~w~~~-- 174 (307)
+..-|+-|++++...++.+.+... ..|-. ....-..+..+.+.+.-++..++..=.||.-..+-+..
T Consensus 93 ~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~ai~~~v~~~ia~l~S~~g~~iF~~~a~~~d~r~~~g~~ 172 (211)
T PF07062_consen 93 GESETHCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSFAIFYTVLVFIAALLSLIGLGIFFFNAHMVDNRFVQGIV 172 (211)
T ss_pred cccccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccc
Confidence 334588899999888775554432 11221 11233346667888888999999999999987777754
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHH
Q 021793 175 ---KNAERCHIHVMLIATVAYIICIVGII 200 (307)
Q Consensus 175 ---~~~~~w~~~Li~~T~~~y~~si~~~v 200 (307)
|+...|-+-+-+...+++..++...+
T Consensus 173 ~tYeq~~G~afYl~~~g~l~~~~a~l~sv 201 (211)
T PF07062_consen 173 GTYEQHYGYAFYLHLAGSLLLLFAFLFSV 201 (211)
T ss_pred ceEEEeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 33345655555555555555544433
No 11
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=35.54 E-value=1.2e+02 Score=25.15 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
.++++-+.|+|.+.
T Consensus 104 ~iL~~gl~yew~~G 117 (122)
T PRK07756 104 VMLLVGLAYAWKKK 117 (122)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 12
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=34.30 E-value=1.2e+02 Score=24.70 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 95 ~iL~~gl~yew~~G 108 (112)
T MTH00203 95 ILLTLGLIYEWLQG 108 (112)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999864
No 13
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=32.28 E-value=1.6e+02 Score=24.28 Aligned_cols=14 Identities=14% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
.++++-+.|+|.+.
T Consensus 97 ~iL~~gl~yew~~G 110 (116)
T MTH00042 97 IILTIGLVYEWVNG 110 (116)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 14
>PF14007 YtpI: YtpI-like protein
Probab=31.39 E-value=72 Score=25.49 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=38.2
Q ss_pred hcccchhHHHHHHHHHHHhheecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021793 111 WHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLIQLISVI 161 (307)
Q Consensus 111 ihnG~W~~K~l~~~~l~v~~FfIP~~f~~~y~~va~~gs~lFiliQlIlLv 161 (307)
...+|.--|--+.+|+++..|=+-.-+. .-..+..+.+.+|+++.+.-++
T Consensus 26 ~~k~~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~ 75 (89)
T PF14007_consen 26 MEKKWYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLF 75 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHH
Confidence 5567888899999999998876654444 4446888899999999886654
No 15
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=30.00 E-value=1.3e+02 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=32.5
Q ss_pred CcchhhcccchhHHHHHHHHHHHhheecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Q 021793 106 GTRDLWHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLIQLISVISFITWLNDCCLSE 174 (307)
Q Consensus 106 d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~~f~~~y~~va~~gs~lFiliQlIlLvDFa~~wne~w~~~ 174 (307)
|.|-.+-+=|.++-++++++.++ .|+..+..|..+++.+-++.+++..+++ .+..+..-.++
T Consensus 72 DsR~~i~e~fmP~alv~lv~~~v----~~~~~~~~~~~~~~~~~~~~~iid~~~l---~r~vkk~v~~k 133 (170)
T PF11241_consen 72 DSRRNIGEFFMPVALVLLVLSFV----VPSPQVQLYVTLAMYVLLLLVIIDGVIL---GRRVKKRVAEK 133 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44444444455544444444444 5666666666666666555555555544 34444444454
No 16
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=28.01 E-value=1.8e+02 Score=24.02 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
.++++-+.|+|.+.
T Consensus 98 ~iL~lgl~yew~~G 111 (117)
T MTH00012 98 LILVIGLIHEWREG 111 (117)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999864
No 17
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=27.35 E-value=2.2e+02 Score=24.76 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhHH
Q 021793 155 IQLISVISFITWLNDC 170 (307)
Q Consensus 155 iQlIlLvDFa~~wne~ 170 (307)
+=+++++-+.|+|++.
T Consensus 123 Fl~iL~lGLiYEWkkG 138 (144)
T PRK06432 123 FLAMPLFAVYYAFKMG 138 (144)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3356889999999874
No 18
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=26.44 E-value=88 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccchhHHHHHHHHHHHhheecCchhHHHHHHHHHHHHHHHHHH
Q 021793 76 GAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLI 155 (307)
Q Consensus 76 G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~~f~~~y~~va~~gs~lFili 155 (307)
--.|.||++|+- ..+|..-.+|-|.. ++..+.+ ..-+++.+|+.+
T Consensus 51 EKkalY~isFg~-----------------~g~r~~~~~gewk~-v~~~~~~-----------------~i~~s~~l~~~~ 95 (142)
T PF02936_consen 51 EKKALYRISFGQ-----------------TGPRMKAPTGEWKK-VFGGVFI-----------------FIGFSVLLFIWQ 95 (142)
T ss_dssp HHHHHHHHH-SS------------------HHHHT---SHHHH-HHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcC-----------------cccccccCCcchHH-HHHHHHH-----------------HHHHHHHHHHHH
Confidence 468999999973 35665566676652 2211111 113455567766
Q ss_pred HHHHHHHHHHHHhHHhhcc
Q 021793 156 QLISVISFITWLNDCCLSE 174 (307)
Q Consensus 156 QlIlLvDFa~~wne~w~~~ 174 (307)
-...-=+.-|+.+|.|.++
T Consensus 96 r~~~~~~~P~T~~~Ew~ea 114 (142)
T PF02936_consen 96 RSYVYPPLPHTFSKEWQEA 114 (142)
T ss_dssp HHHT-----GGGSHHHHHH
T ss_pred HHHhCCCCCCCcCHHHHHH
Confidence 6665556689999999885
No 19
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=25.61 E-value=2.3e+02 Score=23.21 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHH
Q 021793 159 SVISFITWLNDC 170 (307)
Q Consensus 159 lLvDFa~~wne~ 170 (307)
+++-+.|+|++.
T Consensus 94 L~~Gl~yew~~G 105 (111)
T MTH00092 94 IFFGFYMEWWYG 105 (111)
T ss_pred HHHHHHHHHHcC
Confidence 788999999874
No 20
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=24.67 E-value=1.8e+02 Score=23.72 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 95 ~iL~~gl~yew~~g 108 (113)
T MTH00018 95 FILTLGLIYEWIKG 108 (113)
T ss_pred HHHHHHHHHHHHcC
Confidence 57888999999863
No 21
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.61 E-value=1.9e+02 Score=23.89 Aligned_cols=14 Identities=21% Similarity=0.110 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 100 ~iL~~gl~yew~~G 113 (118)
T MTH00055 100 IILTIGLIYEWVKG 113 (118)
T ss_pred HHHHHHHHHHHHcC
Confidence 47778999999763
No 22
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=23.51 E-value=43 Score=27.40 Aligned_cols=29 Identities=7% Similarity=-0.086 Sum_probs=20.4
Q ss_pred CCCccchhhhhccccccccccccCCCCchHHHHHHH
Q 021793 3 SGTGAGIQRRAIFKEDSWFSQFRNGSNPWMARYVYA 38 (307)
Q Consensus 3 ~~~~~~~~~~c~~~~~~~c~~c~~~~~s~~tR~~Ya 38 (307)
||.++-| ||. + |.|-||+ +..-..|+.-+
T Consensus 6 calglfc--~cs--s-cfclccp--rhrp~srla~~ 34 (114)
T PF02444_consen 6 CALGLFC--CCS--S-CFCLCCP--RHRPVSRLAAV 34 (114)
T ss_pred chhhhhh--ecc--c-ceeeecC--CCCcHHHHHHH
Confidence 5677777 887 6 8788887 45566777643
No 23
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=23.38 E-value=2.9e+02 Score=22.95 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 102 ~iL~~gl~yew~~G 115 (120)
T CHL00022 102 LILIVGLVYAWRKG 115 (120)
T ss_pred HHHHHHHHHHHHhC
Confidence 67889999999874
No 24
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=22.57 E-value=3e+02 Score=22.82 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 101 ~iL~~Gl~yew~~G 114 (119)
T PRK07928 101 LTVFVAYAYVWRRG 114 (119)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999874
No 25
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.32 E-value=1.1e+02 Score=21.55 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCc
Q 021793 281 WLTIIVILIIFQKSLTKLYKPNWY 304 (307)
Q Consensus 281 ~~siig~i~~~~~~~~~~~~~~~~ 304 (307)
...++..+++....+|..||||-.
T Consensus 12 i~~~~s~v~t~~~~l~awwKNN~v 35 (47)
T PF04688_consen 12 INQLISAVFTIVTALYAWWKNNYV 35 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445679999999999999999853
No 26
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=20.42 E-value=3.4e+02 Score=22.83 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHH
Q 021793 157 LISVISFITWLNDC 170 (307)
Q Consensus 157 lIlLvDFa~~wne~ 170 (307)
+++++-+.|+|.+.
T Consensus 105 ~iL~~Gl~yEw~~G 118 (123)
T MTH00030 105 IVLAIGLAYEWIKG 118 (123)
T ss_pred HHHHHHHHHHHHhC
Confidence 56788999999764
Done!