Query 021793
Match_columns 307
No_of_seqs 111 out of 398
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rko_A NADH-quinone oxidoreduc 48.1 12 0.00042 31.3 3.1 22 153-174 104-128 (147)
2 3j1r_A Archaeal adhesion filam 40.3 29 0.001 20.7 3.0 22 185-206 4-25 (26)
3 2lx0_A Membrane fusion protein 15.7 43 0.0015 20.4 0.6 10 112-121 20-29 (32)
4 1v54_D Cytochrome C oxidase su 15.1 50 0.0017 27.6 1.0 64 76-174 55-118 (147)
5 2y69_D Cytochrome C oxidase su 12.5 65 0.0022 27.5 1.0 64 76-174 77-140 (169)
6 3ixz_A Potassium-transporting 12.4 4.8E+02 0.016 27.7 7.9 25 111-135 960-984 (1034)
7 4b4a_A TATC, SEC-independent p 7.6 7.4E+02 0.025 21.8 6.2 121 134-264 57-204 (249)
8 2zxe_A Na, K-ATPase alpha subu 6.1 6.2E+02 0.021 26.8 5.6 14 121-134 964-977 (1028)
9 3e9v_A Protein BTG2; B-cell tr 5.5 2.8E+02 0.0096 22.1 2.0 21 286-306 30-50 (120)
10 3rlb_A THIT; S-component, ECF 5.4 1.2E+03 0.04 19.7 6.1 51 182-232 122-178 (192)
No 1
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=48.13 E-value=12 Score=31.26 Aligned_cols=22 Identities=0% Similarity=0.033 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHH---hhcc
Q 021793 153 LLIQLISVISFITWLNDC---CLSE 174 (307)
Q Consensus 153 iliQlIlLvDFa~~wne~---w~~~ 174 (307)
+++=+++++.+.|+|++. |.++
T Consensus 104 ~~Fl~iL~~Gl~yEW~~GaL~W~~~ 128 (147)
T 3rko_A 104 AIFIFVLLAGLVYLVRIGALDWTPA 128 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCeEeccC
Confidence 344467889999999986 6654
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=40.26 E-value=29 Score=20.65 Aligned_cols=22 Identities=14% Similarity=0.637 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 021793 185 MLIATVAYIICIVGIIMMYIWY 206 (307)
Q Consensus 185 i~~T~~~y~~si~~~v~my~~f 206 (307)
+..+.++-..++++.++.|.|+
T Consensus 4 iVA~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778889999999999997
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=15.71 E-value=43 Score=20.36 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.7
Q ss_pred cccchhHHHH
Q 021793 112 HSGWWSAKIV 121 (307)
Q Consensus 112 hnG~W~~K~l 121 (307)
.-|||.+|++
T Consensus 20 afgfwlfkyl 29 (32)
T 2lx0_A 20 AFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4588999875
No 4
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=15.09 E-value=50 Score=27.61 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=36.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccchhHHHHHHHHHHHhheecCchhHHHHHHHHHHHHHHHHHH
Q 021793 76 GAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLI 155 (307)
Q Consensus 76 G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~~f~~~y~~va~~gs~lFili 155 (307)
--.|.||+||+ ..-+|..-..|-| |-++..++. +.-++..+|+.+
T Consensus 55 EKkAlYrisF~-----------------~t~ae~~~p~gew--K~v~g~v~~----------------~i~~s~~~f~~~ 99 (147)
T 1v54_D 55 EKVELYRLKFK-----------------ESFAEMNRSTNEW--KTVVGAAMF----------------FIGFTALLLIWE 99 (147)
T ss_dssp HHHHHHHHHCS-----------------SCHHHHTCCCSHH--HHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----------------cccccccCCCCch--hHHHHHHHH----------------HHHHHHHHHHHH
Confidence 45789999997 2345555566766 332221111 112445566666
Q ss_pred HHHHHHHHHHHHhHHhhcc
Q 021793 156 QLISVISFITWLNDCCLSE 174 (307)
Q Consensus 156 QlIlLvDFa~~wne~w~~~ 174 (307)
.+..-=+--|+.++.|.++
T Consensus 100 r~~v~~p~P~T~~~Ewqea 118 (147)
T 1v54_D 100 KHYVYGPIPHTFEEEWVAK 118 (147)
T ss_dssp HHHTCCCCCGGGSHHHHHH
T ss_pred HHHccCCCCCCCCHHHHHH
Confidence 5543335567888888764
No 5
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.45 E-value=65 Score=27.52 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=35.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccchhHHHHHHHHHHHhheecCchhHHHHHHHHHHHHHHHHHH
Q 021793 76 GAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLI 155 (307)
Q Consensus 76 G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~v~~FfIP~~f~~~y~~va~~gs~lFili 155 (307)
--.|.||+||+ ..-+|..-..|-| |-++..++. +.-++..+|+.+
T Consensus 77 EKKAlYriSF~-----------------qt~aE~~~ptgEW--K~V~ggv~~----------------~i~~s~~~f~~~ 121 (169)
T 2y69_D 77 EKVELYRLKFK-----------------ESFAEMNRSTNEW--KTVVGAAMF----------------FIGFTALLLIWE 121 (169)
T ss_dssp HHHHHHHHHCS-----------------SCHHHHTCCCSHH--HHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----------------cccccccCCCCch--hHHHHHHHH----------------HHHHHHHHHHHH
Confidence 45799999997 2345555566766 332221111 112445566666
Q ss_pred HHHHHHHHHHHHhHHhhcc
Q 021793 156 QLISVISFITWLNDCCLSE 174 (307)
Q Consensus 156 QlIlLvDFa~~wne~w~~~ 174 (307)
.+..-=+--|+.++.|.++
T Consensus 122 r~~v~~p~P~T~~~Ewqea 140 (169)
T 2y69_D 122 KHYVYGPIPHTFEEEWVAK 140 (169)
T ss_dssp HHHTCCCCCGGGSHHHHHH
T ss_pred HHHccCCCCCCCCHHHHHH
Confidence 5543335567888888864
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=12.38 E-value=4.8e+02 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=15.6
Q ss_pred hcccchhHHHHHHHHHHHhheecCc
Q 021793 111 WHSGWWSAKIVLWIALTIIPFLLPS 135 (307)
Q Consensus 111 ihnG~W~~K~l~~~~l~v~~FfIP~ 135 (307)
+.|-++..-+++-+++.+...++|.
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~p~ 984 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYCPG 984 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4565555555566666666677883
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=7.64 E-value=7.4e+02 Score=21.78 Aligned_cols=121 Identities=15% Similarity=0.218 Sum_probs=62.0
Q ss_pred CchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-H----hhh
Q 021793 134 PSSFIQLYGEIAHFGAGV----FLLIQLISVISFITWLNDCCLSEKNAERCHIHVMLIATVAYIICIVGII-M----MYI 204 (307)
Q Consensus 134 P~~f~~~y~~va~~gs~l----FiliQlIlLvDFa~~wne~w~~~~~~~~w~~~Li~~T~~~y~~si~~~v-~----my~ 204 (307)
|.+-+..+.+++.+.|.+ +++.|+...+.=+ +- ++++|+....+..+.+++.++.+..- + .+.
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~Pg------Ly--~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~ 128 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPA------LY--SHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALK 128 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------TS--CCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777665554 7788884333110 11 44566766666665555544433322 1 222
Q ss_pred c---cCCCC-C--C--chhHHHHHHHHHHHHHHHHhhccccc-----cccccchhHHHH-----HHHHHHHHHhhcCC
Q 021793 205 W---YTPDP-T--C--LLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLAPGLMGL-----YIIFLCWCAIRSEP 264 (307)
Q Consensus 205 ~---f~~~~-~--C--~lN~~fIt~nlil~ii~s~lSl~p~v-----~~gLLqssiVs~-----Y~~yLt~SAlsseP 264 (307)
+ |++.+ . = +.|.. +++.+-+.+...+..-.|-+ +.|++++....- |..-+..+|+.+ |
T Consensus 129 Fl~~~~~~~i~~~~~~~i~~Y-l~fv~~l~l~fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiT-P 204 (249)
T 4b4a_A 129 FLLGLGFTQLLATPYLSVDMY-ISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIA-P 204 (249)
T ss_dssp TTTCSSSTTSSSSTTEEHHHH-HHHHHHHHHHHHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHC-S
T ss_pred HHHhcchhhhHhhHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHC-C
Confidence 3 33221 1 1 33433 23333333334444444533 678888777653 555566677766 6
No 8
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=6.08 E-value=6.2e+02 Score=26.85 Aligned_cols=14 Identities=21% Similarity=0.017 Sum_probs=7.0
Q ss_pred HHHHHHHHhheecC
Q 021793 121 VLWIALTIIPFLLP 134 (307)
Q Consensus 121 l~~~~l~v~~FfIP 134 (307)
++-+++.+...++|
T Consensus 964 ~~~~~l~~~~~~~p 977 (1028)
T 2zxe_A 964 FEETALAAFLSYCP 977 (1028)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhh
Confidence 33344444555666
No 9
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=5.54 E-value=2.8e+02 Score=22.09 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhCCCCcCC
Q 021793 286 VILIIFQKSLTKLYKPNWYPA 306 (307)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~~ 306 (307)
-|-=.+-..+.+.|++.|||.
T Consensus 30 ~F~~~L~~~L~~~y~~HW~P~ 50 (120)
T 3e9v_A 30 VFSGALQEALTEHYKHHWFPE 50 (120)
T ss_dssp HHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCC
Confidence 344456677889999999994
No 10
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=5.45 E-value=1.2e+03 Score=19.70 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCC------CCchhHHHHHHHHHHHHHHHHh
Q 021793 182 IHVMLIATVAYIICIVGIIMMYIWYTPDP------TCLLNIFFITWTLVLLQLMTSV 232 (307)
Q Consensus 182 ~~Li~~T~~~y~~si~~~v~my~~f~~~~------~C~lN~~fIt~nlil~ii~s~l 232 (307)
.+.+..+++.|......-+++|--|+|.+ +-..|..++..+.++|.++..+
T Consensus 122 lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~l 178 (192)
T 3rlb_A 122 LGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILII 178 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888777777677788888642 1235666666666666666554
Done!