Query 021793
Match_columns 307
No_of_seqs 111 out of 398
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 09:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021793.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021793hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 23.3 1.9E+02 0.014 25.2 9.9 63 73-135 365-430 (472)
2 d1jb0m_ f.23.19.1 (M:) Subunit 6.1 2.3E+02 0.017 15.8 2.8 22 279-300 4-31 (31)
3 d1vjja4 d.3.1.4 (A:141-461) Tr 5.3 31 0.0023 30.1 -2.2 11 164-174 189-199 (321)
4 d1g0da4 d.3.1.4 (A:141-461) Tr 5.3 32 0.0023 30.1 -2.2 11 164-174 191-201 (321)
5 d1ex0a4 d.3.1.4 (A:191-510) Tr 5.1 32 0.0024 30.0 -2.2 11 164-174 182-192 (320)
6 d2bs2c1 f.21.2.1 (C:1-254) Fum 4.8 6E+02 0.044 20.2 6.1 9 110-118 162-170 (254)
7 d2gnoa1 a.80.1.1 (A:209-306) g 4.7 1.7E+02 0.013 20.1 2.0 27 134-160 21-49 (98)
8 d1nekc_ f.21.2.2 (C:) Succinat 4.5 2E+02 0.015 20.6 2.5 17 76-93 25-41 (129)
9 d2z15a1 d.370.1.1 (A:10-126) T 4.4 1.9E+02 0.014 21.2 2.1 20 287-306 28-47 (117)
10 d2q3za4 d.3.1.4 (A:146-461) Tr 4.3 36 0.0026 29.7 -2.5 11 164-174 189-199 (316)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=23.30 E-value=1.9e+02 Score=25.19 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=30.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhccCCCCCc--chh-hcccchhHHHHHHHHHHHhheecCc
Q 021793 73 HCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGT--RDL-WHSGWWSAKIVLWIALTIIPFLLPS 135 (307)
Q Consensus 73 ~C~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~--Ra~-ihnG~W~~K~l~~~~l~v~~FfIP~ 135 (307)
+|.+.+.-+--+++...+-+....-.+..|+.+++ |.. ++|-+|..=+++-+++.+...++|.
T Consensus 365 ~~~~~~~~~a~T~~F~~lv~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 365 DCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp CGGGGGCHHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444433333333332322233334555554432 333 4555555555555566666777885
No 2
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.10 E-value=2.3e+02 Score=15.81 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHHHH------HHhhC
Q 021793 279 TDWLTIIVILIIFQKSL------TKLYK 300 (307)
Q Consensus 279 ~~~~siig~i~~~~~~~------~~~~~ 300 (307)
+|++-.+.++++++-.+ +++||
T Consensus 4 sdtqv~valvial~pg~lafrlatelyk 31 (31)
T d1jb0m_ 4 TDTQVYVALVIALLPAVLAFRLSTELYK 31 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666688887776554 56664
No 3
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=5.29 E-value=31 Score=30.14 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=9.5
Q ss_pred HHHHhHHhhcc
Q 021793 164 ITWLNDCCLSE 174 (307)
Q Consensus 164 a~~wne~w~~~ 174 (307)
.|-|||.|+.+
T Consensus 189 FHvWnE~WM~R 199 (321)
T d1vjja4 189 FHVWNEGWFVR 199 (321)
T ss_dssp EEEEEEEEECC
T ss_pred eeccceeeecc
Confidence 38899999997
No 4
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=5.27 E-value=32 Score=30.13 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=9.7
Q ss_pred HHHHhHHhhcc
Q 021793 164 ITWLNDCCLSE 174 (307)
Q Consensus 164 a~~wne~w~~~ 174 (307)
.|-|||.|+.+
T Consensus 191 fHvWnE~WM~R 201 (321)
T d1g0da4 191 FHCWVESWMSR 201 (321)
T ss_dssp EEEEEEEEECC
T ss_pred ecccceeeeec
Confidence 48999999997
No 5
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=5.14 E-value=32 Score=30.02 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=9.6
Q ss_pred HHHHhHHhhcc
Q 021793 164 ITWLNDCCLSE 174 (307)
Q Consensus 164 a~~wne~w~~~ 174 (307)
.|-|||.|+.+
T Consensus 182 FHvWnE~WM~R 192 (320)
T d1ex0a4 182 YHCWNEAWMTR 192 (320)
T ss_dssp EEEEEEEEECC
T ss_pred eeeceeeeecc
Confidence 48899999987
No 6
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=4.77 E-value=6e+02 Score=20.16 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=5.0
Q ss_pred hhcccchhH
Q 021793 110 LWHSGWWSA 118 (307)
Q Consensus 110 ~ihnG~W~~ 118 (307)
.++|++|..
T Consensus 162 ~~~~~~~~~ 170 (254)
T d2bs2c1 162 RMVSEWMWP 170 (254)
T ss_dssp HHHTTCCHH
T ss_pred HHhChhHHH
Confidence 456665554
No 7
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=4.68 E-value=1.7e+02 Score=20.13 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHH--HHHHHHHHHHHHHH
Q 021793 134 PSSFIQLYGEIAH--FGAGVFLLIQLISV 160 (307)
Q Consensus 134 P~~f~~~y~~va~--~gs~lFiliQlIlL 160 (307)
|.+||..+-.+.- .|--.|++||-..=
T Consensus 21 ~k~ff~lfdqv~ntitg~daflliq~~~r 49 (98)
T d2gnoa1 21 SKEFFALFDQVTNTITGKDAFLLIQRLTR 49 (98)
T ss_dssp GGGHHHHHHHHHHHSCTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 6678887777554 44458999997543
No 8
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=2e+02 Score=20.60 Aligned_cols=17 Identities=29% Similarity=0.170 Sum_probs=10.1
Q ss_pred chhhhHHHHHHHHHHHHH
Q 021793 76 GAQGVLRVSLGCFVFYII 93 (307)
Q Consensus 76 G~~aVyRvsfal~~Ff~l 93 (307)
=.+..+|++- ..+|+.+
T Consensus 25 ~~SI~HRisG-v~l~~~~ 41 (129)
T d1nekc_ 25 IASILHRVSG-VITFVAV 41 (129)
T ss_dssp HHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHH
Confidence 3467899984 4444443
No 9
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.40 E-value=1.9e+02 Score=21.16 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhCCCCcCC
Q 021793 287 ILIIFQKSLTKLYKPNWYPA 306 (307)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~~~ 306 (307)
|--.+-..+.+-|++.|||.
T Consensus 28 F~~~L~~~L~~~y~~HWyp~ 47 (117)
T d2z15a1 28 FGEELERLLKKKYEGHWYPE 47 (117)
T ss_dssp HHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 33456677899999999984
No 10
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=4.34 E-value=36 Score=29.69 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=10.1
Q ss_pred HHHHhHHhhcc
Q 021793 164 ITWLNDCCLSE 174 (307)
Q Consensus 164 a~~wne~w~~~ 174 (307)
+|.|||.|+.+
T Consensus 189 ~H~W~E~wm~r 199 (316)
T d2q3za4 189 FHCWVESWMTR 199 (316)
T ss_dssp EEEEEEEEECC
T ss_pred eeeeeeeeecc
Confidence 79999999986
Done!