BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021794
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 142/240 (59%), Gaps = 5/240 (2%)
Query: 70 EYGCQHYRRRCRIRAPCCNEIFDCRHCH--NEAMNNINVDQKLRHDIPRHEVNQVQQVCV 127
+ GC+HY R C ++APCC++++ CR CH NE K I ++ QQ C
Sbjct: 17 QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCE 76
Query: 128 NCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSH 187
C GEY+C+ C LFD D KKQYHC+ CGICRIG ++FFHC KC C +M L+ H
Sbjct: 77 ECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRH 134
Query: 188 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 247
C+E +CP+C E + +R VLPCGH +H+ C +EM + Y CP+C S DM
Sbjct: 135 KCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDM 193
Query: 248 SKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
++ W + D E+A TPMP Y N V ILCNDC S VQFH+L KC C+SYNT G
Sbjct: 194 TRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 141/247 (57%), Gaps = 23/247 (9%)
Query: 72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQ-------- 123
GC+HY R C ++APCC++++ CR CH D H + R +V +VQ
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69
Query: 124 ---QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 180
Q C +C GEY+C C LFD D K+QYHC+ CGICRIG ++FFHC KC C +
Sbjct: 70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127
Query: 181 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
L+ H C+E +CP+C E + +R VLPCGH +H+ C +EM + Y CP+C
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 186
Query: 241 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 300
S DM++ W + D E+A TPMP Y N V ILCNDC S VQFH+L KC C SY
Sbjct: 187 MHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246
Query: 301 NTRLTRG 307
NT G
Sbjct: 247 NTAQAGG 253
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 10/260 (3%)
Query: 52 EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
+ES + S+ L K + + GC HY R C+++ C+E + CRHCHN+A +++
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLE 175
Query: 107 DQKLRHDIPR--HEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIG 164
+ + + +V Q C C CMG Y+C CKL+DDD +K YHCD CGICRIG
Sbjct: 176 RPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIG 235
Query: 165 G--CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIH 222
D++FHC C C + + N+H C+E + +CP+C EY+F +R+ VI L C H +H
Sbjct: 236 RGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLH 295
Query: 223 KNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKT 282
+ C +E + Y CP C K++ +++ ++ D EI PMP Y I CNDC
Sbjct: 296 QRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSR 354
Query: 283 SNVQFHVLAQKCPNCKSYNT 302
+ ++H L KC +C SYNT
Sbjct: 355 CDTKYHFLGHKCNSCHSYNT 374
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
E +H C VC E F+ R ++ + PC H H+ CL + E + CP+C+ V ++++
Sbjct: 71 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLVKWLEVRK-VCPLCNMPVLQLAQL 128
Query: 251 WEKYDREIAATPMPEA 266
K DR P+P A
Sbjct: 129 HSKQDRGPPQEPLPGA 144
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
E +H C VC E F+ R ++ + PC H H+ CL + E + CP+C+ V ++++
Sbjct: 71 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 128
Query: 251 WEKYDREIAATPMPEA 266
K DR P+P A
Sbjct: 129 HSKQDRGPPQGPLPGA 144
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDRE 257
CP+C + ET + I L CGHT+ K CL ++ H+ ACP ++ + +
Sbjct: 14 CPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACPFDQTTI----------NTD 60
Query: 258 IAATPMPEAYLN--------KKVWILCNDCGKTSNVQFHVLAQKC 294
I P+ A L ++ LC CG + + + A+KC
Sbjct: 61 IELLPVNSALLQLVGAQVPEQQQITLCGGCG-AEDTKHYEEARKC 104
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACP 238
CP+C + ET + I L CGHT+ K CL ++ H+ ACP
Sbjct: 14 CPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACP 238
CP+C + ET + I L CGHT+ K CL ++ H+ ACP
Sbjct: 14 CPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCDMSKVWEKY 254
+CP+C E E + +L CGHTI + CL+++ + CP CSK + ++ + +
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK-ITRITSLTQLT 77
Query: 255 DREIAATPMPEAYLNKKVWIL-CNDCGKTSNVQF 287
D + A L++ V +L C CG+ QF
Sbjct: 78 DNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQF 111
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCDMSKVWEKY 254
+CP+C E E + +L CGHTI + CL+++ + CP CSK + ++ + +
Sbjct: 20 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK-ITRITSLTQLT 78
Query: 255 DREIAATPMPEAYLNKKVWIL-CNDCGKTSNVQF 287
D + A L++ V +L C CG+ QF
Sbjct: 79 DNLTVLKIIDTAGLSEAVGLLMCRGCGRRLPRQF 112
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 38.9 bits (89), Expect = 0.049, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNC-LKEMREHHQYACPICSKSV 244
+CP+C E L +D ++ PC H + + C L R CP+C +V
Sbjct: 793 ECPICLEAL----EDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTV 837
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDR 256
DC VC L +T ++V L C H HK CL+ +H + CP+C + D
Sbjct: 73 DCIVCLSKL-KTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQGHGSDA 131
Query: 257 EIAATPM 263
I+A P+
Sbjct: 132 SISAFPL 138
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSV-CDMSKVWEKY 254
CP+C E E ++L CGH+ KNCL + EH + CP+C +SV C S
Sbjct: 16 CPICLEVFKEP----LMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSVDCSSSPPNVSL 71
Query: 255 DREIAATPMP 264
R I A +P
Sbjct: 72 ARVIDALRLP 81
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 194 MHHDCPVCCEYLFET-RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
M CP+C + + E + +PCGH KNCL++ E+H CP+C K V
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENH-CTCPLCRKEV 153
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 215 LPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246
LPCGH +H +CLK E Q CPIC V D
Sbjct: 375 LPCGHILHLSCLKNWMERSQ-TCPICRLPVFD 405
>sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1
SV=2
Length = 633
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 198 CPVCCEYLFETRQDVIV--LPCGHTIHKNCLKEMREHHQYA------CPICSKSVCDMSK 249
C +C E L E + V CG++IH C+K + + + CP+C K +
Sbjct: 147 CSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANYQSTSNTSMLKCPLCRKEFAPLKL 206
Query: 250 VWEKYDREIAATPMPEA-YLNKKVWILCNDCGKTSNVQFHVLAQ--KCPNCKSY 300
+ E++ E L+K + I CN+C QF + + KC C Y
Sbjct: 207 ILEEFKNSSKLVAAAEKERLDKHLGIPCNNCK-----QFPIEGKCYKCTECIEY 255
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK 253
M +CPVC E + ++V LPC H H +C+ E H CP+C KS+ +
Sbjct: 224 MGLECPVCKED-YTVEEEVRQLPCNHFFHSSCIVPWLELHD-TCPVCRKSLNGEDSTRQS 281
Query: 254 YDREIAAT 261
E +A+
Sbjct: 282 QSTEASAS 289
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 214 VLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
+LPCGH +H CLK E Q CPIC SV
Sbjct: 342 MLPCGHMLHFGCLKSWMERSQ-TCPICRLSV 371
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY 254
C +C E LFE + LPC HT+ K C + E CP C + V W +Y
Sbjct: 16 CQICVEILFEP----VTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSS----WARY 64
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 215 LPCGHTIHKNCLKEMREHHQYACPICSKSVC 245
LPCGH +H +CL+ E Q CPIC +SV
Sbjct: 326 LPCGHILHFHCLRNWLERQQ-TCPICRRSVI 355
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYD 255
DCPVC FE + + +LP C H H +C+ H CP+C + +S +Y
Sbjct: 176 DCPVCLNE-FEEDESLRLLPKCNHAFHISCIDTWLSSHT-NCPLCRAGIAMISVTTPRYS 233
Query: 256 REIAATP 262
+ TP
Sbjct: 234 GPVEVTP 240
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
CPVC E E + LPC HT K C E + CP+C K V +++
Sbjct: 26 CPVCLEIFLEP----VTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARL 74
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 200 VCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245
V C +E +D+I+LPC H+ H C+ + ++ CP+CS V
Sbjct: 289 VICRLDYEDDEDLILLPCKHSYHSECINNWLKINK-VCPVCSAEVS 333
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245
+CPVC E + + V LPC H H +C+ E H CP+C KS+
Sbjct: 227 ECPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHD-TCPVCRKSLS 273
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245
+CPVC E + + V LPC H H +C+ E H CP+C KS+
Sbjct: 226 ECPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHD-TCPVCRKSLS 272
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 35.8 bits (81), Expect = 0.40, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 184 KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 243
K+ P +G + C +C E +F+++ ++ VL CGH HK C K+ + Q CP C S
Sbjct: 1920 KDDVPAPDG---NSCEICHE-IFKSK-NMRVLKCGHKFHKGCFKQWLK-GQSTCPTCGSS 1973
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSK 249
CPVC E + ++ +PC HT H CL + + CP+C S +S+
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSR---CPVCRHSSLRLSR 288
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC--SKSVCDMSKVWEKY 254
DC +C + + R+ LPCGH H +CL+ E +CP C S ++ D ++V E++
Sbjct: 340 DCAICWDSMQAARK----LPCGHLFHNSCLRSWLEQDT-SCPTCRMSLNIADNNRVREEH 394
Query: 255 DRE 257
E
Sbjct: 395 QGE 397
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245
+CPVC E + + V LPC H H +C+ E H +CP+C KS+
Sbjct: 230 ECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLT 276
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
+C +C FE + PCGH+ KNCL+ +H Y CP+C +S+
Sbjct: 478 ECSLCMRLFFEP----VTTPCGHSFCKNCLERCLDHAPY-CPLCKESL 520
>sp|Q9D9X6|ZSWM2_MOUSE E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus GN=Zswim2 PE=1
SV=1
Length = 631
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 198 CPVCCEYLFETRQDVIV--LPCGHTIHKNCLKEMREHHQYA-------CPICSKSVCDMS 248
CP+C E L E + V CG+ +H C++ + + CP+C + +
Sbjct: 147 CPICQEVLLEKKLPVTFCRFGCGNNVHIKCMRILANYQDTGSDSSVLRCPLCREEFAPLK 206
Query: 249 KVWEKYDREIAATPMPEA-YLNKKVWILCNDCGK 281
+ E++ + E L+K + I CN+C +
Sbjct: 207 VILEEFKNSNKLITISEKERLDKHLGIPCNNCNQ 240
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDR 256
+CPVC E + + V LPC H H +C+ E H CP+C KS+ +
Sbjct: 228 ECPVCKED-YTVEEKVRQLPCNHFFHSSCIVPWLELHD-TCPVCRKSLNGEDSTRQTQSS 285
Query: 257 EIAAT 261
E +A+
Sbjct: 286 EASAS 290
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSVCDMSKVWEKYD 255
+C +C E +F+ DVI LPC H H+NC+K +R + C IC V S+
Sbjct: 395 ECTICME-MFKINDDVIQLPCKHYFHENCIKPWLRVNG--TCAICRAPVDPNSQQRNNTS 451
Query: 256 REIAATPMPEAYLNKKVWILCNDCGKT-SNVQFHVLAQK 293
+ A P + N ND G T N F+ +Q
Sbjct: 452 TDSANGHNPSNHANPSTST-TNDQGATLRNESFNAASQS 489
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE-HHQYACPICSKSVCD----MSKVWE 252
CP+C E LF +D +++ CGH ++C+ ++ E +ACP C +S+ D +++V
Sbjct: 146 CPLCVE-LF---KDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITDRKYTINRVLA 201
Query: 253 KYDREIAATPM 263
++ A TP+
Sbjct: 202 NLAKKAACTPV 212
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC--SKSVCDMSKVWEKY 254
DC +C + + R+ LPCGH H +CL+ E +CP C S ++ D S+ E +
Sbjct: 340 DCAICWDSMQAARK----LPCGHLFHNSCLRSWLEQDT-SCPTCRMSLNIADGSRAREDH 394
Query: 255 DRE 257
E
Sbjct: 395 QGE 397
>sp|P87139|YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1
Length = 372
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
+C +C E F V+ LPC H H+ C+ + +++ACP C+ V
Sbjct: 320 ECVICLES-FTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
CP+C E L E + LPC HT+ C + E CP C K V +++
Sbjct: 16 CPICQEILLEP----VTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARL 64
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYD 255
+C VC E F+ + + +LPC H H+ C+ H+ CP+C V W +
Sbjct: 267 ENCAVCIEN-FKVKDIIRILPCKHIFHRICIDPWLLDHR-TCPMCKLDVIKALGYWGE-P 323
Query: 256 REIAATPMPEA 266
++ P PE+
Sbjct: 324 GDVQEMPAPES 334
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDRE 257
CPVC E L E + +PCGH++ +C + + CP+C V ++ K RE
Sbjct: 36 CPVCSEILLEP----VTMPCGHSVCLHCFQRTVKLISLCCPLCRLRVSSWAR---KQSRE 88
Query: 258 IAATPMPEAYLNKKVWIL 275
++ +N ++W L
Sbjct: 89 -------KSLVNAELWEL 99
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDRE 257
CP+C E L E + LPC HT+ C + E CP C K V W R+
Sbjct: 16 CPICQEILLEP----VTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVS----TWA---RQ 64
Query: 258 IAATPMPEAYLNKKVW 273
+ T +NK++W
Sbjct: 65 HSRT---RTLVNKELW 77
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 181 MLLKNSHPCVEGAMHHD---CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 237
M+ + S P + A+ D C +C E L + LPC HT ++CL ++ E + C
Sbjct: 1 MVSQGSSPSLLEALSSDFLACKICLEQLRVPK----TLPCLHTYCQDCLAQLAEGSRLRC 56
Query: 238 PICSKSV 244
P C +SV
Sbjct: 57 PECRESV 63
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYD 255
+C VC E F+ + + +LPC H H+ C+ H+ CP+C V W +
Sbjct: 263 ENCAVCIEN-FKVKDVIRILPCKHIFHRICIDPWLLDHR-TCPMCKLDVIKALGYWGDPE 320
Query: 256 REIAATPMPEA 266
+ P PEA
Sbjct: 321 -DTQELPTPEA 330
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 190 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKS 243
++G CP+C E FE R V+ L C H HK CL+ + ++ CP+C K+
Sbjct: 119 LQGDSVQPCPICKEE-FELRPQVL-LSCSHVFHKACLQAFEKFTNKKTCPLCRKN 171
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE-HHQYACPICSKSVCD----MSKVWE 252
CP+C E LF +D +++ CGH ++C+ + E +ACP C +S+ D +++V
Sbjct: 145 CPLCVE-LF---KDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITDRKYTINRVLA 200
Query: 253 KYDREIAATPM 263
++ A TP+
Sbjct: 201 NLAKKAACTPV 211
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 192 GAMH-HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
G +H +C VC E FE ++ LPCGH H+NC+ ++ CP+C
Sbjct: 611 GTLHCTECVVCLEN-FENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVC 659
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
C VC + FE DV +PC H H++CL E H +CP+C
Sbjct: 216 CAVCMDE-FEDGSDVKQMPCKHVFHQDCLLPWLELHN-SCPVC 256
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 192 GAMH-HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
G +H +C VC E FE ++ LPCGH H+NC+ ++ CP+C
Sbjct: 612 GTLHCTECVVCLEN-FENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVC 660
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 188 PCVEGAMHHDCPV----------CCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 237
P +G D PV C +F+++ +V VL CGH HK C K+ + Q AC
Sbjct: 1936 PKTKGQKAEDVPVRIALGASSCEICHEVFKSK-NVRVLKCGHKYHKGCFKQWLK-GQSAC 1993
Query: 238 PIC 240
P C
Sbjct: 1994 PAC 1996
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 25/150 (16%)
Query: 91 FDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSK 150
C A+ + D + IP ++ + Q ++ F E LF D
Sbjct: 295 LSCTRLGQWAIGYVTADGNILQTIPHNK--PLFQALIDG-------FREGFYLFPDG--- 342
Query: 151 KQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQ 210
+ + D G+C D H + Y + C G+ C +C E +
Sbjct: 343 RNQNPDLTGLCEPTPQD---HIKVTQEQYELY------CEMGSTFQLCKICAE----NDK 389
Query: 211 DVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
DV + PCGH + +CL +E CP C
Sbjct: 390 DVKIEPCGHLMCTSCLTSWQESEGQGCPFC 419
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSV-CDMSKVWEKY 254
CP+C E E ++L CGH+ K+CL + +H + CP+C +SV C S
Sbjct: 16 CPICLEVFKEP----LMLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSVDCSSSPPNVSL 71
Query: 255 DREIAATPMP 264
R I A +P
Sbjct: 72 ARVIDALRLP 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,009,290
Number of Sequences: 539616
Number of extensions: 4916479
Number of successful extensions: 18879
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 512
Number of HSP's that attempted gapping in prelim test: 18233
Number of HSP's gapped (non-prelim): 1042
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)