Query 021794
Match_columns 307
No_of_seqs 247 out of 1369
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.3E-49 4.4E-54 340.9 8.9 124 62-196 8-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 3.1E-27 1.1E-31 184.3 1.8 71 237-307 1-71 (79)
3 2ecm_A Ring finger and CHY zin 99.4 4.4E-13 1.5E-17 94.0 4.7 52 193-245 3-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.3 9.3E-13 3.2E-17 101.0 5.1 52 194-246 25-76 (81)
5 1iym_A EL5; ring-H2 finger, ub 99.3 2.5E-12 8.4E-17 90.3 4.1 49 195-245 5-54 (55)
6 2ep4_A Ring finger protein 24; 99.3 3.4E-12 1.2E-16 94.9 4.7 55 191-247 11-65 (74)
7 2kiz_A E3 ubiquitin-protein li 99.3 4.1E-12 1.4E-16 93.2 4.8 53 192-246 11-63 (69)
8 1x4j_A Ring finger protein 38; 99.2 2.7E-12 9.3E-17 96.0 3.2 52 193-246 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.2 8.1E-12 2.8E-16 100.0 4.6 55 193-247 23-95 (114)
10 2l0b_A E3 ubiquitin-protein li 99.2 8.1E-12 2.8E-16 97.4 4.2 52 193-246 38-89 (91)
11 2ect_A Ring finger protein 126 99.2 1.1E-11 3.7E-16 93.0 4.3 52 193-246 13-64 (78)
12 3ng2_A RNF4, snurf, ring finge 99.2 1.2E-11 4.1E-16 90.7 3.6 53 193-246 8-63 (71)
13 1g25_A CDK-activating kinase a 99.2 2.4E-11 8.2E-16 88.4 5.1 52 195-246 3-55 (65)
14 2ea6_A Ring finger protein 4; 99.2 1.8E-11 6.1E-16 88.9 4.2 52 193-245 13-67 (69)
15 2xeu_A Ring finger protein 4; 99.1 2.6E-11 8.8E-16 86.8 4.1 51 195-246 3-56 (64)
16 2ct2_A Tripartite motif protei 99.1 5.2E-11 1.8E-15 90.5 4.9 53 194-246 14-68 (88)
17 1chc_A Equine herpes virus-1 r 99.1 5.6E-11 1.9E-15 86.7 4.1 49 194-246 4-52 (68)
18 1t1h_A Gspef-atpub14, armadill 99.1 1.8E-10 6E-15 86.3 6.3 49 193-245 6-54 (78)
19 3dpl_R Ring-box protein 1; ubi 99.1 1E-10 3.4E-15 95.0 5.2 34 211-245 67-100 (106)
20 1e4u_A Transcriptional repress 99.0 2.2E-11 7.4E-16 93.7 0.4 58 194-253 10-69 (78)
21 2d8t_A Dactylidin, ring finger 99.0 8.7E-11 3E-15 87.0 3.7 49 193-246 13-61 (71)
22 2csy_A Zinc finger protein 183 99.0 1.2E-10 4E-15 88.2 4.5 48 193-245 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.0 2.2E-10 7.6E-15 84.4 5.6 50 193-246 18-69 (73)
24 2ecy_A TNF receptor-associated 99.0 1.4E-10 4.9E-15 84.5 3.5 49 194-246 14-62 (66)
25 2djb_A Polycomb group ring fin 99.0 1.7E-10 6E-15 85.6 3.7 49 194-246 14-62 (72)
26 2ecn_A Ring finger protein 141 99.0 3.3E-11 1.1E-15 88.6 -0.3 49 193-247 13-61 (70)
27 2yur_A Retinoblastoma-binding 99.0 1.5E-10 5.2E-15 86.6 2.3 49 195-247 15-65 (74)
28 4ap4_A E3 ubiquitin ligase RNF 99.0 2.7E-10 9.4E-15 91.8 4.0 52 194-246 6-60 (133)
29 4ayc_A E3 ubiquitin-protein li 99.0 2.6E-10 8.9E-15 95.0 3.9 46 196-246 54-99 (138)
30 3lrq_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 89.6 3.7 49 195-246 22-70 (100)
31 2ysj_A Tripartite motif-contai 98.9 5.9E-10 2E-14 80.4 4.3 44 193-240 18-63 (63)
32 3fl2_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 91.2 4.4 48 195-246 52-99 (124)
33 2ecw_A Tripartite motif-contai 98.9 9.7E-10 3.3E-14 82.4 4.5 49 194-246 18-71 (85)
34 2ecj_A Tripartite motif-contai 98.9 9.2E-10 3.2E-14 77.5 3.7 43 194-240 14-58 (58)
35 2egp_A Tripartite motif-contai 98.9 2.4E-10 8.1E-15 85.3 0.6 49 194-246 11-65 (79)
36 2d8s_A Cellular modulator of i 98.9 1.2E-09 4.2E-14 84.4 4.1 52 192-245 12-69 (80)
37 3ztg_A E3 ubiquitin-protein li 98.9 1.1E-09 3.8E-14 84.4 3.8 48 194-245 12-61 (92)
38 4a0k_B E3 ubiquitin-protein li 98.9 2.9E-10 1E-14 94.1 0.5 50 195-245 48-111 (117)
39 2ecv_A Tripartite motif-contai 98.9 1.3E-09 4.4E-14 81.7 3.9 49 194-246 18-71 (85)
40 2y43_A E3 ubiquitin-protein li 98.9 1.4E-09 4.7E-14 85.2 4.1 48 195-246 22-69 (99)
41 2ckl_A Polycomb group ring fin 98.8 1.7E-09 5.9E-14 86.0 4.3 48 195-246 15-62 (108)
42 2ckl_B Ubiquitin ligase protei 98.8 1.8E-09 6.1E-14 92.0 4.5 48 195-245 54-101 (165)
43 3l11_A E3 ubiquitin-protein li 98.8 6.2E-10 2.1E-14 89.4 1.4 48 195-246 15-62 (115)
44 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.8E-14 87.4 3.3 48 195-246 23-70 (116)
45 1z6u_A NP95-like ring finger p 98.8 1.3E-09 4.4E-14 92.8 2.9 48 195-246 78-125 (150)
46 4ap4_A E3 ubiquitin ligase RNF 98.8 3.2E-09 1.1E-13 85.5 3.6 53 193-246 70-125 (133)
47 1jm7_A BRCA1, breast cancer ty 98.8 3.3E-09 1.1E-13 84.0 3.3 47 195-245 21-69 (112)
48 3hct_A TNF receptor-associated 98.8 3.6E-09 1.2E-13 85.7 3.4 48 195-246 18-65 (118)
49 2c2l_A CHIP, carboxy terminus 98.6 3.7E-08 1.3E-12 88.4 6.0 50 192-245 205-254 (281)
50 1jm7_B BARD1, BRCA1-associated 98.6 1.8E-08 6.1E-13 81.5 3.4 44 195-245 22-66 (117)
51 2vje_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 73.8 3.1 50 192-246 5-57 (64)
52 2kr4_A Ubiquitin conjugation f 98.6 3E-08 1E-12 76.6 3.7 48 194-246 13-60 (85)
53 1bor_A Transcription factor PM 98.6 1E-08 3.5E-13 73.1 1.0 45 193-245 4-48 (56)
54 3knv_A TNF receptor-associated 98.5 1.3E-08 4.5E-13 85.8 1.1 47 194-244 30-76 (141)
55 4ic3_A E3 ubiquitin-protein li 98.5 2E-08 6.8E-13 75.4 1.7 43 195-246 24-67 (74)
56 2kre_A Ubiquitin conjugation f 98.5 4.5E-08 1.6E-12 78.2 3.9 48 193-245 27-74 (100)
57 2vje_B MDM4 protein; proto-onc 98.5 3.7E-08 1.3E-12 72.1 2.4 49 193-246 5-56 (63)
58 1wgm_A Ubiquitin conjugation f 98.5 7.5E-08 2.6E-12 76.7 4.3 48 194-246 21-69 (98)
59 3hcs_A TNF receptor-associated 98.5 6.2E-08 2.1E-12 82.7 3.5 48 195-246 18-65 (170)
60 2ct0_A Non-SMC element 1 homol 98.5 8.9E-08 3.1E-12 73.3 3.5 49 195-246 15-64 (74)
61 2yu4_A E3 SUMO-protein ligase 98.4 2.2E-07 7.5E-12 72.8 4.7 46 194-243 6-59 (94)
62 2y1n_A E3 ubiquitin-protein li 98.4 1.5E-07 5.1E-12 92.0 4.6 48 195-246 332-379 (389)
63 1wim_A KIAA0161 protein; ring 98.3 5.1E-07 1.8E-11 70.2 5.4 49 194-243 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.3 1.8E-07 6.3E-12 70.1 2.5 43 195-246 25-68 (75)
65 2f42_A STIP1 homology and U-bo 98.3 6.8E-07 2.3E-11 78.9 5.9 49 194-246 105-153 (179)
66 2ea5_A Cell growth regulator w 98.3 5.8E-07 2E-11 66.9 3.7 46 193-247 13-59 (68)
67 2yho_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 69.3 1.8 44 195-247 18-62 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 8.8E-07 3E-11 64.8 3.2 51 191-245 2-58 (60)
69 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.6E-06 5.5E-11 84.0 1.2 54 192-245 305-372 (381)
70 3htk_C E3 SUMO-protein ligase 98.0 3.2E-06 1.1E-10 78.9 3.2 50 193-245 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.8 4.7E-06 1.6E-10 80.0 1.3 43 195-246 295-338 (345)
72 2bay_A PRE-mRNA splicing facto 97.5 4E-05 1.4E-09 56.0 2.5 48 194-246 2-50 (61)
73 3vk6_A E3 ubiquitin-protein li 97.5 6.9E-05 2.4E-09 60.7 4.0 49 197-248 3-51 (101)
74 3nw0_A Non-structural maintena 96.0 0.004 1.4E-07 56.7 3.8 49 195-246 180-229 (238)
75 2jun_A Midline-1; B-BOX, TRIM, 91.8 0.078 2.7E-06 40.9 2.3 33 195-229 3-36 (101)
76 2lbm_A Transcriptional regulat 90.6 0.37 1.3E-05 40.9 5.5 50 190-243 58-117 (142)
77 2ko5_A Ring finger protein Z; 88.6 0.18 6.3E-06 40.4 1.9 45 195-246 28-73 (99)
78 3a43_A HYPD, hydrogenase nicke 87.8 0.19 6.4E-06 42.1 1.6 37 271-307 68-123 (139)
79 2ysm_A Myeloid/lymphoid or mix 86.6 0.24 8.2E-06 39.3 1.6 83 157-243 9-104 (111)
80 2kdx_A HYPA, hydrogenase/ureas 83.1 0.49 1.7E-05 38.1 1.9 35 271-307 71-106 (119)
81 3v43_A Histone acetyltransfera 80.1 0.99 3.4E-05 36.0 2.7 75 164-242 21-111 (112)
82 2jrp_A Putative cytoplasmic pr 79.7 0.27 9.3E-06 38.2 -0.7 68 194-290 1-71 (81)
83 2kwj_A Zinc finger protein DPF 74.8 0.27 9.1E-06 39.6 -2.1 83 156-244 2-109 (114)
84 2lri_C Autoimmune regulator; Z 72.6 2.4 8.1E-05 31.1 2.8 45 195-243 12-59 (66)
85 2jne_A Hypothetical protein YF 72.2 0.44 1.5E-05 38.3 -1.4 66 194-288 31-99 (101)
86 3ql9_A Transcriptional regulat 70.8 4.6 0.00016 33.6 4.4 51 190-244 52-112 (129)
87 4bbq_A Lysine-specific demethy 70.3 0.83 2.8E-05 36.3 -0.2 29 214-242 78-113 (117)
88 1weo_A Cellulose synthase, cat 69.5 6.2 0.00021 31.2 4.6 56 190-245 11-69 (93)
89 2jrp_A Putative cytoplasmic pr 63.5 2.8 9.7E-05 32.4 1.6 21 122-144 40-60 (81)
90 1we9_A PHD finger family prote 58.4 1.6 5.6E-05 31.1 -0.6 50 194-243 5-58 (64)
91 2k16_A Transcription initiatio 54.0 2.4 8.1E-05 31.2 -0.3 47 195-244 18-69 (75)
92 2l5u_A Chromodomain-helicase-D 53.4 7.3 0.00025 27.8 2.2 46 193-242 9-57 (61)
93 1f62_A Transcription factor WS 52.2 8 0.00027 26.2 2.2 45 197-243 2-50 (51)
94 2e6s_A E3 ubiquitin-protein li 50.7 7.8 0.00027 29.1 2.1 65 166-242 7-76 (77)
95 2pv0_B DNA (cytosine-5)-methyl 46.3 16 0.00055 35.6 4.1 69 172-244 70-149 (386)
96 2dkt_A Ring finger and CHY zin 44.4 5.5 0.00019 33.8 0.4 24 138-164 104-127 (143)
97 1mm2_A MI2-beta; PHD, zinc fin 43.0 5.9 0.0002 28.3 0.3 48 193-244 7-57 (61)
98 3uk3_C Zinc finger protein 217 42.7 30 0.001 22.1 3.9 16 234-249 4-19 (57)
99 2k4x_A 30S ribosomal protein S 42.6 19 0.00063 25.5 2.9 27 151-177 17-44 (55)
100 1zfo_A LAsp-1; LIM domain, zin 42.6 6.4 0.00022 24.5 0.4 30 194-226 2-31 (31)
101 3i2d_A E3 SUMO-protein ligase 41.6 23 0.00079 34.3 4.3 48 195-245 249-299 (371)
102 4fo9_A E3 SUMO-protein ligase 40.0 25 0.00086 33.9 4.3 48 195-245 215-265 (360)
103 4ayb_P DNA-directed RNA polyme 39.6 17 0.00057 25.5 2.2 28 133-160 1-31 (48)
104 3u5n_A E3 ubiquitin-protein li 39.3 6.9 0.00024 34.1 0.3 45 193-243 5-54 (207)
105 2ysm_A Myeloid/lymphoid or mix 39.0 7.5 0.00026 30.5 0.4 47 193-241 5-55 (111)
106 3lqh_A Histone-lysine N-methyl 36.1 13 0.00043 32.5 1.4 50 196-246 3-66 (183)
107 3a1b_A DNA (cytosine-5)-methyl 35.2 18 0.00062 31.1 2.3 53 175-232 59-114 (159)
108 1bbo_A Human enhancer-binding 35.0 27 0.00094 22.3 2.7 13 235-247 2-14 (57)
109 3v43_A Histone acetyltransfera 34.9 36 0.0012 26.8 3.8 26 216-241 31-62 (112)
110 4gzn_C ZFP-57, zinc finger pro 33.6 18 0.00063 25.2 1.7 15 234-248 4-18 (60)
111 2yql_A PHD finger protein 21A; 32.6 4.1 0.00014 28.4 -1.9 46 193-242 7-55 (56)
112 3mjh_B Early endosome antigen 32.6 21 0.00072 23.1 1.7 14 235-248 6-19 (34)
113 3o36_A Transcription intermedi 32.3 12 0.0004 31.9 0.6 46 195-244 4-52 (184)
114 6rxn_A Rubredoxin; electron tr 31.7 21 0.00074 24.5 1.7 29 132-160 1-38 (46)
115 2egq_A FHL1 protein; LIM domai 31.6 42 0.0014 23.7 3.5 41 195-246 15-58 (77)
116 2v3b_B Rubredoxin 2, rubredoxi 31.6 26 0.00088 24.8 2.2 12 133-144 1-12 (55)
117 1znf_A 31ST zinc finger from X 31.6 29 0.001 18.2 2.1 14 235-248 2-15 (27)
118 2ee8_A Protein ODD-skipped-rel 31.2 26 0.00089 25.5 2.3 17 233-249 44-60 (106)
119 2kgg_A Histone demethylase jar 30.8 12 0.00041 25.7 0.3 45 197-241 4-52 (52)
120 2jvx_A NF-kappa-B essential mo 30.6 16 0.00054 22.8 0.8 16 234-249 3-18 (28)
121 4gut_A Lysine-specific histone 30.2 82 0.0028 32.8 6.6 81 186-281 4-103 (776)
122 2lv9_A Histone-lysine N-methyl 29.8 49 0.0017 25.5 3.8 47 196-246 29-79 (98)
123 1wep_A PHF8; structural genomi 28.7 34 0.0012 25.2 2.6 49 195-245 12-65 (79)
124 1klr_A Zinc finger Y-chromosom 28.5 49 0.0017 17.5 2.7 16 234-249 2-17 (30)
125 2ku3_A Bromodomain-containing 27.8 20 0.00067 26.5 1.1 50 192-242 13-65 (71)
126 1ard_A Yeast transcription fac 27.8 36 0.0012 18.1 2.0 16 234-249 2-17 (29)
127 2m0e_A Zinc finger and BTB dom 27.3 37 0.0013 17.8 2.0 16 234-249 2-17 (29)
128 3v2d_5 50S ribosomal protein L 27.3 24 0.00082 25.5 1.4 29 272-305 29-57 (60)
129 3f6q_B LIM and senescent cell 27.2 34 0.0012 23.5 2.3 42 194-246 10-51 (72)
130 1e8j_A Rubredoxin; iron-sulfur 26.9 41 0.0014 23.5 2.5 12 133-144 1-12 (52)
131 2zjr_Z 50S ribosomal protein L 26.6 34 0.0012 24.7 2.1 29 272-305 29-57 (60)
132 1vd4_A Transcription initiatio 26.5 33 0.0011 23.1 2.0 13 167-179 37-49 (62)
133 2kmk_A Zinc finger protein GFI 26.2 61 0.0021 21.9 3.5 41 233-284 28-68 (82)
134 1twf_L ABC10-alpha, DNA-direct 26.1 37 0.0013 25.2 2.3 9 152-160 45-53 (70)
135 1x61_A Thyroid receptor intera 25.8 49 0.0017 23.0 2.9 40 195-245 5-44 (72)
136 3shb_A E3 ubiquitin-protein li 25.6 1.2E+02 0.0042 22.5 5.2 41 136-180 11-52 (77)
137 2adr_A ADR1; transcription reg 25.5 62 0.0021 20.7 3.2 14 235-248 3-16 (60)
138 2lce_A B-cell lymphoma 6 prote 25.3 56 0.0019 22.1 3.1 14 234-247 17-30 (74)
139 1p7a_A BF3, BKLF, kruppel-like 25.2 37 0.0013 19.5 1.8 16 234-249 11-26 (37)
140 2gmg_A Hypothetical protein PF 24.7 36 0.0012 27.4 2.2 33 271-304 65-97 (105)
141 3j20_Y 30S ribosomal protein S 24.5 31 0.0011 23.9 1.6 13 119-131 15-27 (50)
142 1paa_A Yeast transcription fac 24.4 41 0.0014 18.0 1.9 16 234-249 2-17 (30)
143 2puy_A PHD finger protein 21A; 24.4 11 0.00038 26.5 -0.8 46 194-243 4-52 (60)
144 2l43_A N-teminal domain from h 24.2 26 0.00089 26.7 1.2 50 194-244 24-76 (88)
145 1dx8_A Rubredoxin; electron tr 23.6 46 0.0016 24.7 2.4 16 131-146 3-18 (70)
146 2elr_A Zinc finger protein 406 23.6 45 0.0015 18.9 2.0 16 234-249 9-24 (36)
147 1x4l_A Skeletal muscle LIM-pro 23.5 39 0.0013 23.6 2.0 40 195-245 5-46 (72)
148 1x68_A FHL5 protein; four-and- 23.4 74 0.0025 22.5 3.5 40 195-245 5-46 (76)
149 1fp0_A KAP-1 corepressor; PHD 23.4 25 0.00086 27.3 1.0 47 193-243 23-72 (88)
150 1weu_A Inhibitor of growth fam 22.9 33 0.0011 26.7 1.5 45 194-245 35-87 (91)
151 3iz5_l 60S ribosomal protein L 22.8 31 0.0011 27.3 1.4 27 269-298 12-38 (94)
152 2kvf_A Zinc finger and BTB dom 22.7 30 0.001 18.5 1.0 15 234-248 3-17 (28)
153 2drp_A Protein (tramtrack DNA- 22.0 15 0.00051 24.5 -0.5 7 170-176 41-47 (66)
154 1x63_A Skeletal muscle LIM-pro 21.7 77 0.0026 22.5 3.3 41 195-246 15-55 (82)
155 2kvh_A Zinc finger and BTB dom 21.6 33 0.0011 18.3 1.0 16 234-249 3-18 (27)
156 1xwh_A Autoimmune regulator; P 21.5 11 0.00039 27.0 -1.3 46 193-242 6-54 (66)
157 3cw1_L U1 small nuclear ribonu 21.4 25 0.00087 26.8 0.6 13 133-145 1-13 (77)
158 4a18_A RPL37, ribosomal protei 21.3 30 0.001 27.3 1.1 30 269-301 12-48 (94)
159 3asl_A E3 ubiquitin-protein li 21.3 1.8E+02 0.006 21.0 5.2 36 145-181 9-45 (70)
160 3m62_A Ubiquitin conjugation f 21.3 74 0.0025 34.5 4.3 48 193-245 889-937 (968)
161 1rim_A E6APC2 peptide; E6-bind 21.1 85 0.0029 17.8 2.9 16 234-249 2-17 (33)
162 1ptq_A Protein kinase C delta 21.0 49 0.0017 21.8 2.0 25 136-160 12-36 (50)
163 1bi6_H Bromelain inhibitor VI; 21.0 21 0.00073 23.6 0.1 16 124-139 16-31 (41)
164 1vq8_Z 50S ribosomal protein L 20.9 26 0.00089 26.9 0.6 19 147-165 40-58 (83)
165 1wyh_A SLIM 2, skeletal muscle 20.9 59 0.002 22.5 2.5 41 195-246 5-45 (72)
166 1x6e_A Zinc finger protein 24; 20.7 43 0.0015 22.7 1.7 12 235-246 43-54 (72)
167 1llm_C Chimera of ZIF23-GCN4; 20.3 73 0.0025 22.3 2.9 15 234-248 31-45 (88)
168 1v5n_A PDI-like hypothetical p 20.2 48 0.0016 25.3 2.0 11 167-177 59-69 (89)
169 1wil_A KIAA1045 protein; ring 20.1 64 0.0022 25.2 2.6 32 193-229 13-47 (89)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.3e-49 Score=340.86 Aligned_cols=124 Identities=42% Similarity=1.059 Sum_probs=115.7
Q ss_pred hhcccCCCcCCCcccccCceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccc-----------cccccccCC
Q 021794 62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQ-----------VQQVCVNCG 130 (307)
Q Consensus 62 ~~~~~~~~~~GC~HY~R~Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~e-----------v~~~C~nCg 130 (307)
..+|++.+++||+||+|+|+|+||||++|||||+||||+ ++|+|+|+++++ +++.|++||
T Consensus 8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~---------~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg 78 (143)
T 2dkt_A 8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTN---------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 78 (143)
T ss_dssp CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHT---------SSSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred cccccccCcCCCcccCCCeeEECCCCCCccchhhhhccc---------cccccchhccceeeecccCccccccCcCCCCC
Confidence 455778889999999999999999999999999999996 479999988865 789999999
Q ss_pred cccceeecCccccccCCCCCCccccCCCCcccccCCcceeeccCCCcceeccccCCccccCCCCCC
Q 021794 131 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 196 (307)
Q Consensus 131 ~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~ 196 (307)
+.||+|||+|||||| ++|+||||++|||||+|++++||||++||+|||++|+++|+|+|+++++
T Consensus 79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999996 4699999999999999999999999999999999999999999998864
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=3.1e-27 Score=184.33 Aligned_cols=71 Identities=48% Similarity=0.832 Sum_probs=38.0
Q ss_pred CCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794 237 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307 (307)
Q Consensus 237 CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~ 307 (307)
||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=4.4e-13 Score=94.03 Aligned_cols=52 Identities=38% Similarity=0.913 Sum_probs=45.0
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+.+..||||++.+.++...+++++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4568899999987676677889999999999999999986 489999998764
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.3e-13 Score=100.97 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
++..||||++++......+++++|||.||.+||.+||+. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356788888875444333444469999999999999985 5799999998753
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.27 E-value=2.5e-12 Score=90.31 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=41.1
Q ss_pred CCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+..|+||++. +..++.++.++ |||.||..|+.+|++. +.+||+||+.+.
T Consensus 5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5689999997 44455677787 9999999999999985 689999998763
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.4e-12 Score=94.87 Aligned_cols=55 Identities=35% Similarity=0.800 Sum_probs=46.0
Q ss_pred CCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 247 (307)
Q Consensus 191 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm 247 (307)
+...+..|+||++. +.....+++|||||.||..||.+|++. +.+||+||+.+..+
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 44557899999997 555666788899999999999999986 56999999998754
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=4.1e-12 Score=93.21 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 192 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...+..|+||++. +.....++.|||||.||..||.+|+.. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3556789999996 555567889999999999999999986 5789999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=95.97 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.....|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 446789999996 555667888999999999999999985 5799999998865
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=8.1e-12 Score=100.04 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccCc--------------ceeEEcCCCCcccHHHHHHHHhc----CCCCCCCCCcccCch
Q 021794 193 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVCDM 247 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~--------------~~v~~LpCGH~fH~~Cl~~wl~~----~~~~CPiCrks~~dm 247 (307)
..+..||||++.|.... ..+++++|||.||..||.+|+.. .+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34578999999864321 23447899999999999999952 357899999988753
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.20 E-value=8.1e-12 Score=97.39 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
..+..|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999996 555567888999999999999999985 6899999998753
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.19 E-value=1.1e-11 Score=93.01 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.....|+||++. +.....+++|+|||.||..||.+|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 346799999996 555567788999999999999999985 5899999998864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=1.2e-11 Score=90.68 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=43.2
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
..+..||||++.+.+. ...++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999975442 244588999999999999999985 5799999998864
No 13
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=2.4e-11 Score=88.42 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=42.1
Q ss_pred CCCCccccc-ccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE-~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++ .+.+....+++++|||+||..|+.+|+.....+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6555444446789999999999999987666789999998863
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=88.94 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
.....||||++.+.+. ...+++++|||.||..||.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975442 234578999999999999999985 689999999875
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=86.84 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=42.0
Q ss_pred CCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++.+.+. .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999975442 244578999999999999999986 6899999998864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=90.52 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d 246 (307)
....||||++.+..+...+++|+|||+||..|+..|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3568999999755544447889999999999999999853 4789999998764
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=5.6e-11 Score=86.72 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++.+. .+++.+||||.||..|+.+|++. +.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 3678999999643 24688999999999999999985 5899999998874
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.07 E-value=1.8e-10 Score=86.33 Aligned_cols=49 Identities=16% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
..+..||||++. +. .+++++|||+||..||.+|+..++.+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 346789999995 44 35678999999999999999865789999999886
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=1e-10 Score=94.98 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.2
Q ss_pred eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 211 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 211 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
.++.++|||.||..||.+||.. +.+||+||+++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4677899999999999999985 689999999864
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=2.2e-11 Score=93.70 Aligned_cols=58 Identities=29% Similarity=0.643 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCcceeEEcC--CCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHH
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK 253 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~Lp--CGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~ 253 (307)
.+..||||+|.+.. .++.++| |||.|+..|+..++....+.||+||+.+......|+.
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 46789999996432 2344554 9999999999998865678999999999876554443
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8.7e-11 Score=87.00 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
..+..||||++.+ . .++.++|||.||..|+.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3467899999964 3 3577899999999999999985 5899999998864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=88.20 Aligned_cols=48 Identities=21% Similarity=0.509 Sum_probs=40.2
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
.....||||++.+ . .+++++|||+||..|+.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF-Q---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC-C---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh-c---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3456899999964 3 2567999999999999999985 689999999986
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=84.43 Aligned_cols=50 Identities=26% Similarity=0.775 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d 246 (307)
..+..||||++. +. .+++++|||.||..|+..|++. ...+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 346789999995 43 3667899999999999999962 45789999998753
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=84.50 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++. +. .++.++|||.||..|+.+|+.....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999986 43 244589999999999999996556789999998864
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=85.57 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.6
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++.+.+ ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999996433 3444599999999999999985 6899999998864
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3.3e-11 Score=88.58 Aligned_cols=49 Identities=22% Similarity=0.734 Sum_probs=40.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 247 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm 247 (307)
.....||||++. +.. +++||||.||..|+.+|+. .+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346789999996 432 7899999999999999998 468999999988754
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-10 Score=86.60 Aligned_cols=49 Identities=22% Similarity=0.679 Sum_probs=39.6
Q ss_pred CCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcC-CCCCCCCCcccCch
Q 021794 195 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDM 247 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-~~~CPiCrks~~dm 247 (307)
+..||||++. +. .+++++ |||+||..||..|+... ..+||+||+.+...
T Consensus 15 ~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 5689999995 43 356788 99999999999999753 36899999986643
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2.7e-10 Score=91.78 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++.+.+. ++.+++++|||+||..||.+|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 457899999975442 344588999999999999999985 5799999998864
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.97 E-value=2.6e-10 Score=94.99 Aligned_cols=46 Identities=30% Similarity=0.852 Sum_probs=39.4
Q ss_pred CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
..||||++.+ . .++++||||+||..||..|+.. +.+||+||+++..
T Consensus 54 ~~C~iC~~~~-~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYF-I---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBC-S---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred CCCcccCccc-C---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 4699999964 3 3678899999999999999985 6889999999874
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=3.4e-10 Score=89.56 Aligned_cols=49 Identities=16% Similarity=0.448 Sum_probs=39.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. .++..++|||.||..||.+|+......||+||+++..
T Consensus 22 ~~~C~IC~~~-~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-cc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4679999996 43 2343399999999999999998655799999999863
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.9e-10 Score=80.37 Aligned_cols=44 Identities=25% Similarity=0.850 Sum_probs=35.8
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 240 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC 240 (307)
..+..||||++. +. .+++++|||+||..||.+|++. ...+||+|
T Consensus 18 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999996 43 3567899999999999999974 45789998
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=5.2e-10 Score=91.17 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=40.5
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. .++++||||+||..||..|+......||+||+.+..
T Consensus 52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999995 44 356789999999999999998666799999999864
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.90 E-value=9.7e-10 Score=82.39 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-----CCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d 246 (307)
.+..||||++. +. .+++++|||+||..|+..|+... ...||+||+.+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35789999996 43 24578999999999999999862 5789999998763
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.2e-10 Score=77.50 Aligned_cols=43 Identities=37% Similarity=1.033 Sum_probs=34.8
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 240 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC 240 (307)
....||||++.+.+ +++++|||.||..||.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35789999996432 456899999999999999654 46789998
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.89 E-value=2.4e-10 Score=85.34 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC------CCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~------~~~CPiCrks~~d 246 (307)
.+..||||++. +. .+++|+|||+||..|+..|+... ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35789999996 44 24568999999999999999752 5789999998864
No 36
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=84.41 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=41.1
Q ss_pred CCCCCCCcccccccccCcceeEEcCCC-----CcccHHHHHHHHhcC-CCCCCCCCcccC
Q 021794 192 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVC 245 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~ 245 (307)
.+.+..|+||++. ++...+ +++||+ |.||..||++||... ..+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999986 443443 579996 999999999999863 368999999875
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=84.38 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 245 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~-~~~~CPiCrks~~ 245 (307)
.+..||||++. +. .++++| |||+|+..||..|+.. ....||+||+.+.
T Consensus 12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35789999985 44 356889 9999999999999864 3478999999973
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.86 E-value=2.9e-10 Score=94.12 Aligned_cols=50 Identities=18% Similarity=0.501 Sum_probs=0.5
Q ss_pred CCCCccccccccc--------------CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~--------------s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+..|+||++.+.+ ....++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4689999887532 1123445799999999999999985 689999999764
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=81.71 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-----CCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-----~~~~CPiCrks~~d 246 (307)
....||||++. +. .++.++|||.||..|+..|+.. ....||+||+.+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999996 43 2456899999999999999875 25889999998863
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=85.21 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=38.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +.. ++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4689999996 432 3344499999999999999984 6899999998873
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.84 E-value=1.7e-09 Score=86.05 Aligned_cols=48 Identities=31% Similarity=0.714 Sum_probs=39.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. +++.+++|||+||..|+..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5689999996 43 24444599999999999999985 5899999998864
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.84 E-value=1.8e-09 Score=92.03 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=39.7
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+..||||++.+.+ ++.+++|||+||..||..|+......||+||+.+.
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3489999996432 45556999999999999999865788999999885
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.83 E-value=6.2e-10 Score=89.44 Aligned_cols=48 Identities=33% Similarity=0.868 Sum_probs=40.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++.+. .+++|+|||+||..||..|+......||+||+.+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457999998643 356789999999999999998667899999998863
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1.4e-09 Score=87.45 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. .++.++|||+||..||.+|+.....+||+||+.+..
T Consensus 23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4679999985 43 356689999999999999998656789999999874
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=92.80 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...||||++. +. .++++||||+||..||..|+......||+||..+..
T Consensus 78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4679999995 43 356799999999999999998766789999998874
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=3.2e-09 Score=85.45 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.7
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.....|+||++.+... ...++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4467899999965431 234578899999999999999985 5799999998864
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.3e-09 Score=84.02 Aligned_cols=47 Identities=23% Similarity=0.754 Sum_probs=38.2
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~ 245 (307)
...||||++. +. .++.++|||+||..|+..|+... ..+||+||..+.
T Consensus 21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999995 43 34568999999999999999753 258999999876
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.75 E-value=3.6e-09 Score=85.73 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. .++.++|||+||..||.+|+.....+||+||+.+..
T Consensus 18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5689999985 43 346789999999999999998655699999999875
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=3.7e-08 Score=88.39 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 192 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
......||||++. +. +++++||||+|++.||..|+.....+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~-~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSB-CS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCH-hc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3457789999994 54 47789999999999999999865566999999886
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.8e-08 Score=81.47 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=37.2
Q ss_pred CCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+..||||++. +. .++++ +|||+||..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5789999985 43 34566 9999999999999986 78999999885
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.60 E-value=1.9e-08 Score=73.84 Aligned_cols=50 Identities=18% Similarity=0.453 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccccCcceeEEc--CCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 192 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...+..|+||++... .++++ ||||. |+..|+..|+.. +..||+||+.+..
T Consensus 5 ~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 345678999998522 34555 99999 899999999874 5789999998864
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.57 E-value=3e-08 Score=76.63 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++. +. ++++++|||+|.+.||..|+.. +.+||+|+..+..
T Consensus 13 ~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTL-MT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccCch-hc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 46789999994 54 4778999999999999999985 6899999998863
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1e-08 Score=73.10 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=36.6
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
.....|+||++. +. .+++|||||+|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 346789999985 44 3578999999999999884 468999999875
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.54 E-value=1.3e-08 Score=85.80 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=38.9
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~ 244 (307)
.+..||||++. +. .++.++|||+|+..||.+|+.....+||+||+++
T Consensus 30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35689999995 43 2466899999999999999986656899999965
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.53 E-value=2e-08 Score=75.44 Aligned_cols=43 Identities=26% Similarity=0.767 Sum_probs=36.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..|+||++.+. .++++||||. |+..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 467999998532 4678899999 999999998 679999998865
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.53 E-value=4.5e-08 Score=78.18 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=40.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
..+..||||++. +. ++++++|||+|.+.||..|+. .+.+||+|+.++.
T Consensus 27 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTL-MT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSB-CS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred cHhhCCcCccCc-cc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 346789999984 54 477889999999999999998 4689999999886
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.50 E-value=3.7e-08 Score=72.08 Aligned_cols=49 Identities=22% Similarity=0.538 Sum_probs=38.5
Q ss_pred CCCCCCcccccccccCcceeEEc--CCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.....|+||++... ..+++ ||||. |+..|+..|.+. +.+||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 34678999998522 23344 99998 999999999874 5789999998864
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.50 E-value=7.5e-08 Score=76.65 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCCCcccccccccCcceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++. +. ++++++|| |+|.+.||..||.. +.+||+||..+..
T Consensus 21 ~~~~CpI~~~~-m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTL-MC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred HhcCCcCcccc-cc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 46789999994 54 47789999 99999999999985 6899999998863
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=6.2e-08 Score=82.69 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.1
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..||||++. +. .++.++|||+|+..|+.+|+.....+||+||..+..
T Consensus 18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 5689999996 43 246689999999999999998655699999998875
No 60
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=8.9e-08 Score=73.33 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=38.2
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d 246 (307)
-.+|+||.+.+ ... ..-..|+|.||..||.+||+.. +.+||+||..+..
T Consensus 15 i~~C~IC~~~i-~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLL-IQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBC-SSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHc-ccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 46899999854 433 2334899999999999999853 2789999988763
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2.2e-07 Score=72.84 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=37.1
Q ss_pred CCCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcC-----CCCCCC--CCcc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 243 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-----~~~CPi--Crks 243 (307)
.+..||||++. |. ++++++ |||+|.+.||.+||... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 36789999984 54 366775 99999999999999752 468999 9866
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.40 E-value=1.5e-07 Score=91.98 Aligned_cols=48 Identities=31% Similarity=0.755 Sum_probs=40.6
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...|+||++.+ ..++.+||||.||..|+..|+.....+||+||..+..
T Consensus 332 ~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899999863 2467899999999999999998556889999998864
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=5.1e-07 Score=70.17 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=37.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-------CCCCCCC--CCcc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS 243 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPi--Crks 243 (307)
....||||++. +.....+.+.+|||.|+..|+..|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999996 443333344589999999999998763 1357999 9998
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.8e-07 Score=70.06 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=34.7
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..|+||++. +. .++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999985 33 4678999999 999999643 679999998865
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.30 E-value=6.8e-07 Score=78.88 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=40.4
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
.+..||||++. +. +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus 105 ~~f~CPI~~el-m~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCcccc-CC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45789999994 54 477889999999999999997643479999998863
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=5.8e-07 Score=66.87 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=37.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 247 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~dm 247 (307)
.....|+||++. + ..+++|||||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG-T---VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS-C---CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC-C---CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 446789999985 2 35789999999 99999984 26799999988753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.18 E-value=4.4e-07 Score=69.30 Aligned_cols=44 Identities=34% Similarity=0.820 Sum_probs=36.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 247 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~dm 247 (307)
+..|+||++.+ ..++++||||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 45799999853 24788999999 999999877 2799999988753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.17 E-value=8.8e-07 Score=64.81 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=38.8
Q ss_pred CCCCCCCCcccccccccCcceeEEcCCC--C---cccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794 191 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 245 (307)
Q Consensus 191 E~~~~~~CPIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~-~~~~CPiCrks~~ 245 (307)
|......|.||++. . ..+ .++||. + .||..||.+|+.. .+.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 44567789999985 2 223 468965 4 8999999999975 4678999998764
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.96 E-value=1.6e-06 Score=83.97 Aligned_cols=54 Identities=20% Similarity=0.472 Sum_probs=39.9
Q ss_pred CCCCCCCcccccccccCcceeE----EcCCCCcccHHHHHHHHhcCC----------CCCCCCCcccC
Q 021794 192 GAMHHDCPVCCEYLFETRQDVI----VLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC 245 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~----~LpCGH~fH~~Cl~~wl~~~~----------~~CPiCrks~~ 245 (307)
.....+|+||++.+.+++.-+. -++|||.||..|+.+|+.+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3457799999997655333221 358999999999999997411 46999999775
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.95 E-value=3.2e-06 Score=78.89 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=40.0
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCC--CCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi--Crks~~ 245 (307)
..+..||||++. |. +|++...|||+|.+.||..|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346789999996 43 35656799999999999999975 3467999 999775
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.79 E-value=4.7e-06 Score=80.03 Aligned_cols=43 Identities=30% Similarity=0.834 Sum_probs=36.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+..|+||++. +. .++.|||||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 5689999995 33 4778899999 999999988 579999998864
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.51 E-value=4e-05 Score=55.97 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
+...|||+++. +. +++++ ++||+|-+.+|.+|++. +.+||+.++.+..
T Consensus 2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 35689999995 44 34566 99999999999999985 4679999988763
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.50 E-value=6.9e-05 Score=60.66 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=39.7
Q ss_pred CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchh
Q 021794 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248 (307)
Q Consensus 197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~ 248 (307)
.|++|.-++. ...+.+||+|+|+.+|+..|.+....+||+|+.++.+.+
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4788875433 246789999999999999998766789999999998653
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.02 E-value=0.004 Score=56.69 Aligned_cols=49 Identities=20% Similarity=0.503 Sum_probs=35.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d 246 (307)
-..|.||.+-+.. + ..--.|+|.||..|+..|++.. +.+||.|+..+..
T Consensus 180 i~~C~iC~~iv~~-g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ-G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS-C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC-C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4568888874332 2 2223499999999999999753 4689999998753
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.76 E-value=0.078 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=24.9
Q ss_pred CCCCcccccccccCcceeEE-cCCCCcccHHHHHHH
Q 021794 195 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM 229 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~w 229 (307)
+..|+||++.++. .++.. +.|||+|+..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 5679999974333 23333 999999999999984
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.62 E-value=0.37 Score=40.87 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=35.0
Q ss_pred cCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHh----------cCCCCCCCCCcc
Q 021794 190 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS 243 (307)
Q Consensus 190 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----------~~~~~CPiCrks 243 (307)
.+...+..|.||.+- ++-+.-=.|--+||..|+.+-+. .+.-.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356678999999972 32111126889999999997542 245789999954
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.59 E-value=0.18 Score=40.38 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=35.4
Q ss_pred CCCCcccccccccCcceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
..+|-.|.- ... .++.|. |+++..|++.+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCWf---~~k---~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWF---ENK---GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCS---CCS---SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhcc---ccC---CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 568888873 221 256775 99999999999985 6899999999874
No 78
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.81 E-value=0.19 Score=42.13 Aligned_cols=37 Identities=22% Similarity=0.621 Sum_probs=29.4
Q ss_pred ceeEEcCCCCCCccc-------------cceee------eccCCCCCCccccccCC
Q 021794 271 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG 307 (307)
Q Consensus 271 ~~~IlCnDC~~~s~~-------------~fH~l------g~kC~~C~SYNT~~~~~ 307 (307)
.+...|.+|+..... .+|++ ..+||.|||++..+++|
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 467899999987532 56776 68999999999987764
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.61 E-value=0.24 Score=39.32 Aligned_cols=83 Identities=22% Similarity=0.543 Sum_probs=44.9
Q ss_pred CCCcccccCC-cceeeccCCCcce-----ecccc----CCccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHH
Q 021794 157 GCGICRIGGC-DNFFHCNKCRCCY-----SMLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 226 (307)
Q Consensus 157 ~CgiCR~G~~-~~ffHC~~C~~C~-----s~~l~----~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl 226 (307)
.|.||..||. ++...|+.|+.-| .+.+. ..=.|.+= ..|.||.+. .+...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 4666766663 5667777777544 33221 11112110 146677753 111111111278899999999
Q ss_pred HHHHhc---CCCCCCCCCcc
Q 021794 227 KEMREH---HQYACPICSKS 243 (307)
Q Consensus 227 ~~wl~~---~~~~CPiCrks 243 (307)
.+-+.. ....||.|...
T Consensus 85 ~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHCC
T ss_pred CCccccCCCCCcCCcCCcCc
Confidence 875432 34678888643
No 80
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=83.08 E-value=0.49 Score=38.15 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=27.9
Q ss_pred ceeEEcCCCCCCccccceeeec-cCCCCCCccccccCC
Q 021794 271 KVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG 307 (307)
Q Consensus 271 ~~~IlCnDC~~~s~~~fH~lg~-kC~~C~SYNT~~~~~ 307 (307)
.+...|.+|+......-. .. +||.|+|.+.++++|
T Consensus 71 p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL--DYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCCS--TTCCCSSSSSCCCEEEES
T ss_pred cceEEcCCCCCEEeCCCC--CCCcCccccCCCcEEecC
Confidence 467899999988765432 46 899999999998765
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.07 E-value=0.99 Score=36.03 Aligned_cols=75 Identities=17% Similarity=0.433 Sum_probs=43.2
Q ss_pred cCCcceeeccCCCcceecc-c-----------cCCccccCCCCCCCCcccccccccCcceeEE-cCCCCcccHHHHHHHH
Q 021794 164 GGCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMR 230 (307)
Q Consensus 164 G~~~~ffHC~~C~~C~s~~-l-----------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl 230 (307)
|.+++...|..|+.-|-.. | ...=.|.+= ..|.||.+.-.+ ...++. -.|...||..|+.+-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCC-ccceEEcCCCCCeeecccCCCCC
Confidence 3457888888887665221 1 122233321 157788752111 112222 2688999999998755
Q ss_pred hc---CCCCCCCCCc
Q 021794 231 EH---HQYACPICSK 242 (307)
Q Consensus 231 ~~---~~~~CPiCrk 242 (307)
.. +...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 43 3467999985
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.67 E-value=0.27 Score=38.17 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=42.5
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCcee
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 273 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~ 273 (307)
|+..||+|...|..... +..+..|-..+... ..||-|++++.... +=-.+.
T Consensus 1 M~~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~~--afCPeCgq~Le~lk-------------------ACGA~~ 51 (81)
T 2jrp_A 1 MEITCPVCHHALERNGD--------TAHCETCAKDFSLQ--ALCPDCRQPLQVLK-------------------ACGAVD 51 (81)
T ss_dssp CCCCCSSSCSCCEECSS--------EEECTTTCCEEEEE--EECSSSCSCCCEEE-------------------ETTEEE
T ss_pred CCCCCCCCCCccccCCC--------ceECccccccCCCc--ccCcchhhHHHHHH-------------------hcCCcC
Confidence 45789999976554322 33355555544432 37999998886421 112368
Q ss_pred EEcCCCCC---Cccccceee
Q 021794 274 ILCNDCGK---TSNVQFHVL 290 (307)
Q Consensus 274 IlCnDC~~---~s~~~fH~l 290 (307)
++||.|++ ++.|.|.+.
T Consensus 52 yFC~~C~~LiSkkrv~f~~~ 71 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVNFVIS 71 (81)
T ss_dssp ECCTTTTCCCCTTSSEEEEC
T ss_pred eeeccCCCEeecceEEEEec
Confidence 99999995 566666654
No 83
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.82 E-value=0.27 Score=39.59 Aligned_cols=83 Identities=20% Similarity=0.542 Sum_probs=47.4
Q ss_pred CCCCcccccC--------CcceeeccCCCcce-----eccc-------cCCccccCCCCCCCCcccccccccCcceeEEc
Q 021794 156 DGCGICRIGG--------CDNFFHCNKCRCCY-----SMLL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL 215 (307)
Q Consensus 156 ~~CgiCR~G~--------~~~ffHC~~C~~C~-----s~~l-------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L 215 (307)
+.|+||..|+ +++...|+.|+.-| ...+ ...=.|.+= ..|.||... .. . ..+++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~-~-~~ll~ 75 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-EN-D-DQLLF 75 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TT-T-TTEEE
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CC-C-CceEE
Confidence 3466665543 46888899887654 3221 112223321 257788753 11 1 12232
Q ss_pred --CCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 021794 216 --PCGHTIHKNCLKEMREH---HQYACPICSKSV 244 (307)
Q Consensus 216 --pCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 244 (307)
.|...||..|+.+=|.. +...||.|...+
T Consensus 76 Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 76 CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 68899999999974432 346688886543
No 84
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.61 E-value=2.4 Score=31.13 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 243 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 243 (307)
...|.||.+. ++-+.=-.|...||..|++..|.. +...||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999752 221111268899999999987754 34679999854
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.25 E-value=0.44 Score=38.34 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCcee
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 273 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~ 273 (307)
|+..||+|...|-..+ |+.++..|-..+.. ...||-|.+++....+ --.+.
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~~--~a~CPdC~q~LevLkA-------------------CGAvd 81 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEM--KALCPDCHQPLQVLKA-------------------CGAVD 81 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCEEEE--EEECTTTCSBCEEEEE-------------------TTEEE
T ss_pred ccccCccCCCcceecC--------CEEECccccchhhc--cccCcchhhHHHHHHH-------------------hcCcc
Confidence 6789999997543321 34446677666544 2579999988765321 22478
Q ss_pred EEcCCCCC---Cccccce
Q 021794 274 ILCNDCGK---TSNVQFH 288 (307)
Q Consensus 274 IlCnDC~~---~s~~~fH 288 (307)
.+|+.|.+ ++.|.|.
T Consensus 82 YFC~~chgLiSKkRV~F~ 99 (101)
T 2jne_A 82 YFCQHGHGLISKKRVEFV 99 (101)
T ss_dssp EEETTTTEEECTTTSEEE
T ss_pred hhhccCCceeecceEEEE
Confidence 99999984 5566554
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.76 E-value=4.6 Score=33.60 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=34.4
Q ss_pred cCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHH----------hcCCCCCCCCCccc
Q 021794 190 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKSV 244 (307)
Q Consensus 190 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl----------~~~~~~CPiCrks~ 244 (307)
.+...+..|.||.+- ++-+.-=.|-..||..|+..-+ ..+.-.|++|+.+-
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 455677889999962 2211112678999999999752 12457899998543
No 87
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=70.34 E-value=0.83 Score=36.27 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.5
Q ss_pred EcCCCCcccHHHHHHHHhc-------CCCCCCCCCc
Q 021794 214 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 242 (307)
Q Consensus 214 ~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCrk 242 (307)
---|...+|..|+...... +.+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3579999999998754321 2377999985
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=69.54 E-value=6.2 Score=31.23 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=41.7
Q ss_pred cCCCCCCCCcccccccccCcceeEEc---CCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 190 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 190 iE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
+.......|.||-+++-.....-.+. -|+-.+++.|++--.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34445578999999864443332333 578899999999988888889999998775
No 89
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=63.48 E-value=2.8 Score=32.40 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=14.9
Q ss_pred cccccccCCcccceeecCccccc
Q 021794 122 VQQVCVNCGVCMGEYFCESCKLF 144 (307)
Q Consensus 122 v~~~C~nCg~~f~~YfC~~Ckl~ 144 (307)
+.+.|..||.. .|||.-|+=.
T Consensus 40 ~Le~lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 40 PLQVLKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp CCCEEEETTEE--EECCTTTTCC
T ss_pred HHHHHHhcCCc--CeeeccCCCE
Confidence 33447778876 8999988644
No 90
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.40 E-value=1.6 Score=31.12 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHh----cCCCCCCCCCcc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 243 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----~~~~~CPiCrks 243 (307)
....||||.....+...-+.--.|..-||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999874222221112236888999999875322 246889999753
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=53.96 E-value=2.4 Score=31.21 Aligned_cols=47 Identities=23% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCCCcccccccccCcceeEEc--CCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 021794 195 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 244 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 244 (307)
...|+||... .. + ..+++ .|.-.||..|+..-+.. ..+.||.|+..+
T Consensus 18 ~~~C~~C~~~-~~-~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKP-DD-G-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBC-CS-S-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCC-CC-C-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3469999864 22 2 12333 68899999999865432 468899998654
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=53.40 E-value=7.3 Score=27.76 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=30.8
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 242 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrk 242 (307)
..+..|.||.+. .+-+.--.|.-.||..|+..-+.. ....||.|.+
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 446789999862 111111267889999999985432 4567999975
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.19 E-value=8 Score=26.18 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=27.6
Q ss_pred CCcccccccccCcceeEE-cCCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794 197 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 243 (307)
Q Consensus 197 ~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 243 (307)
.|.||.+. .....++. -.|.-.||..|+.+=+.. +...||.|+..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777752 11112222 268899999999764332 35679999753
No 94
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.66 E-value=7.8 Score=29.14 Aligned_cols=65 Identities=22% Similarity=0.497 Sum_probs=38.6
Q ss_pred CcceeeccCCCcceeccccCCccccCCCCCCCCcccccccccCcceeEE-cCCCCcccHHHHHHHHhc---C-CCCCCCC
Q 021794 166 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---H-QYACPIC 240 (307)
Q Consensus 166 ~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~---~-~~~CPiC 240 (307)
+.++..|..|.. ...-.|.+ ..|.||... .....++. =.|.-.||..|+.+=|.. + .-.||.|
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~~----c~C~vC~~~--~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCHS----CSCRVCGGK--HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCSS----SSCSSSCCC--CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcC------CCCeECCC----CCCcCcCCc--CCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 456666766654 12334542 368899852 11222222 168899999999864432 3 4679988
Q ss_pred Cc
Q 021794 241 SK 242 (307)
Q Consensus 241 rk 242 (307)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 95
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.34 E-value=16 Score=35.55 Aligned_cols=69 Identities=17% Similarity=0.428 Sum_probs=44.9
Q ss_pred ccCCCcceeccccCCccccCCCCCCCCcccccccccCcceeEEc--CCCCcccHHHHHHHHhc---------CCCCCCCC
Q 021794 172 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---------HQYACPIC 240 (307)
Q Consensus 172 C~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---------~~~~CPiC 240 (307)
--.|..|...-+.....-.+...+..|.+|.+. ++-+.-= .|...|+..||+.++.. ..-.|=+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C 145 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence 444555554444444555677889999999962 2212212 68899999999998832 34568888
Q ss_pred Cccc
Q 021794 241 SKSV 244 (307)
Q Consensus 241 rks~ 244 (307)
...-
T Consensus 146 ~p~p 149 (386)
T 2pv0_B 146 LPSS 149 (386)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8554
No 96
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.39 E-value=5.5 Score=33.78 Aligned_cols=24 Identities=25% Similarity=0.904 Sum_probs=17.2
Q ss_pred cCccccccCCCCCCccccCCCCccccc
Q 021794 138 CESCKLFDDDTSKKQYHCDGCGICRIG 164 (307)
Q Consensus 138 C~~Ckl~ddd~~k~~yHC~~CgiCR~G 164 (307)
|+||++ ...++-|||+.||+|---
T Consensus 104 CgiCR~---G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 104 CGICRI---GPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp TTEEEE---SCGGGEEEETTTTEEEEG
T ss_pred CCceec---cCCcCcEECCcCCeeecc
Confidence 344554 246889999999999543
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=43.01 E-value=5.9 Score=28.25 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=30.8
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 244 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 244 (307)
..+..|.||.+. +.-+.--.|.-.||..|+..-+.. +...||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 446679999852 111111257889999999964432 356799998654
No 98
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=42.69 E-value=30 Score=22.05 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.4
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+.....
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 4678888877776443
No 99
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=42.64 E-value=19 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.667 Sum_probs=13.7
Q ss_pred CccccCCCCc-ccccCCcceeeccCCCc
Q 021794 151 KQYHCDGCGI-CRIGGCDNFFHCNKCRC 177 (307)
Q Consensus 151 ~~yHC~~Cgi-CR~G~~~~ffHC~~C~~ 177 (307)
...-|+.||- .-+....+.++|.+|+.
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCC
Confidence 3455555553 32233345666666654
No 100
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.64 E-value=6.4 Score=24.47 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=18.3
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHH
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 226 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl 226 (307)
|...||.|...++.- +.+. .=|..||..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345788887765542 2222 33788888774
No 101
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.58 E-value=23 Score=34.27 Aligned_cols=48 Identities=15% Similarity=0.409 Sum_probs=34.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCc--ccHHHHHHHHh-cCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Cl~~wl~-~~~~~CPiCrks~~ 245 (307)
...||+=+..|.. +++...|.|. |=.+=+.++.. .....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~---PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKY---PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSS---EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccc---cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4579988876443 7888999998 66655555433 35678999999885
No 102
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.00 E-value=25 Score=33.86 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCCCcccccccccCcceeEEcCCCCc--ccHHHHHHHHh-cCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Cl~~wl~-~~~~~CPiCrks~~ 245 (307)
...|||=+..|. .+++...|.|. |=..=+.++.. .....||+|++.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 357998887644 37888999988 66666665543 34678999999886
No 103
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.62 E-value=17 Score=25.52 Aligned_cols=28 Identities=36% Similarity=0.762 Sum_probs=16.1
Q ss_pred cceeecCcc-ccccCCCC--CCccccCCCCc
Q 021794 133 MGEYFCESC-KLFDDDTS--KKQYHCDGCGI 160 (307)
Q Consensus 133 f~~YfC~~C-kl~ddd~~--k~~yHC~~Cgi 160 (307)
|+.|-|..| +-|+++.- -+--+|+.||.
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 466777777 55655432 26678888886
No 104
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=39.25 E-value=6.9 Score=34.05 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCCCCCcccccccccCcceeEEc--CCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKS 243 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~~~~CPiCrks 243 (307)
..+..|.||.+. ++ +++ .|.-.||..|+.+-+.. +...||.|+..
T Consensus 5 ~~~~~C~~C~~~----g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 446779999852 22 222 57899999999876543 35679999864
No 105
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.03 E-value=7.5 Score=30.46 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=30.1
Q ss_pred CCCCCCcccccccccCcceeEE-cCCCCcccHHHHHHHHhc---CCCCCCCCC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICS 241 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~---~~~~CPiCr 241 (307)
..+..|.||.+. ....+.+. -.|+..||..|+...+.. ....||.|+
T Consensus 5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 346789999863 11111222 378999999999886542 345677665
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=36.06 E-value=13 Score=32.46 Aligned_cols=50 Identities=18% Similarity=0.573 Sum_probs=32.0
Q ss_pred CCCcccccccccCcc-eeEEc---CCCCcccHHHHHH------HHh----cCCCCCCCCCcccCc
Q 021794 196 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKE------MRE----HHQYACPICSKSVCD 246 (307)
Q Consensus 196 ~~CPIClE~lf~s~~-~v~~L---pCGH~fH~~Cl~~------wl~----~~~~~CPiCrks~~d 246 (307)
..||||... +...+ ....+ -|..-||..|..- -++ ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 459999874 43332 11233 5789999999853 121 026999999987664
No 107
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=35.23 E-value=18 Score=31.09 Aligned_cols=53 Identities=19% Similarity=0.546 Sum_probs=34.3
Q ss_pred CCcceeccccCCccccCCCCCCCCcccccccccCcceeEEc---CCCCcccHHHHHHHHhc
Q 021794 175 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH 232 (307)
Q Consensus 175 C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Cl~~wl~~ 232 (307)
|..|...-+.....=.++..+..|.||.+- + .+..- .|...|+.+||+.++..
T Consensus 59 C~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 59 CQNCKNCFLECAYQYDDDGYQSYCTICCGG----R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred hHHHHHHHhhcccccCCCCCcceeeEecCC----C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 334443333333444677889999999962 2 23322 47789999999998753
No 108
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=35.02 E-value=27 Score=22.26 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=8.2
Q ss_pred CCCCCCCcccCch
Q 021794 235 YACPICSKSVCDM 247 (307)
Q Consensus 235 ~~CPiCrks~~dm 247 (307)
|.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 5677777666654
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.86 E-value=36 Score=26.75 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=19.0
Q ss_pred CCCCcccHHHHHH------HHhcCCCCCCCCC
Q 021794 216 PCGHTIHKNCLKE------MREHHQYACPICS 241 (307)
Q Consensus 216 pCGH~fH~~Cl~~------wl~~~~~~CPiCr 241 (307)
.|+..||..|+.. .+....-.||-|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 7999999999952 2334556788776
No 110
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=33.60 E-value=18 Score=25.15 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=9.9
Q ss_pred CCCCCCCCcccCchh
Q 021794 234 QYACPICSKSVCDMS 248 (307)
Q Consensus 234 ~~~CPiCrks~~dm~ 248 (307)
.|.|++|.+.+....
T Consensus 4 py~C~~C~k~F~~~~ 18 (60)
T 4gzn_C 4 PFFCNFCGKTYRDAS 18 (60)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CccCCCCCCEeCCHH
Confidence 366777777776543
No 111
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.60 E-value=4.1 Score=28.45 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=29.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 242 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrk 242 (307)
..+..|.||.+. +.-+.--.|.-.||..|+.+-|.. ....||.|.+
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346779999863 211111268899999999964432 3456888754
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.57 E-value=21 Score=23.14 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.4
Q ss_pred CCCCCCCcccCchh
Q 021794 235 YACPICSKSVCDMS 248 (307)
Q Consensus 235 ~~CPiCrks~~dm~ 248 (307)
+.||+|.+.+....
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 78999999988643
No 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.31 E-value=12 Score=31.86 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 244 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 244 (307)
+..|.||.+. ++-+.-=.|.-.||..|+.+-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 5679999852 221111257899999999876543 357799999643
No 114
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.71 E-value=21 Score=24.48 Aligned_cols=29 Identities=31% Similarity=0.902 Sum_probs=17.8
Q ss_pred ccceeecCcccc-ccC---CC-----CCCccccCCCCc
Q 021794 132 CMGEYFCESCKL-FDD---DT-----SKKQYHCDGCGI 160 (307)
Q Consensus 132 ~f~~YfC~~Ckl-~dd---d~-----~k~~yHC~~Cgi 160 (307)
.|.+|-|.+|-+ ||. |+ --.-|.|+.||.
T Consensus 1 ~m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 1 XMQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp -CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 378899999966 452 21 112467777774
No 115
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.61 E-value=42 Score=23.68 Aligned_cols=41 Identities=22% Similarity=0.524 Sum_probs=28.1
Q ss_pred CCCCccccccccc---CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~---s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...|+.|.+.+.. ....+..+ |..+|.+| ++|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTT---------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCccc---------CEehhcCCCCCC
Confidence 4579999987664 22333333 78888765 568899988763
No 116
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.60 E-value=26 Score=24.80 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.6
Q ss_pred cceeecCccccc
Q 021794 133 MGEYFCESCKLF 144 (307)
Q Consensus 133 f~~YfC~~Ckl~ 144 (307)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 678999999654
No 117
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.58 E-value=29 Score=18.24 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.3
Q ss_pred CCCCCCCcccCchh
Q 021794 235 YACPICSKSVCDMS 248 (307)
Q Consensus 235 ~~CPiCrks~~dm~ 248 (307)
|.|++|.+.+....
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 68999999987644
No 118
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=31.16 E-value=26 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=13.1
Q ss_pred CCCCCCCCCcccCchhH
Q 021794 233 HQYACPICSKSVCDMSK 249 (307)
Q Consensus 233 ~~~~CPiCrks~~dm~~ 249 (307)
..|.|++|.+.+.....
T Consensus 44 ~~~~C~~C~~~f~~~~~ 60 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDH 60 (106)
T ss_dssp CCCBCSSSCCBCSCHHH
T ss_pred CCcCCCCccchhCCHHH
Confidence 35899999999886543
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=30.82 E-value=12 Score=25.70 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCcccccccccCcceeEEc-CCCCcccHHHHHHH---HhcCCCCCCCCC
Q 021794 197 DCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEM---REHHQYACPICS 241 (307)
Q Consensus 197 ~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~w---l~~~~~~CPiCr 241 (307)
.|+||..+..+...-+.-- .|.--||..|+.-- .....|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778876432221111112 57888999997642 112579999985
No 120
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=30.58 E-value=16 Score=22.80 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=12.8
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.++||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999998888643
No 121
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=30.18 E-value=82 Score=32.75 Aligned_cols=81 Identities=27% Similarity=0.621 Sum_probs=50.1
Q ss_pred CccccCCCCCCCCccccccccc----Ccc--eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHh-----
Q 021794 186 SHPCVEGAMHHDCPVCCEYLFE----TRQ--DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY----- 254 (307)
Q Consensus 186 ~H~CiE~~~~~~CPIClE~lf~----s~~--~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~l----- 254 (307)
+-+|....-...||+|.-.+.+ ++. ..--|.||--|+.+|++.+.+.. |+-.+.-..|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~--------~~~~~~~~~w~~~~~~~~ 75 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH--------KDGYDKYTTWKKIWTSNG 75 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT--------STTHHHHHHHHHHHHHTC
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC--------cchhHHHHHHHHHHHhCC
Confidence 4566666666788998754321 111 24457999999999999988742 2222333456553
Q ss_pred ------HHHHhcCCCChhhhcCceeEEcC--CCCC
Q 021794 255 ------DREIAATPMPEAYLNKKVWILCN--DCGK 281 (307)
Q Consensus 255 ------D~eia~~pmPeey~~~~~~IlCn--DC~~ 281 (307)
...++.+.+| -|+.|. +|++
T Consensus 76 ~~~~~~~~~~~~~~l~-------~~~~c~~~~c~~ 103 (776)
T 4gut_A 76 KTEPSPKAFMADQQLP-------YWVQCTKPECRK 103 (776)
T ss_dssp CSCCCHHHHHHHHTSC-------CEEECCCTTTCC
T ss_pred ccchhHHHHHHhccCc-------HhhhcCcccccc
Confidence 2234444444 378899 9997
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.83 E-value=49 Score=25.55 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=30.0
Q ss_pred CCCcccccccccCcceeEEc--CCCCcccHHHHHHHHhc--CCCCCCCCCcccCc
Q 021794 196 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH--HQYACPICSKSVCD 246 (307)
Q Consensus 196 ~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d 246 (307)
..| ||... .+. ..++. .|.-.||..|+..-+.. ..+.||.|+..-.+
T Consensus 29 vrC-iC~~~-~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~ 79 (98)
T 2lv9_A 29 TRC-ICGFT-HDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLD 79 (98)
T ss_dssp CCC-TTSCC-SCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCC
T ss_pred EEe-ECCCc-cCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCC
Confidence 356 78653 222 23333 68899999999763322 35899999865544
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.65 E-value=34 Score=25.20 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCCccccccccc-CcceeEEcCCCCcccHHHHHHHH----hcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFE-TRQDVIVLPCGHTIHKNCLKEMR----EHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~-s~~~v~~LpCGH~fH~~Cl~~wl----~~~~~~CPiCrks~~ 245 (307)
...| ||... .+ ...-+.--.|.--||..|+.--. ....|.||.|+....
T Consensus 12 ~~~C-~C~~~-~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQP-YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCS-CCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCc-cCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4456 88764 22 22112223688999999996321 124689999997653
No 124
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=28.45 E-value=49 Score=17.48 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.5
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999986544
No 125
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.81 E-value=20 Score=26.47 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=31.3
Q ss_pred CCCCCCCcccccccccCcceeEEc--CCCCcccHHHHHHH-HhcCCCCCCCCCc
Q 021794 192 GAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSK 242 (307)
Q Consensus 192 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~w-l~~~~~~CPiCrk 242 (307)
...+..|.||.+.-.... ..+++ .|.-.||..|+..- +-.+.-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345778999986311112 22333 68899999999853 2224567888864
No 126
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.80 E-value=36 Score=18.08 Aligned_cols=16 Identities=13% Similarity=0.758 Sum_probs=12.4
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 3789999999886443
No 127
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.32 E-value=37 Score=17.84 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.3
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999999876543
No 128
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=27.31 E-value=24 Score=25.51 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=22.4
Q ss_pred eeEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 021794 272 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 305 (307)
Q Consensus 272 ~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~ 305 (307)
..+.|..|++. ...| +-|+.||.|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 46889999974 3345 45999999999876
No 129
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.24 E-value=34 Score=23.49 Aligned_cols=42 Identities=17% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
....|+.|.+.+.... .++ ..=|..+|.+|+ +|-.|++++.+
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~-~~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIV-NSNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEE-EETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCc-eEE-EeCcCeeCcCCC---------cccCCCCCCCC
Confidence 3467899988765432 222 134778887765 68888888764
No 130
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.87 E-value=41 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.8
Q ss_pred cceeecCccccc
Q 021794 133 MGEYFCESCKLF 144 (307)
Q Consensus 133 f~~YfC~~Ckl~ 144 (307)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (52)
T 1e8j_A 1 MDIYVCTVCGYE 12 (52)
T ss_dssp CCCEECSSSCCC
T ss_pred CCcEEeCCCCeE
Confidence 678999999654
No 131
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=26.61 E-value=34 Score=24.66 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=22.7
Q ss_pred eeEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 021794 272 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 305 (307)
Q Consensus 272 ~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~ 305 (307)
..+.|..|++. ...| +-|++||-|+-+++
T Consensus 29 ~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGK--KLSH---HICPNCGYYDGRQV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---BCCTTTCBSSSBCS
T ss_pred CceECCCCCCE--eCCc---eEcCCCCcCCCEEe
Confidence 56789999977 3344 56999999999886
No 132
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.52 E-value=33 Score=23.05 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=5.6
Q ss_pred cceeeccCCCcce
Q 021794 167 DNFFHCNKCRCCY 179 (307)
Q Consensus 167 ~~ffHC~~C~~C~ 179 (307)
+.-|.|..||.-+
T Consensus 37 ~k~~~C~~C~k~f 49 (62)
T 1vd4_A 37 TGTFRCTFCHTEV 49 (62)
T ss_dssp TTEEBCSSSCCBC
T ss_pred CCCEECCCCCCcc
Confidence 3344444444433
No 133
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=26.22 E-value=61 Score=21.91 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEEcCCCCCCcc
Q 021794 233 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSN 284 (307)
Q Consensus 233 ~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~IlCnDC~~~s~ 284 (307)
..+.|++|.+.+.....+.+-+..-. . .....|..|++...
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~----------~-~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHT----------G-EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHH----------T-CCCEECTTTSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhc----------C-CCCCcCCCcchhhC
Confidence 45789999998876544332222111 1 12367888887653
No 134
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.07 E-value=37 Score=25.20 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=5.2
Q ss_pred ccccCCCCc
Q 021794 152 QYHCDGCGI 160 (307)
Q Consensus 152 ~yHC~~Cgi 160 (307)
.-+|..||-
T Consensus 45 ~irCp~CG~ 53 (70)
T 1twf_L 45 AVRCKDCGH 53 (70)
T ss_dssp TTCCSSSCC
T ss_pred CccCCCCCc
Confidence 346666664
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=49 Score=22.97 Aligned_cols=40 Identities=20% Similarity=0.559 Sum_probs=23.9
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
...|+.|.+.+......+. .=|..+|.+| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccC---------CcccccCCcCC
Confidence 4567788776554222222 2367777665 45777887774
No 136
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.62 E-value=1.2e+02 Score=22.46 Aligned_cols=41 Identities=27% Similarity=0.699 Sum_probs=22.0
Q ss_pred eecCccccccCCCCCCccccCCCCcccccC-CcceeeccCCCccee
Q 021794 136 YFCESCKLFDDDTSKKQYHCDGCGICRIGG-CDNFFHCNKCRCCYS 180 (307)
Q Consensus 136 YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~-~~~ffHC~~C~~C~s 180 (307)
-+|..|+ |+++..---| .|-||+.++ .+....|+.|..-|-
T Consensus 11 ~~c~~c~---~~~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 11 PSCKHCK---DDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp CSCTTTT---TCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEE
T ss_pred ccccccC---CCCCCCCCCC-cCCccCCCCCCcceeEeCCCCCccC
Confidence 3555665 3333333333 344555544 356788888876554
No 137
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.48 E-value=62 Score=20.75 Aligned_cols=14 Identities=14% Similarity=0.847 Sum_probs=9.9
Q ss_pred CCCCCCCcccCchh
Q 021794 235 YACPICSKSVCDMS 248 (307)
Q Consensus 235 ~~CPiCrks~~dm~ 248 (307)
|.|++|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (60)
T 2adr_A 3 FVCEVCTRAFARQE 16 (60)
T ss_dssp BCCTTTCCCBSCHH
T ss_pred CcCCCCccccCCHH
Confidence 67888888777543
No 138
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.26 E-value=56 Score=22.12 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=8.3
Q ss_pred CCCCCCCCcccCch
Q 021794 234 QYACPICSKSVCDM 247 (307)
Q Consensus 234 ~~~CPiCrks~~dm 247 (307)
.|.|++|.+.+...
T Consensus 17 ~~~C~~C~k~f~~~ 30 (74)
T 2lce_A 17 PYKCDRCQASFRYK 30 (74)
T ss_dssp SBCCTTSSCCBSCH
T ss_pred CeECCCCCceeCCH
Confidence 35666666666543
No 139
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.18 E-value=37 Score=19.53 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.7
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.||+|.+.+.....
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SBCCTTTCCCBSSHHH
T ss_pred CccCCCCCcccCcHHH
Confidence 5889999999986543
No 140
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.74 E-value=36 Score=27.39 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=23.4
Q ss_pred ceeEEcCCCCCCccccceeeeccCCCCCCccccc
Q 021794 271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRL 304 (307)
Q Consensus 271 ~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~ 304 (307)
.....|.+||-.+.... ...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEI-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCS-SCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccC-CCCCCCcCCCCCccCC
Confidence 45678999998862111 2346999999999765
No 141
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.50 E-value=31 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=8.0
Q ss_pred ccccccccccCCc
Q 021794 119 VNQVQQVCVNCGV 131 (307)
Q Consensus 119 v~ev~~~C~nCg~ 131 (307)
|+..-..|..||.
T Consensus 15 v~~~~k~CP~CG~ 27 (50)
T 3j20_Y 15 VIRKNKFCPRCGP 27 (50)
T ss_dssp EECSSEECSSSCS
T ss_pred EEEecccCCCCCC
Confidence 3334566777876
No 142
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.42 E-value=41 Score=18.04 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=12.2
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 3789999998876543
No 143
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.38 E-value=11 Score=26.46 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=30.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 243 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 243 (307)
.+..|.||.+. +.-+.--.|.-.||..|+.+-+.. +...||.|...
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999862 211111268899999999964432 34679988653
No 144
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=24.16 E-value=26 Score=26.74 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCcceeEEc--CCCCcccHHHHHHH-HhcCCCCCCCCCccc
Q 021794 194 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSKSV 244 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~w-l~~~~~~CPiCrks~ 244 (307)
.+..|.||.+.-..+ ...+++ .|.-.||..|+..- +-.+.-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~-~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCS-EEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCC-CCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 467899999631111 122232 67889999999863 222456799887544
No 145
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.61 E-value=46 Score=24.67 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=11.7
Q ss_pred cccceeecCccccccC
Q 021794 131 VCMGEYFCESCKLFDD 146 (307)
Q Consensus 131 ~~f~~YfC~~Ckl~dd 146 (307)
..|.+|.|.+|-+.=|
T Consensus 3 ~~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 3 IDEGKYECEACGYIYE 18 (70)
T ss_dssp CCSSCEEETTTCCEEC
T ss_pred CCCceEEeCCCCEEEc
Confidence 3578999999965533
No 146
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.60 E-value=45 Score=18.90 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.8
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+.....
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 5889999999986543
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.49 E-value=39 Score=23.57 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=27.0
Q ss_pred CCCCccccccccc--CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~--s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
...|+-|.+.+.. +.. + +..-|..+|.+| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-Y-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-C-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-e-EEECCcccCccc---------CEeccCCCcCC
Confidence 4578888887664 222 2 223588888766 57889998875
No 148
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=74 Score=22.46 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=27.9
Q ss_pred CCCCccccccccc--CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 195 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 195 ~~~CPIClE~lf~--s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
...|+.|.+.+.. ....+. .=|..+|.+| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCccc---------CChhhCCCcCC
Confidence 4578999887664 223333 3478889876 56889998876
No 149
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.38 E-value=25 Score=27.27 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=31.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 243 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 243 (307)
..+..|.||.+. ++-+.--.|.-.||..|+.+=|.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999862 221111267889999999875543 34679999853
No 150
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.87 E-value=33 Score=26.69 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=28.2
Q ss_pred CCCCCcccccccccCcceeEEc--C--CC-CcccHHHHHHHHhc---CCCCCCCCCcccC
Q 021794 194 MHHDCPVCCEYLFETRQDVIVL--P--CG-HTIHKNCLKEMREH---HQYACPICSKSVC 245 (307)
Q Consensus 194 ~~~~CPIClE~lf~s~~~v~~L--p--CG-H~fH~~Cl~~wl~~---~~~~CPiCrks~~ 245 (307)
....| ||...-+ + .++. . |. ..||..|+. |.. ..+.||.|+....
T Consensus 35 e~~yC-iC~~~~~--g--~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY--G--EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC--S--CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC--C--CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34567 8987422 2 2222 3 55 689999998 332 4688999987543
No 151
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=22.78 E-value=31 Score=27.31 Aligned_cols=27 Identities=33% Similarity=0.901 Sum_probs=22.3
Q ss_pred cCceeEEcCCCCCCccccceeeeccCCCCC
Q 021794 269 NKKVWILCNDCGKTSNVQFHVLAQKCPNCK 298 (307)
Q Consensus 269 ~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~ 298 (307)
+.+..|+|.-|+.+ .||+--..|..||
T Consensus 12 ~~KtHtlCrRCG~~---syH~qK~~Ca~CG 38 (94)
T 3iz5_l 12 RNKTHTLCVRCGRR---SFHLQKSTCSSCG 38 (94)
T ss_dssp CCCSEEECTTTCSE---EEEGGGTEETTTC
T ss_pred CCCccceecCcCch---hhhcccccccccC
Confidence 44679999999976 4777778999999
No 152
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.72 E-value=30 Score=18.47 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=11.8
Q ss_pred CCCCCCCCcccCchh
Q 021794 234 QYACPICSKSVCDMS 248 (307)
Q Consensus 234 ~~~CPiCrks~~dm~ 248 (307)
.|.|++|.+.+....
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 478999999888644
No 153
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=22.02 E-value=15 Score=24.46 Aligned_cols=7 Identities=29% Similarity=0.932 Sum_probs=2.6
Q ss_pred eeccCCC
Q 021794 170 FHCNKCR 176 (307)
Q Consensus 170 fHC~~C~ 176 (307)
|.|..|+
T Consensus 41 ~~C~~C~ 47 (66)
T 2drp_A 41 YPCPFCF 47 (66)
T ss_dssp EECTTTC
T ss_pred eECCCCC
Confidence 3333333
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=77 Score=22.52 Aligned_cols=41 Identities=24% Similarity=0.594 Sum_probs=26.0
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...|+.|.+.+......+ ..=|..+|.+| ++|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV--EYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE--ECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE--EECcccccccc---------CchhhCCCccCC
Confidence 457888888765322222 23377888665 568888887764
No 155
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.61 E-value=33 Score=18.25 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.2
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 4789999999886543
No 156
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.45 E-value=11 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=30.0
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 242 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrk 242 (307)
..+..|.||.+. +.-+.--.|.-.||..|+.+-|.. +...||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 346789999862 221111268889999999864432 3467988874
No 157
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=21.36 E-value=25 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.979 Sum_probs=10.6
Q ss_pred cceeecCcccccc
Q 021794 133 MGEYFCESCKLFD 145 (307)
Q Consensus 133 f~~YfC~~Ckl~d 145 (307)
|.+|||+-|+.|-
T Consensus 1 mPkYyCdYCd~~l 13 (77)
T 3cw1_L 1 MPKFYCDYCDTYL 13 (77)
T ss_pred CCCcccccCCcee
Confidence 6789999998774
No 158
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=21.30 E-value=30 Score=27.34 Aligned_cols=30 Identities=33% Similarity=0.912 Sum_probs=24.8
Q ss_pred cCceeEEcCCCCCCccccceeeeccCCCCC-------Ccc
Q 021794 269 NKKVWILCNDCGKTSNVQFHVLAQKCPNCK-------SYN 301 (307)
Q Consensus 269 ~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~-------SYN 301 (307)
+.+..|+|.-|+.+ .||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~~---syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 12 HQKTHTLCRRCGKA---TYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCEEECTTTCSE---EEETTTTEESSSCGGGSSCCCCT
T ss_pred CCCccceecCcCch---hhhhccccccccCCcHHHhcCcc
Confidence 34679999999976 4777778999999 888
No 159
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.30 E-value=1.8e+02 Score=21.00 Aligned_cols=36 Identities=22% Similarity=0.627 Sum_probs=20.9
Q ss_pred cCCCCCCccccCCCCcccccC-CcceeeccCCCcceec
Q 021794 145 DDDTSKKQYHCDGCGICRIGG-CDNFFHCNKCRCCYSM 181 (307)
Q Consensus 145 ddd~~k~~yHC~~CgiCR~G~-~~~ffHC~~C~~C~s~ 181 (307)
.|+....=..| .|.||+.+. .++..-|+.|..-|-+
T Consensus 9 ~~~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 9 KDDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp TTCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred cCCCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 34443333444 456666543 4678888888765543
No 160
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=21.29 E-value=74 Score=34.47 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=39.5
Q ss_pred CCCCCCcccccccccCcceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC 245 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~ 245 (307)
..+-.|||=++-|. +++++|=| ++|-+..|..|+.. +.+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM~----DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMK----DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHh----CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 44567999998543 47889998 69999999999985 679999888776
No 161
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.14 E-value=85 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.810 Sum_probs=12.6
Q ss_pred CCCCCCCCcccCchhH
Q 021794 234 QYACPICSKSVCDMSK 249 (307)
Q Consensus 234 ~~~CPiCrks~~dm~~ 249 (307)
.|.|++|.+.+...+.
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 3789999999986544
No 162
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=21.02 E-value=49 Score=21.79 Aligned_cols=25 Identities=28% Similarity=0.763 Sum_probs=12.0
Q ss_pred eecCccccccCCCCCCccccCCCCc
Q 021794 136 YFCESCKLFDDDTSKKQYHCDGCGI 160 (307)
Q Consensus 136 YfC~~Ckl~ddd~~k~~yHC~~Cgi 160 (307)
-||+.|.-+--...|+-|.|..||+
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~~C~~ 36 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCEDCGM 36 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCC
T ss_pred CCcCCCCceeeccCCccCEeCCCCC
Confidence 3555553221123455666666553
No 163
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=20.97 E-value=21 Score=23.57 Aligned_cols=16 Identities=31% Similarity=0.912 Sum_probs=13.4
Q ss_pred cccccCCcccceeecC
Q 021794 124 QVCVNCGVCMGEYFCE 139 (307)
Q Consensus 124 ~~C~nCg~~f~~YfC~ 139 (307)
-.|..|...||+|.|-
T Consensus 16 gfcktckaefgkyicl 31 (41)
T 1bi6_H 16 GFCKTCKAEFGKYICL 31 (41)
T ss_dssp TTCSSEEEETTEEEEC
T ss_pred hHHHHHHHHhCceEEE
Confidence 4578899999999884
No 164
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.95 E-value=26 Score=26.86 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=15.4
Q ss_pred CCCCCccccCCCCcccccC
Q 021794 147 DTSKKQYHCDGCGICRIGG 165 (307)
Q Consensus 147 d~~k~~yHC~~CgiCR~G~ 165 (307)
++..++++|+.||-=-.||
T Consensus 40 r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 40 RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EEETTEEEETTTCCEEECC
T ss_pred ccCCCeEECCCCCCEecCC
Confidence 3456899999999887876
No 165
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.90 E-value=59 Score=22.50 Aligned_cols=41 Identities=22% Similarity=0.581 Sum_probs=26.7
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794 195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 246 (307)
Q Consensus 195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 246 (307)
...|+.|.+.+..... ++..=|..+|.+| ++|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR--KLEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC--EECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc--EEEECccccCccc---------CeECCCCCcCCC
Confidence 4568888887654222 2334578888765 568888887754
No 166
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.72 E-value=43 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=6.0
Q ss_pred CCCCCCCcccCc
Q 021794 235 YACPICSKSVCD 246 (307)
Q Consensus 235 ~~CPiCrks~~d 246 (307)
|.||+|.+.+..
T Consensus 43 ~~C~~C~~~f~~ 54 (72)
T 1x6e_A 43 YKCLECGKAFSQ 54 (72)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 445555555443
No 167
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=20.29 E-value=73 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.804 Sum_probs=9.2
Q ss_pred CCCCCCCCcccCchh
Q 021794 234 QYACPICSKSVCDMS 248 (307)
Q Consensus 234 ~~~CPiCrks~~dm~ 248 (307)
.|.|++|.+.+....
T Consensus 31 ~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 31 PFACDICGRKFARSD 45 (88)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CccCCCCCCccCCHH
Confidence 466777776666543
No 168
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.21 E-value=48 Score=25.28 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=6.1
Q ss_pred cceeeccCCCc
Q 021794 167 DNFFHCNKCRC 177 (307)
Q Consensus 167 ~~ffHC~~C~~ 177 (307)
.-+|+|..|+.
T Consensus 59 ~~~Y~C~~C~f 69 (89)
T 1v5n_A 59 IWSYHCDECDF 69 (89)
T ss_dssp SCEEECTTTCC
T ss_pred CcEEEcCCCCC
Confidence 34566666654
No 169
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.08 E-value=64 Score=25.24 Aligned_cols=32 Identities=28% Similarity=0.754 Sum_probs=24.1
Q ss_pred CCCCCCcccccccccCcceeEEcC---CCCcccHHHHHHH
Q 021794 193 AMHHDCPVCCEYLFETRQDVIVLP---CGHTIHKNCLKEM 229 (307)
Q Consensus 193 ~~~~~CPIClE~lf~s~~~v~~Lp---CGH~fH~~Cl~~w 229 (307)
..+..|+||-. +++. ..+| |+-.||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 35788999984 5533 2455 5899999999996
Done!