BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021795
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PCH8|SECB_XYLFA Protein-export protein SecB OS=Xylella fastidiosa (strain 9a5c)
           GN=secB PE=3 SV=2
          Length = 172

 Score = 32.3 bits (72), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 135 ILWGASKPYKP---------KIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRN 185
           I  GA+KP +          KI +K++ FE  N  A  +E+G P   L+LN  V+ L  N
Sbjct: 5   ITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNEN 64

Query: 186 PATFFAVHVTST 197
            A    +HVT T
Sbjct: 65  -AFELVLHVTLT 75


>sp|Q87CK2|SECB_XYLFT Protein-export protein SecB OS=Xylella fastidiosa (strain Temecula1
           / ATCC 700964) GN=secB PE=3 SV=1
          Length = 172

 Score = 32.0 bits (71), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 135 ILWGASKPYKP---------KIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRN 185
           I  GA+KP +          KI +K++ FE  N  A  +E+G P   L+LN  V+ L  N
Sbjct: 5   ITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNEN 64

Query: 186 PATFFAVHVTST 197
            A    +HVT T
Sbjct: 65  -AFELVLHVTLT 75


>sp|B0U2T9|SECB_XYLFM Protein-export protein SecB OS=Xylella fastidiosa (strain M12)
           GN=secB PE=3 SV=1
          Length = 172

 Score = 32.0 bits (71), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 135 ILWGASKPYKP---------KIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRN 185
           I  GA+KP +          KI +K++ FE  N  A  +E+G P   L+LN  V+ L  N
Sbjct: 5   ITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNEN 64

Query: 186 PATFFAVHVTST 197
            A    +HVT T
Sbjct: 65  -AFELVLHVTLT 75


>sp|B2I5B5|SECB_XYLF2 Protein-export protein SecB OS=Xylella fastidiosa (strain M23)
           GN=secB PE=3 SV=1
          Length = 172

 Score = 32.0 bits (71), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 135 ILWGASKPYKP---------KIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRN 185
           I  GA+KP +          KI +K++ FE  N  A  +E+G P   L+LN  V+ L  N
Sbjct: 5   ITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNEN 64

Query: 186 PATFFAVHVTST 197
            A    +HVT T
Sbjct: 65  -AFELVLHVTLT 75


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,241,930
Number of Sequences: 539616
Number of extensions: 5030351
Number of successful extensions: 14722
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14694
Number of HSP's gapped (non-prelim): 38
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)