Query 021795
Match_columns 307
No_of_seqs 157 out of 407
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 7.1E-30 1.5E-34 233.0 25.9 170 124-307 46-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 1.7E-12 3.6E-17 102.1 7.0 99 180-286 1-100 (101)
3 smart00769 WHy Water Stress an 97.6 0.00076 1.6E-08 54.1 9.6 60 172-232 12-72 (100)
4 PF07092 DUF1356: Protein of u 97.2 0.0065 1.4E-07 56.6 12.1 60 172-232 121-181 (238)
5 PF12751 Vac7: Vacuolar segreg 96.5 0.01 2.3E-07 58.7 8.0 53 144-208 328-380 (387)
6 COG5608 LEA14-like dessication 93.2 3.5 7.5E-05 36.4 13.1 58 176-234 51-109 (161)
7 TIGR02588 conserved hypothetic 81.9 2.7 5.9E-05 35.6 4.7 37 120-156 7-45 (122)
8 PLN03160 uncharacterized prote 75.5 66 0.0014 29.5 14.7 104 110-225 33-147 (219)
9 PF15145 DUF4577: Domain of un 72.4 2.9 6.2E-05 35.1 2.2 29 114-142 59-88 (128)
10 PF14812 PBP1_TM: Transmembran 64.9 0.44 9.6E-06 37.6 -3.8 6 118-123 67-72 (81)
11 PF05545 FixQ: Cbb3-type cytoc 60.7 2.7 5.9E-05 29.5 -0.1 22 123-144 13-34 (49)
12 COG1580 FliL Flagellar basal b 60.4 28 0.00061 30.7 6.2 17 125-141 27-43 (159)
13 PF08113 CoxIIa: Cytochrome c 54.1 4.8 0.0001 26.6 0.3 18 121-138 7-24 (34)
14 PHA03049 IMV membrane protein; 52.1 4.6 9.9E-05 30.7 -0.1 23 121-143 4-26 (68)
15 PF05961 Chordopox_A13L: Chord 51.2 4.6 9.9E-05 30.8 -0.2 25 120-144 3-27 (68)
16 KOG3950 Gamma/delta sarcoglyca 50.1 13 0.00028 35.3 2.5 21 173-193 104-126 (292)
17 PRK06531 yajC preprotein trans 49.7 5.4 0.00012 33.3 -0.0 12 135-146 15-26 (113)
18 PRK10893 lipopolysaccharide ex 49.6 84 0.0018 28.3 7.6 21 140-160 36-56 (192)
19 COG4736 CcoQ Cbb3-type cytochr 49.3 5.5 0.00012 29.7 -0.0 21 125-145 15-35 (60)
20 PF15012 DUF4519: Domain of un 47.7 18 0.00039 26.6 2.4 19 125-143 38-56 (56)
21 PHA02902 putative IMV membrane 46.0 4.4 9.5E-05 30.7 -1.0 23 121-143 5-27 (70)
22 PF14155 DUF4307: Domain of un 44.5 35 0.00077 28.1 4.1 27 132-161 18-45 (112)
23 KOG4753 Predicted membrane pro 40.1 61 0.0013 27.5 4.8 16 124-139 62-77 (124)
24 PF12505 DUF3712: Protein of u 40.1 72 0.0016 26.3 5.3 25 175-200 100-124 (125)
25 PF10907 DUF2749: Protein of u 38.2 41 0.00089 25.6 3.1 18 126-143 11-28 (66)
26 PRK05529 cell division protein 38.0 39 0.00084 31.7 3.7 58 144-202 58-135 (255)
27 cd01324 cbb3_Oxidase_CcoQ Cyto 37.8 12 0.00025 26.6 0.2 21 124-144 15-35 (48)
28 PF04790 Sarcoglycan_1: Sarcog 37.5 16 0.00034 34.8 1.0 17 173-189 84-100 (264)
29 COG5074 t-SNARE complex subuni 36.8 27 0.00059 33.0 2.4 24 115-138 251-274 (280)
30 PF06040 Adeno_E3: Adenovirus 35.0 57 0.0012 27.6 3.8 27 60-86 55-85 (127)
31 PF04478 Mid2: Mid2 like cell 33.7 30 0.00064 30.5 2.0 23 125-147 60-82 (154)
32 PF01102 Glycophorin_A: Glycop 32.5 12 0.00026 31.7 -0.5 39 113-151 61-101 (122)
33 PHA02831 EEV host range protei 32.1 51 0.0011 31.5 3.5 20 118-137 235-254 (268)
34 PF09624 DUF2393: Protein of u 31.9 1.1E+02 0.0023 26.0 5.2 71 132-219 33-105 (149)
35 PTZ00200 cysteine proteinase; 31.8 69 0.0015 32.8 4.6 24 118-141 45-69 (448)
36 PF06092 DUF943: Enterobacteri 31.7 24 0.00052 31.2 1.2 18 128-145 14-31 (157)
37 PF03100 CcmE: CcmE; InterPro 31.0 1.2E+02 0.0025 25.6 5.2 17 124-140 14-30 (131)
38 PHA02680 ORF090 IMV phosphoryl 29.9 28 0.0006 28.0 1.1 34 113-146 43-78 (91)
39 PF11837 DUF3357: Domain of un 29.9 17 0.00038 29.7 0.0 19 117-135 30-48 (106)
40 PF13473 Cupredoxin_1: Cupredo 29.8 49 0.0011 26.1 2.6 50 133-189 6-55 (104)
41 PF09677 TrbI_Ftype: Type-F co 29.6 25 0.00055 29.1 0.9 33 115-147 1-33 (111)
42 PHA02681 ORF089 virion membran 29.2 12 0.00027 29.8 -0.9 19 125-143 9-27 (92)
43 PF09911 DUF2140: Uncharacteri 28.6 69 0.0015 28.8 3.6 21 125-145 11-31 (187)
44 PF14283 DUF4366: Domain of un 26.7 65 0.0014 29.8 3.2 24 124-147 167-190 (218)
45 PF07787 DUF1625: Protein of u 26.5 45 0.00097 30.9 2.1 10 133-142 239-248 (248)
46 TIGR02744 TrbI_Ftype type-F co 26.1 47 0.001 27.8 1.9 26 124-149 11-36 (112)
47 PRK14094 psbM photosystem II r 25.6 75 0.0016 22.7 2.5 19 124-142 13-31 (50)
48 KOG0811 SNARE protein PEP12/VA 25.4 26 0.00057 33.5 0.3 17 125-141 252-268 (269)
49 COG1589 FtsQ Cell division sep 24.5 53 0.0011 30.8 2.2 32 125-156 38-69 (269)
50 PF12321 DUF3634: Protein of u 24.3 25 0.00054 29.2 -0.0 15 134-148 11-27 (108)
51 PRK05886 yajC preprotein trans 24.0 20 0.00042 29.9 -0.7 15 132-146 14-28 (109)
52 PRK13183 psbN photosystem II r 23.8 91 0.002 22.1 2.7 25 119-143 9-33 (46)
53 COG4698 Uncharacterized protei 23.2 41 0.00088 30.6 1.1 38 115-154 11-48 (197)
54 PF07172 GRP: Glycine rich pro 22.9 52 0.0011 26.5 1.6 8 128-135 12-19 (95)
55 COG5353 Uncharacterized protei 22.4 41 0.00089 29.7 0.9 21 124-144 15-35 (161)
56 PF06637 PV-1: PV-1 protein (P 22.3 52 0.0011 33.2 1.7 22 118-139 27-51 (442)
57 PHA02639 EEV host range protei 22.3 89 0.0019 30.2 3.3 21 118-138 261-281 (295)
58 PHA02898 virion envelope prote 22.1 40 0.00086 27.2 0.7 33 114-146 43-78 (92)
59 CHL00020 psbN photosystem II p 22.0 1.1E+02 0.0024 21.4 2.8 24 120-143 7-30 (43)
60 KOG3385 V-SNARE [Intracellular 21.9 80 0.0017 26.7 2.5 14 125-138 104-117 (118)
61 PF01034 Syndecan: Syndecan do 21.7 33 0.00071 26.0 0.1 19 125-143 19-37 (64)
62 PRK14762 membrane protein; Pro 21.6 90 0.0019 19.5 2.0 12 125-136 16-27 (27)
63 PF05808 Podoplanin: Podoplani 21.2 32 0.00069 30.6 0.0 36 108-143 121-156 (162)
64 PF15048 OSTbeta: Organic solu 21.2 89 0.0019 26.7 2.7 28 109-136 29-56 (125)
65 TIGR00845 caca sodium/calcium 21.2 37 0.00079 37.9 0.5 12 81-93 695-706 (928)
66 PF06835 LptC: Lipopolysacchar 20.8 3.3E+02 0.0072 22.6 6.3 10 146-155 34-43 (176)
67 PF13396 PLDc_N: Phospholipase 20.6 1.1E+02 0.0024 20.6 2.7 19 125-143 28-46 (46)
68 PF02468 PsbN: Photosystem II 20.6 74 0.0016 22.3 1.7 24 120-143 7-30 (43)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=233.04 Aligned_cols=170 Identities=11% Similarity=0.168 Sum_probs=137.2
Q ss_pred HHHHHHHHHheeeEEEeecCCcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCeEEEEEcCceEEEEE
Q 021795 124 FFVLLFTVFCLILWGASKPYKPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATFFAVHVTSTPLELHY 203 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP~~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y 203 (307)
++++|+++++.++|+++||+.|+|+|.+++|++|++..+. .+...++++++++|+++|||. +||+|++.++.++|
T Consensus 46 ~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y 120 (219)
T PLN03160 46 TLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYY 120 (219)
T ss_pred HHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEE
Confidence 3666677888889999999999999999999999996521 123345666777889999998 89999999999999
Q ss_pred ccEEeecccCCcceecCCCeeEEEEEEEeeeeeeCCCcchhhhhccCCCcceEEEEEEEEEEEEEEEEeEEEeeeEeEEE
Q 021795 204 FQLKLASGQMKKFSQSRKSQRNVVTVVQGYQVPLYGGVPVLASAKGHLDRAEVPLNLTFVMRSRAYILGRLVKSKFYRRI 283 (307)
Q Consensus 204 ~~~~lasg~lp~FyQ~~kstt~v~v~v~g~~vpLygag~~L~~~~~~~~~g~VpL~L~~~vr~R~kVlG~lv~~k~~~~V 283 (307)
+|+.||.+.+|+|||++++++.+.+.+.....-+.. +..|..+.. +|.+||+++++++.|++| |++.+++++.+|
T Consensus 121 ~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~---~G~v~l~~~~~v~gkVkv-~~i~k~~v~~~v 195 (219)
T PLN03160 121 GGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDIS---SGLLNMNSYTRIGGKVKI-LKIIKKHVVVKM 195 (219)
T ss_pred CCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhHHHHhh---CCeEEEEEEEEEEEEEEE-EEEEEEEEEEEE
Confidence 999999999999999999999988876543221211 455655543 789999999999999995 678899999999
Q ss_pred EEEEEEcCCCCCCCccc-cCCceeC
Q 021795 284 RCSVTLRGNKLGKPLNL-TNACFYQ 307 (307)
Q Consensus 284 ~C~l~v~~~~~~~~i~~-~~~C~~~ 307 (307)
+|+++|+.. ...+ ...|+++
T Consensus 196 ~C~v~V~~~----~~~i~~~~C~~~ 216 (219)
T PLN03160 196 NCTMTVNIT----SQAIQGQKCKRH 216 (219)
T ss_pred EeEEEEECC----CCEEeccEeccc
Confidence 999999853 2345 6789763
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.36 E-value=1.7e-12 Score=102.12 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=72.3
Q ss_pred EEEEecCCCeEEEEEcCceEEEEEccEEee-cccCCcceecCCCeeEEEEEEEeeeeeeCCCcchhhhhccCCCcceEEE
Q 021795 180 KILYRNPATFFAVHVTSTPLELHYFQLKLA-SGQMKKFSQSRKSQRNVVTVVQGYQVPLYGGVPVLASAKGHLDRAEVPL 258 (307)
Q Consensus 180 ~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~la-sg~lp~FyQ~~kstt~v~v~v~g~~vpLygag~~L~~~~~~~~~g~VpL 258 (307)
+|.++|||. |+|+|++.++.++|++..|| .+..++|+|++++++++.+.+..+...| +..+.+.. ++.+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~----~~~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL----AGRVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH----HTTSCE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh----ccccce
Confidence 578999999 99999999999999999999 7789999999999999999888776555 33443332 234567
Q ss_pred EEEEEEEEEEEEEeEEEeeeEeEEEEEE
Q 021795 259 NLTFVMRSRAYILGRLVKSKFYRRIRCS 286 (307)
Q Consensus 259 ~L~~~vr~R~kVlG~lv~~k~~~~V~C~ 286 (307)
++.++++.+++|+|.....+++..++|.
T Consensus 73 ~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 73 DVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 7777777788865444444455555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.56 E-value=0.00076 Score=54.09 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred eeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEeecccCC-cceecCCCeeEEEEEEEe
Q 021795 172 MLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQMK-KFSQSRKSQRNVVTVVQG 232 (307)
Q Consensus 172 ~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp-~FyQ~~kstt~v~v~v~g 232 (307)
.+...+.+++.+.|||. |.+.|+.....++|+|..||+|..+ ....+.++++.+.+.+.-
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 35667778899999997 6999999999999999999999984 799999999999888776
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.16 E-value=0.0065 Score=56.65 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=48.6
Q ss_pred eeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEeecccCCcc-eecCCCeeEEEEEEEe
Q 021795 172 MLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQMKKF-SQSRKSQRNVVTVVQG 232 (307)
Q Consensus 172 ~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp~F-yQ~~kstt~v~v~v~g 232 (307)
.+.+|++-.+.+.||| ++-|.+.+..+++.|....+|.+..... .-++++.+.+...+..
T Consensus 121 ~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 121 TVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 5788999899999999 8899999999999999999999877544 4466666666555444
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.46 E-value=0.01 Score=58.65 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=34.4
Q ss_pred CcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEe
Q 021795 144 KPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKL 208 (307)
Q Consensus 144 ~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~l 208 (307)
||=-.|+=+.|+|.-..+ +.|-+++ .|.+.||| .|.|.++..++.+|=.-.-+
T Consensus 328 KpL~~v~v~~I~NVlaS~---------qELmfdl--~V~A~NPn-~~~V~I~d~dldIFAKS~yv 380 (387)
T PF12751_consen 328 KPLTDVQVVSIQNVLASE---------QELMFDL--TVEAFNPN-WFTVTIDDMDLDIFAKSRYV 380 (387)
T ss_pred cccccceEEEeeeeeecc---------ceEEEee--EEEEECCC-eEEEEeccceeeeEecCCcc
Confidence 444455555555544432 2344554 78899999 58999999999998544333
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=93.17 E-value=3.5 Score=36.39 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=49.6
Q ss_pred EEEEEEEEecCCCeEEEEEcCceEEEEEccEEeecccC-CcceecCCCeeEEEEEEEeee
Q 021795 176 NSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQM-KKFSQSRKSQRNVVTVVQGYQ 234 (307)
Q Consensus 176 n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~l-p~FyQ~~kstt~v~v~v~g~~ 234 (307)
.+-.++.++|||. |-|-+......++-+++.+|.|.. ..+--++++..++.+.+.-+.
T Consensus 51 EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~ 109 (161)
T COG5608 51 EIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDN 109 (161)
T ss_pred EEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEeh
Confidence 4455788999997 699999999999999999999976 669999999999998877653
No 7
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=81.91 E-value=2.7 Score=35.61 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHheee--EEEeecCCcEEEEEeEEEEe
Q 021795 120 CIGFFFVLLFTVFCLIL--WGASKPYKPKIIVKNIVFEN 156 (307)
Q Consensus 120 ~~~~~~vll~gv~~LIl--Wlv~RP~~P~f~V~s~~v~~ 156 (307)
.+.+.+++|++++.||+ |+.-++++|.+.+.......
T Consensus 7 t~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r 45 (122)
T TIGR02588 7 TFGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER 45 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence 34445666677777766 56667789999877655543
No 8
>PLN03160 uncharacterized protein; Provisional
Probab=75.50 E-value=66 Score=29.51 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCCceeeh--hhHHHHHHHHHHHHHheeeEEEeec--CCcEEEEEeEEEEeEE-ecCCCCCCCCCcceeEEEEEE-----
Q 021795 110 GSGRNVRL--YVCIGFFFVLLFTVFCLILWGASKP--YKPKIIVKNIVFENFN-VQAGSDESGVPTDMLSLNSTV----- 179 (307)
Q Consensus 110 ~~~~~rrc--~~~~~~~~vll~gv~~LIlWlv~RP--~~P~f~V~s~~v~~f~-v~~g~d~sgvpt~~lt~n~tv----- 179 (307)
++.+.+|| ++.++++++++++++++.++=.-+| +--.++|+.+.+..-. ..... +..|.++.++
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~------n~tl~~~v~v~NPN~ 106 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGT------NITLIADVSVKNPNV 106 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeE------EEEEEEEEEEECCCc
Confidence 44466666 4455666555555555555545777 4556677776664300 00000 0122332222
Q ss_pred -EEEEecCCCeEEEEEcCceEEEEEccEEeecccCCcceecCCCeeE
Q 021795 180 -KILYRNPATFFAVHVTSTPLELHYFQLKLASGQMKKFSQSRKSQRN 225 (307)
Q Consensus 180 -~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp~FyQ~~kstt~ 225 (307)
.+.+.| .-..++|....+ +...+..|..+++.+.+.+.+.
T Consensus 107 ~~~~Y~~--~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 107 ASFKYSN--TTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred eeEEEcC--eEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEE
Confidence 244443 336778877554 3455667777778887777775
No 9
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=72.41 E-value=2.9 Score=35.07 Aligned_cols=29 Identities=3% Similarity=0.191 Sum_probs=21.6
Q ss_pred eeehhhHHHHH-HHHHHHHHheeeEEEeec
Q 021795 114 NVRLYVCIGFF-FVLLFTVFCLILWGASKP 142 (307)
Q Consensus 114 ~rrc~~~~~~~-~vll~gv~~LIlWlv~RP 142 (307)
.|+.+|+++++ +++-++++.|+++|+.+-
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 45556777775 888888888999988764
No 10
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=64.89 E-value=0.44 Score=37.58 Aligned_cols=6 Identities=0% Similarity=0.240 Sum_probs=0.8
Q ss_pred hhHHHH
Q 021795 118 YVCIGF 123 (307)
Q Consensus 118 ~~~~~~ 123 (307)
+|++||
T Consensus 67 wlwLli 72 (81)
T PF14812_consen 67 WLWLLI 72 (81)
T ss_dssp ----TT
T ss_pred hHHHHH
Confidence 343333
No 11
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=60.66 E-value=2.7 Score=29.48 Aligned_cols=22 Identities=32% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHHHHHHHHheeeEEEeecCC
Q 021795 123 FFFVLLFTVFCLILWGASKPYK 144 (307)
Q Consensus 123 ~~~vll~gv~~LIlWlv~RP~~ 144 (307)
+.++++++++++|+|.+++|++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 3466677777788888888874
No 12
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=60.39 E-value=28 Score=30.68 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=11.3
Q ss_pred HHHHHHHHheeeEEEee
Q 021795 125 FVLLFTVFCLILWGASK 141 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~R 141 (307)
++++++.++.++|+..+
T Consensus 27 vl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 27 VLLALAGAGYFFWFGSK 43 (159)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 55566666777787753
No 13
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=54.09 E-value=4.8 Score=26.62 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHheeeEE
Q 021795 121 IGFFFVLLFTVFCLILWG 138 (307)
Q Consensus 121 ~~~~~vll~gv~~LIlWl 138 (307)
+.++.+.++++++||+|+
T Consensus 7 Gal~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 7 GALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHHHHH
Confidence 344455566667777774
No 14
>PHA03049 IMV membrane protein; Provisional
Probab=52.14 E-value=4.6 Score=30.74 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHheeeEEEeecC
Q 021795 121 IGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 121 ~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
-++++++.+++++||+|++++-+
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557788889999999998754
No 15
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=51.23 E-value=4.6 Score=30.82 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHheeeEEEeecCC
Q 021795 120 CIGFFFVLLFTVFCLILWGASKPYK 144 (307)
Q Consensus 120 ~~~~~~vll~gv~~LIlWlv~RP~~ 144 (307)
.-|+++++.+++++||+|++++-++
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455677888889999999987543
No 16
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=50.15 E-value=13 Score=35.32 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=14.3
Q ss_pred eEEEE--EEEEEEecCCCeEEEE
Q 021795 173 LSLNS--TVKILYRNPATFFAVH 193 (307)
Q Consensus 173 lt~n~--tv~vt~rNPN~~fGI~ 193 (307)
|++.. .|++++||||..+.=+
T Consensus 104 l~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred eEEEeccCeeEEccCCCCceeee
Confidence 44443 4788899999876543
No 17
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=49.73 E-value=5.4 Score=33.34 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=8.3
Q ss_pred eeEEEeecCCcE
Q 021795 135 ILWGASKPYKPK 146 (307)
Q Consensus 135 IlWlv~RP~~P~ 146 (307)
++|+.+||++=+
T Consensus 15 i~yf~iRPQkKr 26 (113)
T PRK06531 15 LIFFMQRQQKKQ 26 (113)
T ss_pred HHHheechHHHH
Confidence 346679997654
No 18
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=49.55 E-value=84 Score=28.31 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=17.7
Q ss_pred eecCCcEEEEEeEEEEeEEec
Q 021795 140 SKPYKPKIIVKNIVFENFNVQ 160 (307)
Q Consensus 140 ~RP~~P~f~V~s~~v~~f~v~ 160 (307)
..++.|.|.+++++...|+.+
T Consensus 36 ~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 36 VNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCCEEEeccEEEEECCC
Confidence 357889999999999998774
No 19
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.31 E-value=5.5 Score=29.73 Aligned_cols=21 Identities=19% Similarity=0.274 Sum_probs=15.5
Q ss_pred HHHHHHHHheeeEEEeecCCc
Q 021795 125 FVLLFTVFCLILWGASKPYKP 145 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~~P 145 (307)
++.++.++..++|.++||++=
T Consensus 15 t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHhcccch
Confidence 555556677888999999763
No 20
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=47.69 E-value=18 Score=26.65 Aligned_cols=19 Identities=11% Similarity=0.411 Sum_probs=14.4
Q ss_pred HHHHHHHHheeeEEEeecC
Q 021795 125 FVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~ 143 (307)
+++++.++++++|+..||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 5555556778999999995
No 21
>PHA02902 putative IMV membrane protein; Provisional
Probab=46.04 E-value=4.4 Score=30.73 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHheeeEEEeecC
Q 021795 121 IGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 121 ~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
.|+++++++.++||++|.++|-.
T Consensus 5 tfvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 5 TFVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777788999999999865
No 22
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=44.49 E-value=35 Score=28.11 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=13.7
Q ss_pred HheeeEEEee-cCCcEEEEEeEEEEeEEecC
Q 021795 132 FCLILWGASK-PYKPKIIVKNIVFENFNVQA 161 (307)
Q Consensus 132 ~~LIlWlv~R-P~~P~f~V~s~~v~~f~v~~ 161 (307)
++++.|+.++ ...|.++-+ ...|.+.+
T Consensus 18 ~~~~~w~~~~~~~~~~v~~~---~~gf~vv~ 45 (112)
T PF14155_consen 18 GAVVAWFGYSQFGSPPVSAE---VIGFEVVD 45 (112)
T ss_pred HHHHhHhhhhhccCCCceEE---EEEEEECC
Confidence 3445555555 455666444 44455543
No 23
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=40.13 E-value=61 Score=27.51 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=9.8
Q ss_pred HHHHHHHHHheeeEEE
Q 021795 124 FFVLLFTVFCLILWGA 139 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv 139 (307)
+|++++|++.+.-++.
T Consensus 62 ~Lli~lg~fl~~~~~~ 77 (124)
T KOG4753|consen 62 LLLIGLGFFLAGGRVE 77 (124)
T ss_pred HHHHHHHHHheeccee
Confidence 4666777776655543
No 24
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=40.09 E-value=72 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=16.7
Q ss_pred EEEEEEEEEecCCCeEEEEEcCceEE
Q 021795 175 LNSTVKILYRNPATFFAVHVTSTPLE 200 (307)
Q Consensus 175 ~n~tv~vt~rNPN~~fGI~Y~s~~v~ 200 (307)
+|+..++++.||.. ++|......+.
T Consensus 100 ~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 45566788899986 57766555443
No 25
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=38.18 E-value=41 Score=25.58 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=13.9
Q ss_pred HHHHHHHheeeEEEeecC
Q 021795 126 VLLFTVFCLILWGASKPY 143 (307)
Q Consensus 126 vll~gv~~LIlWlv~RP~ 143 (307)
+++.+.+..+.|++.+|+
T Consensus 11 ~avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 11 VAVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHHhhhceeEEEEECCC
Confidence 335556788999999998
No 26
>PRK05529 cell division protein FtsQ; Provisional
Probab=38.02 E-value=39 Score=31.69 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=31.3
Q ss_pred CcEEEEEeEEEEeEEecCCCC---CCC--CCcceeEEE--------------EEEEEEEecCCCeEEEEEcC-ceEEEE
Q 021795 144 KPKIIVKNIVFENFNVQAGSD---ESG--VPTDMLSLN--------------STVKILYRNPATFFAVHVTS-TPLELH 202 (307)
Q Consensus 144 ~P~f~V~s~~v~~f~v~~g~d---~sg--vpt~~lt~n--------------~tv~vt~rNPN~~fGI~Y~s-~~v~l~ 202 (307)
.|-|.|+.+.|+.-...+..+ ..+ ..+.++.++ -+++++-+.||+ +-|++.+ .++...
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~Er~pvA~~ 135 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVERVPLAFI 135 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEEeeeEEEE
Confidence 599999999998532210000 000 011222332 246788899997 5677754 444444
No 27
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=37.81 E-value=12 Score=26.55 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=14.5
Q ss_pred HHHHHHHHHheeeEEEeecCC
Q 021795 124 FFVLLFTVFCLILWGASKPYK 144 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP~~ 144 (307)
+++.++++|+.|+|.+++|+.
T Consensus 15 ~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 15 GLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 355566677777777888854
No 28
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=37.52 E-value=16 Score=34.82 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=11.5
Q ss_pred eEEEEEEEEEEecCCCe
Q 021795 173 LSLNSTVKILYRNPATF 189 (307)
Q Consensus 173 lt~n~tv~vt~rNPN~~ 189 (307)
++.+-.|.+.+||.|..
T Consensus 84 i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 84 IQSSRNVTLNARNENGS 100 (264)
T ss_pred EEecCceEEEEecCCCc
Confidence 44444577888888875
No 29
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=36.81 E-value=27 Score=33.01 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=13.9
Q ss_pred eehhhHHHHHHHHHHHHHheeeEE
Q 021795 115 VRLYVCIGFFFVLLFTVFCLILWG 138 (307)
Q Consensus 115 rrc~~~~~~~~vll~gv~~LIlWl 138 (307)
++|+.+||+++++++.++|-++..
T Consensus 251 i~c~gI~~iii~viv~vv~~v~~~ 274 (280)
T COG5074 251 IRCYGICFIIIIVIVVVVFKVVPF 274 (280)
T ss_pred eehhhhHHHHHHHHHHHHhcccch
Confidence 567666666655555555444443
No 30
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=35.04 E-value=57 Score=27.58 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=17.4
Q ss_pred CCccccc---cccc-cccccccCCCCCcccc
Q 021795 60 PIHHSRE---SSTS-RFSASLKNPRGVSAWR 86 (307)
Q Consensus 60 ~~~hsr~---ss~~-r~s~~~~~~~~~~~w~ 86 (307)
+.||+|. +.+. |+-|.|++.....+|.
T Consensus 55 ~~R~~R~l~~tNtt~~tGGELr~~pte~p~e 85 (127)
T PF06040_consen 55 QHRHSRSLSDTNTTTKTGGELRGPPTESPWE 85 (127)
T ss_pred hhhhcccccccCCccccCceEeCCCCCCCee
Confidence 3578885 3334 7878877766556674
No 31
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.69 E-value=30 Score=30.54 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=16.9
Q ss_pred HHHHHHHHheeeEEEeecCCcEE
Q 021795 125 FVLLFTVFCLILWGASKPYKPKI 147 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~~P~f 147 (307)
..||+++++||+|+..|+++=.|
T Consensus 60 g~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 60 GPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHHhheeEEEecccCcc
Confidence 34455678888999999988553
No 32
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.54 E-value=12 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.040 Sum_probs=16.7
Q ss_pred ceeehhhHHHHH-HHHHHHHHheeeEEEeec-CCcEEEEEe
Q 021795 113 RNVRLYVCIGFF-FVLLFTVFCLILWGASKP-YKPKIIVKN 151 (307)
Q Consensus 113 ~~rrc~~~~~~~-~vll~gv~~LIlWlv~RP-~~P~f~V~s 151 (307)
++.-.+++++++ .+-++|+++||+|++.|= +++...++.
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 333334444443 445566677888888765 566565555
No 33
>PHA02831 EEV host range protein; Provisional
Probab=32.07 E-value=51 Score=31.49 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHheeeE
Q 021795 118 YVCIGFFFVLLFTVFCLILW 137 (307)
Q Consensus 118 ~~~~~~~~vll~gv~~LIlW 137 (307)
+++.++.|++++|+++|++=
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~ 254 (268)
T PHA02831 235 ILLSIICFIFVLGLIALFLS 254 (268)
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 45555568888888877653
No 34
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=31.85 E-value=1.1e+02 Score=25.95 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=37.6
Q ss_pred HheeeEEEee--cCCcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEee
Q 021795 132 FCLILWGASK--PYKPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLA 209 (307)
Q Consensus 132 ~~LIlWlv~R--P~~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~la 209 (307)
+.+++|.++. =++++.++.+..- +..++ ...+..+++|-+++ .+..=...+.+...+...+
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~~~--------------~~~v~g~V~N~g~~-~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQYSE--------------SFYVDGTVTNTGKF-TIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eeecc--------------EEEEEEEEEECCCC-EeeEEEEEEEEEeCCCccC
Confidence 3444444444 4666666555433 33322 12346778888763 5555556666666655555
Q ss_pred cccCCcceec
Q 021795 210 SGQMKKFSQS 219 (307)
Q Consensus 210 sg~lp~FyQ~ 219 (307)
+....-++|.
T Consensus 96 n~~~~~~~~~ 105 (149)
T PF09624_consen 96 NKFKEIFYQQ 105 (149)
T ss_pred chhhhhhccc
Confidence 5444444443
No 35
>PTZ00200 cysteine proteinase; Provisional
Probab=31.76 E-value=69 Score=32.78 Aligned_cols=24 Identities=13% Similarity=-0.101 Sum_probs=14.7
Q ss_pred hhHHHHH-HHHHHHHHheeeEEEee
Q 021795 118 YVCIGFF-FVLLFTVFCLILWGASK 141 (307)
Q Consensus 118 ~~~~~~~-~vll~gv~~LIlWlv~R 141 (307)
++++++. ++|++++..++.+++.|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (448)
T PTZ00200 45 IIISFLVFLFLAIGGSIVSYVLVSK 69 (448)
T ss_pred ehHHHHHHHHHHHHhheEEEEEEEe
Confidence 3344443 55555666688888888
No 36
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=31.71 E-value=24 Score=31.19 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=12.1
Q ss_pred HHHHHheeeEEEeecCCc
Q 021795 128 LFTVFCLILWGASKPYKP 145 (307)
Q Consensus 128 l~gv~~LIlWlv~RP~~P 145 (307)
|+++++.++|+.+||-.-
T Consensus 14 l~~~~~y~~W~~~rpV~I 31 (157)
T PF06092_consen 14 LLACILYFLWLTLRPVEI 31 (157)
T ss_pred HHHHHHHhhhhccCCeEE
Confidence 333344889999999543
No 37
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=30.98 E-value=1.2e+02 Score=25.55 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHheeeEEEe
Q 021795 124 FFVLLFTVFCLILWGAS 140 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~ 140 (307)
+++++++++.|++|.+.
T Consensus 14 ~~~~i~~~~~l~~~~~~ 30 (131)
T PF03100_consen 14 GLVIIAAAIYLILYSFS 30 (131)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35555556666666653
No 38
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.87 E-value=28 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=26.2
Q ss_pred ceeeh-hhHHHHH-HHHHHHHHheeeEEEeecCCcE
Q 021795 113 RNVRL-YVCIGFF-FVLLFTVFCLILWGASKPYKPK 146 (307)
Q Consensus 113 ~~rrc-~~~~~~~-~vll~gv~~LIlWlv~RP~~P~ 146 (307)
-.||. .+.+|++ .++++|++.+-.|.-.+|.+|.
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 35665 5666764 9999999999999988877765
No 39
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=29.86 E-value=17 Score=29.68 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhee
Q 021795 117 LYVCIGFFFVLLFTVFCLI 135 (307)
Q Consensus 117 c~~~~~~~~vll~gv~~LI 135 (307)
|++++|..+++|+.+++||
T Consensus 30 ~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 30 CLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555577777777777
No 40
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.79 E-value=49 Score=26.13 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=10.6
Q ss_pred heeeEEEeecCCcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCe
Q 021795 133 CLILWGASKPYKPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATF 189 (307)
Q Consensus 133 ~LIlWlv~RP~~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~ 189 (307)
++.+|+........-..-.++++++.+... +-.+..+-.++++++|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~v~I~~~~~~f~P~-------~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 6 AAALALSSSASAAAAQTVTITVTDFGFSPS-------TITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp ------------------------EEEES--------EEEEETTCEEEEEEEE-SSS
T ss_pred cccccccccccccccccccccccCCeEecC-------EEEEcCCCeEEEEEEECCCC
Confidence 344444444444444444455555555431 11122222456777777653
No 41
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=29.58 E-value=25 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=17.1
Q ss_pred eehhhHHHHHHHHHHHHHheeeEEEeecCCcEE
Q 021795 115 VRLYVCIGFFFVLLFTVFCLILWGASKPYKPKI 147 (307)
Q Consensus 115 rrc~~~~~~~~vll~gv~~LIlWlv~RP~~P~f 147 (307)
|+|+..+.++++.++.+-+.|.|++.++..|.+
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~vt~~l~~~~~p~i 33 (111)
T PF09677_consen 1 RRRWLVIVLLAVAALLLSAWVTWLLASQPQPRI 33 (111)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 455444444333333344556666677667753
No 42
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=29.20 E-value=12 Score=29.75 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=15.0
Q ss_pred HHHHHHHHheeeEEEeecC
Q 021795 125 FVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~ 143 (307)
+++++.|+|||+|.++|-.
T Consensus 9 ~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 9 TVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4667778999999988854
No 43
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=28.59 E-value=69 Score=28.77 Aligned_cols=21 Identities=14% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHHHHHHHheeeEEEeecCCc
Q 021795 125 FVLLFTVFCLILWGASKPYKP 145 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~~P 145 (307)
+.+++++++.++..+++|..|
T Consensus 11 la~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 11 LALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHhheeeEEEccCCC
Confidence 555666777888888999876
No 44
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.71 E-value=65 Score=29.82 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=14.6
Q ss_pred HHHHHHHHHheeeEEEeecCCcEE
Q 021795 124 FFVLLFTVFCLILWGASKPYKPKI 147 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP~~P~f 147 (307)
++|+|+|..++.+|-+.||+....
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHhhcceEEEEEEeccccccc
Confidence 444455555666666778876654
No 45
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=26.46 E-value=45 Score=30.94 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=6.3
Q ss_pred heeeEEEeec
Q 021795 133 CLILWGASKP 142 (307)
Q Consensus 133 ~LIlWlv~RP 142 (307)
+.+-|+.+||
T Consensus 239 Ia~aW~~yRP 248 (248)
T PF07787_consen 239 IALAWLFYRP 248 (248)
T ss_pred HHHhheeeCc
Confidence 3345777776
No 46
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=26.09 E-value=47 Score=27.79 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=18.7
Q ss_pred HHHHHHHHHheeeEEEeecCCcEEEE
Q 021795 124 FFVLLFTVFCLILWGASKPYKPKIIV 149 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP~~P~f~V 149 (307)
+++.++.+.++++|++.|=..|.+.+
T Consensus 11 ~~~~~~~l~~~~s~~v~~~~~P~iV~ 36 (112)
T TIGR02744 11 GCLAMVVLSALVSYGIVRLNSPVTVA 36 (112)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCeEEE
Confidence 35555566778999999977777553
No 47
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=25.56 E-value=75 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=13.7
Q ss_pred HHHHHHHHHheeeEEEeec
Q 021795 124 FFVLLFTVFCLILWGASKP 142 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP 142 (307)
+||++=.+|.+|+|.-...
T Consensus 13 LFi~iPT~FLlilYVkT~s 31 (50)
T PRK14094 13 LFVGVPTIFLIGLFISTQD 31 (50)
T ss_pred HHHHHHHHHhhheeEEecc
Confidence 3777778888898875443
No 48
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=26 Score=33.51 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=9.4
Q ss_pred HHHHHHHHheeeEEEee
Q 021795 125 FVLLFTVFCLILWGASK 141 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~R 141 (307)
++++..++++|+|+..+
T Consensus 252 ~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 252 GGPVGLIIGLIIAGIAA 268 (269)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33333356677777654
No 49
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=24.55 E-value=53 Score=30.84 Aligned_cols=32 Identities=13% Similarity=0.371 Sum_probs=27.2
Q ss_pred HHHHHHHHheeeEEEeecCCcEEEEEeEEEEe
Q 021795 125 FVLLFTVFCLILWGASKPYKPKIIVKNIVFEN 156 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~~P~f~V~s~~v~~ 156 (307)
+++++++.++++|...-+..|.|.++.+.|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 55566667788999999999999999999985
No 50
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=24.32 E-value=25 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=7.8
Q ss_pred eeeEEEeecCC--cEEE
Q 021795 134 LILWGASKPYK--PKII 148 (307)
Q Consensus 134 LIlWlv~RP~~--P~f~ 148 (307)
||+||++-=+. |-|.
T Consensus 11 li~~Lv~~~r~~~~vf~ 27 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFE 27 (108)
T ss_pred HHHHHHHccccCceEEE
Confidence 66666644432 5444
No 51
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.95 E-value=20 Score=29.85 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=8.9
Q ss_pred HheeeEEEeecCCcE
Q 021795 132 FCLILWGASKPYKPK 146 (307)
Q Consensus 132 ~~LIlWlv~RP~~P~ 146 (307)
++++.|+..||++=+
T Consensus 14 ~~i~yF~~iRPQkKr 28 (109)
T PRK05886 14 MGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHccHHHHH
Confidence 333445667997654
No 52
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=23.82 E-value=91 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.087 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHheeeEEEeecC
Q 021795 119 VCIGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 119 ~~~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
++++++..+|+++...-+|.++-|.
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCCc
Confidence 3444457778889999999998874
No 53
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=41 Score=30.59 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=22.9
Q ss_pred eehhhHHHHHHHHHHHHHheeeEEEeecCCcEEEEEeEEE
Q 021795 115 VRLYVCIGFFFVLLFTVFCLILWGASKPYKPKIIVKNIVF 154 (307)
Q Consensus 115 rrc~~~~~~~~vll~gv~~LIlWlv~RP~~P~f~V~s~~v 154 (307)
|.++|+++++|. +.++++|.-.++.|+.|...+.++.=
T Consensus 11 WKw~f~iLLAln--~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 11 WKWLFFILLALN--TLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHH--HHHHHHhheeeccCCCCCchhhccCc
Confidence 554444444333 33346667778899997777766544
No 54
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.88 E-value=52 Score=26.54 Aligned_cols=8 Identities=38% Similarity=0.633 Sum_probs=2.9
Q ss_pred HHHHHhee
Q 021795 128 LFTVFCLI 135 (307)
Q Consensus 128 l~gv~~LI 135 (307)
+|++++||
T Consensus 12 ~LA~lLli 19 (95)
T PF07172_consen 12 LLAALLLI 19 (95)
T ss_pred HHHHHHHH
Confidence 33333333
No 55
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.39 E-value=41 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.803 Sum_probs=17.1
Q ss_pred HHHHHHHHHheeeEEEeecCC
Q 021795 124 FFVLLFTVFCLILWGASKPYK 144 (307)
Q Consensus 124 ~~vll~gv~~LIlWlv~RP~~ 144 (307)
+|+++.+.+++++|.+..|..
T Consensus 15 iflai~~s~~~~~~~s~~P~~ 35 (161)
T COG5353 15 IFLAIILSIALFFWKSMKPYH 35 (161)
T ss_pred HHHHHHHHHHHHHhHhcCccc
Confidence 477777888999999998853
No 56
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.28 E-value=52 Score=33.17 Aligned_cols=22 Identities=14% Similarity=0.522 Sum_probs=14.8
Q ss_pred hhHHHHH---HHHHHHHHheeeEEE
Q 021795 118 YVCIGFF---FVLLFTVFCLILWGA 139 (307)
Q Consensus 118 ~~~~~~~---~vll~gv~~LIlWlv 139 (307)
||+.|+. |+||+|++.|++|+=
T Consensus 27 yfFlF~SLIQ~LIIlgLVLFmVYGn 51 (442)
T PF06637_consen 27 YFFLFVSLIQFLIILGLVLFMVYGN 51 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4555552 778888887777763
No 57
>PHA02639 EEV host range protein; Provisional
Probab=22.27 E-value=89 Score=30.16 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHheeeEE
Q 021795 118 YVCIGFFFVLLFTVFCLILWG 138 (307)
Q Consensus 118 ~~~~~~~~vll~gv~~LIlWl 138 (307)
.++.+++|++++|+++|++=-
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~ 281 (295)
T PHA02639 261 ILLSIISFMFILGVLSLLCSC 281 (295)
T ss_pred HHHHHHHHHHHHHHHHHeeec
Confidence 344444577777877776543
No 58
>PHA02898 virion envelope protein; Provisional
Probab=22.07 E-value=40 Score=27.17 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=24.8
Q ss_pred eeeh-hhHHHHH-HHHHHHHHheeeEE-EeecCCcE
Q 021795 114 NVRL-YVCIGFF-FVLLFTVFCLILWG-ASKPYKPK 146 (307)
Q Consensus 114 ~rrc-~~~~~~~-~vll~gv~~LIlWl-v~RP~~P~ 146 (307)
.||. .+.+|++ .++++|++.+-.|. -..|.+|.
T Consensus 43 ~wRalSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 43 ALRSISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 4555 5666775 89999999999998 66776664
No 59
>CHL00020 psbN photosystem II protein N
Probab=22.00 E-value=1.1e+02 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHheeeEEEeecC
Q 021795 120 CIGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 120 ~~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
+++++..+|+++...-+|.++-|.
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCCc
Confidence 344457778889999999998874
No 60
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=80 Score=26.66 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=7.4
Q ss_pred HHHHHHHHheeeEE
Q 021795 125 FVLLFTVFCLILWG 138 (307)
Q Consensus 125 ~vll~gv~~LIlWl 138 (307)
+++++++|++++|+
T Consensus 104 ~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 104 VFSLVAFFILWVWL 117 (118)
T ss_pred HHHHHHHHHhheee
Confidence 44455555555554
No 61
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=21.66 E-value=33 Score=26.01 Aligned_cols=19 Identities=26% Similarity=0.168 Sum_probs=0.4
Q ss_pred HHHHHHHHheeeEEEeecC
Q 021795 125 FVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~ 143 (307)
++.++.+++||+++++|=+
T Consensus 19 Vvgll~ailLIlf~iyR~r 37 (64)
T PF01034_consen 19 VVGLLFAILLILFLIYRMR 37 (64)
T ss_dssp ------------------S
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556678888888854
No 62
>PRK14762 membrane protein; Provisional
Probab=21.58 E-value=90 Score=19.49 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=7.7
Q ss_pred HHHHHHHHheee
Q 021795 125 FVLLFTVFCLIL 136 (307)
Q Consensus 125 ~vll~gv~~LIl 136 (307)
+++++|++-+|+
T Consensus 16 llvvtgvfklif 27 (27)
T PRK14762 16 LLVVTGVFKMIF 27 (27)
T ss_pred HHHHHHHHHhhC
Confidence 666777766553
No 63
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=21.24 E-value=32 Score=30.61 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCCCceeehhhHHHHHHHHHHHHHheeeEEEeecC
Q 021795 108 DEGSGRNVRLYVCIGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 108 ~~~~~~~rrc~~~~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
+++.||..--++-+++..++.+||++.|+.+++|=.
T Consensus 121 ~ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 121 VEKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp ------------------------------------
T ss_pred cccCCcceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 345667766544444457777788888888877743
No 64
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.20 E-value=89 Score=26.68 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=19.0
Q ss_pred CCCCceeehhhHHHHHHHHHHHHHheee
Q 021795 109 EGSGRNVRLYVCIGFFFVLLFTVFCLIL 136 (307)
Q Consensus 109 ~~~~~~rrc~~~~~~~~vll~gv~~LIl 136 (307)
.++.-+|.+-++++.++++++|++.|..
T Consensus 29 ~ED~tpWNysiL~Ls~vvlvi~~~LLgr 56 (125)
T PF15048_consen 29 VEDATPWNYSILALSFVVLVISFFLLGR 56 (125)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3445678876666667777888776643
No 65
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=21.19 E-value=37 Score=37.88 Aligned_cols=12 Identities=33% Similarity=0.770 Sum_probs=7.7
Q ss_pred CCccccccccCCC
Q 021795 81 GVSAWRHVQLDHK 93 (307)
Q Consensus 81 ~~~~w~~~~~~~~ 93 (307)
+...|+| |-.|+
T Consensus 695 gt~~w~~-qf~~a 706 (928)
T TIGR00845 695 GTHSWRE-QFIEA 706 (928)
T ss_pred ccchHHH-Hhhhe
Confidence 4577997 54444
No 66
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=20.85 E-value=3.3e+02 Score=22.59 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=0.0
Q ss_pred EEEEEeEEEE
Q 021795 146 KIIVKNIVFE 155 (307)
Q Consensus 146 ~f~V~s~~v~ 155 (307)
.+.++++++.
T Consensus 34 ~~~~~~~~~~ 43 (176)
T PF06835_consen 34 DYSIENFTLT 43 (176)
T ss_dssp ----------
T ss_pred cEEEEeeEEE
Confidence 3333343333
No 67
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.62 E-value=1.1e+02 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=13.7
Q ss_pred HHHHHHHHheeeEEEeecC
Q 021795 125 FVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 125 ~vll~gv~~LIlWlv~RP~ 143 (307)
+++++-++..++|++++++
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 4445777888889888764
No 68
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.60 E-value=74 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHheeeEEEeecC
Q 021795 120 CIGFFFVLLFTVFCLILWGASKPY 143 (307)
Q Consensus 120 ~~~~~~vll~gv~~LIlWlv~RP~ 143 (307)
+++++.++|+++...-+|.++-|.
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCCC
Confidence 444456677888888899998764
Done!