Query 021795
Match_columns 307
No_of_seqs 157 out of 407
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 97.8 9.4E-05 3.2E-09 64.6 9.4 112 143-274 43-155 (174)
2 1xo8_A AT1G01470; structural g 96.8 0.00028 9.7E-09 59.9 1.0 105 143-267 20-125 (151)
3 3but_A Uncharacterized protein 96.2 0.029 1E-06 46.8 9.6 63 174-237 17-80 (136)
4 2k1a_A Integrin alpha-IIB; sin 57.8 3.2 0.00011 27.8 0.9 32 113-144 8-41 (42)
5 2knc_B Integrin beta-3; transm 47.6 6.1 0.00021 29.8 1.1 21 118-138 13-33 (79)
6 2knc_A Integrin alpha-IIB; tra 46.1 4.7 0.00016 28.5 0.2 33 113-145 10-44 (54)
7 2lot_A Apelin receptor; membra 41.9 1.4 5E-05 32.1 -3.1 18 124-141 36-55 (64)
8 2k9j_B Integrin beta-3; transm 37.6 11 0.00039 25.1 1.1 20 119-138 13-32 (43)
9 3vmt_A Monofunctional glycosyl 33.3 17 0.00057 33.4 1.8 8 53-60 5-12 (263)
10 2l8s_A Integrin alpha-1; trans 32.8 9.9 0.00034 26.8 0.2 28 118-145 12-41 (54)
11 1nwd_B GAD, glutamate decarbox 27.1 9.6 0.00033 22.8 -0.6 9 2-10 3-11 (28)
12 3s8f_C Cytochrome C oxidase po 25.2 17 0.00059 23.2 0.3 16 123-138 9-24 (34)
13 3d8m_A BPP, baseplate protein, 24.5 83 0.0028 26.8 4.5 52 169-222 63-118 (165)
14 2lki_A Putative uncharacterize 22.7 18 0.00062 28.0 0.0 17 52-68 4-20 (105)
15 2l6w_A Beta-type platelet-deri 23.6 25 0.00086 23.1 0.0 17 131-147 22-38 (39)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.78 E-value=9.4e-05 Score=64.60 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEeecccCCc-ceecCC
Q 021795 143 YKPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQMKK-FSQSRK 221 (307)
Q Consensus 143 ~~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp~-FyQ~~k 221 (307)
.+|+++|.++.+..+.... ..+.+++.+.|||. +.|-+......+.-++..||+|..+. +--+++
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 8999999999999876642 33456889999998 69999999999999999999999855 778999
Q ss_pred CeeEEEEEEEeeeeeeCCCcchhhhhccCCCcceEEEEEEEEEEEEEEEEeEE
Q 021795 222 SQRNVVTVVQGYQVPLYGGVPVLASAKGHLDRAEVPLNLTFVMRSRAYILGRL 274 (307)
Q Consensus 222 stt~v~v~v~g~~vpLygag~~L~~~~~~~~~g~VpL~L~~~vr~R~kVlG~l 274 (307)
+++++.+.+.-.-.-|. ..+ .+......+|.+|++.+.+..-++|.+
T Consensus 109 g~~~v~Vpv~v~~~~l~---~~~---~~l~~~~~i~Y~L~g~L~id~pv~G~~ 155 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIAV---SLM---KDMCTDWDIDYQLDIGLTFDIPVVGDI 155 (174)
T ss_dssp EEEEEEEEEEESHHHHH---HTC---CCCCSSEEECEEEEEEEEEECTTSSEE
T ss_pred CcEEEEEEEEEEHHHHH---HHH---HhcCCCCccceEEEEEEEeccCCcCCE
Confidence 99999988776421111 111 111114688888888765443224543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=96.81 E-value=0.00028 Score=59.95 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCcEEEEEeEEEEeEEecCCCCCCCCCcceeEEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEeecccCC-cceecCC
Q 021795 143 YKPKIIVKNIVFENFNVQAGSDESGVPTDMLSLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQMK-KFSQSRK 221 (307)
Q Consensus 143 ~~P~f~V~s~~v~~f~v~~g~d~sgvpt~~lt~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp-~FyQ~~k 221 (307)
++|+++|.++.+..+... ...+.+++.+.|||. +.|.+...+..+.=++..||+|..+ ..--+++
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------------~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcc-------------eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 789999999888765443 224556889999998 6999999998898889999999884 4777999
Q ss_pred CeeEEEEEEEeeeeeeCCCcchhhhhccCCCcceEEEEEEEEEEEE
Q 021795 222 SQRNVVTVVQGYQVPLYGGVPVLASAKGHLDRAEVPLNLTFVMRSR 267 (307)
Q Consensus 222 stt~v~v~v~g~~vpLygag~~L~~~~~~~~~g~VpL~L~~~vr~R 267 (307)
+++++.+.+...-.-+ -..+.... . ...+|.+|++.+.+.
T Consensus 86 g~~~v~vpv~v~~~~l---~~~~~~l~--~-~~~i~Y~l~g~l~i~ 125 (151)
T 1xo8_A 86 DMTALDIPVVVPYSIL---FNLARDVG--V-DWDIDYELQIGLTID 125 (151)
T ss_dssp SEEEEEECCCEEHHHH---HHHHHHHH--H-HSEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEHHHH---HHHHHhcc--c-CCcccEEEEEEEEEc
Confidence 9999988766542111 11111111 1 457888888777543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=96.19 E-value=0.029 Score=46.80 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=53.7
Q ss_pred EEEEEEEEEEecCCCeEEEEEcCceEEEEEccEEeeccc-CCcceecCCCeeEEEEEEEeeeeee
Q 021795 174 SLNSTVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQ-MKKFSQSRKSQRNVVTVVQGYQVPL 237 (307)
Q Consensus 174 t~n~tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~-lp~FyQ~~kstt~v~v~v~g~~vpL 237 (307)
...+.+++.+.|||. +.+-++.....+...++.||+|. ...+--++.+++++.+.+.-+.-.+
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l 80 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFL 80 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHh
Confidence 455677899999997 69999999999999999999997 5778889999999999888775333
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=57.81 E-value=3.2 Score=27.83 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=19.0
Q ss_pred ceeehhhHHHHHHHHHHHHHheeeE--EEeecCC
Q 021795 113 RNVRLYVCIGFFFVLLFTVFCLILW--GASKPYK 144 (307)
Q Consensus 113 ~~rrc~~~~~~~~vll~gv~~LIlW--lv~RP~~ 144 (307)
.+.-.+++++++-+++++++.+++| +.++-++
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~~ 41 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 41 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4443355555556666677778888 5555444
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.57 E-value=6.1 Score=29.78 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHheeeEE
Q 021795 118 YVCIGFFFVLLFTVFCLILWG 138 (307)
Q Consensus 118 ~~~~~~~~vll~gv~~LIlWl 138 (307)
++++.++.++|+|+++|++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444555678888888888885
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.12 E-value=4.7 Score=28.47 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=20.9
Q ss_pred ceeehhhHHHHHHHHHHHHHheeeE--EEeecCCc
Q 021795 113 RNVRLYVCIGFFFVLLFTVFCLILW--GASKPYKP 145 (307)
Q Consensus 113 ~~rrc~~~~~~~~vll~gv~~LIlW--lv~RP~~P 145 (307)
.+.-.+++++++-+++++++.++|| +.++-++|
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 3443355555566667777888888 66666554
No 7
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=41.93 E-value=1.4 Score=32.06 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=10.7
Q ss_pred HHHHHHHHH--heeeEEEee
Q 021795 124 FFVLLFTVF--CLILWGASK 141 (307)
Q Consensus 124 ~~vll~gv~--~LIlWlv~R 141 (307)
.+++++|++ +|++|.+.+
T Consensus 36 ~lvFvlGl~GN~lvl~v~~~ 55 (64)
T 2lot_A 36 MLVFLLGTTGNGLVLWTVFR 55 (64)
T ss_dssp HHTTTTTTTSSSSHHHHHHH
T ss_pred HHHHHHHHhhhhhheeeeeE
Confidence 355566665 567776544
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=37.63 E-value=11 Score=25.08 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHheeeEE
Q 021795 119 VCIGFFFVLLFTVFCLILWG 138 (307)
Q Consensus 119 ~~~~~~~vll~gv~~LIlWl 138 (307)
+.+.++.++++|+++|.+|=
T Consensus 13 v~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444578888999888883
No 9
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=33.30 E-value=17 Score=33.41 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 021795 53 HHYYHCSP 60 (307)
Q Consensus 53 h~~~~~s~ 60 (307)
|+|.|||.
T Consensus 5 ~~~~~~~~ 12 (263)
T 3vmt_A 5 HHHHHHSS 12 (263)
T ss_dssp --------
T ss_pred cccccccc
Confidence 43334443
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.76 E-value=9.9 Score=26.79 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHheeeE--EEeecCCc
Q 021795 118 YVCIGFFFVLLFTVFCLILW--GASKPYKP 145 (307)
Q Consensus 118 ~~~~~~~~vll~gv~~LIlW--lv~RP~~P 145 (307)
+++++++-+++++++.+++| +.++-++|
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 45555566667777888888 66666554
No 11
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=27.10 E-value=9.6 Score=22.76 Aligned_cols=9 Identities=67% Similarity=0.686 Sum_probs=6.9
Q ss_pred CCCCcCccc
Q 021795 2 HAKTDSEGT 10 (307)
Q Consensus 2 ~~k~ds~~t 10 (307)
|.||||||.
T Consensus 3 hkktdsevq 11 (28)
T 1nwd_B 3 HKKTDSEVQ 11 (28)
T ss_dssp SSCCHHHHH
T ss_pred CccchHHHH
Confidence 778888874
No 12
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=25.16 E-value=17 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=8.9
Q ss_pred HHHHHHHHHHheeeEE
Q 021795 123 FFFVLLFTVFCLILWG 138 (307)
Q Consensus 123 ~~~vll~gv~~LIlWl 138 (307)
++.++++|++++|+|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3445555666666664
No 13
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=24.48 E-value=83 Score=26.84 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=34.9
Q ss_pred CcceeEEEE----EEEEEEecCCCeEEEEEcCceEEEEEccEEeecccCCcceecCCC
Q 021795 169 PTDMLSLNS----TVKILYRNPATFFAVHVTSTPLELHYFQLKLASGQMKKFSQSRKS 222 (307)
Q Consensus 169 pt~~lt~n~----tv~vt~rNPN~~fGI~Y~s~~v~l~Y~~~~lasg~lp~FyQ~~ks 222 (307)
|+..+++++ +++++-+| |..+-|.+... +...|.+..++.+.+|.=|+|++-
T Consensus 63 pt~s~t~q~gnG~tl~ltkk~-~d~V~v~~~G~-vt~i~sg~~~~g~wvp~~f~P~~~ 118 (165)
T 3d8m_A 63 PVQTLTVEAGNGLQLQLTKKN-NDLVIVRFFGS-VSNIQKGWNMSGTWVDRPFRPAAV 118 (165)
T ss_dssp CEEEEEEECSTTEEEEEEEET-TTEEEEEEEEE-ECSBCTTCBCCSCCCCGGGCCSSC
T ss_pred cceeEEEEeCCCcEEEEEEcc-CCEEEEEEeeE-EEeEEccceeecceecCCccccce
Confidence 444444333 55777888 76666655433 366678888888889888887775
No 14
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=22.68 E-value=18 Score=28.04 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccccccc
Q 021795 52 AHHYYHCSPIHHSRESS 68 (307)
Q Consensus 52 ~h~~~~~s~~~hsr~ss 68 (307)
+|+|.|||.|||++...
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (105)
T 2lki_A 4 SHHHHHHSSGRENLYFQ 20 (105)
T ss_dssp -----------------
T ss_pred ccccccccchhhhhhhh
Confidence 45556777778866443
No 15
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=23.57 E-value=25 Score=23.12 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=11.0
Q ss_pred HHheeeEEEeecCCcEE
Q 021795 131 VFCLILWGASKPYKPKI 147 (307)
Q Consensus 131 v~~LIlWlv~RP~~P~f 147 (307)
+++||+-.+.--+||+|
T Consensus 22 iisLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 22 IISLIILIMLWQKKPRY 38 (39)
Confidence 45566655666688876
Done!