Query 021796
Match_columns 307
No_of_seqs 290 out of 1715
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 1.7E-44 5.8E-49 313.4 13.4 189 110-301 1-191 (193)
2 3hcs_A TNF receptor-associated 99.9 8.2E-22 2.8E-26 167.2 8.6 122 48-176 9-137 (170)
3 3hct_A TNF receptor-associated 99.7 3.6E-17 1.2E-21 130.5 6.1 94 49-145 10-110 (118)
4 3knv_A TNF receptor-associated 99.6 4.7E-17 1.6E-21 133.9 2.1 89 51-142 25-130 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.6 1.3E-16 4.3E-21 126.8 4.0 90 52-144 18-115 (116)
6 3ztg_A E3 ubiquitin-protein li 99.1 5.4E-11 1.9E-15 90.0 5.1 68 51-119 7-84 (92)
7 1t1h_A Gspef-atpub14, armadill 99.1 6E-11 2.1E-15 86.9 4.0 62 53-115 4-72 (78)
8 1wgm_A Ubiquitin conjugation f 99.0 2.8E-10 9.5E-15 87.5 6.0 65 51-116 16-87 (98)
9 2ecv_A Tripartite motif-contai 99.0 1.1E-10 3.7E-15 86.5 3.4 60 50-110 12-83 (85)
10 2ysl_A Tripartite motif-contai 99.0 4.1E-10 1.4E-14 81.3 5.7 51 50-101 13-69 (73)
11 2kr4_A Ubiquitin conjugation f 99.0 2.7E-10 9.2E-15 85.3 4.8 63 52-115 9-77 (85)
12 2egp_A Tripartite motif-contai 99.0 8.2E-11 2.8E-15 86.2 1.7 59 50-109 5-76 (79)
13 2ecw_A Tripartite motif-contai 99.0 1.4E-10 4.7E-15 85.9 2.8 60 50-110 12-83 (85)
14 2csy_A Zinc finger protein 183 99.0 6.7E-10 2.3E-14 82.0 5.7 60 52-112 10-74 (81)
15 2kre_A Ubiquitin conjugation f 98.9 9.6E-10 3.3E-14 84.8 5.7 63 52-115 24-92 (100)
16 2y43_A E3 ubiquitin-protein li 98.9 2E-10 6.7E-15 88.2 1.3 65 51-115 16-86 (99)
17 2djb_A Polycomb group ring fin 98.9 1.2E-09 4E-14 78.9 5.1 52 50-101 8-62 (72)
18 2yur_A Retinoblastoma-binding 98.9 1.3E-09 4.5E-14 79.1 5.0 49 51-100 9-63 (74)
19 2ecy_A TNF receptor-associated 98.9 1.2E-09 4.1E-14 77.4 4.2 51 50-101 8-62 (66)
20 4ayc_A E3 ubiquitin-protein li 98.9 9E-10 3.1E-14 89.8 3.6 58 54-112 50-111 (138)
21 2ysj_A Tripartite motif-contai 98.9 1.9E-09 6.5E-14 75.5 4.6 45 50-95 13-63 (63)
22 3lrq_A E3 ubiquitin-protein li 98.9 4.1E-10 1.4E-14 86.8 1.2 62 51-112 16-84 (100)
23 3fl2_A E3 ubiquitin-protein li 98.8 1E-09 3.5E-14 87.6 3.3 62 52-114 47-116 (124)
24 1jm7_B BARD1, BRCA1-associated 98.8 1.4E-09 4.7E-14 86.1 3.5 65 51-115 16-84 (117)
25 1bor_A Transcription factor PM 98.8 1.4E-09 4.7E-14 74.7 2.6 46 55-101 4-49 (56)
26 2d8t_A Dactylidin, ring finger 98.8 3.4E-09 1.2E-13 76.2 4.8 47 54-101 12-61 (71)
27 2ckl_B Ubiquitin ligase protei 98.8 1.7E-09 5.7E-14 90.7 3.4 65 51-115 48-120 (165)
28 2ckl_A Polycomb group ring fin 98.8 1.3E-09 4.6E-14 84.8 2.6 64 52-115 10-83 (108)
29 1z6u_A NP95-like ring finger p 98.8 2.3E-09 8E-14 88.7 3.3 63 52-115 73-143 (150)
30 2yu4_A E3 SUMO-protein ligase 98.8 3.4E-09 1.2E-13 80.7 4.0 63 53-115 3-80 (94)
31 2ea6_A Ring finger protein 4; 98.7 3.5E-09 1.2E-13 75.2 2.9 49 51-100 9-67 (69)
32 3l11_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 82.8 3.1 62 52-114 10-85 (115)
33 2ct2_A Tripartite motif protei 98.7 1E-08 3.4E-13 76.4 4.9 50 51-101 9-68 (88)
34 2ecj_A Tripartite motif-contai 98.7 1.1E-08 3.6E-13 70.2 4.3 45 50-95 8-58 (58)
35 1jm7_A BRCA1, breast cancer ty 98.7 2.3E-09 7.8E-14 83.7 0.4 59 54-113 18-85 (112)
36 2c2l_A CHIP, carboxy terminus 98.7 1.1E-08 3.8E-13 92.0 5.0 63 52-115 203-272 (281)
37 1e4u_A Transcriptional repress 98.7 1.1E-08 3.8E-13 75.2 3.7 51 51-101 5-62 (78)
38 1x4j_A Ring finger protein 38; 98.6 3.3E-08 1.1E-12 71.6 5.1 49 53-101 19-72 (75)
39 2f42_A STIP1 homology and U-bo 98.6 1.9E-08 6.5E-13 85.3 4.1 63 52-115 101-170 (179)
40 3ng2_A RNF4, snurf, ring finge 98.6 7.8E-09 2.7E-13 73.9 1.4 48 53-101 6-63 (71)
41 2ecg_A Baculoviral IAP repeat- 98.6 4.8E-09 1.6E-13 76.4 -0.5 48 52-101 20-68 (75)
42 2ect_A Ring finger protein 126 98.6 5.5E-08 1.9E-12 70.9 5.2 50 52-101 10-64 (78)
43 4ic3_A E3 ubiquitin-protein li 98.6 3.9E-09 1.3E-13 76.7 -1.2 47 53-101 20-67 (74)
44 2ecn_A Ring finger protein 141 98.6 2.4E-08 8.3E-13 71.3 3.0 48 52-101 10-60 (70)
45 1g25_A CDK-activating kinase a 98.5 2.1E-08 7.1E-13 70.6 1.7 45 56-101 2-55 (65)
46 2ep4_A Ring finger protein 24; 98.5 9.9E-08 3.4E-12 68.8 5.1 50 52-101 10-64 (74)
47 1iym_A EL5; ring-H2 finger, ub 98.5 7.9E-08 2.7E-12 65.1 4.3 46 55-100 3-54 (55)
48 2xeu_A Ring finger protein 4; 98.5 2.2E-08 7.5E-13 69.9 1.4 45 56-101 2-56 (64)
49 2ea5_A Cell growth regulator w 98.5 1.2E-07 4.1E-12 67.7 4.6 45 55-101 13-58 (68)
50 1chc_A Equine herpes virus-1 r 98.5 1.1E-07 3.7E-12 67.3 4.2 46 56-101 4-52 (68)
51 2ecm_A Ring finger and CHY zin 98.5 8.6E-08 2.9E-12 64.9 3.5 44 56-100 4-54 (55)
52 2kiz_A E3 ubiquitin-protein li 98.5 1.7E-07 5.8E-12 66.6 5.0 49 53-101 10-63 (69)
53 2l0b_A E3 ubiquitin-protein li 98.4 2.5E-07 8.7E-12 69.7 3.9 46 54-100 37-88 (91)
54 3htk_C E3 SUMO-protein ligase 98.3 2.9E-07 9.9E-12 82.1 3.1 64 52-115 176-249 (267)
55 2yho_A E3 ubiquitin-protein li 98.3 2.5E-07 8.7E-12 67.9 2.2 46 54-101 15-61 (79)
56 4ap4_A E3 ubiquitin ligase RNF 98.3 1.9E-07 6.6E-12 74.5 1.5 46 55-101 5-60 (133)
57 1v87_A Deltex protein 2; ring- 98.2 5.7E-07 1.9E-11 70.3 3.4 45 57-101 25-94 (114)
58 2ecl_A Ring-box protein 2; RNF 98.1 4.5E-06 1.5E-10 61.4 5.2 46 56-101 14-76 (81)
59 2y1n_A E3 ubiquitin-protein li 98.0 2.2E-06 7.6E-11 80.8 3.6 46 55-101 330-379 (389)
60 3t6p_A Baculoviral IAP repeat- 98.0 2.5E-06 8.4E-11 79.6 3.7 47 53-101 291-338 (345)
61 4ap4_A E3 ubiquitin ligase RNF 97.9 2.3E-06 8E-11 68.0 1.4 48 54-101 69-125 (133)
62 2vje_A E3 ubiquitin-protein li 97.9 5.6E-06 1.9E-10 58.1 2.3 46 56-101 7-57 (64)
63 2yre_A F-box only protein 30; 97.8 1E-05 3.5E-10 61.4 3.0 53 115-170 37-89 (100)
64 2yre_A F-box only protein 30; 97.8 8.6E-06 2.9E-10 61.8 2.5 59 91-149 39-98 (100)
65 2vje_B MDM4 protein; proto-onc 97.8 9.4E-06 3.2E-10 56.7 2.3 45 57-101 7-56 (63)
66 1wim_A KIAA0161 protein; ring 97.8 5.4E-06 1.8E-10 62.6 0.9 43 56-98 4-61 (94)
67 3dpl_R Ring-box protein 1; ubi 97.6 2.7E-05 9.1E-10 60.3 3.3 45 57-101 37-101 (106)
68 2bay_A PRE-mRNA splicing facto 97.6 3.2E-05 1.1E-09 53.7 3.2 45 57-101 3-50 (61)
69 2yuc_A TNF receptor-associated 97.5 3.7E-05 1.3E-09 55.5 2.1 54 112-173 13-67 (76)
70 3hcs_A TNF receptor-associated 97.4 8E-05 2.7E-09 62.1 3.2 100 59-170 55-158 (170)
71 3vk6_A E3 ubiquitin-protein li 97.3 0.00016 5.3E-09 54.8 3.6 44 59-102 3-50 (101)
72 4a0k_B E3 ubiquitin-protein li 97.3 3.4E-05 1.2E-09 60.7 0.0 45 57-101 48-112 (117)
73 2d8s_A Cellular modulator of i 96.6 0.0018 6.2E-08 47.2 3.9 46 55-101 13-70 (80)
74 2d9k_A FLN29 gene product; zin 96.5 0.00034 1.2E-08 50.2 -0.4 50 114-171 16-65 (75)
75 2yuc_A TNF receptor-associated 96.5 0.00073 2.5E-08 48.5 1.3 37 110-150 39-75 (76)
76 2ct0_A Non-SMC element 1 homol 96.3 0.0074 2.5E-07 43.3 5.7 46 55-101 13-64 (74)
77 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.002 6.8E-08 59.5 2.1 47 55-101 306-373 (381)
78 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.02 6.7E-07 43.1 2.4 33 56-88 2-36 (101)
79 2cs3_A Protein C14ORF4, MY039 92.9 0.64 2.2E-05 33.5 8.0 72 55-168 13-87 (93)
80 2eod_A TNF receptor-associated 91.8 0.12 4.3E-06 34.9 3.2 51 115-173 10-62 (66)
81 2d9k_A FLN29 gene product; zin 91.2 0.12 4.1E-06 36.5 2.6 52 90-145 18-69 (75)
82 1vyx_A ORF K3, K3RING; zinc-bi 90.9 0.15 5E-06 34.8 2.8 45 56-100 5-58 (60)
83 3hct_A TNF receptor-associated 90.0 0.14 4.7E-06 39.5 2.2 63 107-175 45-110 (118)
84 2yt9_A Zinc finger-containing 89.7 0.58 2E-05 33.4 5.4 52 115-174 35-91 (95)
85 1wjp_A Zinc finger protein 295 88.5 0.45 1.6E-05 35.1 4.1 38 133-174 57-95 (107)
86 1rmd_A RAG1; V(D)J recombinati 88.2 0.37 1.3E-05 36.8 3.5 75 90-170 24-111 (116)
87 2dlq_A GLI-kruppel family memb 86.9 1 3.5E-05 33.7 5.3 108 55-174 5-120 (124)
88 1z60_A TFIIH basal transcripti 85.0 0.47 1.6E-05 32.2 2.2 37 59-95 17-58 (59)
89 2dmd_A Zinc finger protein 64, 83.8 2 6.9E-05 30.5 5.5 52 115-174 36-90 (96)
90 3m62_A Ubiquitin conjugation f 83.4 0.81 2.8E-05 47.6 4.1 63 52-115 886-955 (968)
91 3nw0_A Non-structural maintena 83.2 1 3.5E-05 39.3 4.2 45 56-101 179-229 (238)
92 3knv_A TNF receptor-associated 83.2 0.41 1.4E-05 38.3 1.5 28 143-172 102-130 (141)
93 1wg2_A Zinc finger (AN1-like) 80.9 3.2 0.00011 28.5 5.1 42 57-98 15-56 (64)
94 1wfp_A Zinc finger (AN1-like) 80.4 6 0.00021 27.9 6.5 43 55-97 23-65 (74)
95 2ko5_A Ring finger protein Z; 78.9 4.2 0.00014 30.1 5.5 48 52-101 23-73 (99)
96 1wfl_A Zinc finger protein 216 78.8 4.2 0.00014 28.7 5.3 41 57-97 25-65 (74)
97 2ee8_A Protein ODD-skipped-rel 78.3 4.3 0.00015 29.3 5.7 38 133-174 60-99 (106)
98 1wff_A Riken cDNA 2810002D23 p 78.2 6.9 0.00024 28.4 6.4 41 56-97 24-66 (85)
99 2rpc_A Zinc finger protein ZIC 77.8 3.7 0.00013 32.0 5.5 115 54-174 22-148 (155)
100 2kmk_A Zinc finger protein GFI 76.9 2.9 9.9E-05 28.5 4.1 73 91-171 3-80 (82)
101 2ct7_A Ring finger protein 31; 75.4 2.1 7.1E-05 31.0 3.1 32 57-88 25-61 (86)
102 1wfh_A Zinc finger (AN1-like) 74.9 7.3 0.00025 26.7 5.5 41 57-97 15-55 (64)
103 2dlq_A GLI-kruppel family memb 74.7 4.6 0.00016 29.9 5.1 78 90-175 8-93 (124)
104 2drp_A Protein (tramtrack DNA- 74.6 3 0.0001 27.3 3.6 51 115-173 10-65 (66)
105 2cup_A Skeletal muscle LIM-pro 73.9 1.9 6.6E-05 31.7 2.6 45 56-100 32-77 (101)
106 2jmo_A Parkin; IBR, E3 ligase, 73.5 1.9 6.6E-05 30.8 2.4 39 57-97 25-75 (80)
107 2j7j_A Transcription factor II 72.8 3.9 0.00013 27.9 4.0 75 93-172 7-85 (85)
108 2jne_A Hypothetical protein YF 72.8 0.68 2.3E-05 34.5 -0.1 38 58-100 33-72 (101)
109 2ct1_A Transcriptional repress 72.4 4.4 0.00015 27.5 4.1 53 115-175 15-72 (77)
110 2adr_A ADR1; transcription reg 70.7 6.2 0.00021 25.1 4.4 47 125-175 8-57 (60)
111 2ctd_A Zinc finger protein 512 69.4 4.4 0.00015 29.5 3.7 55 112-174 31-88 (96)
112 2gli_A Protein (five-finger GL 68.8 9.4 0.00032 29.4 5.9 11 58-68 4-14 (155)
113 2dmi_A Teashirt homolog 3; zin 67.9 2.8 9.7E-05 30.9 2.4 28 143-174 78-106 (115)
114 2xqn_T Testin, TESS; metal-bin 67.6 3.8 0.00013 31.4 3.2 46 56-101 29-75 (126)
115 2eod_A TNF receptor-associated 67.5 1.8 6.1E-05 28.8 1.1 30 139-173 4-33 (66)
116 3uk3_C Zinc finger protein 217 64.8 3.5 0.00012 26.0 2.1 45 125-173 10-57 (57)
117 1m3v_A FLIN4, fusion of the LI 64.8 3.7 0.00013 31.5 2.6 45 56-101 31-81 (122)
118 2lt7_A Transcriptional regulat 64.1 5.3 0.00018 31.0 3.4 77 91-175 24-105 (133)
119 1x3c_A Zinc finger protein 292 63.8 4.1 0.00014 28.7 2.3 29 144-174 26-55 (73)
120 2d9h_A Zinc finger protein 692 63.7 4.9 0.00017 27.3 2.8 47 125-175 13-65 (78)
121 1llm_C Chimera of ZIF23-GCN4; 63.6 0.59 2E-05 33.2 -2.2 75 91-173 5-83 (88)
122 1a1h_A QGSR zinc finger peptid 63.2 10 0.00035 26.1 4.6 52 114-173 33-87 (90)
123 2csh_A Zinc finger protein 297 62.9 6.2 0.00021 28.7 3.5 51 115-173 37-90 (110)
124 1iml_A CRIP, cysteine rich int 62.6 7.3 0.00025 26.8 3.6 43 56-99 26-71 (76)
125 1vfy_A Phosphatidylinositol-3- 62.4 6.5 0.00022 27.4 3.3 30 58-87 12-44 (73)
126 2i13_A AART; DNA binding, zinc 61.9 7.9 0.00027 31.2 4.3 77 90-174 78-159 (190)
127 1x61_A Thyroid receptor intera 60.3 5.2 0.00018 27.2 2.4 37 57-94 33-70 (72)
128 1bbo_A Human enhancer-binding 60.0 12 0.00041 23.3 4.1 45 125-173 7-54 (57)
129 1dl6_A Transcription factor II 59.0 10 0.00034 25.3 3.6 35 50-86 4-38 (58)
130 2jrp_A Putative cytoplasmic pr 58.5 2.5 8.6E-05 30.5 0.5 38 58-100 3-42 (81)
131 2lv2_A Insulinoma-associated p 58.4 11 0.00039 26.8 4.1 46 125-174 34-82 (85)
132 2ebt_A Krueppel-like factor 5; 58.0 18 0.0006 25.4 5.2 51 115-171 45-98 (100)
133 2xjy_A Rhombotin-2; oncoprotei 57.3 7 0.00024 30.0 3.0 45 55-100 27-77 (131)
134 1x5w_A Zinc finger protein 64, 57.3 9.2 0.00031 25.3 3.3 46 125-174 15-63 (70)
135 2jtn_A LIM domain-binding prot 57.1 7.2 0.00025 32.0 3.2 14 57-70 60-73 (182)
136 2rgt_A Fusion of LIM/homeobox 56.2 8.5 0.00029 31.1 3.4 46 55-101 31-77 (169)
137 1joc_A EEA1, early endosomal a 55.2 7.6 0.00026 30.2 2.8 30 58-87 70-102 (125)
138 3lqh_A Histone-lysine N-methyl 55.0 13 0.00043 31.0 4.3 43 59-101 4-66 (183)
139 2jr6_A UPF0434 protein NMA0874 54.4 8 0.00027 26.8 2.5 31 52-85 3-33 (68)
140 3i2d_A E3 SUMO-protein ligase 53.4 10 0.00035 35.1 3.8 60 55-114 247-316 (371)
141 2fiy_A Protein FDHE homolog; F 53.2 4 0.00014 37.0 1.0 44 55-98 180-231 (309)
142 1rut_X Flinc4, fusion protein 52.6 3.8 0.00013 34.0 0.7 44 56-100 31-80 (188)
143 2jny_A Uncharacterized BCR; st 52.1 7.9 0.00027 26.8 2.2 33 50-85 3-35 (67)
144 1x6e_A Zinc finger protein 24; 51.7 12 0.00041 24.8 3.1 51 115-173 14-67 (72)
145 1dvp_A HRS, hepatocyte growth 51.7 9.3 0.00032 32.5 3.1 35 53-87 157-194 (220)
146 1x4u_A Zinc finger, FYVE domai 51.1 18 0.00062 25.8 4.1 31 57-87 14-47 (84)
147 1z2q_A LM5-1; membrane protein 51.0 22 0.00076 25.3 4.6 32 56-87 20-54 (84)
148 2gqj_A Zinc finger protein KIA 50.0 4.9 0.00017 29.0 0.9 54 114-175 23-81 (98)
149 2i13_A AART; DNA binding, zinc 49.5 16 0.00053 29.4 4.1 107 56-174 20-131 (190)
150 2rpc_A Zinc finger protein ZIC 48.7 31 0.0011 26.4 5.7 53 116-174 63-118 (155)
151 1wfk_A Zinc finger, FYVE domai 48.7 16 0.00055 26.4 3.5 31 57-87 9-42 (88)
152 1ubd_C Protein (YY1 zinc finge 48.6 24 0.00082 25.8 4.8 80 90-173 35-119 (124)
153 4fo9_A E3 SUMO-protein ligase 48.3 14 0.00049 34.0 3.9 59 55-113 213-281 (360)
154 2yw8_A RUN and FYVE domain-con 48.1 13 0.00046 26.4 3.0 31 57-87 19-52 (82)
155 2wbt_A B-129; zinc finger; 2.7 47.6 23 0.00077 26.4 4.5 53 113-174 72-126 (129)
156 1weo_A Cellulose synthase, cat 47.4 12 0.0004 27.4 2.5 44 57-100 16-69 (93)
157 2cot_A Zinc finger protein 435 47.0 25 0.00086 23.5 4.3 45 125-173 24-71 (77)
158 2dlk_A Novel protein; ZF-C2H2 46.7 22 0.00074 23.7 3.9 54 116-173 8-65 (79)
159 2gli_A Protein (five-finger GL 46.4 28 0.00095 26.6 5.0 11 162-172 113-123 (155)
160 3t7l_A Zinc finger FYVE domain 46.2 21 0.00072 25.8 3.9 31 57-87 20-53 (90)
161 2eln_A Zinc finger protein 406 46.1 13 0.00043 22.2 2.2 25 144-170 8-33 (38)
162 3zyq_A Hepatocyte growth facto 45.4 16 0.00055 31.2 3.6 34 54-87 161-197 (226)
163 3mjh_B Early endosome antigen 45.0 9.2 0.00031 22.8 1.4 27 145-174 5-31 (34)
164 3vhs_A ATPase wrnip1; zinc fin 44.7 10 0.00036 20.9 1.4 24 114-141 5-28 (29)
165 1wfe_A Riken cDNA 2310008M20 p 44.3 21 0.00073 25.8 3.6 28 55-83 23-53 (86)
166 2kpi_A Uncharacterized protein 43.9 16 0.00055 24.1 2.6 30 50-84 3-34 (56)
167 1x6h_A Transcriptional repress 43.9 32 0.0011 23.1 4.5 53 116-176 16-75 (86)
168 2epa_A Krueppel-like factor 10 43.0 27 0.00091 22.9 3.8 51 115-169 17-70 (72)
169 2a25_A Ubiquitin ligase SIAH1; 43.0 11 0.00036 31.6 2.0 46 95-140 16-61 (193)
170 1wil_A KIAA1045 protein; ring 42.8 29 0.00099 25.1 3.9 37 52-88 10-47 (89)
171 2lce_A B-cell lymphoma 6 prote 42.4 30 0.001 22.8 4.1 45 125-173 23-70 (74)
172 1y02_A CARP2, FYVE-ring finger 41.5 16 0.00056 28.2 2.7 31 58-88 20-53 (120)
173 2js4_A UPF0434 protein BB2007; 41.5 15 0.00051 25.6 2.2 31 52-85 3-33 (70)
174 2hf1_A Tetraacyldisaccharide-1 40.1 14 0.00047 25.6 1.9 31 52-85 3-33 (68)
175 1x4v_A Hypothetical protein LO 39.6 25 0.00084 23.9 3.1 26 57-83 12-40 (63)
176 1sp2_A SP1F2; zinc finger, tra 39.1 28 0.00097 18.2 2.9 25 144-170 1-26 (31)
177 1x68_A FHL5 protein; four-and- 38.4 19 0.00065 24.6 2.5 32 57-88 35-66 (76)
178 2jp9_A Wilms tumor 1; DNA bind 38.0 36 0.0012 24.5 4.2 49 115-169 66-117 (119)
179 1wd2_A Ariadne-1 protein homol 37.5 7.4 0.00025 26.2 0.1 36 58-99 7-44 (60)
180 2wbs_A Krueppel-like factor 4; 36.9 48 0.0017 22.3 4.5 50 115-170 35-87 (89)
181 2cor_A Pinch protein; LIM doma 36.7 22 0.00076 24.6 2.6 31 57-88 41-71 (79)
182 1paa_A Yeast transcription fac 36.2 27 0.00094 17.9 2.5 26 144-173 1-27 (30)
183 1tf6_A Protein (transcription 36.2 66 0.0022 25.5 5.9 15 55-69 10-26 (190)
184 2vrw_B P95VAV, VAV1, proto-onc 35.8 23 0.0008 32.6 3.4 39 54-93 354-396 (406)
185 2d8z_A Four and A half LIM dom 34.6 26 0.0009 23.3 2.7 33 56-88 30-62 (70)
186 1x4w_A Hypothetical protein FL 34.4 22 0.00075 24.5 2.1 39 58-96 16-57 (67)
187 1wig_A KIAA1808 protein; LIM d 33.9 22 0.00076 24.2 2.2 32 56-88 30-63 (73)
188 1b8t_A Protein (CRP1); LIM dom 33.7 29 0.00099 28.5 3.3 11 58-68 116-126 (192)
189 2pk7_A Uncharacterized protein 33.6 14 0.00048 25.6 1.1 31 52-85 3-33 (69)
190 1ubd_C Protein (YY1 zinc finge 33.3 47 0.0016 24.1 4.2 79 90-174 6-90 (124)
191 1zfd_A SWI5; DNA binding motif 33.2 49 0.0017 17.3 3.3 26 144-171 2-28 (32)
192 4gzn_C ZFP-57, zinc finger pro 33.0 50 0.0017 21.6 3.8 44 125-173 10-56 (60)
193 1x4l_A Skeletal muscle LIM-pro 32.8 23 0.00078 23.8 2.1 33 56-88 34-66 (72)
194 2kvf_A Zinc finger and BTB dom 32.5 28 0.00096 17.6 2.1 23 144-170 2-25 (28)
195 1klr_A Zinc finger Y-chromosom 32.4 29 0.001 17.6 2.2 25 145-173 2-27 (30)
196 1zw8_A Zinc-responsive transcr 32.4 22 0.00075 23.8 1.9 52 117-172 3-64 (64)
197 2vy4_A U11/U12 small nuclear r 32.2 21 0.00073 21.4 1.6 25 115-142 5-29 (37)
198 1wys_A Riken cDNA 2310008M20 p 31.3 63 0.0022 22.7 4.2 36 58-94 15-53 (75)
199 1ard_A Yeast transcription fac 31.2 35 0.0012 17.2 2.3 24 144-171 1-25 (29)
200 2cur_A Skeletal muscle LIM-pro 31.0 30 0.001 23.0 2.5 32 57-88 31-62 (69)
201 1tf6_A Protein (transcription 30.6 65 0.0022 25.5 4.9 81 90-174 43-132 (190)
202 1weu_A Inhibitor of growth fam 30.0 1.6E+02 0.0053 21.3 6.3 45 53-98 32-85 (91)
203 1p7a_A BF3, BKLF, kruppel-like 29.9 47 0.0016 18.1 2.9 24 144-171 10-34 (37)
204 3pwf_A Rubrerythrin; non heme 29.9 27 0.00092 28.5 2.4 11 89-99 153-163 (170)
205 1rik_A E6APC1 peptide; E6-bind 29.8 33 0.0011 17.4 2.1 24 144-171 1-25 (29)
206 1nyp_A Pinch protein; LIM doma 29.0 25 0.00087 23.1 1.8 30 57-87 31-61 (66)
207 2m0e_A Zinc finger and BTB dom 28.8 29 0.00099 17.4 1.7 24 144-171 1-25 (29)
208 2d8x_A Protein pinch; LIM doma 28.7 26 0.00087 23.4 1.8 32 57-88 31-62 (70)
209 1x64_A Alpha-actinin-2 associa 28.5 1.5E+02 0.0051 20.6 6.8 41 55-101 23-63 (89)
210 2kvh_A Zinc finger and BTB dom 28.3 32 0.0011 17.2 1.8 23 144-170 2-25 (27)
211 2dar_A PDZ and LIM domain prot 28.0 40 0.0014 23.8 2.8 37 58-100 26-62 (90)
212 2elx_A Zinc finger protein 406 27.9 37 0.0013 18.2 2.1 26 144-173 6-32 (35)
213 1wyh_A SLIM 2, skeletal muscle 27.8 36 0.0012 22.7 2.4 31 57-88 33-64 (72)
214 2kvg_A Zinc finger and BTB dom 27.5 28 0.00097 17.6 1.5 23 144-170 2-25 (27)
215 2k16_A Transcription initiatio 27.4 56 0.0019 22.4 3.4 45 55-99 16-69 (75)
216 2zet_C Melanophilin; complex, 27.0 39 0.0013 27.1 2.8 31 56-86 67-101 (153)
217 1wjv_A Cell growth regulating 27.0 18 0.00063 25.7 0.7 40 124-167 15-55 (79)
218 1a7i_A QCRP2 (LIM1); LIM domai 26.8 24 0.00083 24.4 1.4 40 56-96 33-74 (81)
219 1x4k_A Skeletal muscle LIM-pro 26.7 34 0.0012 22.8 2.1 30 58-87 34-63 (72)
220 2m0d_A Zinc finger and BTB dom 26.7 44 0.0015 16.8 2.3 24 144-171 2-26 (30)
221 1znf_A 31ST zinc finger from X 26.5 49 0.0017 16.3 2.4 22 145-170 1-23 (27)
222 1b8t_A Protein (CRP1); LIM dom 26.4 34 0.0012 28.1 2.4 44 55-98 32-76 (192)
223 1srk_A Zinc finger protein ZFP 26.1 50 0.0017 17.7 2.5 25 144-172 6-31 (35)
224 1x62_A C-terminal LIM domain p 25.7 1.1E+02 0.0039 20.6 4.9 39 56-100 14-52 (79)
225 1flk_A TNF receptor associated 25.6 21 0.00071 30.4 1.0 25 115-139 9-38 (228)
226 2l7x_A Envelope glycoprotein; 25.5 42 0.0014 23.2 2.3 34 131-170 18-51 (77)
227 1f2i_G Fusion of N-terminal 17 25.4 57 0.002 21.1 3.1 50 115-170 19-71 (73)
228 2zjr_Z 50S ribosomal protein L 25.3 30 0.001 23.2 1.6 15 53-67 26-40 (60)
229 2iyb_E Testin, TESS, TES; LIM 24.9 32 0.0011 22.7 1.7 31 56-87 31-63 (65)
230 2egq_A FHL1 protein; LIM domai 24.9 26 0.00089 23.8 1.2 11 59-69 17-27 (77)
231 1zbd_B Rabphilin-3A; G protein 24.6 51 0.0017 25.8 3.0 33 56-88 54-90 (134)
232 1wen_A Inhibitor of growth fam 24.1 1.7E+02 0.0059 19.9 5.4 44 54-98 13-65 (71)
233 2cu8_A Cysteine-rich protein 2 23.8 41 0.0014 22.8 2.1 11 58-68 37-47 (76)
234 2dj7_A Actin-binding LIM prote 23.8 51 0.0018 22.8 2.7 38 57-100 15-53 (80)
235 2jvx_A NF-kappa-B essential mo 23.6 23 0.00077 20.1 0.5 13 57-69 3-15 (28)
236 1rim_A E6APC2 peptide; E6-bind 23.3 59 0.002 17.4 2.4 24 144-171 1-25 (33)
237 3iuf_A Zinc finger protein UBI 23.0 42 0.0015 20.2 1.9 27 144-174 6-33 (48)
238 2epx_A Zinc finger protein 28 22.8 55 0.0019 19.0 2.4 26 144-173 11-37 (47)
239 2d8v_A Zinc finger FYVE domain 22.6 54 0.0019 22.5 2.4 32 55-89 6-39 (67)
240 2elt_A Zinc finger protein 406 22.5 48 0.0017 17.9 2.0 23 144-170 8-31 (36)
241 2ept_A Zinc finger protein 32; 22.4 71 0.0024 17.9 2.8 25 144-172 9-34 (41)
242 2gvi_A Conserved hypothetical 22.3 37 0.0012 28.5 1.9 35 53-87 168-202 (204)
243 2lvu_A Zinc finger and BTB dom 27.7 19 0.00064 18.1 0.0 23 144-170 1-24 (26)
244 2els_A Zinc finger protein 406 21.8 51 0.0017 17.9 2.0 24 144-171 8-32 (36)
245 2elq_A Zinc finger protein 406 21.8 54 0.0018 17.7 2.1 23 144-170 8-31 (36)
246 2eos_A B-cell lymphoma 6 prote 21.7 78 0.0027 17.8 2.9 25 144-172 10-35 (42)
247 2eon_A ZFP-95, zinc finger pro 21.7 72 0.0025 18.5 2.8 25 144-172 11-36 (46)
248 2enh_A Zinc finger protein 28 21.4 87 0.003 18.1 3.1 26 144-173 11-37 (46)
249 2dar_A PDZ and LIM domain prot 21.4 1.6E+02 0.0055 20.4 5.1 33 56-88 50-82 (90)
250 2elo_A Zinc finger protein 406 21.2 47 0.0016 18.1 1.7 26 144-173 8-34 (37)
251 2elp_A Zinc finger protein 406 20.9 48 0.0016 18.1 1.7 23 144-170 8-32 (37)
252 3k1f_M Transcription initiatio 20.6 62 0.0021 26.8 2.8 36 51-86 15-50 (197)
253 1j2o_A FLIN2, fusion of rhombo 20.5 53 0.0018 24.3 2.3 39 56-95 29-71 (114)
254 2elv_A Zinc finger protein 406 20.5 68 0.0023 17.3 2.3 23 144-170 8-31 (36)
255 2m0f_A Zinc finger and BTB dom 20.3 54 0.0019 16.3 1.8 23 144-170 1-24 (29)
256 1ncs_A Peptide M30F, transcrip 20.2 30 0.001 20.7 0.7 26 143-170 16-42 (47)
257 1x63_A Skeletal muscle LIM-pro 20.2 50 0.0017 22.6 2.0 29 58-87 44-73 (82)
258 2el5_A Zinc finger protein 268 20.2 82 0.0028 17.7 2.8 26 144-173 9-35 (42)
259 2ytn_A Zinc finger protein 347 20.0 1E+02 0.0034 17.7 3.2 27 143-173 10-37 (46)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=1.7e-44 Score=313.42 Aligned_cols=189 Identities=29% Similarity=0.632 Sum_probs=132.3
Q ss_pred HhhccccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCC-CcccCceeEEEEee
Q 021796 110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKV-DMHDGSTFNHRYVK 188 (307)
Q Consensus 110 ~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~-~~~~g~~~~~~~~~ 188 (307)
+++++++||+|+.+||+++++|.++..||+.|+|+||.||.+|.+|+|+|+.++|..|++.+|++ .++.|+++ .|++
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~ 78 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA 78 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence 46789999999999999999999999999999999999999988899999999999999999997 46778876 5777
Q ss_pred cccccccccceEEEEEeecCceEEEEEeeeeeCC-ccEEEEEEEEeCChhhccCcEEEEEEecCCceEEEeeecceeecc
Q 021796 189 ANALEIENATWMLTVFNCFGRHFCLHFEAFHLGM-APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDS 267 (307)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~F~l~~~~~~~~~-~~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~~si~~~ 267 (307)
++++.....+|+ ++++|||++|+|+++++.++. +++|+++|++||++++|++|+|+|++.+++|+|+|+++|+|++++
T Consensus 79 ~~~~l~~~~~~~-~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~ 157 (193)
T 2a25_A 79 TDINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG 157 (193)
T ss_dssp ECCC----CEEE-EEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred cccccccceeEE-EEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence 777655667896 588999999999999998765 367788899999999999999999999999999999999999999
Q ss_pred ccccccCCCeeEEcCcccceecCCCeEEEEEEEE
Q 021796 268 HKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVA 301 (307)
Q Consensus 268 ~~~~~~~~d~l~i~~~~~~~~~~~~~~~l~~~i~ 301 (307)
+..++++.|||+||++++++|++|++|.|+|+|+
T Consensus 158 ~~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~ 191 (193)
T 2a25_A 158 IATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 191 (193)
T ss_dssp SHHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEE
T ss_pred ccccccCCCEEEEcHHHHHhhcCCCeEEEEEEEE
Confidence 9998899999999999999999999999999995
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.85 E-value=8.2e-22 Score=167.24 Aligned_cols=122 Identities=20% Similarity=0.408 Sum_probs=109.5
Q ss_pred CCCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhcccccccc
Q 021796 48 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLELPCRY 120 (307)
Q Consensus 48 ~~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~~~C~n 120 (307)
..+...+.+.+.||||++++.+|+. ++|||+||..|+.++. ..||.||.++.. .++.++++++.++++.|+|
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n 87 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN 87 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS
T ss_pred hhhccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC
Confidence 3356678899999999999999976 5999999999999874 489999999876 5789999999999999998
Q ss_pred ccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCc
Q 021796 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDM 176 (307)
Q Consensus 121 ~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~ 176 (307)
.||++.+++.++..|+++|+|+++.|| +|++.+.+.+|..|+......+.
T Consensus 88 --~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~ 137 (170)
T 3hcs_A 88 --EGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQ 137 (170)
T ss_dssp --TTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCE
T ss_pred --CCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCC
Confidence 599999999999999999999999998 39999999999999988777554
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.67 E-value=3.6e-17 Score=130.48 Aligned_cols=94 Identities=21% Similarity=0.439 Sum_probs=82.9
Q ss_pred CCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccccccccc
Q 021796 49 TSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLELPCRYQ 121 (307)
Q Consensus 49 ~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~~~C~n~ 121 (307)
.....+.+.+.||||++++..|+.. +|||+||..|+.++. ..||.||.++.. .++..+++.+.++++.|+|
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n- 87 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN- 87 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred hhccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence 3556788899999999999999776 999999999998873 489999999876 4788999999999999997
Q ss_pred cCCcceeecccchHHHHHhCCCcC
Q 021796 122 IWGCQDIFPYYSKLKHEKNCNYRP 145 (307)
Q Consensus 122 ~~GC~~~~~~~~~~~He~~C~~~p 145 (307)
.||++.+++.++.+|+++|.+..
T Consensus 88 -~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 88 -EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp -TTCCCEEEGGGSGGGTSSSCC--
T ss_pred -CCCCCEEeeHHHHHHHHHchhhh
Confidence 79999999999999999988753
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.63 E-value=4.7e-17 Score=133.91 Aligned_cols=89 Identities=27% Similarity=0.422 Sum_probs=78.0
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc------------ccchhHHHHhhcc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN------------IRCLALEKVAESL 114 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~------------~~~~~le~~~~~l 114 (307)
...+.+.+.||||++++.+|+.+ +|||+||..|+.++. ..||.||.++.. .++..+++.+.++
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 35778999999999999999765 999999999999884 379999997531 3778899999999
Q ss_pred ccccccccCCcceeecccchHH-HHHhCC
Q 021796 115 ELPCRYQIWGCQDIFPYYSKLK-HEKNCN 142 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~~~~~~-He~~C~ 142 (307)
+++|+| .||.|.+++.+++. |+..|.
T Consensus 104 ~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 104 PAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp EEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred ccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 999999 69999999999998 998775
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.62 E-value=1.3e-16 Score=126.77 Aligned_cols=90 Identities=19% Similarity=0.396 Sum_probs=79.6
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccccccccccC
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLELPCRYQIW 123 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~~~C~n~~~ 123 (307)
.++.+.+.||||++++.+|+.. +|||+||..|+.++. ..||.||.++.. ..+..+.+++..+++.|+|.
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~-- 94 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ-- 94 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--
T ss_pred HhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--
Confidence 3456788999999999999876 999999999998873 579999999875 35678899999999999995
Q ss_pred CcceeecccchHHHHHhCCCc
Q 021796 124 GCQDIFPYYSKLKHEKNCNYR 144 (307)
Q Consensus 124 GC~~~~~~~~~~~He~~C~~~ 144 (307)
||++.+++.++..|+++|.+.
T Consensus 95 gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp TCCCEEEHHHHHHHHHTSCCC
T ss_pred CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=5.4e-11 Score=89.99 Aligned_cols=68 Identities=21% Similarity=0.475 Sum_probs=56.5
Q ss_pred ccCCCCeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCC----cccchhHHHHhhccccccc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELG----NIRCLALEKVAESLELPCR 119 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~----~~~~~~le~~~~~l~~~C~ 119 (307)
...+.+.+.||||++++.+|+.. + |||+||..|+.++. ..||.||.++. ..+|..++++++.+.-.-.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 35678889999999999999877 7 99999999998873 58999999973 2678899998888765443
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=6e-11 Score=86.94 Aligned_cols=62 Identities=23% Similarity=0.394 Sum_probs=53.0
Q ss_pred CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
++.+.+.||||++++.+|+.. +|||+||..|+.++. ..||.|+.++.. .+|..++++++.+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 467789999999999999887 899999999998874 569999999864 57888888887654
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=2.8e-10 Score=87.52 Aligned_cols=65 Identities=22% Similarity=0.154 Sum_probs=56.1
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCC-ceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhcccc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNG-HTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLEL 116 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cG-H~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~~ 116 (307)
...+.+.|.||||+++|++||.. +|| |+||..|+.++. ..||.|+.++.. .+|..+.+++..+.-
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 35668899999999999999887 899 999999999884 689999999875 688889888887643
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=86.49 Aligned_cols=60 Identities=27% Similarity=0.649 Sum_probs=48.2
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhh---------cCCCCCCcccCCc---ccchhHHHH
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---------RTGCPTCRHELGN---IRCLALEKV 110 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~~~~~le~~ 110 (307)
....+.+.+.|+||++.+..|+.. +|||.||..|+.++ ...||.||..+.. .+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 345678889999999999999877 99999999999876 3689999998874 345544443
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.1e-10 Score=81.25 Aligned_cols=51 Identities=27% Similarity=0.786 Sum_probs=44.4
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhcC------CCCCCcccCCc
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRT------GCPTCRHELGN 101 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~------~CP~Cr~~~~~ 101 (307)
....+.+.+.||||++.+..|+.. +|||.||..|+.++.. .||.||.++..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345678889999999999999887 9999999999998853 79999998764
No 11
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=2.7e-10 Score=85.25 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=54.7
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
..+.+.|.||||+++|++||.. +|||+||..|+.++. ..||.|+.++.. .+|..+.++++.+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 4567899999999999999887 799999999999883 789999999875 67888888887663
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.00 E-value=8.2e-11 Score=86.23 Aligned_cols=59 Identities=31% Similarity=0.695 Sum_probs=47.2
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----------CCCCCCcccCCc---ccchhHHH
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----------TGCPTCRHELGN---IRCLALEK 109 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----------~~CP~Cr~~~~~---~~~~~le~ 109 (307)
....+.+.+.||||++.+..|+.. +|||.||..|+.++. ..||.||.++.. .+|..+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hHhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 345678899999999999999876 999999999998752 479999998864 34444443
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=1.4e-10 Score=85.92 Aligned_cols=60 Identities=25% Similarity=0.618 Sum_probs=47.8
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhh---------cCCCCCCcccCCc---ccchhHHHH
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---------RTGCPTCRHELGN---IRCLALEKV 110 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~~~~~le~~ 110 (307)
....+.+.+.|+||++.+..|+.. +|||.||..|+.++ ...||.||.++.. .+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345677889999999999999876 89999999999876 3579999998864 345555444
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=6.7e-10 Score=81.99 Aligned_cols=60 Identities=18% Similarity=0.384 Sum_probs=47.4
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc--ccchhHHHHhh
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN--IRCLALEKVAE 112 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~--~~~~~le~~~~ 112 (307)
....+.+.|+||++.+..|+.. +|||+||..|+.++. ..||.||.++.. .++..+.+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred ccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 4456788999999999999876 999999999998883 689999999864 34544444443
No 15
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=9.6e-10 Score=84.81 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=55.1
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
..+.+.|.||||+++|.+||.. +|||+||..|+.++. ..||.|+.++.. .+|..+.+++..+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 4567899999999999999988 799999999999884 689999999875 68888888887764
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=88.19 Aligned_cols=65 Identities=25% Similarity=0.537 Sum_probs=54.3
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
...+.+.+.|+||++.+.+|+..-+|||.||..|+.++. ..||.||.++.. .+|..++++++.++
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 345567899999999999997654799999999998884 689999999874 57888888887764
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=78.85 Aligned_cols=52 Identities=21% Similarity=0.502 Sum_probs=44.8
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
...++.+.+.|+||++.+.+|+..-+|||.||..|+.++. ..||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 3466788999999999999997655899999999998873 789999998865
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=79.09 Aligned_cols=49 Identities=24% Similarity=0.657 Sum_probs=42.8
Q ss_pred ccCCCCeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCC
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELG 100 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~ 100 (307)
...+.+.+.||||++.+.+|+.. + |||+||..|+.++. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 45678899999999999999887 7 99999999999884 48999999754
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.2e-09 Score=77.39 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=44.0
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN 101 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~ 101 (307)
....+.+.+.||||++.+..|+.. +|||.||..|+.++. ..||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345667889999999999999876 999999999999874 579999998764
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.87 E-value=9e-10 Score=89.77 Aligned_cols=58 Identities=22% Similarity=0.584 Sum_probs=46.0
Q ss_pred CCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc-ccchhHHHHhh
Q 021796 54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN-IRCLALEKVAE 112 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~-~~~~~le~~~~ 112 (307)
+.+.+.||||++.+.+|+.. +|||.||..|+.+|. ..||.||.++.. ..+..+..++.
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred ccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 34567899999999999887 899999999999874 789999999875 33444444433
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=75.54 Aligned_cols=45 Identities=31% Similarity=0.844 Sum_probs=39.0
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCC
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTC 95 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~C 95 (307)
....+.+.+.||||++.+.+|+.. +|||+||..|+.++. ..||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999999999887 999999999999884 369887
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.86 E-value=4.1e-10 Score=86.75 Aligned_cols=62 Identities=24% Similarity=0.498 Sum_probs=49.0
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhh
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAE 112 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~ 112 (307)
...+.+.+.|+||++.+..|+..-+|||+||..|+.++. ..||.||.++.. .+++.++.+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 345678899999999999998723899999999999883 589999999865 35555555544
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=87.64 Aligned_cols=62 Identities=32% Similarity=0.685 Sum_probs=52.4
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhcc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESL 114 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l 114 (307)
..+.+.+.||||++.+.+|+.. +|||+||..|+.++. ..||.||.++.. .+|..+.+++..+
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred HhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 4556788999999999999887 999999999998873 489999999865 5778888887665
No 24
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.4e-09 Score=86.10 Aligned_cols=65 Identities=25% Similarity=0.497 Sum_probs=53.6
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
...+.+.+.||||++++..|+...+|||+||..|+.++. ..||.||.++.. .+|..+.+++..+.
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 345577899999999999998766899999999999885 589999999864 56788888777543
No 25
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.4e-09 Score=74.75 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=41.1
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
.+.+.|+||++.+..|+.. +|||+||..|+.++...||.||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHccCCCCCCcCCcEeec
Confidence 5678899999999999877 899999999998877899999998764
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.4e-09 Score=76.16 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=41.1
Q ss_pred CCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
..+.+.|+||++.+..|+.. +|||.||..|+.++. ..||.||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35678999999999999887 899999999999873 679999998763
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.81 E-value=1.7e-09 Score=90.69 Aligned_cols=65 Identities=23% Similarity=0.540 Sum_probs=53.7
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccc
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLE 115 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~ 115 (307)
...+.+.+.||||++.+.+|+...+|||.||..|+.++. ..||.||.++.. .+|..+++++..+.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 345678899999999999998766899999999999884 569999999864 46788888887764
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.81 E-value=1.3e-09 Score=84.84 Aligned_cols=64 Identities=19% Similarity=0.391 Sum_probs=52.7
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc-------ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN-------IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~-------~~~~~le~~~~~l~ 115 (307)
..+.+.+.||||++.+.+|+...+|||+||..|+.++. ..||.|+..+.. .+|..+.+++..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 45577899999999999998765899999999999884 689999999864 35677778777653
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.78 E-value=2.3e-09 Score=88.65 Aligned_cols=63 Identities=29% Similarity=0.662 Sum_probs=53.3
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~ 115 (307)
..+.+.+.|+||++++.+|+.+ +|||+||..|+.++. ..||.||.++.. .+|..+.+++..+.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred HhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3456788999999999999887 999999999999884 379999999875 47888888887654
No 30
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=3.4e-09 Score=80.67 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=51.7
Q ss_pred CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---------CCCCC--Cccc-CCc---ccchhHHHHhhccc
Q 021796 53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---------TGCPT--CRHE-LGN---IRCLALEKVAESLE 115 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---------~~CP~--Cr~~-~~~---~~~~~le~~~~~l~ 115 (307)
...+.|.||||+++|.+||....|||+||..|+.++. ..||. |+.. +.. .+|..|.+++..+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 3467899999999999998873499999999998883 28999 8865 543 68899999888764
No 31
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.5e-09 Score=75.17 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=41.2
Q ss_pred ccCCCCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796 51 NNDVHELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELG 100 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~ 100 (307)
...+.+.+.|+||++.+..| +.. +|||.||..|+.+|. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34557788999999999877 555 899999999999883 78999999875
No 32
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.73 E-value=4.4e-09 Score=82.79 Aligned_cols=62 Identities=23% Similarity=0.559 Sum_probs=48.9
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----------ccchhHHHHhhcc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----------IRCLALEKVAESL 114 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----------~~~~~le~~~~~l 114 (307)
..+.+.+.|+||++.+..|+.. +|||+||..|+.++. ..||.||..+.. ..|..+.+++..+
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 3456789999999999999888 999999999998874 479999998753 2345555555543
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1e-08 Score=76.45 Aligned_cols=50 Identities=30% Similarity=0.739 Sum_probs=43.0
Q ss_pred ccCCCCeeeeccccCCCCC----CeeecCCCceechhchhhhc------CCCCCCcccCCc
Q 021796 51 NNDVHELLECPVCLNLMYP----PIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN 101 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~----Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~ 101 (307)
...+.+.+.|+||++.+.. |+.. +|||.||..|+.++. ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4566788999999999998 8776 899999999999883 589999998754
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=70.22 Aligned_cols=45 Identities=29% Similarity=0.750 Sum_probs=38.2
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCC
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTC 95 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~C 95 (307)
..+.+.+.+.|+||++.+.+|+.. +|||+||..|+.++. ..||.|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345667889999999999999876 899999999999882 568877
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2.3e-09 Score=83.73 Aligned_cols=59 Identities=25% Similarity=0.767 Sum_probs=46.0
Q ss_pred CCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCCcccCCc---ccchhHHHHhhc
Q 021796 54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN---IRCLALEKVAES 113 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~---~~~~~le~~~~~ 113 (307)
+.+.+.||||++.+..|+.. +|||.||..|+.++. ..||.||.++.. .++..++++++.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEE 85 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHH
T ss_pred ccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHH
Confidence 45678999999999999876 999999999999874 279999998875 344444444443
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.1e-08 Score=92.04 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=54.1
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
....+.+.||||++++.+||.. +|||+||..|+.++. ..||.|+.++.. .+|..+.+++..+.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 4557889999999999999887 899999999999873 349999999875 68889999888764
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.67 E-value=1.1e-08 Score=75.17 Aligned_cols=51 Identities=27% Similarity=0.740 Sum_probs=40.5
Q ss_pred ccCCCCeeeeccccCCCC--CCe-eecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796 51 NNDVHELLECPVCLNLMY--PPI-YQCPNGHTLCSSCKARVR----TGCPTCRHELGN 101 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~--~Pi-~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~ 101 (307)
...+.+.+.||||++++. ++. ..|.|||.||..|+.++. ..||.||+++..
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 345678899999999984 343 335699999999998873 689999998875
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=3.3e-08 Score=71.61 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=39.6
Q ss_pred CCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 53 DVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
...+...|+||++.+..+ +..-+|||.||..|+.+|. ..||.||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345677999999999877 2333899999999999883 789999998764
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.62 E-value=1.9e-08 Score=85.33 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=54.8
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
..+++.|.||||+++|.+||.. +|||+||..|+.++. ..||.|+.++.. .+|..+.+++..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 5668899999999999999988 899999999999873 359999999875 68889988888764
No 40
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.62 E-value=7.8e-09 Score=73.90 Aligned_cols=48 Identities=27% Similarity=0.714 Sum_probs=40.6
Q ss_pred CCCCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 53 DVHELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
...+.+.|+||++.+..| +.. +|||.||..|+.+|. ..||.||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 346678999999999887 554 899999999998873 789999998864
No 41
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=4.8e-09 Score=76.37 Aligned_cols=48 Identities=25% Similarity=0.651 Sum_probs=41.9
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
..+.+.+.|+||++.+.+|++. +|||. ||..|+.+. ..||.||.++..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC-CCCccCCceecC
Confidence 3446678999999999999887 99999 999999875 899999998865
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.58 E-value=5.5e-08 Score=70.89 Aligned_cols=50 Identities=34% Similarity=0.598 Sum_probs=40.5
Q ss_pred cCCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 52 NDVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
....+.+.|+||++.+..+ +..-+|||.||..|+.+|. ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456678999999999765 3333799999999999883 789999998865
No 43
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.57 E-value=3.9e-09 Score=76.68 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=42.1
Q ss_pred CCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796 53 DVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
.+.+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence 445678999999999999988 99999 999999988 899999998865
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.4e-08 Score=71.25 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=41.2
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
..+.+.+.|+||++.+.. +.. +|||.||..|+.++. ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 455778899999999998 666 899999999999873 789999998764
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=2.1e-08 Score=70.63 Aligned_cols=45 Identities=33% Similarity=0.673 Sum_probs=37.6
Q ss_pred CeeeeccccC-CCCCCe----eecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796 56 ELLECPVCLN-LMYPPI----YQCPNGHTLCSSCKARVR----TGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~-~l~~Pi----~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~ 101 (307)
+.+.||||++ .+..|. .. +|||+||..|+.++. ..||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 888883 34 899999999999882 579999998864
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=9.9e-08 Score=68.79 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=40.7
Q ss_pred cCCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 52 NDVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
.++.....|+||++.+..+ +...+|||.||..|+.+|. ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4556678999999999766 3334799999999999883 789999998765
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.52 E-value=7.9e-08 Score=65.13 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=37.4
Q ss_pred CCeeeeccccCCCCC---CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796 55 HELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG 100 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~ 100 (307)
.+...|+||++.+.. ++..-.|||.||..|+.+|. ..||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 556789999999976 55442399999999999883 78999998763
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.51 E-value=2.2e-08 Score=69.90 Aligned_cols=45 Identities=29% Similarity=0.814 Sum_probs=38.4
Q ss_pred CeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
+.+.|+||++.+..| +.. +|||.||..|+.++. ..||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999999876 555 899999999999874 689999998864
No 49
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=67.67 Aligned_cols=45 Identities=31% Similarity=0.639 Sum_probs=40.1
Q ss_pred CCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
.+...|+||++...++++. +|||. +|..|.... ..||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence 4567899999999999888 99999 999999875 899999998865
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.47 E-value=1.1e-07 Score=67.35 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=38.9
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh---cCCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---RTGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 101 (307)
....|+||++.+..|+..-+|||.||..|+.++ ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999999998555489999999999887 3789999998764
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.47 E-value=8.6e-08 Score=64.89 Aligned_cols=44 Identities=27% Similarity=0.588 Sum_probs=36.5
Q ss_pred CeeeeccccCCCCC----CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796 56 ELLECPVCLNLMYP----PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG 100 (307)
Q Consensus 56 ~~l~CpiC~~~l~~----Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~ 100 (307)
+...|+||++.+.. ++.. +|||.||..|+.++. ..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999865 4444 899999999999884 78999999864
No 52
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=1.7e-07 Score=66.57 Aligned_cols=49 Identities=20% Similarity=0.545 Sum_probs=38.7
Q ss_pred CCCCeeeeccccCCCCC--CeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 53 DVHELLECPVCLNLMYP--PIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~--Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
+......|+||++.+.. ++..-+|||.||..|+.+|. ..||.||.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 34567789999998852 33444899999999999873 789999998764
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-07 Score=69.66 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=38.3
Q ss_pred CCCeeeeccccCCCCC---CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796 54 VHELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG 100 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~ 100 (307)
..+...|+||++.+.. ++.. +|||.||..|+.+|. ..||.||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567899999999876 5445 899999999999884 78999999875
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.9e-07 Score=82.05 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=52.4
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-----CCCCC--CcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPT--CRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~--Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
......+.||||+++|.+||..-.|||+||..|+.++. ..||. |++.+.. .+|..|.++++..+
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 34578899999999999998643799999999999874 36999 9998765 67888888876643
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=2.5e-07 Score=67.94 Aligned_cols=46 Identities=35% Similarity=0.815 Sum_probs=40.8
Q ss_pred CCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796 54 VHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
+.+...|+||++.+..|++. +|||. ||..|..++ ..||.||.++..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 34567899999999999998 99999 999999887 699999998875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.26 E-value=1.9e-07 Score=74.47 Aligned_cols=46 Identities=28% Similarity=0.760 Sum_probs=40.2
Q ss_pred CCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
.+.+.|+||++.+.+| +.. +|||+||..|+.++. ..||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4578999999999888 666 999999999999883 689999998875
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.23 E-value=5.7e-07 Score=70.29 Aligned_cols=45 Identities=18% Similarity=0.454 Sum_probs=36.6
Q ss_pred eeeeccccCCCCCCe-----------------eecCCCceechhchhhhc--------CCCCCCcccCCc
Q 021796 57 LLECPVCLNLMYPPI-----------------YQCPNGHTLCSSCKARVR--------TGCPTCRHELGN 101 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi-----------------~~C~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~ 101 (307)
...|+||++.+..|. ..-+|||.||..|+.+|. ..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997653 133799999999999884 479999998764
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=4.5e-06 Score=61.36 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=36.9
Q ss_pred CeeeeccccCCCCC--------------CeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYP--------------PIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~--------------Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
+...|+||++.+.. ++....|||.|+..|+.+|. ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45579999999976 44443699999999999884 789999998753
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.03 E-value=2.2e-06 Score=80.77 Aligned_cols=46 Identities=30% Similarity=0.697 Sum_probs=40.3
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~ 101 (307)
.....|+||.+.+..|+.. +|||.||..|+.++ ...||.||.++..
T Consensus 330 ~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3457999999999999888 99999999999876 3789999998865
No 60
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.02 E-value=2.5e-06 Score=79.63 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=42.1
Q ss_pred CCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796 53 DVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
.+.+.+.|+||++.+..|++. +|||. ||..|+.++ ..||.||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence 345678999999999999988 99999 999999987 899999998864
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.92 E-value=2.3e-06 Score=68.04 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=39.9
Q ss_pred CCCeeeeccccCCCCCC------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 54 VHELLECPVCLNLMYPP------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~P------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
..+.+.|+||++.+..| +...+|||.||..|+.+|. ..||.||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35678899999999876 1344999999999999883 899999998864
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.85 E-value=5.6e-06 Score=58.06 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=38.2
Q ss_pred CeeeeccccCCCCCCeee-cCCCce-echhchhhhc---CCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYPPIYQ-CPNGHT-LCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~-C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
+...|+||++...++++. -+|||. +|..|..++. ..||.||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999999753 379999 8999998874 579999998764
No 63
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1e-05 Score=61.41 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=44.7
Q ss_pred ccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhc
Q 021796 115 ELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKN 170 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~ 170 (307)
.+.||| .|...+...++.+|...|+...+.|++...+|.+++.+.+|..|++.
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 678885 58778888888888888888888888888888888888888888874
No 64
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=8.6e-06 Score=61.80 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=44.9
Q ss_pred CCC-CCcccCCcccchhHHHHhhccccccccccCCcceeecccchHHHHHhCCCcCccCC
Q 021796 91 GCP-TCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCP 149 (307)
Q Consensus 91 ~CP-~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp 149 (307)
.|| .|...+-...-.....+.....++|+|+.+||+.++.+.++.+||+.|+-..+.|.
T Consensus 39 ~CP~~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 477 67553322222333455778899999999999999999999999999998887774
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.77 E-value=9.4e-06 Score=56.72 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=37.1
Q ss_pred eeeeccccCCCCCCee-ecCCCce-echhchhhhc---CCCCCCcccCCc
Q 021796 57 LLECPVCLNLMYPPIY-QCPNGHT-LCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~-~C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
...|+||++...++++ .-+|||. +|..|..++. ..||.||+++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 4579999999998853 2389998 9999998874 489999998864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=5.4e-06 Score=62.56 Aligned_cols=43 Identities=19% Similarity=0.466 Sum_probs=33.9
Q ss_pred CeeeeccccCCCCCCeee--cCCCceechhchhhhc-----------CCCCC--Cccc
Q 021796 56 ELLECPVCLNLMYPPIYQ--CPNGHTLCSSCKARVR-----------TGCPT--CRHE 98 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~--C~cGH~~C~~C~~~~~-----------~~CP~--Cr~~ 98 (307)
+.+.|+||++.+..|... -.|||.||..|+.+.. ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999888543 2599999999987652 26888 8877
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.64 E-value=2.7e-05 Score=60.33 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=36.6
Q ss_pred eeeeccccCCCCCC-----------------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 57 LLECPVCLNLMYPP-----------------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 57 ~l~CpiC~~~l~~P-----------------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
.-.|+||++.+..+ +..-+|||.|+..|+.+|. ..||+||.++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 45799999998765 3334799999999999984 789999998654
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.62 E-value=3.2e-05 Score=53.73 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=38.6
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
.+.|||+++++.+|+..-.+||+|+..|+.+|. ..||.+++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999997653699999999999984 679999998864
No 69
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.48 E-value=3.7e-05 Score=55.47 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=46.8
Q ss_pred hccccccccccCCcceeecccchHHHHH-hCCCcCccCCCCCCCCccccChhhHHHHhhccCC
Q 021796 112 ESLELPCRYQIWGCQDIFPYYSKLKHEK-NCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHK 173 (307)
Q Consensus 112 ~~l~~~C~n~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~ 173 (307)
....+.|++ ||...+.+.++..|+. +|+++++.|++ |+....+.+|..|. ....
T Consensus 13 ~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~-~~Cp 67 (76)
T 2yuc_A 13 SFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHE-GMCP 67 (76)
T ss_dssp CCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTT-TSCT
T ss_pred CCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHH-hHCC
Confidence 346788986 7999999999999988 89999999998 88999999999998 3444
No 70
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.38 E-value=8e-05 Score=62.13 Aligned_cols=100 Identities=20% Similarity=0.381 Sum_probs=68.3
Q ss_pred eeccccCCCCCC-eeecCCCceechhchhhhcCCCC--CCcccCCcccchhHHHHhhccccccccccCCcceeecccchH
Q 021796 59 ECPVCLNLMYPP-IYQCPNGHTLCSSCKARVRTGCP--TCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKL 135 (307)
Q Consensus 59 ~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~~~~CP--~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~ 135 (307)
.||+|...+... ++. . .+-..=+..+...|| .|...+....-...++...-..++|+ ||.+.+.+.++.
T Consensus 55 ~CP~Cr~~~~~~~~~~--~--~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~ 126 (170)
T 3hcs_A 55 KCPVDNEILLENQLFP--D--NFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHIN 126 (170)
T ss_dssp BCTTTCCBCCGGGCEE--C--HHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHH
T ss_pred CCCCCccCcchhhhhh--h--HHHHHHHhhcccCCCCCCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHH
Confidence 899998877643 121 0 110011112235675 56655443333344455566678887 799999999999
Q ss_pred HHH-HhCCCcCccCCCCCCCCccccChhhHHHHhhc
Q 021796 136 KHE-KNCNYRPYNCPYAGAECSVTGDIPLLVRHLKN 170 (307)
Q Consensus 136 ~He-~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~ 170 (307)
.|+ ..|++++..|++ |+......+|..|...
T Consensus 127 ~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 127 IHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN 158 (170)
T ss_dssp HHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred HHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence 998 599999999996 9899999999999854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.31 E-value=0.00016 Score=54.77 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=34.8
Q ss_pred eeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCcc
Q 021796 59 ECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGNI 102 (307)
Q Consensus 59 ~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~~ 102 (307)
-|+.|..+++.=...=+|.|.||..|...+ .+.||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 589999988754333389999999999765 26899999998763
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.30 E-value=3.4e-05 Score=60.75 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=0.4
Q ss_pred eeeeccccCCCCCCe-----------------eecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 57 LLECPVCLNLMYPPI-----------------YQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi-----------------~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
+-.|+||++.+..+- ...+|+|.|+..|+.+|. ..||.||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 357999999997642 223799999999999984 789999998643
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0018 Score=47.23 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=35.2
Q ss_pred CCeeeeccccCCC--CCCeeecCCC-----ceechhchhhhc-----CCCCCCcccCCc
Q 021796 55 HELLECPVCLNLM--YPPIYQCPNG-----HTLCSSCKARVR-----TGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l--~~Pi~~C~cG-----H~~C~~C~~~~~-----~~CP~Cr~~~~~ 101 (307)
.+...|+||++.+ ..++.. +|. |.|...|+.+|. ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3455899999876 356544 554 999999999994 489999998754
No 74
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.51 E-value=0.00034 Score=50.17 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=42.7
Q ss_pred cccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhcc
Q 021796 114 LELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKND 171 (307)
Q Consensus 114 l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~ 171 (307)
-.+.|++ |...+...++..|+..|..+|+.|+. |+....+.+|..|++..
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c 65 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVC 65 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHB
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHc
Confidence 3567775 88999999999999999999999997 77777889999998753
No 75
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.49 E-value=0.00073 Score=48.50 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.0
Q ss_pred HhhccccccccccCCcceeecccchHHHHHhCCCcCccCCC
Q 021796 110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPY 150 (307)
Q Consensus 110 ~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~ 150 (307)
......+.|++ |...+.+.++..|+++|+..++.||.
T Consensus 39 ~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~~ 75 (76)
T 2yuc_A 39 DCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPSS 75 (76)
T ss_dssp SCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCSC
T ss_pred hCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCCC
Confidence 45566788988 99999999999999999999999986
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.0074 Score=43.30 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=37.6
Q ss_pred CCeeeeccccCCCCCCeeec-CCCceechhchhhhc-----CCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQC-PNGHTLCSSCKARVR-----TGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C-~cGH~~C~~C~~~~~-----~~CP~Cr~~~~~ 101 (307)
...-.|.||.+++.+- ..| .|+|.|=..|+.+|. ..||.|+.+...
T Consensus 13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4556899999999854 567 699999999999883 679999998654
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.10 E-value=0.002 Score=59.47 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=39.0
Q ss_pred CCeeeeccccCCCCC----Ceeec---CCCceechhchhhhc--------------CCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYP----PIYQC---PNGHTLCSSCKARVR--------------TGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~----Pi~~C---~cGH~~C~~C~~~~~--------------~~CP~Cr~~~~~ 101 (307)
....+|+||+..+.+ |-..| .|||.|-..|+.+|. +.||+|+.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999999876 76777 499999999999883 469999998763
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.34 E-value=0.02 Score=43.11 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=27.3
Q ss_pred CeeeeccccC-CCCCCeeec-CCCceechhchhhh
Q 021796 56 ELLECPVCLN-LMYPPIYQC-PNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~-~l~~Pi~~C-~cGH~~C~~C~~~~ 88 (307)
+.+.|++|.+ +..+|+..| .|+|.||..|+...
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4578999996 478888865 69999999999873
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.94 E-value=0.64 Score=33.45 Aligned_cols=72 Identities=22% Similarity=0.467 Sum_probs=50.8
Q ss_pred CCeeeeccccCCCCCC-eeecC--CCceechhchhhhcCCCCCCcccCCcccchhHHHHhhccccccccccCCcceeecc
Q 021796 55 HELLECPVCLNLMYPP-IYQCP--NGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPY 131 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~P-i~~C~--cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~ 131 (307)
...|.|.+|.+-|.+- ..||+ -+|.||..|.... +++.-....|+||- |
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s------------------Ik~q~~~~EvyCPS---G------- 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES------------------IKAQGATGEVYCPS---G------- 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH------------------HHHHHSSSCCCCTT---S-------
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHH------------------HHhcCCCCcEECCC---C-------
Confidence 5678999999999876 66886 5899999996543 23344556778874 2
Q ss_pred cchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHh
Q 021796 132 YSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHL 168 (307)
Q Consensus 132 ~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl 168 (307)
.+||..|..=.|.....++..=|
T Consensus 65 --------------~kCpL~gS~~PWAFmqgEIatIL 87 (93)
T 2cs3_A 65 --------------EKCPLVGSNVPWAFMQGEIATIL 87 (93)
T ss_dssp --------------SCCBCSSSSSBCCCCHHHHHHHH
T ss_pred --------------CccccCCCcCchHHHhhHHHHHh
Confidence 35777777777777766665443
No 80
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.83 E-value=0.12 Score=34.86 Aligned_cols=51 Identities=31% Similarity=0.645 Sum_probs=37.0
Q ss_pred ccccccccCCcceeecccchHHHHHhCCCcCccCC-CCCCCCcccc-ChhhHHHHhhccCC
Q 021796 115 ELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCP-YAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp-~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
.+.|+. |...+....+..|+..+.-+|+.|+ . |+... .+..|..|++.+..
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc~ 62 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSCN 62 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTSS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhcc
Confidence 455654 7777776778899877888999998 5 66553 45689999876444
No 81
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.19 E-value=0.12 Score=36.49 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCCCCcccCCcccchhHHHHhhccccccccccCCcceeecccchHHHHHhCCCcC
Q 021796 90 TGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRP 145 (307)
Q Consensus 90 ~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p 145 (307)
..|+.|...+....-...+.......+.|++ |...+.+.++..|+..|+-.+
T Consensus 18 ~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~~~ 69 (75)
T 2d9k_A 18 AVCQHCDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCGREG 69 (75)
T ss_dssp EECSSSCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBTTBS
T ss_pred cCCcccChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHccCCc
Confidence 4677887776532223334567778899997 999999999999999998654
No 82
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.94 E-value=0.15 Score=34.75 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=32.7
Q ss_pred CeeeeccccCCCCCCe-eecCCCc---eechhchhhhc-----CCCCCCcccCC
Q 021796 56 ELLECPVCLNLMYPPI-YQCPNGH---TLCSSCKARVR-----TGCPTCRHELG 100 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi-~~C~cGH---~~C~~C~~~~~-----~~CP~Cr~~~~ 100 (307)
+.-.|.||++...+|+ .-|.|.+ .|=..|+.+|. ..||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999987655553 3356665 77788999883 67999998764
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=89.99 E-value=0.14 Score=39.54 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHhhccccccccccCCcceeecccchH---HHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCC
Q 021796 107 LEKVAESLELPCRYQIWGCQDIFPYYSKL---KHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVD 175 (307)
Q Consensus 107 le~~~~~l~~~C~n~~~GC~~~~~~~~~~---~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~ 175 (307)
+.+.+..-...||. |...+...++. .=++.=.-..+.||+.| |+|.+.+.++.+|++..+...
T Consensus 45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~g--C~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEG--CLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTT--CCCEEEGGGSGGGTSSSCC--
T ss_pred HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCC--CCCEEeeHHHHHHHHHchhhh
Confidence 44444444447886 77666554321 11122223678899854 999999999999998877743
No 84
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.72 E-value=0.58 Score=33.44 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=35.3
Q ss_pred ccccccccCCcceeecc-cchHHHHHhCCC---cCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKNCNY---RPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~C~~---~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
.+.|+. |...+.. ..+..|...-.- .++.|+. |+... ....|..|++..|..
T Consensus 35 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 35 PYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp SEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 355654 6666654 356678765433 7899987 66554 457999999988874
No 85
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.49 E-value=0.45 Score=35.12 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=26.1
Q ss_pred chHHHHHhCCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 133 SKLKHEKNCNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 133 ~~~~He~~C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
.+..|...-.-+|+.|+. |+.... ...|..|++..|..
T Consensus 57 ~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 57 LKQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp HHHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred HHHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence 345565444557888986 666554 57899999877764
No 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.16 E-value=0.37 Score=36.81 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=47.0
Q ss_pred CCCCCCcccCCc---ccc------hhHHHHhhccccccccccCCcceeecccchH----HHHHhCCCcCccCCCCCCCCc
Q 021796 90 TGCPTCRHELGN---IRC------LALEKVAESLELPCRYQIWGCQDIFPYYSKL----KHEKNCNYRPYNCPYAGAECS 156 (307)
Q Consensus 90 ~~CP~Cr~~~~~---~~~------~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~----~He~~C~~~p~~Cp~~g~~C~ 156 (307)
..||.|...+.. .++ .-+.+.+......||. |...+...++. .-.+.=.-..+.||+.| |+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~g--C~ 97 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQD--CN 97 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTT--CC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCC--Cc
Confidence 568888776543 111 2344555544567886 77766554422 11222233567899864 99
Q ss_pred cccChhhHHHHhhc
Q 021796 157 VTGDIPLLVRHLKN 170 (307)
Q Consensus 157 ~~g~~~~l~~Hl~~ 170 (307)
|.+.+.++..|++.
T Consensus 98 ~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 98 EEVSLEKYNHHVSS 111 (116)
T ss_dssp CEEEHHHHHHHHHT
T ss_pred chhhHhHHHHHHHH
Confidence 99999999999975
No 87
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.86 E-value=1 Score=33.66 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCcccchhHHHH-----hhccccccccccCCcceee
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKV-----AESLELPCRYQIWGCQDIF 129 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~le~~-----~~~l~~~C~n~~~GC~~~~ 129 (307)
...+.|++|...+...... -.|.- .-.......|+.|...+.....+..-.. .....+.|+. |...+
T Consensus 5 ~~~~~C~~C~~~f~~~~~l--~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f 76 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSKYYL--KVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF 76 (124)
T ss_dssp CSSCCCTTTCCCCSSHHHH--HHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred CCCCCCCCCCCcCCCHHHH--HHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence 3457899999888765211 12321 0000112679999887765433322111 1234567775 88877
Q ss_pred ccc-chHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 130 PYY-SKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 130 ~~~-~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
... .+..|... -.-.|+.|+. |+.... ...|..|++..|..
T Consensus 77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 764 56788764 4567899987 666544 57999999988874
No 88
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.01 E-value=0.47 Score=32.22 Aligned_cols=37 Identities=24% Similarity=0.714 Sum_probs=28.6
Q ss_pred eeccccCCCCCC-eeecC-CCceechhchh---hhcCCCCCC
Q 021796 59 ECPVCLNLMYPP-IYQCP-NGHTLCSSCKA---RVRTGCPTC 95 (307)
Q Consensus 59 ~CpiC~~~l~~P-i~~C~-cGH~~C~~C~~---~~~~~CP~C 95 (307)
.|-.|...+.+. +++|+ |++.||..|-. +.+..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 488999988655 47885 99999999943 234789988
No 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.79 E-value=2 Score=30.49 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=34.3
Q ss_pred ccccccccCCcceeecc-cchHHHHHhC-CCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKNC-NYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~C-~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
.+.|+. |...+.. ..+..|...- .-.++.|+. |+... ....|..|++..|..
T Consensus 36 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 36 PYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp SEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred CEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence 355554 6666654 3566787643 456899987 66554 457999999876654
No 90
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.36 E-value=0.81 Score=47.63 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=53.4
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCC-ceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNG-HTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE 115 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cG-H~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~ 115 (307)
.+.++.|.|||=+++|++||.. +.| +++=...+.+|. ..||.-|+++.. .+|.++...+..+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 4567899999999999999988 676 689999999884 779999999876 68999988887764
No 91
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.20 E-value=1 Score=39.31 Aligned_cols=45 Identities=22% Similarity=0.549 Sum_probs=36.8
Q ss_pred CeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~~ 101 (307)
....|.+|.+++..- ..|+ |++.|=..|+.++. ..||.|+.+...
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 477899999999865 5676 89999999998862 589999987654
No 92
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=83.18 E-value=0.41 Score=38.30 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.2
Q ss_pred CcCccCCCCCCCCccccChhhHHH-HhhccC
Q 021796 143 YRPYNCPYAGAECSVTGDIPLLVR-HLKNDH 172 (307)
Q Consensus 143 ~~p~~Cp~~g~~C~~~g~~~~l~~-Hl~~~H 172 (307)
-..+.||+. +|+|++.+.++.+ |+...+
T Consensus 102 ~L~v~Cpn~--GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 102 SLPAVCPSD--GCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp TSEEECCST--TCCCEEEHHHHHHHTTTCCH
T ss_pred ccccccCCC--CCCCEeEHHHHHHHHHHHhH
Confidence 567899985 4999999999998 987644
No 93
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.88 E-value=3.2 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=29.7
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCccc
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHE 98 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~ 98 (307)
.-.|..|..-+.-+.++|.||.+||..=+..-.-.|+..-+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~ 56 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE 56 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred CCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence 357999999765545899999999987654333567655443
No 94
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.40 E-value=6 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRH 97 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~ 97 (307)
...-.|..|...+.-+-+.|.||.+||+.=+..-.-.|+..-+
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchh
Confidence 3345799999877655589999999998665443355765444
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.90 E-value=4.2 Score=30.13 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=37.4
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN 101 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~ 101 (307)
..+.--+.|-.|-...+. .+.| ..|-+|..|+..+. ..||.|..++-.
T Consensus 23 ~s~~G~~nCKsCWf~~k~-LV~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG-LVEC-NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS-EEEC-SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccccCcccChhhccccCC-eeee-cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 345667789999887775 3554 68999999998774 789999998754
No 96
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.82 E-value=4.2 Score=28.71 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=28.2
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcc
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRH 97 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~ 97 (307)
.-.|..|..-+.-..+.|.||..||+.=+..-...|+..-+
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhh
Confidence 34799999865433488999999998665433356765433
No 97
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=78.27 E-value=4.3 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=24.1
Q ss_pred chHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 133 SKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 133 ~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
.+..|... -.-.++.|+. |+... ....|..|++..+..
T Consensus 60 ~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 60 HLRDHRYIHSKEKPFKCQE----CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp HHHHHGGGSCCCCTTSCSS----SCCCCSSHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCCeECCC----cCCcccCHHHHHHHHHHhCCC
Confidence 34455443 2346789987 55554 457899998765553
No 98
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.20 E-value=6.9 Score=28.41 Aligned_cols=41 Identities=20% Similarity=0.445 Sum_probs=29.1
Q ss_pred CeeeeccccCCCCC--CeeecCCCceechhchhhhcCCCCCCcc
Q 021796 56 ELLECPVCLNLMYP--PIYQCPNGHTLCSSCKARVRTGCPTCRH 97 (307)
Q Consensus 56 ~~l~CpiC~~~l~~--Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~ 97 (307)
..-.|..|..-+.- | +.|.||.+||+.=+..-.-.|+..-+
T Consensus 24 ~~~rC~~C~kkvgl~~~-f~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred cCccchhhCCeecccCC-eEcCCCCEecccCCCccCCCCcchhh
Confidence 34579999986643 5 78999999998765443456775433
No 99
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=77.76 E-value=3.7 Score=32.00 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCeeeeccccCCCCCCeeecCCCceechhchhh-------hcCCCCCCcccCCcccchhH--HHHhhccccccccccCC
Q 021796 54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKAR-------VRTGCPTCRHELGNIRCLAL--EKVAESLELPCRYQIWG 124 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~-------~~~~CP~Cr~~~~~~~~~~l--e~~~~~l~~~C~n~~~G 124 (307)
-...+.|++|...+...... -.|..-..-... ....|+.|...+.....+.. ..-...-.+.|+. .+
T Consensus 22 ~~~~~~C~~C~~~f~~~~~L--~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~ 97 (155)
T 2rpc_A 22 AQLSRPKKSCDRTFSTMHEL--VTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--PG 97 (155)
T ss_dssp TCCSSSCCCCCCCBSSHHHH--HHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--TT
T ss_pred hhcccccccCCcccCCHHHH--HHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--CC
Confidence 35678899999988765211 012110000000 01469999888765332211 1112234567764 36
Q ss_pred cceeecc-cchHHHHHhC-CCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 125 CQDIFPY-YSKLKHEKNC-NYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~C-~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
|...+.. ..+..|...- .-.++.|+.. .|+.... ...|..|++..+..
T Consensus 98 C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~ 148 (155)
T 2rpc_A 98 CGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHTSD 148 (155)
T ss_dssp TCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTTSC
T ss_pred CCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhcCC
Confidence 8887765 4667897743 3468999863 2666554 57899998765543
No 100
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=76.93 E-value=2.9 Score=28.50 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=41.9
Q ss_pred CCCCCcccCCcccchh--HHHHhhccccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHH
Q 021796 91 GCPTCRHELGNIRCLA--LEKVAESLELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLV 165 (307)
Q Consensus 91 ~CP~Cr~~~~~~~~~~--le~~~~~l~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~ 165 (307)
.|+.|...+.....+. +..-...-.+.|+. |...+.. ..+..|... -.-.++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 4677766655432221 11112234466665 7766654 355677653 3457889987 65554 457888
Q ss_pred HHhhcc
Q 021796 166 RHLKND 171 (307)
Q Consensus 166 ~Hl~~~ 171 (307)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
No 101
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.40 E-value=2.1 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=23.6
Q ss_pred eeeeccccCCCC----CCeeecC-CCceechhchhhh
Q 021796 57 LLECPVCLNLMY----PPIYQCP-NGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~----~Pi~~C~-cGH~~C~~C~~~~ 88 (307)
..-||-|...+. .+..+|+ ||+.||..|...+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 334998887652 2346786 9999999998776
No 102
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.88 E-value=7.3 Score=26.69 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=29.0
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcc
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRH 97 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~ 97 (307)
.-.|..|..-+.-+-++|.||.+||+.=+..-.-.|+..-+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred CCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhh
Confidence 35799999976554589999999998665433355765433
No 103
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.70 E-value=4.6 Score=29.89 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCCCCCcccCCcccchhH--HHHhhccccccccccCCcceeecc-cchHHHHHh----CCCcCccCCCCCCCCcccc-Ch
Q 021796 90 TGCPTCRHELGNIRCLAL--EKVAESLELPCRYQIWGCQDIFPY-YSKLKHEKN----CNYRPYNCPYAGAECSVTG-DI 161 (307)
Q Consensus 90 ~~CP~Cr~~~~~~~~~~l--e~~~~~l~~~C~n~~~GC~~~~~~-~~~~~He~~----C~~~p~~Cp~~g~~C~~~g-~~ 161 (307)
..|+.|...+.....+.. ..-...-.+.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 579999887765333221 1112234577876 8777655 467789764 3456889987 66654 45
Q ss_pred hhHHHHhhccCCCC
Q 021796 162 PLLVRHLKNDHKVD 175 (307)
Q Consensus 162 ~~l~~Hl~~~H~~~ 175 (307)
..|..|++..+...
T Consensus 80 ~~l~~H~~~h~~~~ 93 (124)
T 2dlq_A 80 MELRLHMVSHTGEM 93 (124)
T ss_dssp HHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcCCCC
Confidence 78999998766543
No 104
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=74.63 E-value=3 Score=27.31 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=35.0
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-C--CCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-C--NYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C--~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
.+.|+. |...+.. ..+..|... - .-.|+.|+. |+... ....|..|++..|.
T Consensus 10 ~~~C~~----C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 10 TYRCKV----CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp EEECTT----TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred ceECCC----CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 345554 6666654 456678765 3 568899987 65554 45789999998885
No 105
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=73.88 E-value=1.9 Score=31.67 Aligned_cols=45 Identities=20% Similarity=0.582 Sum_probs=35.2
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh-cCCCCCCcccCC
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHELG 100 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-~~~CP~Cr~~~~ 100 (307)
+=|.|..|...|....+.-..|.++|..|..+. ..+|..|.++|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 457899999999754332268999999998776 378999999876
No 106
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=73.52 E-value=1.9 Score=30.82 Aligned_cols=39 Identities=23% Similarity=0.544 Sum_probs=28.8
Q ss_pred eeeecc--ccCCCC----CCeeec------CCCceechhchhhhcCCCCCCcc
Q 021796 57 LLECPV--CLNLMY----PPIYQC------PNGHTLCSSCKARVRTGCPTCRH 97 (307)
Q Consensus 57 ~l~Cpi--C~~~l~----~Pi~~C------~cGH~~C~~C~~~~~~~CP~Cr~ 97 (307)
..-||. |...+. .+..+| .||+.||..|...++. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 556888 887763 234689 6999999999988864 45644
No 107
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=72.80 E-value=3.9 Score=27.93 Aligned_cols=75 Identities=24% Similarity=0.451 Sum_probs=41.9
Q ss_pred CCCcccCCcccchhH-HHH-hhccccccccccCCcceeecc-cchHHHHHhCCCcCccCCCCCCCCccccC-hhhHHHHh
Q 021796 93 PTCRHELGNIRCLAL-EKV-AESLELPCRYQIWGCQDIFPY-YSKLKHEKNCNYRPYNCPYAGAECSVTGD-IPLLVRHL 168 (307)
Q Consensus 93 P~Cr~~~~~~~~~~l-e~~-~~~l~~~C~n~~~GC~~~~~~-~~~~~He~~C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl 168 (307)
+.|...+.....+.. .+. .....+.|+. .||...+.. ..+..|++.-.- +.|+.++ .|+.... ...|..|+
T Consensus 7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l~~H~ 81 (85)
T 2j7j_A 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLYLKHV 81 (85)
T ss_dssp TTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHHHHHH
Confidence 667666654322211 111 2234566764 468777765 455677654222 7787632 3666654 47888888
Q ss_pred hccC
Q 021796 169 KNDH 172 (307)
Q Consensus 169 ~~~H 172 (307)
+..|
T Consensus 82 ~~hh 85 (85)
T 2j7j_A 82 AECH 85 (85)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7665
No 108
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.79 E-value=0.68 Score=34.51 Aligned_cols=38 Identities=37% Similarity=0.933 Sum_probs=28.7
Q ss_pred eeeccccCCCCCCeeecCCCceechhchhhh--cCCCCCCcccCC
Q 021796 58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARV--RTGCPTCRHELG 100 (307)
Q Consensus 58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~--~~~CP~Cr~~~~ 100 (307)
..||.|...|.. .-|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 799999987752 24566688886654 378999999875
No 109
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.35 E-value=4.4 Score=27.50 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=36.1
Q ss_pred ccccccccCCcceeecc-cchHHHHH-hCC--CcCccCCCCCCCCccccC-hhhHHHHhhccCCCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEK-NCN--YRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKVD 175 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~-~C~--~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~~ 175 (307)
.+.|+. |...+.. ..+..|+. .-. -.++.|+. |+.... ...|..|++..|...
T Consensus 15 ~~~C~~----C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 15 PYECYI----CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp SEECTT----TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCCS
T ss_pred CeECCC----cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCCC
Confidence 355654 6666655 45667865 333 26899987 666554 579999999999753
No 110
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=70.69 E-value=6.2 Score=25.13 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=31.0
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCCCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKVD 175 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~~ 175 (307)
|...+.. ..+..|... -.-.|+.|+. |+... ....|..|++..|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcCCc
Confidence 5554443 345677654 3346899987 55554 4579999998888754
No 111
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.39 E-value=4.4 Score=29.51 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=39.3
Q ss_pred hccccccccccCCcceee--cccchHHHHHhCCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 112 ESLELPCRYQIWGCQDIF--PYYSKLKHEKNCNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 112 ~~l~~~C~n~~~GC~~~~--~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
..-.+.|+. |...+ ....|..|.....-+|+.|+. |+.... ...|..|++..|..
T Consensus 31 ~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 31 DKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTCC
T ss_pred CCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcCC
Confidence 445677876 88887 456778897755678999987 655543 57899996667763
No 112
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=68.81 E-value=9.4 Score=29.44 Aligned_cols=11 Identities=9% Similarity=0.002 Sum_probs=5.4
Q ss_pred eeeccccCCCC
Q 021796 58 LECPVCLNLMY 68 (307)
Q Consensus 58 l~CpiC~~~l~ 68 (307)
..|++|...+.
T Consensus 4 ~~C~~C~~~f~ 14 (155)
T 2gli_A 4 CRWDGCSQEFD 14 (155)
T ss_dssp CCBTTCCCBCS
T ss_pred CCcCCCccccC
Confidence 34555555444
No 113
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.89 E-value=2.8 Score=30.90 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=21.0
Q ss_pred CcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 143 YRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 143 ~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
-+|+.|+. |+.... ...|..|++..|..
T Consensus 78 ~~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 78 QKVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CSSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred CcceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 46889987 655544 57999999988764
No 114
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=67.62 E-value=3.8 Score=31.38 Aligned_cols=46 Identities=20% Similarity=0.511 Sum_probs=36.2
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh-cCCCCCCcccCCc
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-~~~CP~Cr~~~~~ 101 (307)
+=|.|..|...|..--+.-..|..+|..|..+. ..+|..|.++|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 458899999999764332278999999998875 4789999998873
No 115
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.47 E-value=1.8 Score=28.80 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=23.9
Q ss_pred HhCCCcCccCCCCCCCCccccChhhHHHHhhccCC
Q 021796 139 KNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHK 173 (307)
Q Consensus 139 ~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~ 173 (307)
+.|..+|+.|+. |+.......|..|++. +.
T Consensus 4 ~~C~~~~~~C~~----C~k~f~~~~L~~H~~~-~~ 33 (66)
T 2eod_A 4 GSSGKRTQPCTY----CTKEFVFDTIQSHQYQ-CP 33 (66)
T ss_dssp SCCCCCEEECSS----SCCEEEHHHHHHHHHH-CS
T ss_pred ccCCCCCeeccc----cCCccCHHHHHHHHHH-cC
Confidence 479999999997 6655558899999887 44
No 116
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=64.83 E-value=3.5 Score=25.99 Aligned_cols=45 Identities=29% Similarity=0.617 Sum_probs=27.2
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
|...+.. ..+..|... -.-+|+.|+. |+... ....|..|++..|.
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 4444333 234556543 2346889987 66554 45789999988774
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.79 E-value=3.7 Score=31.45 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=35.1
Q ss_pred CeeeeccccCCCC---CCeeecCCCceechhchhhhc-C--CCCCCcccCCc
Q 021796 56 ELLECPVCLNLMY---PPIYQCPNGHTLCSSCKARVR-T--GCPTCRHELGN 101 (307)
Q Consensus 56 ~~l~CpiC~~~l~---~Pi~~C~cGH~~C~~C~~~~~-~--~CP~Cr~~~~~ 101 (307)
+=|.|..|..+|. ...+. ..|..+|..|..+.. . .|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3478999999996 34444 689999999987763 4 79999998874
No 118
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=64.12 E-value=5.3 Score=31.01 Aligned_cols=77 Identities=27% Similarity=0.594 Sum_probs=45.4
Q ss_pred CCCCCcccCCcccchhHH-HH-hhccccccccccCCcceeeccc-chHHHHHhC-CCcCccCCCCCCCCcccc-ChhhHH
Q 021796 91 GCPTCRHELGNIRCLALE-KV-AESLELPCRYQIWGCQDIFPYY-SKLKHEKNC-NYRPYNCPYAGAECSVTG-DIPLLV 165 (307)
Q Consensus 91 ~CP~Cr~~~~~~~~~~le-~~-~~~l~~~C~n~~~GC~~~~~~~-~~~~He~~C-~~~p~~Cp~~g~~C~~~g-~~~~l~ 165 (307)
.|+.|...+....++..- ++ ...-.+.|+. |...+... .|..|+..= .-+|+.|+. |+... ....|.
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~ 95 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMS 95 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHH
Confidence 466666655543222211 11 1123456664 77766654 566776542 346899987 66554 457999
Q ss_pred HHhhccCCCC
Q 021796 166 RHLKNDHKVD 175 (307)
Q Consensus 166 ~Hl~~~H~~~ 175 (307)
.|++..|...
T Consensus 96 ~H~~~hh~~~ 105 (133)
T 2lt7_A 96 SHIKSVHSQD 105 (133)
T ss_dssp HHHHHHTCCC
T ss_pred HHhHHhcCCC
Confidence 9999988753
No 119
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=63.80 E-value=4.1 Score=28.75 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=22.8
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
+||.|+..+ |+.... ...|..|++..|..
T Consensus 26 KPYkC~~~~--CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQG--CFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCSTT--CCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCCC--cChhHcCHHHHHHHhhhhCCC
Confidence 799998754 887766 47999999877863
No 120
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.71 E-value=4.9 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=31.6
Q ss_pred cceeecc-cchHHHHHhC----CCcCccCCCCCCCCccccC-hhhHHHHhhccCCCC
Q 021796 125 CQDIFPY-YSKLKHEKNC----NYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKVD 175 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~C----~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~~ 175 (307)
|...+.. ..+..|++.- .-.++.|+. |+.... ...|..|++..|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 5555544 3455665432 257899987 666554 579999999999854
No 121
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=63.64 E-value=0.59 Score=33.17 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCCCCcccCCcccchhH-HH-HhhccccccccccCCcceeecc-cchHHHHHhCCCcCccCCCCCCCCcccc-ChhhHHH
Q 021796 91 GCPTCRHELGNIRCLAL-EK-VAESLELPCRYQIWGCQDIFPY-YSKLKHEKNCNYRPYNCPYAGAECSVTG-DIPLLVR 166 (307)
Q Consensus 91 ~CP~Cr~~~~~~~~~~l-e~-~~~~l~~~C~n~~~GC~~~~~~-~~~~~He~~C~~~p~~Cp~~g~~C~~~g-~~~~l~~ 166 (307)
.|+.|...+.....+.. .+ -...-.+.|+. |...+.. ..+..|...---.++.|+. |+... ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 46677666554322211 11 12233466665 7666655 4566776654446777775 65544 3467888
Q ss_pred HhhccCC
Q 021796 167 HLKNDHK 173 (307)
Q Consensus 167 Hl~~~H~ 173 (307)
|++..|.
T Consensus 77 H~~~~h~ 83 (88)
T 1llm_C 77 EVARLKK 83 (88)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=63.24 E-value=10 Score=26.14 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=33.4
Q ss_pred cccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 114 LELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 114 l~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
-.+.|+. |...+.. ..+..|... -.-.++.|+. |+... ....|..|++..+.
T Consensus 33 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H~~ 87 (90)
T 1a1h_A 33 KPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHTKIHLR 87 (90)
T ss_dssp CCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHGGGGC
T ss_pred CCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHHHHHHHHHhcc
Confidence 4466665 7666655 345677653 3457889987 65554 45789999886543
No 123
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=62.90 E-value=6.2 Score=28.69 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=33.8
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
.+.|+. |...+.. ..+..|... -.-.++.|+. |+.... ...|..|++..|.
T Consensus 37 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 37 PYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp SEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHH
T ss_pred CccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHccc
Confidence 455654 6665554 345677654 2346889987 665544 5789999988776
No 124
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.55 E-value=7.3 Score=26.83 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=32.7
Q ss_pred CeeeeccccCCCCC-CeeecCCCceech-hchhhh-cCCCCCCcccC
Q 021796 56 ELLECPVCLNLMYP-PIYQCPNGHTLCS-SCKARV-RTGCPTCRHEL 99 (307)
Q Consensus 56 ~~l~CpiC~~~l~~-Pi~~C~cGH~~C~-~C~~~~-~~~CP~Cr~~~ 99 (307)
+=|.|..|...|.. +.+. ..|.++|. .|..+. ..+|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAE-HEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEE-ETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceEC-cCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 45789999999875 4455 78999999 698765 37788887654
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.40 E-value=6.5 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=22.1
Q ss_pred eeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 58 LECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 58 l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
-.|.+|...|..- -..| .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3799999987532 2456 4999999999653
No 126
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=61.89 E-value=7.9 Score=31.22 Aligned_cols=77 Identities=19% Similarity=0.401 Sum_probs=44.6
Q ss_pred CCCCCCcccCCcccchhH--HHHhhccccccccccCCcceeeccc-chHHHHHh-CCCcCccCCCCCCCCccccC-hhhH
Q 021796 90 TGCPTCRHELGNIRCLAL--EKVAESLELPCRYQIWGCQDIFPYY-SKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLL 164 (307)
Q Consensus 90 ~~CP~Cr~~~~~~~~~~l--e~~~~~l~~~C~n~~~GC~~~~~~~-~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l 164 (307)
..|+.|...+.....+.. ..-...-.+.|+. |...+... .+..|... -.-.++.|+. |+.... ...|
T Consensus 78 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L 149 (190)
T 2i13_A 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNL 149 (190)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHH
T ss_pred ccCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHH
Confidence 458888777665332211 1112234566765 77766554 46677653 3456788876 555543 4678
Q ss_pred HHHhhccCCC
Q 021796 165 VRHLKNDHKV 174 (307)
Q Consensus 165 ~~Hl~~~H~~ 174 (307)
..|++..+..
T Consensus 150 ~~H~~~H~~~ 159 (190)
T 2i13_A 150 HTHQRTHTGE 159 (190)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHhcCCC
Confidence 8888765543
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.33 E-value=5.2 Score=27.22 Aligned_cols=37 Identities=16% Similarity=0.462 Sum_probs=24.8
Q ss_pred eeeeccccCCCCCC-eeecCCCceechhchhhhcCCCCC
Q 021796 57 LLECPVCLNLMYPP-IYQCPNGHTLCSSCKARVRTGCPT 94 (307)
Q Consensus 57 ~l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~~~~CP~ 94 (307)
=|.|..|...|..- .+. ..|.++|..|..+....|+.
T Consensus 33 CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYA-VERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp TCBCSSSCCBCTTSCEEE-SSSCEEEHHHHHHHHHTCSS
T ss_pred CCcccccCCcCCcCcCEe-eCCeEECHHHHHHHHccCCC
Confidence 46788888887543 333 67788888887766555554
No 128
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=60.00 E-value=12 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=28.7
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
|...+.. ..+..|+.. -.-.|+.|+. |+... ....|..|++..|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 5444443 345677654 3456889987 65554 45789999887654
No 129
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=59.03 E-value=10 Score=25.33 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=23.4
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhchh
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKA 86 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~ 86 (307)
+.+.+...+.||.|...- -++.-.-|-++|..|-.
T Consensus 4 ~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred chhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCC
Confidence 446678888999998622 12322568889888843
No 130
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=58.55 E-value=2.5 Score=30.46 Aligned_cols=38 Identities=29% Similarity=0.810 Sum_probs=25.5
Q ss_pred eeeccccCCCCCCeeecCCCceechhchhhh--cCCCCCCcccCC
Q 021796 58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARV--RTGCPTCRHELG 100 (307)
Q Consensus 58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~--~~~CP~Cr~~~~ 100 (307)
..||.|...+.. .-++..|..|-..+ ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcccCcchhhHHH
Confidence 579999987652 23455577775544 257999988765
No 131
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=58.41 E-value=11 Score=26.83 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=33.0
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
|...+.. ..|..|++. =.-+|+.|+. |+... ....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 6666655 356778764 3557999987 66665 458999999998873
No 132
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=58.02 E-value=18 Score=25.39 Aligned_cols=51 Identities=22% Similarity=0.456 Sum_probs=31.5
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
.+.|+. .+|...+.. ..+..|+.. -.-.++.|+. |+... ....|..|++..
T Consensus 45 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 45 PYKCTW--EGCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CEECCS--SSCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CeeCCC--CCCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 355553 246666554 345677653 4557899987 55544 457899998754
No 133
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.30 E-value=7 Score=30.00 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=35.3
Q ss_pred CCeeeeccccCCCC---CCeeecCCCceechhchhhhc-C--CCCCCcccCC
Q 021796 55 HELLECPVCLNLMY---PPIYQCPNGHTLCSSCKARVR-T--GCPTCRHELG 100 (307)
Q Consensus 55 ~~~l~CpiC~~~l~---~Pi~~C~cGH~~C~~C~~~~~-~--~CP~Cr~~~~ 100 (307)
.+=|.|..|...|. .+.+. .-|..+|..|..+.. . .|..|.++|.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccC
Confidence 35588999999995 34455 789999999988764 3 7999999875
No 134
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.29 E-value=9.2 Score=25.25 Aligned_cols=46 Identities=30% Similarity=0.556 Sum_probs=32.0
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
|...+.. ..+..|+.. -.-+++.|+. |+.... ...|..|++..|..
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 6666654 356678764 3457899987 665554 57899999888764
No 135
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=57.11 E-value=7.2 Score=31.97 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=8.2
Q ss_pred eeeeccccCCCCCC
Q 021796 57 LLECPVCLNLMYPP 70 (307)
Q Consensus 57 ~l~CpiC~~~l~~P 70 (307)
.-.|..|.+++...
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 34566666666554
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.15 E-value=8.5 Score=31.11 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=36.4
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhh-cCCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-~~~CP~Cr~~~~~ 101 (307)
.+=|.|..|...|....+. ..|..+|..|..+. ...|..|..+|..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcc-cCCeeeecccccccccccccccccccCC
Confidence 3558899999999765455 78999999998765 4789999888753
No 137
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.21 E-value=7.6 Score=30.16 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=22.5
Q ss_pred eeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 58 LECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 58 l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
-.|.+|...|..- -..| .||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4799999987532 2457 4999999999754
No 138
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=55.04 E-value=13 Score=30.98 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=30.0
Q ss_pred eeccccCCCCC-----CeeecC-CCceechhchhhh--------------cCCCCCCcccCCc
Q 021796 59 ECPVCLNLMYP-----PIYQCP-NGHTLCSSCKARV--------------RTGCPTCRHELGN 101 (307)
Q Consensus 59 ~CpiC~~~l~~-----Pi~~C~-cGH~~C~~C~~~~--------------~~~CP~Cr~~~~~ 101 (307)
.||+|..+..+ ++++|. |..-|=..|..-. .-.||.|+..-..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 59999998754 378884 7766666664321 3689999886543
No 139
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=54.40 E-value=8 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=21.7
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhch
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCK 85 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~ 85 (307)
..+.+.|.||+|...+.- .=..|-++|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~---~~~~~~LiC~~cg 33 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEY---HQDKQELWSRQAK 33 (68)
T ss_dssp CSSSCCCBCSSSCCBCEE---ETTTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCeE---eCCCCEEEcCCCC
Confidence 457889999999987652 2145777776664
No 140
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.39 E-value=10 Score=35.09 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchh--h-----hcCCCCCCcccCCc---ccchhHHHHhhcc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKA--R-----VRTGCPTCRHELGN---IRCLALEKVAESL 114 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~--~-----~~~~CP~Cr~~~~~---~~~~~le~~~~~l 114 (307)
.-.|.||+=+..+..|+.--.|.|+-|..-.. . -.-.||.|.+.+.. .-+..+.+++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 44689999999999998877899997765311 1 12679999998764 3344555555543
No 141
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=53.22 E-value=4 Score=36.97 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCeeeeccccCCCCCCeeec---CCC--ceechhchhhhc---CCCCCCccc
Q 021796 55 HELLECPVCLNLMYPPIYQC---PNG--HTLCSSCKARVR---TGCPTCRHE 98 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C---~cG--H~~C~~C~~~~~---~~CP~Cr~~ 98 (307)
...-.||+|+....-.+..= .-| +..|+.|-..|. ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 44568999999876554431 245 589999988884 789999775
No 142
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=52.64 E-value=3.8 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=34.5
Q ss_pred CeeeeccccCCCCC---CeeecCCCceechhchhhhcC---CCCCCcccCC
Q 021796 56 ELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVRT---GCPTCRHELG 100 (307)
Q Consensus 56 ~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~~---~CP~Cr~~~~ 100 (307)
+=|.|..|...|.. +.+. .-|..+|..|..+... .|..|.++|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccc
Confidence 45789999998874 5555 7899999999877643 5999998875
No 143
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.14 E-value=7.9 Score=26.77 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=22.6
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceechhch
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCK 85 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~ 85 (307)
....+.+.|.||+|...+.- .-.-|.++|..|.
T Consensus 3 md~~LLeiL~CP~ck~~L~~---~~~~g~LvC~~c~ 35 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY---LESEQLLVNERLN 35 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE---ETTTTEEEETTTT
T ss_pred CCHHHHHHhCCCCCCCcCeE---eCCCCEEEcCCCC
Confidence 34567889999999997652 2134667776664
No 144
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.70 E-value=12 Score=24.84 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=32.7
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
.+.|+. |...+.. ..+..|++. -.-+|+.|+. |+.... ...|..|++..+.
T Consensus 14 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 14 PYGCVE----CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CccCCC----CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 355554 6666654 345677654 3457899987 665544 5789999886554
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.69 E-value=9.3 Score=32.47 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=25.5
Q ss_pred CCCCeeeeccccCCCCCC--eeecC-CCceechhchhh
Q 021796 53 DVHELLECPVCLNLMYPP--IYQCP-NGHTLCSSCKAR 87 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~P--i~~C~-cGH~~C~~C~~~ 87 (307)
.|.+.-.|+.|...|..- -..|. ||++||..|...
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 455567899999987522 24674 999999999654
No 146
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.11 E-value=18 Score=25.76 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=22.2
Q ss_pred eeeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 57 LLECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 57 ~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
.-.|.+|...|..- -..| .||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34799999887422 2456 4999999999654
No 147
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.95 E-value=22 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=23.3
Q ss_pred CeeeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 56 ELLECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 56 ~~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
+.-.|.+|...|..- -..| .||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 445799999987532 2456 4999999999754
No 148
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.00 E-value=4.9 Score=29.00 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=34.7
Q ss_pred cccccccccCCcceeec--ccchHHHHHhCC--CcCccCCCCCCCCcccc-ChhhHHHHhhccCCCC
Q 021796 114 LELPCRYQIWGCQDIFP--YYSKLKHEKNCN--YRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKVD 175 (307)
Q Consensus 114 l~~~C~n~~~GC~~~~~--~~~~~~He~~C~--~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~~ 175 (307)
-.+.|+. |...+. ...|..|.+... -+++.|+. |+... ....|..|++..|...
T Consensus 23 ~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 23 GEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp SCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred CCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 3455664 666554 345566655432 36899987 55554 4579999999888754
No 149
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=49.49 E-value=16 Score=29.38 Aligned_cols=107 Identities=18% Similarity=0.357 Sum_probs=43.5
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCcccchh--HHHHhhccccccccccCCcceeecc-c
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLA--LEKVAESLELPCRYQIWGCQDIFPY-Y 132 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~--le~~~~~l~~~C~n~~~GC~~~~~~-~ 132 (307)
..+.|++|...+...... -.|..- -.......|+.|...+.....+. +..-...-.+.|+. |...+.. .
T Consensus 20 ~~~~C~~C~~~f~~~~~l--~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~ 91 (190)
T 2i13_A 20 KPYACPECGKSFSRSDHL--AEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRA 91 (190)
T ss_dssp -----------CCSSHHH--HHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHH
T ss_pred CCCcCCCCccccCCHHHH--HHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc----cCCccCCHH
Confidence 346777777766554211 012110 00011235777766655432221 11111223456664 6666554 3
Q ss_pred chHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 133 SKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 133 ~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
.+..|... -.-.++.|+. |+... ....|..|++..+..
T Consensus 92 ~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 131 (190)
T 2i13_A 92 NLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGE 131 (190)
T ss_dssp HHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCC
Confidence 45566542 3446677765 54443 345677777665543
No 150
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=48.72 E-value=31 Score=26.38 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=34.7
Q ss_pred cccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 116 LPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 116 ~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
+.|+. |...+.. ..+..|... =.-+++.|+.. .|+.... ...|..|++..+..
T Consensus 63 ~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~h~~~ 118 (155)
T 2rpc_A 63 EECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFP--GCGKIFARSENLKIHKRTHTGE 118 (155)
T ss_dssp TTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCT--TTCCEESCHHHHHHHHTTTCSS
T ss_pred cCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcC--CCCCccCCHHHHHHHHHhhCCC
Confidence 45654 7766655 356678653 23478999873 3766654 57999999865543
No 151
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.71 E-value=16 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=22.6
Q ss_pred eeeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 57 LLECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 57 ~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
.-.|.+|...|..- -..| .||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34799999887532 2456 4999999999654
No 152
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=48.57 E-value=24 Score=25.84 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=45.4
Q ss_pred CCCCCCcccCCcccchhHHHH--hhccccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhH
Q 021796 90 TGCPTCRHELGNIRCLALEKV--AESLELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLL 164 (307)
Q Consensus 90 ~~CP~Cr~~~~~~~~~~le~~--~~~l~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l 164 (307)
..|+.|...+.....+..-.. ...-.+.|+. .+|...+.. ..+..|... -.-+++.||.. .|+.... ...|
T Consensus 35 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L 110 (124)
T 1ubd_C 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD--GCNKKFAQSTNL 110 (124)
T ss_dssp EECTTTCCEESSHHHHHHHGGGTSCCCCEECCS--TTCCCEESCHHHHHHHHHHHHCCCCCCCCST--TCCCCCSSTTTT
T ss_pred eECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCCCCceECCCC--CCCCccCCHHHH
Confidence 468888887765332221111 1123456653 257777765 456677653 34567888752 2665543 4688
Q ss_pred HHHhhccCC
Q 021796 165 VRHLKNDHK 173 (307)
Q Consensus 165 ~~Hl~~~H~ 173 (307)
..|++..+.
T Consensus 111 ~~H~~~H~~ 119 (124)
T 1ubd_C 111 KSHILTHAK 119 (124)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHcc
Confidence 888876554
No 153
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.34 E-value=14 Score=34.03 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhh-------cCCCCCCcccCCc---ccchhHHHHhhc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-------RTGCPTCRHELGN---IRCLALEKVAES 113 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-------~~~CP~Cr~~~~~---~~~~~le~~~~~ 113 (307)
.-.|.||+=+..+..|+.--.|.|+-|-.-..=+ .-.||.|.+.+.. .-+..+.+++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 4467899999999999888789999876432111 2679999998764 334455555554
No 154
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=48.07 E-value=13 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=22.6
Q ss_pred eeeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 57 LLECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 57 ~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
.-.|.+|...|..- -..| .||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34699999887532 2456 4999999999764
No 155
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=47.65 E-value=23 Score=26.38 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=38.3
Q ss_pred ccccccccccCCcceeeccc-chHHHHHhCCCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796 113 SLELPCRYQIWGCQDIFPYY-SKLKHEKNCNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV 174 (307)
Q Consensus 113 ~l~~~C~n~~~GC~~~~~~~-~~~~He~~C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~ 174 (307)
.-++.|+. |...+... .+..|...= -.|+.|+. |+... ....|..|++..|.+
T Consensus 72 ~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 72 ISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 34567775 88777664 567887754 67899987 65554 457899999988875
No 156
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.41 E-value=12 Score=27.40 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=31.8
Q ss_pred eeeeccccCCCC-----CCeeec-CCCceechhchhhh----cCCCCCCcccCC
Q 021796 57 LLECPVCLNLMY-----PPIYQC-PNGHTLCSSCKARV----RTGCPTCRHELG 100 (307)
Q Consensus 57 ~l~CpiC~~~l~-----~Pi~~C-~cGH~~C~~C~~~~----~~~CP~Cr~~~~ 100 (307)
.-.|.||.+-+- ++..-| .|+--+|..|..-- ...||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999999842 233345 48889999997643 378999998875
No 157
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=46.98 E-value=25 Score=23.45 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=28.2
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
|...+.. ..+..|+.. -.-.|+.|+. |+... ....|..|++..+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhCC
Confidence 5554443 345667653 2346899987 65554 45789999976544
No 158
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=46.69 E-value=22 Score=23.73 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=32.2
Q ss_pred cccccccCCcceeecc-cchHHHHH-h-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 116 LPCRYQIWGCQDIFPY-YSKLKHEK-N-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 116 ~~C~n~~~GC~~~~~~-~~~~~He~-~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
+.|.. .+|...+.. ..|..|.. . =.-.++.|+.++ |+.... ...|..|++..+.
T Consensus 8 ~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 8 MPCDF--PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA--CGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp EECSS--TTTCCEESSHHHHHHHHHHGGGSCCCEECSCTT--TCCEESSHHHHHHHHHHHHT
T ss_pred ccCCC--CCCcCccCCHHHHHHHHHHHhCCCCCeECCCCC--CcCccCCHHHHHHHHHHhCC
Confidence 44543 246666654 35667765 2 245678887632 665543 5788888875444
No 159
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=46.42 E-value=28 Score=26.60 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=5.0
Q ss_pred hhHHHHhhccC
Q 021796 162 PLLVRHLKNDH 172 (307)
Q Consensus 162 ~~l~~Hl~~~H 172 (307)
..|..|++..|
T Consensus 113 ~~L~~H~~~~H 123 (155)
T 2gli_A 113 SDRAKHQNRTH 123 (155)
T ss_dssp STTHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 44455544334
No 160
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.19 E-value=21 Score=25.84 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=22.4
Q ss_pred eeeeccccCCCCC--Ceeec-CCCceechhchhh
Q 021796 57 LLECPVCLNLMYP--PIYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 57 ~l~CpiC~~~l~~--Pi~~C-~cGH~~C~~C~~~ 87 (307)
.-.|.+|...|.. --..| .||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4479999987742 12456 4999999999764
No 161
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.13 E-value=13 Score=22.18 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.1
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+.. .|++... ...|..|++.
T Consensus 8 kp~~C~~~--~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTD--GCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSS--SCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCC--CCCCccCCHHHHHHHHHh
Confidence 68899863 3777654 5788899764
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.44 E-value=16 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCCeeeeccccCCCCCC--eeec-CCCceechhchhh
Q 021796 54 VHELLECPVCLNLMYPP--IYQC-PNGHTLCSSCKAR 87 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~ 87 (307)
|.+.-.|..|...|..- -..| .||.+||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 34445899999877522 2457 4999999999653
No 163
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.02 E-value=9.2 Score=22.76 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred CccCCCCCCCCccccChhhHHHHhhccCCC
Q 021796 145 PYNCPYAGAECSVTGDIPLLVRHLKNDHKV 174 (307)
Q Consensus 145 p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~ 174 (307)
.+.||.+.. .-++...|..|+...|..
T Consensus 5 GFiCP~C~~---~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 5 GFICPQCMK---SLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EEECTTTCC---EESSHHHHHHHHHHHTSS
T ss_pred ccCCcHHHH---HcCCHHHHHHHHHhcccc
Confidence 367998422 225778999999999974
No 164
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=44.65 E-value=10 Score=20.90 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=15.9
Q ss_pred cccccccccCCcceeecccchHHHHHhC
Q 021796 114 LELPCRYQIWGCQDIFPYYSKLKHEKNC 141 (307)
Q Consensus 114 l~~~C~n~~~GC~~~~~~~~~~~He~~C 141 (307)
+++.||- |+..++-.....|...|
T Consensus 5 f~vqcpv----cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 5 FQVQCPV----CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp CEEECTT----TCCEEEGGGHHHHHHHH
T ss_pred eeeeChH----HHHhCcHHHHHHHHhcc
Confidence 4566664 77777777777776655
No 165
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.31 E-value=21 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.641 Sum_probs=22.1
Q ss_pred CCeeeecc--ccCCCCCCeeecC-CCceechh
Q 021796 55 HELLECPV--CLNLMYPPIYQCP-NGHTLCSS 83 (307)
Q Consensus 55 ~~~l~Cpi--C~~~l~~Pi~~C~-cGH~~C~~ 83 (307)
.....|+. |...-..| +.|. ||..||..
T Consensus 23 ~~~~~C~~~~Ck~~~~l~-f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVA-VICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCEESSC-EECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCCCccc-eECCCCCcccccc
Confidence 44568999 99886666 6788 99999874
No 166
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=43.95 E-value=16 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.699 Sum_probs=20.5
Q ss_pred CccCCCCeeeeccccCCCCCCeeecCCCceech--hc
Q 021796 50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCS--SC 84 (307)
Q Consensus 50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~--~C 84 (307)
....+.+.|.||+|...+.- . . |.++|. .|
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~---~-~-~~L~C~~~~c 34 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEE---R-D-AELICTGQDC 34 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEE---E-T-TEEEECSSSC
T ss_pred CCHHHHhheeCCCCCCccee---c-C-CEEEcCCcCC
Confidence 34567889999999997542 1 2 666665 55
No 167
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.85 E-value=32 Score=23.12 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=33.6
Q ss_pred cccccccCCcceeeccc-chHHHHHh-CCC----cCccCCCCCCCCcccc-ChhhHHHHhhccCCCCc
Q 021796 116 LPCRYQIWGCQDIFPYY-SKLKHEKN-CNY----RPYNCPYAGAECSVTG-DIPLLVRHLKNDHKVDM 176 (307)
Q Consensus 116 ~~C~n~~~GC~~~~~~~-~~~~He~~-C~~----~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~~~ 176 (307)
+.|+. |...+... .+..|... -.- .++.|+. |+... ....|..|++..|....
T Consensus 16 ~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~~~ 75 (86)
T 1x6h_A 16 YACSH----CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK----CGKTFTRRNTMARHADNCAGPDG 75 (86)
T ss_dssp EECSS----SSCEESSHHHHHHHHHHTTCSSCCCCCEECSS----SCCEESCHHHHHHHHHHCCCCCS
T ss_pred CcCCC----CCCccCCHHHHHHHHHHhcCCcCCCcceECCC----CCChhCCHHHHHHHHHHccCCCC
Confidence 45554 66666553 45677643 322 5788986 66554 45789999988777543
No 168
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=43.03 E-value=27 Score=22.91 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=33.1
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhh
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLK 169 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~ 169 (307)
.+.|+. .||...+.. ..+..|+.. -.-+|+.|+.. .|+.... ...|..|++
T Consensus 17 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~--~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 17 SHICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK--GCERRFARSDELSRHRR 70 (72)
T ss_dssp CEECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCT--TCCCEESSHHHHHHHTT
T ss_pred ceeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCC--CCCcccCCHHHHHhHhh
Confidence 345654 468777765 356678653 55688999753 3766654 478888875
No 169
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=43.03 E-value=11 Score=31.57 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=21.6
Q ss_pred CcccCCcccchhHHHHhhccccccccccCCcceeecccchHHHHHh
Q 021796 95 CRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKN 140 (307)
Q Consensus 95 Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~ 140 (307)
|...+....-..+|+.+.--+..||.....|+|...+.++..|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 5555555556677888888899999864459999999999999875
No 170
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=42.75 E-value=29 Score=25.09 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred cCCCCeeeeccccCCCCCCeeecC-CCceechhchhhh
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARV 88 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~ 88 (307)
+.+..+-.|+||...-..-++.|. |+-+|=..|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 345567789999977766667774 8888888898875
No 171
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.42 E-value=30 Score=22.79 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=28.3
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
|...+.. ..+..|.+. -.-+++.|+. |+... ....|..|++..+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI----CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT----TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC----CCchhCCHHHHHHHHHhcCC
Confidence 5555544 345567553 3457899987 65554 45789999876543
No 172
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.51 E-value=16 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.514 Sum_probs=22.6
Q ss_pred eeeccccCCCCCC--eeec-CCCceechhchhhh
Q 021796 58 LECPVCLNLMYPP--IYQC-PNGHTLCSSCKARV 88 (307)
Q Consensus 58 l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~~ 88 (307)
-.|..|...|..- -..| .||.+||..|....
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 4799999987532 2456 49999999997643
No 173
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=41.51 E-value=15 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.543 Sum_probs=20.7
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhch
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCK 85 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~ 85 (307)
..+.+.+.||+|...+.- .=.-|-++|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~---~~~~~~LiC~~cg 33 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEF---QRAQAELVCNADR 33 (70)
T ss_dssp CCCCCCCBCTTTCCBEEE---ETTTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCEE---eCCCCEEEcCCCC
Confidence 457889999999997652 1124566666553
No 174
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=40.05 E-value=14 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=20.3
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhch
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCK 85 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~ 85 (307)
..+.+.|.||+|...+.- .=.-|-++|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~---~~~~~~LiC~~cg 33 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVF---DKSKDELICKGDR 33 (68)
T ss_dssp CCCEEECBCTTTCCBCEE---ETTTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCeE---eCCCCEEEcCCCC
Confidence 456788999999987652 1124566666553
No 175
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.62 E-value=25 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.398 Sum_probs=20.1
Q ss_pred eeeecc--ccCCCCCCeeecC-CCceechh
Q 021796 57 LLECPV--CLNLMYPPIYQCP-NGHTLCSS 83 (307)
Q Consensus 57 ~l~Cpi--C~~~l~~Pi~~C~-cGH~~C~~ 83 (307)
.-.|+. |...-..| +.|. |+..||..
T Consensus 12 ~~~Cs~~~Ck~~~ll~-f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQREMMK-LTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCCCSSC-CBCSSSCCBCCHH
T ss_pred CCCCCccCCCCCCccc-eECCCCCcccCcc
Confidence 457888 99875566 5788 99999864
No 176
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=39.06 E-value=28 Score=18.23 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=16.6
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+.. .|+.... ...|..|.+.
T Consensus 1 kp~~C~~~--~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWS--YCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCST--TCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCC--CCCcccCCHhHHHHHHHH
Confidence 46788742 3766654 5788999865
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.37 E-value=19 Score=24.64 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=20.4
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
=|.|..|...|....+.-..|.++|..|..+.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 35 CFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp GCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred cCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 46777787777543222256778887776654
No 178
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=38.03 E-value=36 Score=24.48 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=24.4
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhh
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLK 169 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~ 169 (307)
.+.|+. |...+.. ..+..|... -.-.++.|+.. .|+.... ...|..|++
T Consensus 66 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 66 PFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHHN 117 (119)
T ss_dssp CEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCST--TCCCEESSHHHHHHHHH
T ss_pred CccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCC--CCccccCCHHHHHHHHh
Confidence 455554 6655544 344566542 23356666321 1554433 356666654
No 179
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.47 E-value=7.4 Score=26.19 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=22.5
Q ss_pred eeeccccCCCCCCeeecCCCceechh--chhhhcCCCCCCcccC
Q 021796 58 LECPVCLNLMYPPIYQCPNGHTLCSS--CKARVRTGCPTCRHEL 99 (307)
Q Consensus 58 l~CpiC~~~l~~Pi~~C~cGH~~C~~--C~~~~~~~CP~Cr~~~ 99 (307)
-.||-|..++... . .|.|+.|.. |.. .-|=.|..+.
T Consensus 7 k~CP~C~~~Iek~--~-GCnhmtC~~~~C~~---~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKD--G-GCNHMVCRNQNCKA---EFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSC--C-SCCSSSCCSSGGGS---CCSSSSCSCS
T ss_pred eECcCCCCeeEeC--C-CCCcEEECCCCcCC---EEeeCcCCCc
Confidence 4799999988653 2 466666665 643 2355565543
No 180
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=36.91 E-value=48 Score=22.34 Aligned_cols=50 Identities=24% Similarity=0.449 Sum_probs=27.9
Q ss_pred ccccccccCCcceeecc-cchHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 115 ELPCRYQIWGCQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
.+.|+. .+|...+.. ..+..|... -.-.++.|+. |+... ....|..|++.
T Consensus 35 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~ 87 (89)
T 2wbs_A 35 PYHCDW--DGCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMKR 87 (89)
T ss_dssp CEECCS--TTTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGGG
T ss_pred CcCCCC--CCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHHh
Confidence 345542 246666544 345566542 3446778876 55444 34677788753
No 181
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.74 E-value=22 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=19.5
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
=|.|..|...|..-.+. ..|.++|..|..+.
T Consensus 41 CF~C~~C~~~L~~~~f~-~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 41 HFNCANCGKELTADARE-LKGELYCLPCHDKM 71 (79)
T ss_dssp TSBCSSSCCBCCTTCEE-ETTEEECHHHHHTT
T ss_pred CCEeCCCCCccCCCCEe-ECCEEeCHHHHHHh
Confidence 36677777776544343 56777777776554
No 182
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=36.24 E-value=27 Score=17.88 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=16.9
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+... ....|..|....|.
T Consensus 1 k~~~C~~----C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 1 KAYACGL----CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CCSBCTT----TCCBCSSSHHHHHHHTTTSC
T ss_pred CCcCCcc----cCcccCChHHHHHHHHHHcc
Confidence 3677876 55443 34788999655564
No 183
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=36.24 E-value=66 Score=25.48 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=8.7
Q ss_pred CCeeee--ccccCCCCC
Q 021796 55 HELLEC--PVCLNLMYP 69 (307)
Q Consensus 55 ~~~l~C--piC~~~l~~ 69 (307)
...+.| +.|...+..
T Consensus 10 ~~~~~C~~~~C~~~f~~ 26 (190)
T 1tf6_A 10 YKRYICSFADCGAAYNK 26 (190)
T ss_dssp CCCCBCSSTTTCCBCSS
T ss_pred CcceeCCCCCCcchhCC
Confidence 345666 567666654
No 184
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.79 E-value=23 Score=32.57 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=28.8
Q ss_pred CCCeeeeccccCCCCC---CeeecC-CCceechhchhhhcCCCC
Q 021796 54 VHELLECPVCLNLMYP---PIYQCP-NGHTLCSSCKARVRTGCP 93 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~---Pi~~C~-cGH~~C~~C~~~~~~~CP 93 (307)
....-.|..|...+.. .-++|. ||..+|..|..++. .|+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~ 396 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCG 396 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC-
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCC
Confidence 3556789999998853 345685 99999999998874 354
No 185
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.65 E-value=26 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.477 Sum_probs=20.6
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
+=|.|..|...|....+.-..|.++|..|..+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 346777777777543222256777887777654
No 186
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.39 E-value=22 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=28.3
Q ss_pred eeeccccCCCCCCe---eecCCCceechhchhhhcCCCCCCc
Q 021796 58 LECPVCLNLMYPPI---YQCPNGHTLCSSCKARVRTGCPTCR 96 (307)
Q Consensus 58 l~CpiC~~~l~~Pi---~~C~cGH~~C~~C~~~~~~~CP~Cr 96 (307)
-.|..|...+.-+- +.|.||.+||..=+..-.-.|+..-
T Consensus 16 ~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDy 57 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDH 57 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCS
T ss_pred CcchhhCCeecccccCceEecCCCEehhccCCccccCCcccc
Confidence 47999999988662 7899999999865443334566543
No 187
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.86 E-value=22 Score=24.21 Aligned_cols=32 Identities=13% Similarity=0.344 Sum_probs=23.8
Q ss_pred CeeeeccccCCCC--CCeeecCCCceechhchhhh
Q 021796 56 ELLECPVCLNLMY--PPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~~l~--~Pi~~C~cGH~~C~~C~~~~ 88 (307)
+=|.|..|...|. ...+. ..|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHh
Confidence 4578999999887 33444 57889999998765
No 188
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=33.73 E-value=29 Score=28.48 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=5.9
Q ss_pred eeeccccCCCC
Q 021796 58 LECPVCLNLMY 68 (307)
Q Consensus 58 l~CpiC~~~l~ 68 (307)
-.|+.|.+++.
T Consensus 116 ~~C~~C~~~I~ 126 (192)
T 1b8t_A 116 DGCPRCGQAVY 126 (192)
T ss_dssp EECTTTSCEEC
T ss_pred CcCCCCCCEec
Confidence 34556655554
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.63 E-value=14 Score=25.62 Aligned_cols=31 Identities=13% Similarity=0.427 Sum_probs=20.0
Q ss_pred cCCCCeeeeccccCCCCCCeeecCCCceechhch
Q 021796 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCK 85 (307)
Q Consensus 52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~ 85 (307)
..+.+.+.||+|...+.-- . .-|-++|..|.
T Consensus 3 ~~LLeiL~CP~ck~~L~~~--~-~~~~LiC~~cg 33 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLS--A-DKTELISKGAG 33 (69)
T ss_dssp CCGGGTCCCTTTCCCCEEC--T-TSSEEEETTTT
T ss_pred hHHHhheeCCCCCCcCeEe--C-CCCEEEcCCCC
Confidence 3567889999999877521 1 23556666553
No 190
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=33.33 E-value=47 Score=24.14 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCCC--CCcccCCcccchh-HHHHhhccccccccccCCcceeeccc-chHHHHHh-CCCcCccCCCCCCCCccccC-hhh
Q 021796 90 TGCP--TCRHELGNIRCLA-LEKVAESLELPCRYQIWGCQDIFPYY-SKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPL 163 (307)
Q Consensus 90 ~~CP--~Cr~~~~~~~~~~-le~~~~~l~~~C~n~~~GC~~~~~~~-~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~ 163 (307)
..|| .|...+.....+. ..+.-..-.+.|+. |...+... .+..|... -.-.++.|+.. .|+.... ...
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~ 79 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFE--GCGKRFSLDFN 79 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCST--TCCCEESCHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCC--CCcCccCCHHH
Confidence 3577 7887766532221 11111234466765 87777654 56788764 34567889863 3766554 578
Q ss_pred HHHHhhccCCC
Q 021796 164 LVRHLKNDHKV 174 (307)
Q Consensus 164 l~~Hl~~~H~~ 174 (307)
|..|++..+..
T Consensus 80 l~~H~~~h~~~ 90 (124)
T 1ubd_C 80 LRTHVRIHTGD 90 (124)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 89998866553
No 191
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.21 E-value=49 Score=17.25 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=16.6
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~ 171 (307)
+|+.|+.. .|+.... ...|..|++..
T Consensus 2 k~~~C~~~--~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 2 RPYSCDHP--GCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp CSBCCCCT--TCCCCBSSSHHHHHHHGGG
T ss_pred CCCcCcCC--CCCCccCCHHHHHHHHHHc
Confidence 47788732 2665543 57889998753
No 192
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=33.02 E-value=50 Score=21.56 Aligned_cols=44 Identities=30% Similarity=0.567 Sum_probs=28.9
Q ss_pred cceeecc-cchHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 125 CQDIFPY-YSKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 125 C~~~~~~-~~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
|...+.. ..|..|+.. =.-+|+.|+. |+.... ...|..|++. |.
T Consensus 10 C~k~F~~~~~L~~H~~~Ht~ekp~~C~~----C~k~F~~~~~L~~H~~~-Ht 56 (60)
T 4gzn_C 10 CGKTYRDASGLSRHRRAHLGYRPRSCPE----CGKCFRDQSEVNRHLKV-HQ 56 (60)
T ss_dssp TCCEESSHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHGGG-GS
T ss_pred CCCEeCCHHHHHHHHHHhCCCcCeECCC----CCCCcCCHHHHHHHhCc-cC
Confidence 6666654 356677653 3457899987 655544 5799999864 54
No 193
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.78 E-value=23 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.447 Sum_probs=21.6
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
+=|.|..|...|....+.-..|.++|..|..+.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 347788888877644332257788888887654
No 194
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.52 E-value=28 Score=17.59 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=15.5
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV----CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHh
Confidence 4678876 65553 45788888764
No 195
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.39 E-value=29 Score=17.57 Aligned_cols=25 Identities=36% Similarity=0.816 Sum_probs=16.6
Q ss_pred CccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 145 PYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 145 p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
|+.|+. |+... ....|..|.+..|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY----CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS----SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC----CCCccCCHHHHHHHHHHHcc
Confidence 677876 54443 34788999876554
No 196
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=32.37 E-value=22 Score=23.80 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=33.0
Q ss_pred ccccccCCcceeeccc-chHHHHHh----CC----CcCccCCCCCCCCccccC-hhhHHHHhhccC
Q 021796 117 PCRYQIWGCQDIFPYY-SKLKHEKN----CN----YRPYNCPYAGAECSVTGD-IPLLVRHLKNDH 172 (307)
Q Consensus 117 ~C~n~~~GC~~~~~~~-~~~~He~~----C~----~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H 172 (307)
.|.. .+|...+... ++..|... -+ -.++.|...+ |++.+. ...|..|++..|
T Consensus 3 ~C~W--~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~--C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 3 KCKW--KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWED--CDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCC--TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSS--CCCEESSHHHHHHHHHHHC
T ss_pred eEee--CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCC--CcCCCCChHHHHhhccccC
Confidence 4554 3566655543 35567431 11 1378898854 888765 579999999877
No 197
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=32.17 E-value=21 Score=21.42 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=16.7
Q ss_pred ccccccccCCcceeecccchHHHHHhCC
Q 021796 115 ELPCRYQIWGCQDIFPYYSKLKHEKNCN 142 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~~~~~~He~~C~ 142 (307)
.+.|||. ..-.++..++..|...|.
T Consensus 5 ~v~CPyd---~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 5 VVICPYD---SNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp CEECTTT---SSCEECGGGHHHHHHHHH
T ss_pred EEECCCC---CCeEeCHHHHHHHHHHHh
Confidence 4667753 456777777777777664
No 198
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=31.26 E-value=63 Score=22.65 Aligned_cols=36 Identities=22% Similarity=0.662 Sum_probs=24.7
Q ss_pred eeecc--ccCCCCCCeeecC-CCceechhchhhhcCCCCC
Q 021796 58 LECPV--CLNLMYPPIYQCP-NGHTLCSSCKARVRTGCPT 94 (307)
Q Consensus 58 l~Cpi--C~~~l~~Pi~~C~-cGH~~C~~C~~~~~~~CP~ 94 (307)
-.|.. |.+.-.-| +.|. |+.+||..=+....-.|+.
T Consensus 15 ~~Cs~~~C~~~dflp-f~C~~C~~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDFLP-FVCDGCSGIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSCCC-EECTTTCCEECSTTCSSGGGTCCC
T ss_pred CCcCcccCCCcccee-eECcccCcCcCcccCCccccCCCC
Confidence 47888 99887667 6788 9999987433222345663
No 199
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.22 E-value=35 Score=17.19 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=15.8
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 1 RSFVCEV----CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CCeECCC----CCcccCCHHHHHHHHHHh
Confidence 3678876 55443 357888897753
No 200
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.05 E-value=30 Score=22.96 Aligned_cols=32 Identities=13% Similarity=0.390 Sum_probs=18.2
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
=|.|..|...|....+.-..|.++|..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 35667777666543222145667777766554
No 201
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=30.62 E-value=65 Score=25.51 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=42.8
Q ss_pred CCC--CCCcccCCcccchhHH-HH-hhccccccccccCCcceeecc-cchHHHHH-hC--CCcCccCCCCCCCCccccC-
Q 021796 90 TGC--PTCRHELGNIRCLALE-KV-AESLELPCRYQIWGCQDIFPY-YSKLKHEK-NC--NYRPYNCPYAGAECSVTGD- 160 (307)
Q Consensus 90 ~~C--P~Cr~~~~~~~~~~le-~~-~~~l~~~C~n~~~GC~~~~~~-~~~~~He~-~C--~~~p~~Cp~~g~~C~~~g~- 160 (307)
..| +.|...+.....+..- +. ...-.+.|+. .+|...+.. ..+..|.. .- .-.++.|+.. .|+....
T Consensus 43 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k~f~~ 118 (190)
T 1tf6_A 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKK 118 (190)
T ss_dssp SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSCCCEESCHHHHHHHHHTTSSTTTSCCEECSS--SSCEECSS
T ss_pred ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCCCCccCCHHHHHHHHHHhcCCCcceeeCCCC--CCccccCC
Confidence 467 7787766553322211 11 1123455552 147776655 35667863 22 2456777432 2665543
Q ss_pred hhhHHHHhhccCCC
Q 021796 161 IPLLVRHLKNDHKV 174 (307)
Q Consensus 161 ~~~l~~Hl~~~H~~ 174 (307)
...|..|++..+..
T Consensus 119 ~~~L~~H~~~H~~~ 132 (190)
T 1tf6_A 119 HNQLKVHQFSHTQQ 132 (190)
T ss_dssp HHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHhCCC
Confidence 46788887765543
No 202
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.97 E-value=1.6e+02 Score=21.33 Aligned_cols=45 Identities=24% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCCCeeeeccccCCCCCCeeecC---CC-ceechhchhhh-----cCCCCCCccc
Q 021796 53 DVHELLECPVCLNLMYPPIYQCP---NG-HTLCSSCKARV-----RTGCPTCRHE 98 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~---cG-H~~C~~C~~~~-----~~~CP~Cr~~ 98 (307)
+..+...| +|..+....+++|. |. .-|=..|+.-. .-.||.|+..
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 33566778 99998766677774 43 33444554321 1457777653
No 203
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.90 E-value=47 Score=18.10 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=16.8
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|.+..
T Consensus 10 k~~~C~~----C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCPD----CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCTT----TCCCBSSHHHHHHHHGGG
T ss_pred CCccCCC----CCcccCcHHHHHHHHHHh
Confidence 6889987 55443 457889997653
No 204
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.89 E-value=27 Score=28.51 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=7.7
Q ss_pred cCCCCCCcccC
Q 021796 89 RTGCPTCRHEL 99 (307)
Q Consensus 89 ~~~CP~Cr~~~ 99 (307)
...||.|..+-
T Consensus 153 p~~CP~Cg~~~ 163 (170)
T 3pwf_A 153 PEYCPVCGAPK 163 (170)
T ss_dssp CSBCTTTCCBG
T ss_pred CCCCCCCCCCH
Confidence 35788887753
No 205
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.80 E-value=33 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.8
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~k~f~~~~~l~~H~~~H 25 (29)
T 1rik_A 1 YKFACPE----CPKRFMRSDHLTLHILLH 25 (29)
T ss_dssp CCEECSS----SSCEESCSHHHHHHHTGG
T ss_pred CCccCCC----CCchhCCHHHHHHHHHHh
Confidence 3678876 55543 357888898653
No 206
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.97 E-value=25 Score=23.12 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=18.2
Q ss_pred eeeeccccCCCCCC-eeecCCCceechhchhh
Q 021796 57 LLECPVCLNLMYPP-IYQCPNGHTLCSSCKAR 87 (307)
Q Consensus 57 ~l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~ 87 (307)
=|.|..|...|... .+. ..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYE-RKGLAYCETHYNQ 61 (66)
T ss_dssp TCBCTTTCCBCSSSCCEE-ETTEEECHHHHHH
T ss_pred cCEECCCCCCCCCCceEe-ECCcEECHHHHHH
Confidence 46677777766543 233 5667777777654
No 207
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.75 E-value=29 Score=17.42 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=15.1
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 1 KEHKCPH----CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCCSS----CCCCCCTTTHHHHHHHHH
T ss_pred CCCcCCC----CCcccCCHHHHHHHHHHh
Confidence 3677876 54443 346788887653
No 208
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.68 E-value=26 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=17.9
Q ss_pred eeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
=|.|..|...|..-.+.-..|.++|..|..+.
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 35666676666543222145667777666543
No 209
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.53 E-value=1.5e+02 Score=20.57 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGN 101 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~ 101 (307)
...-.|..|.+.+...++. .-+..+-..| ..|-.|+.++..
T Consensus 23 ~~~~~C~~C~~~I~~~~~~-a~~~~~H~~C-----F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVK-ARDKYRHPEC-----FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEE-SSSCEECTTT-----CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccEEE-ECCceECccC-----CEecCCCCCCCC
Confidence 4456799999998876555 5666665555 467788887754
No 210
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.33 E-value=32 Score=17.25 Aligned_cols=23 Identities=26% Similarity=0.904 Sum_probs=15.2
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSL----CPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSS----SSCEESSHHHHHHHHHH
T ss_pred cCccCCC----cChhhCCHHHHHHHHHH
Confidence 4678876 65554 35788888754
No 211
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.96 E-value=40 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.475 Sum_probs=20.3
Q ss_pred eeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCC
Q 021796 58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELG 100 (307)
Q Consensus 58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~ 100 (307)
-.|+.|.+++...++. .-|..+-..| ..|..|+.++.
T Consensus 26 ~~C~~C~~~I~~~~v~-a~~~~~H~~C-----F~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLV-ALGKSWHPEE-----FNCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCCSCEEE-ETTEEECTTT-----CBCSSSCCBCS
T ss_pred CCCccCCCEecceEEE-ECCccccccC-----CccCCCCCCCC
Confidence 3567777766555444 3455554444 34556666554
No 212
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.92 E-value=37 Score=18.20 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.9
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+... ....|..|.+..+.
T Consensus 6 k~~~C~~----C~k~f~~~~~L~~H~~~h~~ 32 (35)
T 2elx_A 6 SGYVCAL----CLKKFVSSIRLRSHIREVHG 32 (35)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHHHTSC
T ss_pred CCeECCC----CcchhCCHHHHHHHHHHHcC
Confidence 5788986 55554 45789999876443
No 213
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.83 E-value=36 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=18.7
Q ss_pred eeeeccccCCCCC-CeeecCCCceechhchhhh
Q 021796 57 LLECPVCLNLMYP-PIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 57 ~l~CpiC~~~l~~-Pi~~C~cGH~~C~~C~~~~ 88 (307)
=|.|..|...|.. +.+. ..|.++|..|..+.
T Consensus 33 CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVP-DKGAHYCVPCYENK 64 (72)
T ss_dssp TCBCTTTCCBTTTSCEEE-ETTEEEEHHHHHHH
T ss_pred cCeECCCCCcCCCCccCC-cCCeEECHHHHHHH
Confidence 3667777776654 2233 46677777776554
No 214
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.52 E-value=28 Score=17.65 Aligned_cols=23 Identities=26% Similarity=0.803 Sum_probs=15.2
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+. |+.... ...|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 2 APYRCPL----CRAGCPSLASMQAHMRG 25 (27)
T ss_dssp CTEEETT----TTEEESCHHHHHHHHTT
T ss_pred cCcCCCC----CCcccCCHHHHHHHHHh
Confidence 4678876 655543 4678888754
No 215
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=27.38 E-value=56 Score=22.37 Aligned_cols=45 Identities=20% Similarity=0.486 Sum_probs=27.6
Q ss_pred CCeeeeccccCCCCC-CeeecC-CCceechhchhhh-------cCCCCCCcccC
Q 021796 55 HELLECPVCLNLMYP-PIYQCP-NGHTLCSSCKARV-------RTGCPTCRHEL 99 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~-Pi~~C~-cGH~~C~~C~~~~-------~~~CP~Cr~~~ 99 (307)
.+...|++|...-.. .+++|. |..-|=..|+... .-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 456779999988644 467774 5555555565422 14577776543
No 216
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.02 E-value=39 Score=27.08 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=22.8
Q ss_pred CeeeeccccCCCC---CCeeec-CCCceechhchh
Q 021796 56 ELLECPVCLNLMY---PPIYQC-PNGHTLCSSCKA 86 (307)
Q Consensus 56 ~~l~CpiC~~~l~---~Pi~~C-~cGH~~C~~C~~ 86 (307)
..-.|.+|..+|. .+=.+| .|.|.+|..|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc
Confidence 4668999999852 333456 499999999973
No 217
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=26.99 E-value=18 Score=25.75 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred CcceeecccchHHHHHhCCC-cCccCCCCCCCCccccChhhHHHH
Q 021796 124 GCQDIFPYYSKLKHEKNCNY-RPYNCPYAGAECSVTGDIPLLVRH 167 (307)
Q Consensus 124 GC~~~~~~~~~~~He~~C~~-~p~~Cp~~g~~C~~~g~~~~l~~H 167 (307)
+|..++.-.++..|...|.- ..+.|- +|.......+...|
T Consensus 15 ~Cgd~lKK~kv~~H~~~Cr~~~~~SCI----DC~~~F~~~~y~~H 55 (79)
T 1wjv_A 15 ACGESVKKIQVEKHVSNCRNCECLSCI----DCGKDFWGDDYKSH 55 (79)
T ss_dssp SSCCEEETTHHHHHHHHCTTCCEEEET----TTTEEEEGGGTTTC
T ss_pred CCCCeeecccchhHHhhCCCCCcEEec----ccCCeeCCCCEeCE
Confidence 59999999999999999986 478885 47777666666666
No 218
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.78 E-value=24 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=20.5
Q ss_pred CeeeeccccCCCCCC-eeecCCCceechhchhhhc-CCCCCCc
Q 021796 56 ELLECPVCLNLMYPP-IYQCPNGHTLCSSCKARVR-TGCPTCR 96 (307)
Q Consensus 56 ~~l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~~-~~CP~Cr 96 (307)
+=|.|..|...|..- .+. ..|.++|..|..+.. .+|-.|.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAI-HDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSEECSSSCCEECSSCCEE-ETTEEECSHHHHHHCC-------
T ss_pred ccCccCCCCCCCCCCCeEe-eCCEEECHHHHHHHhCCcccccC
Confidence 346777777776543 233 567777777776542 4454443
No 219
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.72 E-value=34 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.456 Sum_probs=14.5
Q ss_pred eeeccccCCCCCCeeecCCCceechhchhh
Q 021796 58 LECPVCLNLMYPPIYQCPNGHTLCSSCKAR 87 (307)
Q Consensus 58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~ 87 (307)
|.|..|...|..-.+.-..|.++|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhH
Confidence 455555555543222114455566555544
No 220
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.69 E-value=44 Score=16.79 Aligned_cols=24 Identities=38% Similarity=0.833 Sum_probs=16.1
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|.+..
T Consensus 2 k~~~C~~----C~~~f~~~~~l~~H~~~h 26 (30)
T 2m0d_A 2 KPYQCDY----CGRSFSDPTSKMRHLETH 26 (30)
T ss_dssp CCEECTT----TCCEESCHHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHh
Confidence 4678876 65554 357888998753
No 221
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.50 E-value=49 Score=16.29 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=13.7
Q ss_pred CccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 145 PYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 145 p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
|+.|+. |+... ....|..|.+.
T Consensus 1 ~~~C~~----C~k~f~~~~~l~~H~~~ 23 (27)
T 1znf_A 1 XYKCGL----CERSFVEKSALSRHQRV 23 (27)
T ss_dssp -CBCSS----SCCBCSSHHHHHHHGGG
T ss_pred CccCCC----CCCcCCCHHHHHHHHHH
Confidence 466765 55443 35788888765
No 222
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.39 E-value=34 Score=28.05 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCeeeeccccCCCCCCeeecCCCceechhchhhh-cCCCCCCccc
Q 021796 55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHE 98 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-~~~CP~Cr~~ 98 (307)
.+=|.|..|...|..-.+.-.-|..+|..|..+. ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 3568899999998765333268999999998876 3667666543
No 223
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=26.09 E-value=50 Score=17.68 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=17.6
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhccC
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKNDH 172 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H 172 (307)
+|+.|+. |+... ....|..|++..+
T Consensus 6 k~~~C~~----C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCRI----CLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECSS----SCCEESSHHHHHHHHGGGT
T ss_pred cCeeCCC----CCcccCCHHHHHHHHHHcC
Confidence 5788886 65554 4578999987643
No 224
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.71 E-value=1.1e+02 Score=20.64 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=26.7
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCC
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELG 100 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~ 100 (307)
..-.|+.|.+.+...++. .-+..+-..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~-a~~~~~H~~C-----F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVK-LRDRHRHPEC-----YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEE-CSSCEECTTT-----TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEE-ECcceeCcCc-----CeeCCCCCCCC
Confidence 345799999998876555 5566665555 45777877653
No 225
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=25.64 E-value=21 Score=30.41 Aligned_cols=25 Identities=0% Similarity=-0.105 Sum_probs=7.8
Q ss_pred ccccccccCCcceee-----cccchHHHHH
Q 021796 115 ELPCRYQIWGCQDIF-----PYYSKLKHEK 139 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~-----~~~~~~~He~ 139 (307)
.+.|++...||+..+ +..++.+|..
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~ 38 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNT 38 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHH
Confidence 478999999999998 8888888865
No 226
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=25.54 E-value=42 Score=23.25 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=20.1
Q ss_pred ccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhc
Q 021796 131 YYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKN 170 (307)
Q Consensus 131 ~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~ 170 (307)
..+...|+.+|.|.. ||+ |.-..+-+-|..|.-.
T Consensus 18 ~~DqelHdlnCs~Ni--CPY----C~nRls~eGl~RHV~~ 51 (77)
T 2l7x_A 18 AIDAEMHDLNCSYNI--CPY----CASRLTSDGLARHVTQ 51 (77)
T ss_dssp HHHHHHHHHHHTTTC--CTT----TCCCCCTTTHHHHHTT
T ss_pred HHHHHHHHcCCCccc--Chh----hhccCCccchhhhccc
Confidence 345566777777765 565 3334455566666543
No 227
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=25.42 E-value=57 Score=21.14 Aligned_cols=50 Identities=18% Similarity=0.402 Sum_probs=31.5
Q ss_pred ccccccccCCcceeeccc-chHHHHHh-CCCcCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 115 ELPCRYQIWGCQDIFPYY-SKLKHEKN-CNYRPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 115 ~~~C~n~~~GC~~~~~~~-~~~~He~~-C~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
.+.|+. .+|...+... .+..|+.. -.-+++.|+. |+... ....|..|++.
T Consensus 19 ~~~C~~--~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~ 71 (73)
T 1f2i_G 19 PYACPV--ESCDRRFSRSDELTRHIRIHTGQKPFQCRI----CMRNFSRSDHLTTHIRT 71 (73)
T ss_dssp CEECSS--TTBCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHTT
T ss_pred ccCCcC--CCCCCccCCHHHHHHHHHhhCCCCCeECCC----CCchhCCHHHHHHHHHh
Confidence 355653 2477766553 45677653 4457899987 55554 45788888764
No 228
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.31 E-value=30 Score=23.19 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=11.5
Q ss_pred CCCCeeeeccccCCC
Q 021796 53 DVHELLECPVCLNLM 67 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l 67 (307)
....+..||.|.++-
T Consensus 26 ~~p~l~~c~~cG~~~ 40 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKK 40 (60)
T ss_dssp CCCCCEECTTTCCEE
T ss_pred cCCCceECCCCCCEe
Confidence 346778899999973
No 229
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.88 E-value=32 Score=22.65 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=18.4
Q ss_pred CeeeeccccCCCCCC-eeecCCCceec-hhchhh
Q 021796 56 ELLECPVCLNLMYPP-IYQCPNGHTLC-SSCKAR 87 (307)
Q Consensus 56 ~~l~CpiC~~~l~~P-i~~C~cGH~~C-~~C~~~ 87 (307)
+=|.|..|..+|..- .+. ..|..+| ..|..+
T Consensus 31 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMP-VEGMVFCSVECKKR 63 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEE-ETTEEESSHHHHHT
T ss_pred CCEECCCCCCcCCCCceEE-ECCEEecCHHHhhh
Confidence 346677777776543 233 5667777 666544
No 230
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.86 E-value=26 Score=23.84 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=5.9
Q ss_pred eeccccCCCCC
Q 021796 59 ECPVCLNLMYP 69 (307)
Q Consensus 59 ~CpiC~~~l~~ 69 (307)
.|+.|.+++.+
T Consensus 17 ~C~~C~~~I~~ 27 (77)
T 2egq_A 17 KCAGCKNPITG 27 (77)
T ss_dssp CCSSSCCCCCC
T ss_pred cCcccCCcccC
Confidence 35555555553
No 231
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.58 E-value=51 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.460 Sum_probs=22.8
Q ss_pred CeeeeccccCCCC---CCeeec-CCCceechhchhhh
Q 021796 56 ELLECPVCLNLMY---PPIYQC-PNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~~l~---~Pi~~C-~cGH~~C~~C~~~~ 88 (307)
..-.|.+|...+. .+=.+| .|.|.+|..|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 3568999999983 222455 48888888886543
No 232
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.09 E-value=1.7e+02 Score=19.86 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=26.8
Q ss_pred CCCeeeeccccCCCCCCeeecC---CC-ceechhchhhh-----cCCCCCCccc
Q 021796 54 VHELLECPVCLNLMYPPIYQCP---NG-HTLCSSCKARV-----RTGCPTCRHE 98 (307)
Q Consensus 54 ~~~~l~CpiC~~~l~~Pi~~C~---cG-H~~C~~C~~~~-----~~~CP~Cr~~ 98 (307)
..+...| +|..+-...+++|. |. .-|=..|+.-. .-.||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 3456678 89987666677774 44 34555565421 1458888654
No 233
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.81 E-value=41 Score=22.76 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=5.1
Q ss_pred eeeccccCCCC
Q 021796 58 LECPVCLNLMY 68 (307)
Q Consensus 58 l~CpiC~~~l~ 68 (307)
|.|..|...|.
T Consensus 37 F~C~~C~~~L~ 47 (76)
T 2cu8_A 37 LKCERCSKTLT 47 (76)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCCCCCCccC
Confidence 44444444443
No 234
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=51 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=18.5
Q ss_pred eeeeccccCCCCC-CeeecCCCceechhchhhhcCCCCCCcccCC
Q 021796 57 LLECPVCLNLMYP-PIYQCPNGHTLCSSCKARVRTGCPTCRHELG 100 (307)
Q Consensus 57 ~l~CpiC~~~l~~-Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~ 100 (307)
.-.|+.|.+++.+ .++. .-+..+-..| ..|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~-a~~~~wH~~C-----F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL-ALDKQWHVSC-----FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE-ETTEEECTTT-----CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE-ECCccccccc-----CCcCcCCCCcC
Confidence 3456777766642 2222 3344444444 34555655554
No 235
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.58 E-value=23 Score=20.06 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=6.5
Q ss_pred eeeeccccCCCCC
Q 021796 57 LLECPVCLNLMYP 69 (307)
Q Consensus 57 ~l~CpiC~~~l~~ 69 (307)
.+.||+|...+-+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3455555554433
No 236
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.25 E-value=59 Score=17.42 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=16.2
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|++..
T Consensus 1 kp~~C~~----C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 1 YKFACPE----CPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp CCCCCSS----SCCCCSSHHHHHHHHHHH
T ss_pred CcccCCC----CCchhCCHHHHHHHHHHh
Confidence 3678876 55543 457899998753
No 237
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=23.04 E-value=42 Score=20.17 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=19.4
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV 174 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~ 174 (307)
+|+.|+. |+.... ...|..|++..|..
T Consensus 6 kp~~C~~----C~k~F~~~~~L~~H~~~~H~~ 33 (48)
T 3iuf_A 6 KPYACDI----CGKRYKNRPGLSYHYAHSHLA 33 (48)
T ss_dssp SCEECTT----TCCEESSHHHHHHHHHHSSCC
T ss_pred cCEECCC----cCcccCCHHHHHHHhhhhcCC
Confidence 6888987 655544 57899999856753
No 238
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.80 E-value=55 Score=19.01 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=18.5
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+.... ...|..|++..|.
T Consensus 11 k~~~C~~----C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 11 KPYECIE----CGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CSBCCSS----SCCCBSSHHHHHHHHTTTTT
T ss_pred CCEECCc----cCchhCChHHHHHHhHhhcC
Confidence 6788987 555544 5789999985564
No 239
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.56 E-value=54 Score=22.46 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCeeeeccccCCCCCCeeecC-C-Cceechhchhhhc
Q 021796 55 HELLECPVCLNLMYPPIYQCP-N-GHTLCSSCKARVR 89 (307)
Q Consensus 55 ~~~l~CpiC~~~l~~Pi~~C~-c-GH~~C~~C~~~~~ 89 (307)
.++--|-||.+- .++.|. | |-+||..|..+.+
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 344458888876 446774 7 8899999998864
No 240
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.47 E-value=48 Score=17.85 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=16.3
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+. |+.... ...|..|++.
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elt_A 8 KPYKCPQ----CSYASAIKANLNVHLRK 31 (36)
T ss_dssp CSEECSS----SSCEESSHHHHHHHHHH
T ss_pred CCCCCCC----CCcccCCHHHHHHHHHH
Confidence 5788986 665544 5788899865
No 241
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.36 E-value=71 Score=17.88 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.1
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDH 172 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H 172 (307)
+|+.|+. |+.... ...|..|++..+
T Consensus 9 k~~~C~~----C~k~f~~~~~L~~H~~~H~ 34 (41)
T 2ept_A 9 RVYECQE----CGKSFRQKGSLTLHERIHT 34 (41)
T ss_dssp CCEECSS----SCCEESSHHHHHHHGGGCC
T ss_pred CCeECCC----CCCCcCCHHHHHHHHHHhC
Confidence 5788886 655543 578899977543
No 242
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.25 E-value=37 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCCeeeeccccCCCCCCeeecCCCceechhchhh
Q 021796 53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKAR 87 (307)
Q Consensus 53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~ 87 (307)
.+.....|++|.+.+-.+-..-..|..+|..|..+
T Consensus 168 ~~~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 168 KNGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp CCCCEEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred CCCCceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 34557899999999876622114799999999865
No 243
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.70 E-value=19 Score=18.05 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=13.4
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+. |+.... ...|..|.+.
T Consensus 1 kp~~C~~----C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 1 KPYVCER----CGKRFVQSSQLANHIRH 24 (26)
Confidence 3677776 554433 3567777653
No 244
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.85 E-value=51 Score=17.86 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=16.5
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhcc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKND 171 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~ 171 (307)
+|+.|+. |+... ....|..|++..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCEY----CNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECTT----TCCEESSHHHHHHHHHHH
T ss_pred CCEECCC----CCceeCCHHHHHHHHHHh
Confidence 5788886 55554 357888897753
No 245
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.82 E-value=54 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=16.3
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
+|+.|+. |+... ....|..|.+.
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCSL----CEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECSS----SSCEESCHHHHHHHHHH
T ss_pred CCccCCC----CCchhCCHHHHHHHHHH
Confidence 5788986 65554 45788899765
No 246
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=78 Score=17.80 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=17.2
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDH 172 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H 172 (307)
+|+.|+. |+.... ...|..|++..+
T Consensus 10 k~~~C~~----C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2eos_A 10 KPYPCEI----CGTRFRHLQTLKSHLRIHT 35 (42)
T ss_dssp CCBCCSS----SCCCBSSHHHHHHHTTTTS
T ss_pred CCEECCC----CCCccCCHHHHHHHHHhcC
Confidence 5788986 555444 578899987543
No 247
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.65 E-value=72 Score=18.53 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=17.1
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDH 172 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H 172 (307)
+|+.|+. |+.... ...|..|++..+
T Consensus 11 k~~~C~~----C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eon_A 11 KPYKCQV----CGKAFRVSSHLVQHHSVHS 36 (46)
T ss_dssp CSCBCSS----SCCBCSSHHHHHHHTTTTT
T ss_pred cccCCCC----CCcccCcHHHHHHHHHhcC
Confidence 6788886 655544 578899986533
No 248
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=87 Score=18.08 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=17.2
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+.... ...|..|++..+.
T Consensus 11 k~~~C~~----C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2enh_A 11 KPYECDV----CRKAFSHHASLTQHQRVHSG 37 (46)
T ss_dssp SSCBCTT----TCCBCSSSHHHHHHGGGSCC
T ss_pred CCcCCCC----cCchhCCHHHHHHHHHHhCC
Confidence 5788886 555443 4788899875433
No 249
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.35 E-value=1.6e+02 Score=20.41 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred CeeeeccccCCCCCCeeecCCCceechhchhhh
Q 021796 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV 88 (307)
Q Consensus 56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~ 88 (307)
+=|.|..|...|..-.+.-..|..+|..|..+.
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 448899999998753233268999999998775
No 250
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.17 E-value=47 Score=18.10 Aligned_cols=26 Identities=35% Similarity=0.755 Sum_probs=17.9
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+.... ...|..|.+..+.
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~h~~ 34 (37)
T 2elo_A 8 RSYSCPV----CEKSFSEDRLIKSHIKTNHP 34 (37)
T ss_dssp CCCEETT----TTEECSSHHHHHHHHHHHCS
T ss_pred CCcCCCC----CCCccCCHHHHHHHHHHHcC
Confidence 5788886 665543 5789999876443
No 251
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=48 Score=18.13 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=16.1
Q ss_pred cCccCCCCCCCCccccCh--hhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGDI--PLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~~--~~l~~Hl~~ 170 (307)
+|+.|+. |+..... ..|..|.+.
T Consensus 8 k~~~C~~----C~k~f~~~~~~L~~H~~~ 32 (37)
T 2elp_A 8 RAMKCPY----CDFYFMKNGSDLQRHIWA 32 (37)
T ss_dssp CCEECSS----SSCEECSSCHHHHHHHHH
T ss_pred CCeECCC----CChhhccCHHHHHHHHHh
Confidence 5788986 6655544 588888764
No 252
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.56 E-value=62 Score=26.77 Aligned_cols=36 Identities=19% Similarity=0.503 Sum_probs=23.3
Q ss_pred ccCCCCeeeeccccCCCCCCeeecCCCceechhchh
Q 021796 51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKA 86 (307)
Q Consensus 51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~ 86 (307)
..++.....||.|......-+.--.-|-.+|..|-.
T Consensus 15 ~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp SSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred ccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 455667779999998322222222568899988843
No 253
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.51 E-value=53 Score=24.34 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=23.7
Q ss_pred CeeeeccccCCCCC---CeeecCCCceechhchhhh-cCCCCCC
Q 021796 56 ELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARV-RTGCPTC 95 (307)
Q Consensus 56 ~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~-~~~CP~C 95 (307)
+=|.|..|..+|.. +.+. ..|..+|..|..+. ..+|-.|
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHHHHTSCCSSC
T ss_pred hcCcccccCCchhcCCCeeEE-ECCeeechHHHHHHhCcccCcC
Confidence 34677777777753 3333 56777777776654 2445444
No 254
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.46 E-value=68 Score=17.27 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.1
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
+|+.|+. |+.... ...|..|++.
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 8 LLYDCHI----CERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCEECSS----SCCEESSHHHHHHHHTT
T ss_pred CCeECCC----CCCccCCHHHHHHHHHH
Confidence 5788986 655544 4688889765
No 255
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.32 E-value=54 Score=16.28 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=15.5
Q ss_pred cCccCCCCCCCCcccc-ChhhHHHHhhc
Q 021796 144 RPYNCPYAGAECSVTG-DIPLLVRHLKN 170 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~ 170 (307)
+|+.|+. |+... ....|..|.+.
T Consensus 1 ~~~~C~~----C~k~f~~~~~l~~H~~~ 24 (29)
T 2m0f_A 1 GPLKCRE----CGKQFTTSGNLKRHLRI 24 (29)
T ss_dssp CCEECTT----TSCEESCHHHHHHHHHH
T ss_pred CCccCCC----CCCccCChhHHHHHHHH
Confidence 3677876 65554 45788888765
No 256
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.21 E-value=30 Score=20.72 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=17.4
Q ss_pred CcCccCCCCCCCCccccC-hhhHHHHhhc
Q 021796 143 YRPYNCPYAGAECSVTGD-IPLLVRHLKN 170 (307)
Q Consensus 143 ~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~ 170 (307)
-+|+.|++. .|+.... ...|..|.+.
T Consensus 16 ~k~~~C~~~--~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFP--GCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCT--TCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCC--CCCCccCCHHHHHHHHHH
Confidence 468889642 2766554 3678888765
No 257
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.21 E-value=50 Score=22.62 Aligned_cols=29 Identities=14% Similarity=0.547 Sum_probs=13.9
Q ss_pred eeeccccCCCCCC-eeecCCCceechhchhh
Q 021796 58 LECPVCLNLMYPP-IYQCPNGHTLCSSCKAR 87 (307)
Q Consensus 58 l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~ 87 (307)
|.|..|...|..- .+. ..|.++|..|..+
T Consensus 44 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~ 73 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFP-KGEDFYCVTCHET 73 (82)
T ss_dssp CCCSSSCCCCTTSCEEE-ETTEEEEHHHHHH
T ss_pred CchhhCCCccCCCccEe-eCCEEECHHHHHH
Confidence 4555555555432 222 3455555555544
No 258
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.17 E-value=82 Score=17.65 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=17.5
Q ss_pred cCccCCCCCCCCccccC-hhhHHHHhhccCC
Q 021796 144 RPYNCPYAGAECSVTGD-IPLLVRHLKNDHK 173 (307)
Q Consensus 144 ~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~ 173 (307)
+|+.|+. |+.... ...|..|++..+.
T Consensus 9 k~~~C~~----C~k~f~~~~~L~~H~~~H~~ 35 (42)
T 2el5_A 9 NPYECSE----CGKAFNRKDQLISHQRTHAG 35 (42)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHGGGCC
T ss_pred CCccCCC----cChhhCCHHHHHHHHHhcCC
Confidence 5788876 655543 5788889876443
No 259
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=1e+02 Score=17.72 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=17.6
Q ss_pred CcCccCCCCCCCCcccc-ChhhHHHHhhccCC
Q 021796 143 YRPYNCPYAGAECSVTG-DIPLLVRHLKNDHK 173 (307)
Q Consensus 143 ~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~ 173 (307)
-+|+.|+. |+... ....|..|++..+.
T Consensus 10 ~k~~~C~~----C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2ytn_A 10 KKPYKCNE----CGKVFTQNSHLARHRGIHTG 37 (46)
T ss_dssp CSSCBCTT----TCCBCSSHHHHHHHGGGTSC
T ss_pred CcCeECCC----CCCeeCCHHHHHHHhhhcCC
Confidence 36788886 55544 35788899765433
Done!