BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021797
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
           Synthase- Like Protein (yp_807781.1) From Lactobacillus
           Casei Atcc 334 At 1.85 A Resolution
 pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
           Synthase- Like Protein (yp_807781.1) From Lactobacillus
           Casei Atcc 334 At 1.85 A Resolution
          Length = 275

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 240 APRKGIIEVWQMRTGPRLLTIQCAKG 265
           A R  I E WQ++ G ++L I C +G
Sbjct: 30  AHRLAIAEAWQVKPGEKILEIGCGQG 55


>pdb|2C0N|A Chain A, Crystal Structure Of A197 From Stiv
          Length = 203

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 112 ILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSP 171
            L K+    F     +    W  E     S  KP+++A    L+ LK +    ERL LSP
Sbjct: 127 FLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHKPRTYA----LSSLKAYHFIDERLALSP 182

Query: 172 SGSLAAITDSLGRI 185
              L    D + RI
Sbjct: 183 DRKLILQNDHVARI 196


>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
 pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
          Length = 399

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 87  VTIGEDSVISAFRLSEDRS-RSLVGAILSKVVPATF------STISSLSKM-IWRSEQSP 138
           VT+GED  I+ FR     + R++  A  S +   TF       T++S+ ++ IW   Q  
Sbjct: 164 VTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQG 223

Query: 139 KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITD 180
            +            PL C+  HP +   +       + +I D
Sbjct: 224 NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD 265


>pdb|3OKZ|A Chain A, Crystal Structure Of Protein Gbs0355 From Streptococcus
           Agalactiae, Northeast Structural Genomics Consortium
           Target Sar127
 pdb|3OKZ|B Chain B, Crystal Structure Of Protein Gbs0355 From Streptococcus
           Agalactiae, Northeast Structural Genomics Consortium
           Target Sar127
          Length = 306

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 102 EDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPK-----KSEPKPQSFARASPLTC 156
           + R R ++  +L K++    ++ISS  K++     + +      S+  P   A    L  
Sbjct: 183 QKRQREVIQKVLKKILA--LNSISSYKKILSAVSNNXQTNIEISSKTIPNLLAYKDSLEH 240

Query: 157 LKDHPRKGERLTLSPSGSLAAIT 179
           +K +  KGE  TLS  GS   +T
Sbjct: 241 IKSYQLKGEDATLSDGGSYQILT 263


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,630,526
Number of Sequences: 62578
Number of extensions: 327843
Number of successful extensions: 644
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 6
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)