BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021797
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo
sapiens GN=RAB3GAP2 PE=1 SV=1
Length = 1393
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 40/291 (13%)
Query: 48 LPHQLWNVSKYGPCADAAITGLM---PPPLMEVQSSQRYFCA------------VTIGED 92
L ++ W + D A G+M P M+ S+ F A +T+G +
Sbjct: 251 LAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSN 310
Query: 93 SVISAFRLSEDRSRSLVG----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKP 145
F E ++ L+ A+ SK+ A F+ S + W+S E++ +K +PK
Sbjct: 311 PFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKV 368
Query: 146 QSFARASPLTC---LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY 202
+ A+PL L D R GE + LSP +LAA+TD GR++LLD + +R+WKGY
Sbjct: 369 EP---ATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGY 425
Query: 203 RDASCVFMEMLVN-KDAATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPR 256
RDA +++ + + + A ++P S L I+APR+GI+EVW + GPR
Sbjct: 426 RDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWSTQQGPR 485
Query: 257 LLTIQCAKGSKILQPTYRFG--SSMASSPYVP--LEVFLLNGDSGQLSVLN 303
+ K ++L P Y+ +++ S + P ++ L++ SG + +N
Sbjct: 486 VGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVN 536
>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus
musculus GN=Rab3gap2 PE=1 SV=2
Length = 1366
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 30/256 (11%)
Query: 48 LPHQLWNVSKYGPCADAAITGLM---PPPLMEVQSSQRYFCA------------VTIGED 92
L ++ W + D A G+M P M+ S+ F A +T+G
Sbjct: 249 LAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSS 308
Query: 93 SVISAFRLSEDRSRSLVG----AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSF 148
F E ++ L+ A+ SK+ A FS S + W+S+ + +
Sbjct: 309 PFTGFFYALEGSTQPLLSHVALAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKM 366
Query: 149 ARASPLTC---LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 205
A+PL L D R GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA
Sbjct: 367 EPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDA 426
Query: 206 SCVFMEMLVN-KDAATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLT 259
+++++ + + ++P S L I+APR+GI+EVW + GPR+
Sbjct: 427 QVGWIQIVEDLHERVPEKGGFSPFGNTQGPSRVAQFLVIYAPRRGILEVWNTQQGPRVGA 486
Query: 260 IQCAKGSKILQPTYRF 275
K ++L P Y+
Sbjct: 487 FNVGKHCRLLYPGYKI 502
>sp|Q5U1Z0|RBGPR_RAT Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus
norvegicus GN=Rab3gap2 PE=1 SV=2
Length = 1386
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 123/259 (47%), Gaps = 36/259 (13%)
Query: 48 LPHQLWNVSKYGPCADAAITGLM---PPPLMEVQSSQRYFCA------------VTIGED 92
L ++ W + D A G+M P M+ S+ F A +T+G
Sbjct: 249 LAYKKWGLQDIDTIIDHASIGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSS 308
Query: 93 SVISAFRLSEDRSRSLVG----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKP 145
F E ++ L+ A+ SK+ A FS S + W+S E++ +K +PK
Sbjct: 309 PFTGFFYALEGSTQPLLSHVALAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKM 366
Query: 146 QSFARASPLTC---LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY 202
+ A+PL L D R GE + LSP +LAA+TD GR++LLD + +R+WKGY
Sbjct: 367 EP---ATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGY 423
Query: 203 RDASCVFMEMLVN-KDAATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPR 256
RDA +++++ + + ++P S L I+APR+GI+EVW + GPR
Sbjct: 424 RDAQIGWIQIVEDLHERVPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPR 483
Query: 257 LLTIQCAKGSKILQPTYRF 275
+ K ++L P Y+
Sbjct: 484 VGAFNVGKHCRLLYPGYKI 502
>sp|Q9VKB9|RBGPR_DROME Rab3 GTPase-activating protein regulatory subunit OS=Drosophila
melanogaster GN=rab3-GAP PE=1 SV=2
Length = 1341
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 63 DAAITGLMPPPLMEVQSSQR----YFCAV-----------TIGEDSVISAFRLSEDRSRS 107
DAAI+ PP + Q YF V G + + F+ E
Sbjct: 213 DAAISTTQRPPTYDYIVQQTIGLGYFAKVHATPPRSSQVLAAGAEPYLGFFQAEEGYKTM 272
Query: 108 LVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKKSE-PKPQSFARASPLTCLKDHPRK 163
+G + V+ + + L + R+ + SP++S P P A L D R
Sbjct: 273 SLGEVAKDVIGIAYKNL--LGGIFRRAPEPLPSPEESPLPVPTKEAPMRIRCRLYDGKRD 330
Query: 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSA 223
G L+++P G LA +TD+L R++L+DT +++R+WKGYRDA C F+ + K+ +
Sbjct: 331 GLTLSVAPGGRLAVVTDNLDRVMLVDTHQAIILRVWKGYRDAQCAFVPV---KEKSVRGI 387
Query: 224 YYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 269
K+ L L I+APR G +++W ++ GP++ +K +++
Sbjct: 388 KTHKRKA---LFLVIYAPRMGCLDIWALQNGPKVAAFNVSKSGQLM 430
>sp|Q22670|RBGPR_CAEEL Rab3 GTPase-activating protein regulatory subunit OS=Caenorhabditis
elegans GN=rbg-2 PE=3 SV=1
Length = 1307
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 162 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS 221
R + ++ SP A+TD + R+L++D + VV ++KGYRDAS ++ + + A
Sbjct: 374 RVAQNVSRSPDCQYVAVTDRMARVLVIDIASRQVVLIFKGYRDASISWVSVTEDDRVAQ- 432
Query: 222 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264
L I APR+ ++EVW + R+ CA+
Sbjct: 433 -------------FLTIFAPRRSLLEVWTVLGNVRV----CAQ 458
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 149 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 205
ARA L LK H R E ++ SP A R++L D Q+ ++RL G+RD+
Sbjct: 93 ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDS 149
>sp|Q2RFN9|RPOB_MOOTA DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica
(strain ATCC 39073) GN=rpoB PE=3 SV=1
Length = 1141
Score = 34.7 bits (78), Expect = 0.94, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 146 QSFARASPLTCLKDHP--RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 203
Q F R++ TC+ P RKGER++ + + TD G L L LV W+GY
Sbjct: 625 QKFVRSNQGTCINQKPIVRKGERVSAGQTIADGPSTDQ-GE-LALGRNILVAFMTWEGYN 682
Query: 204 DASCVFM-EMLVNKDAATS 221
+ + E LV D TS
Sbjct: 683 YEDAILISEKLVKDDIFTS 701
>sp|Q85BW1|RPOB_ANTFO DNA-directed RNA polymerase subunit beta OS=Anthoceros formosae
GN=rpoB PE=2 SV=1
Length = 1071
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 139 KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 198
K+ E K + R++ TC+ + PR R + LA + G L L LV
Sbjct: 603 KEVETKLVIYQRSNNSTCIHEKPRIQLREYVKKGQILADGRATAGGELALGKNILVAYMP 662
Query: 199 WKGYRDASCVFM-EMLVNKDAATS 221
W+GY + + E L+++D TS
Sbjct: 663 WEGYNFEDAILISERLIHEDIYTS 686
>sp|Q5RJ54|ZN187_MOUSE Zinc finger protein 187 OS=Mus musculus GN=Znf187 PE=2 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 142 EPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRI 185
EP P+ AR P L P + + T S +G+L A TDS GR+
Sbjct: 145 EPAPRREAREQPGCALPQKPEERGKETRSENGNLIAGTDSCGRM 188
>sp|B3QC00|RPOB_RHOPT DNA-directed RNA polymerase subunit beta OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rpoB PE=3 SV=1
Length = 1374
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFME 211
PL + DH +KG+ + PS L + +LGR LV W GY + S + E
Sbjct: 779 PLVKVGDHVKKGDIIADGPSTDLGEL--ALGR------NVLVAFMPWNGYNFEDSILLSE 830
Query: 212 MLVNKDAATS 221
+V +D TS
Sbjct: 831 RIVKEDVFTS 840
>sp|Q6N4R9|RPOB_RHOPA DNA-directed RNA polymerase subunit beta OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rpoB PE=3
SV=1
Length = 1374
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFME 211
PL + DH +KG+ + PS L + +LGR LV W GY + S + E
Sbjct: 779 PLVKVGDHVKKGDIIADGPSTDLGEL--ALGR------NVLVAFMPWNGYNFEDSILLSE 830
Query: 212 MLVNKDAATS 221
+V +D TS
Sbjct: 831 RIVKEDVFTS 840
>sp|B4R8K5|RPOB_PHEZH DNA-directed RNA polymerase subunit beta OS=Phenylobacterium
zucineum (strain HLK1) GN=rpoB PE=3 SV=1
Length = 1356
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 128 SKMIWRSEQSPKKSEP-----KPQSFARASPLTCLKDHP--RKGERLTLS------PSGS 174
++++ R+ + S+P + Q F R++ TC+ P R G+++ PS
Sbjct: 737 TRIVVRATEETDPSKPGVDIYRLQKFQRSNTSTCINQRPLVRVGDKINAGDVIADGPSTE 796
Query: 175 LAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFMEMLVNKDAATS 221
L + +LGR ALV W GY + S + E +V D TS
Sbjct: 797 LGEL--ALGR------NALVAFMPWNGYNFEDSILISERIVRDDVFTS 836
>sp|P00514|KAP0_BOVIN cAMP-dependent protein kinase type I-alpha regulatory subunit
OS=Bos taurus GN=PRKAR1A PE=1 SV=2
Length = 380
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 13 IQKM-LQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPH----QLWNVSKYGPCADAAIT 67
+QK +Q +DS +P +R L +E+L Q+ N+ K G AD+
Sbjct: 21 VQKHNIQALLKDSIVQLCTARP-ERPMAFLREYFEKLEKEEAKQIQNLQKAGSRADSRED 79
Query: 68 GLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSL 127
+ PPP V +R A ISA +E+ + S V KV+P + T+++L
Sbjct: 80 EISPPPPNPVVKGRRRRGA--------ISAEVYTEEDAASYV----RKVIPKDYKTMAAL 127
Query: 128 SKMIWRS 134
+K I ++
Sbjct: 128 AKAIEKN 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,318,411
Number of Sequences: 539616
Number of extensions: 4224735
Number of successful extensions: 10249
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10234
Number of HSP's gapped (non-prelim): 21
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)