Query 021797
Match_columns 307
No_of_seqs 96 out of 112
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14655 RAB3GAP2_N: Rab3 GTPa 100.0 2.9E-73 6.3E-78 559.5 26.4 257 1-269 136-415 (415)
2 KOG2727 Rab3 GTPase-activating 100.0 5.8E-69 1.3E-73 554.4 16.5 290 1-306 150-464 (1244)
3 KOG0266 WD40 repeat-containing 97.1 0.0076 1.6E-07 60.4 12.6 86 153-257 238-323 (456)
4 cd00200 WD40 WD40 domain, foun 97.0 0.0095 2.1E-07 50.3 11.1 86 157-261 131-216 (289)
5 KOG0266 WD40 repeat-containing 97.0 0.014 3.1E-07 58.4 13.6 93 153-264 195-288 (456)
6 cd00200 WD40 WD40 domain, foun 96.9 0.023 5.1E-07 47.9 12.5 84 157-261 5-90 (289)
7 PTZ00421 coronin; Provisional 96.8 0.021 4.5E-07 58.5 13.1 93 153-264 117-210 (493)
8 KOG0649 WD40 repeat protein [G 96.8 0.0096 2.1E-07 56.8 9.5 90 163-271 116-205 (325)
9 KOG0299 U3 snoRNP-associated p 96.7 0.0037 7.9E-08 63.3 7.1 50 159-208 200-249 (479)
10 KOG0263 Transcription initiati 96.4 0.012 2.6E-07 62.4 8.2 82 153-253 569-650 (707)
11 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 0.052 1.1E-06 48.1 11.0 83 164-266 209-293 (300)
12 PTZ00421 coronin; Provisional 96.2 0.093 2E-06 53.8 13.8 81 157-256 164-249 (493)
13 PTZ00420 coronin; Provisional 95.9 0.18 3.9E-06 52.8 14.4 89 161-264 167-261 (568)
14 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 0.3 6.5E-06 43.2 13.9 78 165-261 34-112 (300)
15 KOG1446 Histone H3 (Lys4) meth 95.9 0.079 1.7E-06 51.5 10.5 87 161-263 187-273 (311)
16 KOG0271 Notchless-like WD40 re 95.8 0.065 1.4E-06 53.8 9.7 91 159-270 365-467 (480)
17 KOG0263 Transcription initiati 95.6 0.031 6.8E-07 59.4 7.3 91 152-261 526-616 (707)
18 KOG0271 Notchless-like WD40 re 95.6 0.06 1.3E-06 54.1 8.6 97 151-261 147-244 (480)
19 PTZ00420 coronin; Provisional 95.3 0.22 4.7E-06 52.2 12.3 93 153-265 117-210 (568)
20 KOG0296 Angio-associated migra 95.1 0.79 1.7E-05 45.8 14.6 145 157-304 102-272 (399)
21 KOG0279 G protein beta subunit 94.9 0.35 7.5E-06 46.9 11.4 98 157-271 101-209 (315)
22 KOG0639 Transducin-like enhanc 94.8 0.031 6.8E-07 57.7 4.3 77 162-258 510-587 (705)
23 KOG0272 U4/U6 small nuclear ri 94.6 0.2 4.4E-06 50.6 9.3 93 161-274 303-409 (459)
24 PLN00181 protein SPA1-RELATED; 94.6 0.24 5.3E-06 52.8 10.5 82 163-262 534-616 (793)
25 KOG0265 U5 snRNP-specific prot 94.5 0.15 3.2E-06 49.9 7.9 77 165-259 94-170 (338)
26 KOG0316 Conserved WD40 repeat- 94.4 0.17 3.6E-06 48.4 7.8 84 151-253 49-132 (307)
27 KOG0282 mRNA splicing factor [ 94.3 0.12 2.5E-06 53.0 7.0 111 157-301 210-326 (503)
28 KOG2727 Rab3 GTPase-activating 94.2 0.058 1.3E-06 59.0 4.8 117 2-128 158-290 (1244)
29 KOG0284 Polyadenylation factor 94.2 0.078 1.7E-06 53.5 5.3 87 163-268 182-268 (464)
30 TIGR02658 TTQ_MADH_Hv methylam 94.1 1 2.2E-05 44.6 13.1 76 170-265 8-98 (352)
31 KOG0315 G-protein beta subunit 94.0 0.32 6.9E-06 46.8 8.9 88 153-260 207-296 (311)
32 PF00400 WD40: WD domain, G-be 93.7 0.12 2.5E-06 33.4 3.8 36 154-189 4-39 (39)
33 KOG0286 G-protein beta subunit 93.6 1.4 3.1E-05 43.1 12.6 109 151-278 176-297 (343)
34 KOG0319 WD40-repeat-containing 93.2 0.69 1.5E-05 49.6 10.5 83 160-261 462-544 (775)
35 KOG0291 WD40-repeat-containing 93.1 1.6 3.5E-05 47.3 13.1 83 163-264 352-434 (893)
36 KOG0279 G protein beta subunit 93.1 0.79 1.7E-05 44.5 9.9 91 153-263 55-145 (315)
37 KOG1273 WD40 repeat protein [G 92.8 0.44 9.6E-06 47.1 7.9 86 158-263 21-106 (405)
38 PF02239 Cytochrom_D1: Cytochr 92.5 1.2 2.5E-05 44.0 10.6 80 165-263 40-119 (369)
39 PF08662 eIF2A: Eukaryotic tra 92.2 1.4 3E-05 39.4 9.8 81 163-262 102-188 (194)
40 KOG0291 WD40-repeat-containing 92.2 1.1 2.4E-05 48.5 10.4 99 157-276 51-167 (893)
41 KOG0277 Peroxisomal targeting 92.2 0.85 1.8E-05 44.0 8.7 95 151-264 94-190 (311)
42 TIGR02658 TTQ_MADH_Hv methylam 92.1 1.6 3.6E-05 43.2 11.1 91 169-273 53-156 (352)
43 KOG1407 WD40 repeat protein [F 92.0 0.62 1.3E-05 45.0 7.6 92 153-263 181-272 (313)
44 KOG0285 Pleiotropic regulator 91.7 3.9 8.4E-05 41.3 13.0 107 155-262 145-275 (460)
45 PRK03629 tolB translocation pr 91.5 2.7 5.9E-05 41.8 11.9 51 160-210 241-295 (429)
46 KOG1912 WD40 repeat protein [G 91.4 0.67 1.5E-05 50.4 7.9 68 173-258 79-149 (1062)
47 KOG0319 WD40-repeat-containing 91.3 0.91 2E-05 48.7 8.6 86 155-261 499-586 (775)
48 PF15492 Nbas_N: Neuroblastoma 91.1 0.33 7.2E-06 46.8 4.8 43 158-200 226-268 (282)
49 KOG0308 Conserved WD40 repeat- 90.9 1.3 2.8E-05 47.2 9.3 96 160-274 170-266 (735)
50 PLN00181 protein SPA1-RELATED; 90.9 3.3 7.2E-05 44.2 12.7 80 157-255 571-651 (793)
51 PF02239 Cytochrom_D1: Cytochr 90.8 1.9 4E-05 42.6 10.0 102 173-298 5-111 (369)
52 KOG0310 Conserved WD40 repeat- 90.7 1.6 3.4E-05 45.0 9.4 103 160-264 67-197 (487)
53 KOG1188 WD40 repeat protein [G 90.5 1.1 2.4E-05 44.5 7.9 71 174-263 41-113 (376)
54 KOG0318 WD40 repeat stress pro 89.9 1.8 3.9E-05 45.2 9.1 79 157-253 483-561 (603)
55 KOG0273 Beta-transducin family 89.7 0.52 1.1E-05 48.4 5.1 52 150-201 441-492 (524)
56 PF08662 eIF2A: Eukaryotic tra 89.5 3 6.6E-05 37.2 9.3 79 163-263 61-144 (194)
57 KOG0295 WD40 repeat-containing 89.4 5.6 0.00012 40.0 11.8 116 157-277 189-350 (406)
58 KOG0282 mRNA splicing factor [ 89.0 1 2.2E-05 46.3 6.6 67 164-250 435-503 (503)
59 KOG1240 Protein kinase contain 88.8 5.1 0.00011 45.7 12.1 92 157-263 1189-1284(1431)
60 KOG0316 Conserved WD40 repeat- 88.8 1.9 4.2E-05 41.3 7.8 86 164-266 186-271 (307)
61 KOG0318 WD40 repeat stress pro 88.5 9.6 0.00021 40.1 13.1 94 156-265 185-278 (603)
62 KOG0288 WD40 repeat protein Ti 87.3 1.2 2.7E-05 45.1 5.8 42 164-205 390-431 (459)
63 KOG0275 Conserved WD40 repeat- 86.6 1.7 3.7E-05 43.3 6.3 85 161-264 306-390 (508)
64 KOG0286 G-protein beta subunit 86.2 6.3 0.00014 38.8 9.8 79 163-261 99-183 (343)
65 PRK11028 6-phosphogluconolacto 86.1 20 0.00044 33.5 13.1 28 165-192 83-111 (330)
66 PRK11028 6-phosphogluconolacto 86.1 13 0.00029 34.7 11.9 27 166-192 179-206 (330)
67 KOG1539 WD repeat protein [Gen 85.8 3.8 8.3E-05 44.8 8.9 111 158-270 490-624 (910)
68 KOG0295 WD40 repeat-containing 85.4 4.6 9.9E-05 40.6 8.6 116 155-271 102-252 (406)
69 PRK01742 tolB translocation pr 85.1 3 6.4E-05 41.3 7.3 75 165-261 336-412 (429)
70 KOG1274 WD40 repeat protein [G 85.1 6.3 0.00014 43.5 10.1 117 164-305 99-218 (933)
71 KOG0264 Nucleosome remodeling 83.6 4.9 0.00011 40.9 8.1 72 161-252 272-347 (422)
72 KOG0281 Beta-TrCP (transducin 83.3 3.5 7.6E-05 41.5 6.8 103 163-265 237-361 (499)
73 KOG0280 Uncharacterized conser 83.3 7.4 0.00016 38.3 8.9 72 163-252 123-196 (339)
74 PRK02889 tolB translocation pr 82.9 16 0.00036 36.1 11.5 39 163-201 241-282 (427)
75 KOG0289 mRNA splicing factor [ 82.9 7.8 0.00017 39.9 9.1 82 164-262 306-387 (506)
76 PRK04792 tolB translocation pr 82.7 15 0.00033 36.9 11.3 47 163-209 263-313 (448)
77 KOG0296 Angio-associated migra 82.7 32 0.00069 34.8 13.1 87 154-261 57-145 (399)
78 PRK01742 tolB translocation pr 82.5 15 0.00033 36.3 11.1 39 163-201 249-290 (429)
79 COG2319 FOG: WD40 repeat [Gene 82.3 20 0.00043 31.3 10.5 84 157-258 151-235 (466)
80 KOG0267 Microtubule severing p 82.0 2.3 4.9E-05 45.9 5.3 82 157-257 150-231 (825)
81 KOG1408 WD40 repeat protein [F 81.8 2 4.4E-05 46.5 4.8 142 82-253 391-535 (1080)
82 KOG1446 Histone H3 (Lys4) meth 81.6 3.1 6.6E-05 40.8 5.6 39 165-203 236-274 (311)
83 KOG0306 WD40-repeat-containing 81.6 5.1 0.00011 43.6 7.6 89 153-260 99-187 (888)
84 KOG3914 WD repeat protein WDR4 81.4 3.9 8.4E-05 41.2 6.4 80 165-264 155-235 (390)
85 KOG0301 Phospholipase A2-activ 80.3 16 0.00034 39.5 10.7 102 154-278 172-277 (745)
86 smart00320 WD40 WD40 repeats. 80.2 3.7 8.1E-05 23.2 3.8 33 157-189 8-40 (40)
87 PRK04922 tolB translocation pr 79.6 34 0.00073 33.9 12.4 35 165-199 295-332 (433)
88 COG2706 3-carboxymuconate cycl 79.2 33 0.00072 34.3 11.9 112 163-302 146-283 (346)
89 PF02897 Peptidase_S9_N: Proly 79.2 32 0.00069 33.4 11.9 49 162-210 124-178 (414)
90 KOG1963 WD40 repeat protein [G 78.9 6.4 0.00014 42.9 7.4 78 164-256 208-285 (792)
91 KOG0285 Pleiotropic regulator 78.7 15 0.00034 37.1 9.5 82 164-264 238-319 (460)
92 KOG1034 Transcriptional repres 78.3 6.1 0.00013 39.4 6.5 72 173-262 105-176 (385)
93 KOG0294 WD40 repeat-containing 78.2 18 0.00039 36.0 9.7 97 153-269 75-174 (362)
94 KOG1407 WD40 repeat protein [F 77.9 10 0.00022 36.9 7.7 87 159-265 18-108 (313)
95 KOG0646 WD40 repeat protein [G 77.9 4.3 9.3E-05 41.7 5.5 69 163-251 83-152 (476)
96 TIGR02800 propeller_TolB tol-p 77.8 35 0.00077 32.7 11.7 42 157-198 185-229 (417)
97 KOG0305 Anaphase promoting com 77.4 19 0.00042 37.4 10.1 98 157-271 297-396 (484)
98 KOG0265 U5 snRNP-specific prot 77.2 22 0.00049 35.1 9.9 89 157-264 43-132 (338)
99 KOG0293 WD40 repeat-containing 76.4 11 0.00024 38.7 7.9 89 157-261 391-479 (519)
100 PRK00178 tolB translocation pr 75.5 43 0.00094 32.7 11.7 38 164-201 245-285 (430)
101 KOG0294 WD40 repeat-containing 74.8 23 0.0005 35.3 9.4 84 167-270 212-302 (362)
102 KOG1538 Uncharacterized conser 74.8 8.8 0.00019 41.7 6.9 40 163-204 14-54 (1081)
103 KOG1273 WD40 repeat protein [G 74.5 50 0.0011 33.2 11.6 41 157-197 61-101 (405)
104 COG4946 Uncharacterized protei 74.4 29 0.00062 36.5 10.3 81 163-263 403-487 (668)
105 PRK00178 tolB translocation pr 74.3 70 0.0015 31.3 12.8 42 157-198 194-238 (430)
106 KOG1274 WD40 repeat protein [G 73.9 3.6 7.8E-05 45.3 4.0 46 157-202 134-179 (933)
107 KOG0281 Beta-TrCP (transducin 73.9 2.7 5.8E-05 42.3 2.8 76 156-254 355-430 (499)
108 KOG1539 WD repeat protein [Gen 73.7 17 0.00038 40.0 8.9 43 157-199 572-614 (910)
109 PRK05137 tolB translocation pr 73.6 55 0.0012 32.4 12.0 38 164-201 292-332 (435)
110 KOG0272 U4/U6 small nuclear ri 72.7 13 0.00029 38.0 7.4 86 157-260 341-426 (459)
111 KOG2110 Uncharacterized conser 72.3 48 0.001 33.6 11.0 96 153-267 118-219 (391)
112 PF12894 Apc4_WD40: Anaphase-p 70.4 11 0.00025 26.7 4.7 30 164-194 14-43 (47)
113 KOG0308 Conserved WD40 repeat- 69.9 12 0.00026 40.3 6.5 96 152-261 108-210 (735)
114 PRK05137 tolB translocation pr 69.8 78 0.0017 31.3 12.1 42 157-198 197-241 (435)
115 KOG0293 WD40 repeat-containing 69.5 38 0.00082 35.0 9.8 50 162-211 270-322 (519)
116 PF06977 SdiA-regulated: SdiA- 69.4 9.8 0.00021 35.9 5.4 47 157-204 17-66 (248)
117 PRK03629 tolB translocation pr 69.0 34 0.00074 34.0 9.4 46 164-209 333-381 (429)
118 KOG0647 mRNA export protein (c 68.7 41 0.00089 33.4 9.5 81 165-266 76-159 (347)
119 PRK04922 tolB translocation pr 68.7 36 0.00078 33.7 9.5 45 165-209 339-386 (433)
120 KOG0771 Prolactin regulatory e 68.5 8.8 0.00019 38.9 5.1 46 163-211 283-328 (398)
121 TIGR02276 beta_rpt_yvtn 40-res 68.1 15 0.00032 23.8 4.7 29 171-199 1-30 (42)
122 KOG0313 Microtubule binding pr 67.9 37 0.00079 34.6 9.2 74 164-255 303-379 (423)
123 KOG0274 Cdc4 and related F-box 67.8 16 0.00035 38.2 7.1 84 160-265 330-414 (537)
124 PF10282 Lactonase: Lactonase, 67.6 1.2E+02 0.0026 29.1 13.5 27 165-191 195-222 (345)
125 KOG0264 Nucleosome remodeling 67.0 23 0.00049 36.2 7.7 41 153-193 308-349 (422)
126 KOG2096 WD40 repeat protein [G 66.2 28 0.00062 34.9 8.0 87 165-275 232-326 (420)
127 PRK01029 tolB translocation pr 66.2 44 0.00094 33.5 9.6 46 157-202 322-370 (428)
128 KOG2048 WD40 repeat protein [G 65.2 30 0.00065 37.3 8.4 88 157-262 150-243 (691)
129 COG3386 Gluconolactonase [Carb 63.6 1.1E+02 0.0023 29.8 11.4 133 157-304 158-297 (307)
130 KOG0275 Conserved WD40 repeat- 62.6 10 0.00022 38.1 4.2 90 161-261 213-302 (508)
131 KOG0315 G-protein beta subunit 62.4 16 0.00035 35.4 5.4 54 157-210 254-307 (311)
132 PRK02889 tolB translocation pr 62.2 64 0.0014 32.0 9.9 38 165-202 331-371 (427)
133 TIGR03300 assembly_YfgL outer 62.1 1.3E+02 0.0028 28.8 11.6 71 173-264 105-175 (377)
134 KOG0277 Peroxisomal targeting 62.0 33 0.00071 33.5 7.3 79 157-251 4-90 (311)
135 KOG1645 RING-finger-containing 62.0 19 0.00041 36.9 6.0 78 156-253 188-267 (463)
136 KOG0273 Beta-transducin family 61.3 56 0.0012 34.1 9.3 88 155-261 395-491 (524)
137 PF11768 DUF3312: Protein of u 61.0 44 0.00094 35.4 8.6 73 163-256 261-333 (545)
138 KOG0269 WD40 repeat-containing 60.5 9 0.0002 41.8 3.7 70 173-261 100-173 (839)
139 TIGR03300 assembly_YfgL outer 60.1 1.1E+02 0.0024 29.2 10.8 50 240-302 326-376 (377)
140 PF15492 Nbas_N: Neuroblastoma 60.0 19 0.00042 34.9 5.5 44 159-203 41-84 (282)
141 PF04841 Vps16_N: Vps16, N-ter 59.4 33 0.00073 34.3 7.3 101 161-277 216-320 (410)
142 PF13360 PQQ_2: PQQ-like domai 59.3 1.1E+02 0.0024 26.5 9.9 71 170-261 33-103 (238)
143 KOG2048 WD40 repeat protein [G 59.0 12 0.00027 40.1 4.3 32 164-195 478-509 (691)
144 PF10313 DUF2415: Uncharacteri 58.4 32 0.00069 24.4 5.0 30 165-194 4-36 (43)
145 KOG0267 Microtubule severing p 57.8 12 0.00026 40.6 4.1 49 157-205 66-114 (825)
146 KOG0646 WD40 repeat protein [G 57.1 8.4 0.00018 39.7 2.7 46 155-200 269-316 (476)
147 KOG0289 mRNA splicing factor [ 56.4 1.7E+02 0.0037 30.6 11.6 83 163-264 349-431 (506)
148 KOG4497 Uncharacterized conser 56.2 13 0.00028 37.4 3.7 115 167-302 14-150 (447)
149 KOG4328 WD40 protein [Function 55.8 99 0.0021 32.3 9.9 42 150-191 358-399 (498)
150 PLN02919 haloacid dehalogenase 55.5 1.5E+02 0.0032 33.7 12.2 36 164-199 742-778 (1057)
151 PRK11138 outer membrane biogen 55.4 1.7E+02 0.0037 28.4 11.4 52 240-304 341-393 (394)
152 KOG0641 WD40 repeat protein [G 54.9 21 0.00046 34.3 4.8 43 157-199 224-269 (350)
153 PF10282 Lactonase: Lactonase, 53.7 2.1E+02 0.0045 27.4 14.5 124 161-303 86-220 (345)
154 KOG0274 Cdc4 and related F-box 52.9 2.1E+02 0.0044 30.2 12.1 27 236-262 303-329 (537)
155 KOG0292 Vesicle coat complex C 51.7 87 0.0019 35.4 9.2 87 156-261 46-132 (1202)
156 KOG0288 WD40 repeat protein Ti 51.6 37 0.00079 34.9 6.1 98 155-271 213-310 (459)
157 KOG0321 WD40 repeat-containing 50.4 70 0.0015 34.6 8.1 123 160-303 143-299 (720)
158 KOG1408 WD40 repeat protein [F 50.3 44 0.00096 36.8 6.7 74 161-253 641-714 (1080)
159 KOG4283 Transcription-coupled 50.1 63 0.0014 32.3 7.3 72 164-253 146-220 (397)
160 PRK04792 tolB translocation pr 49.9 1E+02 0.0022 31.0 9.0 40 165-204 353-395 (448)
161 KOG0307 Vesicle coat complex C 49.8 16 0.00035 41.1 3.6 82 152-255 244-330 (1049)
162 KOG0302 Ribosome Assembly prot 49.3 1.1E+02 0.0025 31.2 9.1 85 158-262 254-345 (440)
163 TIGR02800 propeller_TolB tol-p 49.3 1.4E+02 0.003 28.6 9.6 33 163-195 323-358 (417)
164 KOG4283 Transcription-coupled 49.2 1.2E+02 0.0026 30.4 9.0 93 162-263 44-143 (397)
165 PF00780 CNH: CNH domain; Int 49.1 43 0.00093 30.3 5.8 35 235-272 240-274 (275)
166 KOG2695 WD40 repeat protein [G 48.9 41 0.0009 34.0 5.9 75 170-261 308-385 (425)
167 KOG1517 Guanine nucleotide bin 47.7 1E+02 0.0022 35.6 9.1 66 172-253 1220-1288(1387)
168 KOG0300 WD40 repeat-containing 47.6 69 0.0015 32.3 7.2 94 150-263 303-398 (481)
169 COG2319 FOG: WD40 repeat [Gene 47.5 1.9E+02 0.0041 25.1 11.5 90 157-261 61-152 (466)
170 KOG1036 Mitotic spindle checkp 47.3 2.9E+02 0.0062 27.5 11.3 107 163-269 15-150 (323)
171 KOG2055 WD40 repeat protein [G 46.8 3.7E+02 0.008 28.3 14.2 221 8-264 135-386 (514)
172 KOG2096 WD40 repeat protein [G 46.2 74 0.0016 32.0 7.1 85 155-264 80-164 (420)
173 PRK04043 tolB translocation pr 45.8 3.3E+02 0.0071 27.4 13.7 38 165-202 236-276 (419)
174 KOG0771 Prolactin regulatory e 44.9 78 0.0017 32.3 7.2 97 157-272 182-299 (398)
175 COG3041 Uncharacterized protei 43.9 7.6 0.00016 31.8 -0.0 10 198-207 53-62 (91)
176 PF00780 CNH: CNH domain; Int 43.0 2.5E+02 0.0055 25.3 11.0 115 164-303 38-173 (275)
177 PF07433 DUF1513: Protein of u 42.4 49 0.0011 32.5 5.3 39 161-199 216-255 (305)
178 KOG0299 U3 snoRNP-associated p 42.0 1.1E+02 0.0025 31.7 7.9 100 156-265 137-245 (479)
179 PF13360 PQQ_2: PQQ-like domai 41.9 1.7E+02 0.0038 25.3 8.3 62 175-258 175-236 (238)
180 KOG1334 WD40 repeat protein [G 40.6 23 0.0005 37.1 2.8 71 169-258 402-472 (559)
181 KOG2394 WD40 protein DMR-N9 [G 39.9 62 0.0014 34.4 5.8 78 163-260 292-369 (636)
182 KOG1064 RAVE (regulator of V-A 39.4 22 0.00049 42.6 2.8 70 163-261 2338-2407(2439)
183 KOG4190 Uncharacterized conser 39.3 20 0.00043 38.3 2.2 51 164-217 879-929 (1034)
184 KOG1009 Chromatin assembly com 39.0 1.5E+02 0.0032 30.6 8.1 102 154-261 58-162 (434)
185 KOG0305 Anaphase promoting com 37.4 1.1E+02 0.0024 32.0 7.1 42 161-202 217-258 (484)
186 KOG2110 Uncharacterized conser 36.9 82 0.0018 31.9 5.9 59 155-213 167-227 (391)
187 KOG0650 WD40 repeat nucleolar 36.3 70 0.0015 34.5 5.5 43 157-199 396-438 (733)
188 KOG0283 WD40 repeat-containing 35.0 1.3E+02 0.0029 32.9 7.5 79 161-256 501-580 (712)
189 cd06919 Asp_decarbox Aspartate 34.1 84 0.0018 26.7 4.7 20 244-263 41-60 (111)
190 KOG2106 Uncharacterized conser 34.0 2.8E+02 0.0062 29.6 9.4 98 157-269 100-205 (626)
191 KOG0640 mRNA cleavage stimulat 34.0 2.7E+02 0.0059 28.1 8.9 112 163-302 263-380 (430)
192 COG3391 Uncharacterized conser 33.4 92 0.002 30.6 5.7 45 165-209 163-214 (381)
193 PRK04043 tolB translocation pr 33.3 3.2E+02 0.0069 27.4 9.6 43 167-209 324-375 (419)
194 KOG0284 Polyadenylation factor 33.0 57 0.0012 33.6 4.1 79 157-254 134-212 (464)
195 KOG2111 Uncharacterized conser 32.7 3.9E+02 0.0084 26.9 9.7 56 157-212 177-234 (346)
196 KOG2114 Vacuolar assembly/sort 32.3 81 0.0018 35.2 5.4 46 167-213 29-74 (933)
197 TIGR01643 YD_repeat_2x YD repe 31.5 1.3E+02 0.0029 19.6 4.6 32 157-188 10-41 (42)
198 PF14408 Actino_peptide: Ribos 31.5 56 0.0012 24.7 3.0 22 166-187 5-26 (59)
199 KOG0278 Serine/threonine kinas 31.1 2.2E+02 0.0047 28.0 7.5 79 158-255 221-300 (334)
200 PF07893 DUF1668: Protein of u 30.9 93 0.002 30.4 5.2 37 159-197 64-100 (342)
201 PRK05449 aspartate alpha-decar 30.4 1.3E+02 0.0029 26.0 5.4 58 244-302 42-117 (126)
202 PF02393 US22: US22 like; Int 30.3 88 0.0019 25.3 4.2 28 171-198 79-106 (125)
203 PF11776 DUF3315: Domain of un 30.2 53 0.0011 23.8 2.6 37 157-198 15-52 (52)
204 PF01436 NHL: NHL repeat; Int 29.1 1E+02 0.0022 19.1 3.4 19 178-196 8-26 (28)
205 PF06433 Me-amine-dh_H: Methyl 27.7 4.2E+02 0.009 26.6 9.1 67 185-269 271-338 (342)
206 PLN02919 haloacid dehalogenase 27.5 4.3E+02 0.0093 30.1 10.3 82 165-256 807-892 (1057)
207 COG0853 PanD Aspartate 1-decar 27.3 1.1E+02 0.0025 26.4 4.5 27 244-270 41-69 (126)
208 COG4946 Uncharacterized protei 27.1 5.9E+02 0.013 27.2 10.3 57 236-305 384-441 (668)
209 KOG0276 Vesicle coat complex C 26.8 3.3E+02 0.0071 29.9 8.5 85 162-265 14-98 (794)
210 KOG0408 Mitochondrial/chloropl 26.7 93 0.002 28.4 4.0 30 164-193 81-110 (190)
211 PF01011 PQQ: PQQ enzyme repea 26.0 1.1E+02 0.0023 20.1 3.3 18 179-196 6-23 (38)
212 KOG0973 Histone transcription 25.8 88 0.0019 35.2 4.4 48 157-204 125-172 (942)
213 KOG0641 WD40 repeat protein [G 25.8 6.3E+02 0.014 24.6 11.1 118 157-294 134-283 (350)
214 TIGR00223 panD L-aspartate-alp 25.6 1.9E+02 0.004 25.2 5.5 58 244-302 42-117 (126)
215 PF06977 SdiA-regulated: SdiA- 25.1 1.2E+02 0.0026 28.6 4.7 39 160-199 169-208 (248)
216 PF05787 DUF839: Bacterial pro 24.3 2.1E+02 0.0045 30.0 6.7 50 163-212 437-509 (524)
217 KOG0640 mRNA cleavage stimulat 24.1 83 0.0018 31.6 3.5 104 153-261 163-300 (430)
218 KOG4378 Nuclear protein COP1 [ 23.7 4E+02 0.0086 28.6 8.3 79 156-253 116-196 (673)
219 KOG4547 WD40 repeat-containing 23.5 1.3E+02 0.0029 31.8 5.0 44 159-204 142-185 (541)
220 smart00564 PQQ beta-propeller 22.9 1.5E+02 0.0033 18.0 3.5 21 176-196 9-29 (33)
221 PF07453 NUMOD1: NUMOD1 domain 21.8 70 0.0015 20.9 1.8 22 184-206 2-23 (37)
222 PRK13616 lipoprotein LpqB; Pro 21.6 1.9E+02 0.004 30.8 5.8 49 159-210 445-505 (591)
223 PRK01029 tolB translocation pr 21.4 2E+02 0.0043 28.8 5.7 45 157-201 366-413 (428)
224 KOG4499 Ca2+-binding protein R 20.4 1.6E+02 0.0035 28.7 4.5 34 167-200 217-250 (310)
225 PF02897 Peptidase_S9_N: Proly 20.3 7.9E+02 0.017 23.7 12.5 69 235-303 338-412 (414)
226 KOG0322 G-protein beta subunit 20.2 83 0.0018 30.9 2.6 39 152-190 284-322 (323)
No 1
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=100.00 E-value=2.9e-73 Score=559.48 Aligned_cols=257 Identities=36% Similarity=0.550 Sum_probs=212.7
Q ss_pred CCceEEEEechhHHHHHHHHHHhhccccCCCCCccCCcccccCCCCCccccccccCCCcceeeeEEeccCCCCchhhh--
Q 021797 1 MPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQ-- 78 (307)
Q Consensus 1 y~~~i~~i~G~~l~~~L~~c~~q~~~~~~~~~~~~~~~~~~~~~~~~L~ykKW~~~~~~~i~Daa~~G~~~pp~~~~~-- 78 (307)
||++||+|||+||+++|++|++|++++.|+. .+ ...+++|+||||+|++++.|+|++++|+++|++|||.
T Consensus 136 y~~~v~~Idg~sL~~~L~~~~~~~~~~~~~~-------~~-~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~ 207 (415)
T PF14655_consen 136 YPSAVVIIDGFSLFSVLRACRNQVARGAASG-------SD-SPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVT 207 (415)
T ss_pred ECCEEEEEecHHHHHHHHHHHHhhhhhhhcc-------cc-cCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHh
Confidence 8999999999999999999999999984222 22 3457889999999999999999999999999999973
Q ss_pred ------------ccccceeEEEecCCceeEEEeecCCCCcchhhHHHhhhhh-HHHHHHHhhhhhhccC--CCCCCC-CC
Q 021797 79 ------------SSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVP-ATFSTISSLSKMIWRS--EQSPKK-SE 142 (307)
Q Consensus 79 ------------s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~a~~s~va~-Av~s~~~s~ak~~W~~--~~~~~~-~e 142 (307)
+...++++|++|++||+|||+++|+.+++ ++++|+. +|+++++++.+.+|+. +.++++ ++
T Consensus 208 aS~~gf~a~~~~s~~~~~~~i~~G~~P~v~f~~~~e~~s~~----~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~ 283 (415)
T PF14655_consen 208 ASIGGFNAKYRSSPPRMSRYITVGSSPFVSFYYASEGSSQP----LLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQE 283 (415)
T ss_pred hhcccccceeecCCcceEEEEEecCCceEEEEEccCCCCcc----cHHHHHHHHHHHHHHhhhHhhcccCCCCCcccccc
Confidence 34577899999999999999988877775 5667777 8888888876644433 332221 11
Q ss_pred -----CCCCCcccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccc
Q 021797 143 -----PKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD 217 (307)
Q Consensus 143 -----~~p~~~~~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~ 217 (307)
+++++.++....++|+|++|++++|++||+++|||+||+||||+|+|+++++|||||||||||||+|+++.++.+
T Consensus 284 ~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~ 363 (415)
T PF14655_consen 284 KQPPEPKPEPAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGD 363 (415)
T ss_pred ccccccCcCCCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccc
Confidence 122332222233679999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEe
Q 021797 218 AATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 269 (307)
Q Consensus 218 ~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll 269 (307)
+..+..+....+.+.+|||||||||||+||||+||||+||+||+|+|+||||
T Consensus 364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~~rLl 415 (415)
T PF14655_consen 364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKGCRLL 415 (415)
T ss_pred cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCCCcEEC
Confidence 5333334444556679999999999999999999999999999999999997
No 2
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-69 Score=554.44 Aligned_cols=290 Identities=46% Similarity=0.645 Sum_probs=237.0
Q ss_pred CCceEEEEechhHHHHHHHHHHhhccccCCCCCccCCcccccCCCCCcccccccc-CCCcceeeeEEec-cCCCCchhh-
Q 021797 1 MPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNV-SKYGPCADAAITG-LMPPPLMEV- 77 (307)
Q Consensus 1 y~~~i~~i~G~~l~~~L~~c~~q~~~~~~~~~~~~~~~~~~~~~~~~L~ykKW~~-~~~~~i~Daa~~G-~~~pp~~~~- 77 (307)
||.++|+|+|++|++.|.||++++++++ +.+ + .....++++||||.+ ++.+.+-++++++ ...||++|+
T Consensus 150 yp~~~~~I~g~sl~~~L~ncq~~Vqkaa------~Ek-n-sn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~ 221 (1244)
T KOG2727|consen 150 YPEICIVIPGVSLRFDLSNCQSMVQKAA------QEK-N-SNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQT 221 (1244)
T ss_pred ecceEEEECCchhhhhHHHHHHHHHHHH------Hhc-c-CCcCCccchhhhhhcccchhhccchheeecccCCccHHHh
Confidence 8999999999999999999999999983 221 1 122456799999999 6666544444444 477888888
Q ss_pred --h------------ccccceeEEEecCCceeEEEeecCCCCcchhhHHHhhhhhHHHHHHHhhhhhhccCCC---CCCC
Q 021797 78 --Q------------SSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKK 140 (307)
Q Consensus 78 --~------------s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~a~~s~va~Av~s~~~s~ak~~W~~~~---~~~~ 140 (307)
+ |..+|++++|+|++||++||+++|+.+++++++++.+|++++.+-+.|... +|.+++ +..+
T Consensus 222 vtas~~~gy~a~~k~SpPrySq~vt~ge~pf~gFf~a~eg~~~~llg~Vak~v~s~A~sn~asg~f-gi~~ep~~sp~~k 300 (1244)
T KOG2727|consen 222 VTASMPPGYLALQKPSPPRYSQAVTIGEDPFIGFFRASEGRGRSLLGAVAKKVVSAAASNIASGSF-GIWREPDQSPKRK 300 (1244)
T ss_pred hhcccCchhhhhccCCCcceeeeEEecCCceeeeeeeccccccccHHHHHHHhhhhhhhhhhhhee-eccCCCCcChhhc
Confidence 2 334778999999999999999999999987777776666665443333222 443443 3455
Q ss_pred CCCCCCCcccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccc
Q 021797 141 SEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAAT 220 (307)
Q Consensus 141 ~e~~p~~~~~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~ 220 (307)
++|++++..+++...+|+|.+|+|+.|++||+|+|||+||++|||+|+|+++++|||||||||||||+|+++.+..++
T Consensus 301 p~pk~~saapa~~R~~i~D~~R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~-- 378 (1244)
T KOG2727|consen 301 PEPKTQSAAPASSRTCIKDYPRKGEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGK-- 378 (1244)
T ss_pred CCCCCCcccccceeeccccCccccceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCC--
Confidence 667777766666667899999999999999999999999999999999999999999999999999999998876543
Q ss_pred cccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccC--CCCCcc---cEEEEEeCC
Q 021797 221 SSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMA--SSPYVP---LEVFLLNGD 295 (307)
Q Consensus 221 ~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~--~~~~~~---~~~~ll~~~ 295 (307)
.++.+.+.||||||||||||+||||.||+||||+||||+|+|+|+||+|++||.+. ++..+| +.|+|+||
T Consensus 379 ----s~~~~sRvAlFLvIyAPRrgiLEVW~~q~gpRV~AfnV~Ks~~Llypny~~gG~nnsssqs~~plt~~~clf~Dp- 453 (1244)
T KOG2727|consen 379 ----SEPVKSRVALFLVIYAPRRGILEVWQMQTGPRVLAFNVAKSSKLLYPNYRFGGNNNSSSQSCHPLTVFLCLFGDP- 453 (1244)
T ss_pred ----CccCcCceeEEEEEecccccHHHHHHhccCCeEEEEecCCccccccCcceecCCCCcCccccchhhhhhhhccCC-
Confidence 35677889999999999999999999999999999999999999999999999733 444555 68888999
Q ss_pred CCceEEEeccC
Q 021797 296 SGQLSVLNRSL 306 (307)
Q Consensus 296 ~g~l~~in~~~ 306 (307)
+|++++||+.+
T Consensus 454 ~Gsvk~In~PF 464 (1244)
T KOG2727|consen 454 KGSVKMINRPF 464 (1244)
T ss_pred CCceEEeccce
Confidence 89999999853
No 3
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0076 Score=60.43 Aligned_cols=86 Identities=30% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
.+..|..+.--..+++.+|.|++.+..+..|-|-++|+.++..+++++|+.+ .|....-. .+.
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----~is~~~f~-------------~d~ 300 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----GISGLAFS-------------PDG 300 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC----ceEEEEEC-------------CCC
Confidence 4455888888889999999999999999999999999999999999999999 44332211 122
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeE
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRL 257 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV 257 (307)
. +|+ -+-.+|.|.||++.+|.+.
T Consensus 301 ~-~l~-s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 301 N-LLV-SASYDGTIRVWDLETGSKL 323 (456)
T ss_pred C-EEE-EcCCCccEEEEECCCCcee
Confidence 2 233 3366999999999999965
No 4
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.05 E-value=0.0095 Score=50.28 Aligned_cols=86 Identities=23% Similarity=0.331 Sum_probs=62.1
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+......+..++.+|+++++++++..|.|.++|+.++..++.++++.+ .+....-. ++.. .
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~-------------~~~~--~ 191 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG----EVNSVAFS-------------PDGE--K 191 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc----ccceEEEC-------------CCcC--E
Confidence 445566789999999999999998899999999999999999987654 22111100 0111 2
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 237 AIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
++.+-.+|.|.+|+++.+..+..+.
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEecCCCcEEEEECCCCceecchh
Confidence 2344449999999999888777764
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.014 Score=58.44 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=76.3
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEc-CCceeEEeecccccceeeEEEEEecccccccccccCCCCCC
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDT-QALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 231 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~-~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 231 (307)
.+..+.+..+.+..++.+|++++++.+...+.|-++|+ ..+..+|..||+.+ ++-...=.. +
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p-----------~-- 257 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSP-----------D-- 257 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----ceEEEEecC-----------C--
Confidence 34557889999999999999999999999999999999 77899999999999 664332111 1
Q ss_pred cceEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 021797 232 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 232 ~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
. -|++-+-.++.|.||++++|..+..+..-.
T Consensus 258 -g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 258 -G-NLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred -C-CEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 1 278999999999999999988887777544
No 6
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.92 E-value=0.023 Score=47.89 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=63.3
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCCcce
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
|..++..+.+++.+|++++++++...|.|.++|+.++..++..+++... .+.|.. . ..
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~---~----------------~~- 64 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA---D----------------GT- 64 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC---C----------------CC-
Confidence 5566778999999999999999888999999999999888888887653 222221 1 01
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
+++.+-.+|.|.||+++++..+..+.
T Consensus 65 -~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 65 -YLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred -EEEEEcCCCeEEEEEcCcccceEEEe
Confidence 33455569999999999876666655
No 7
>PTZ00421 coronin; Provisional
Probab=96.79 E-value=0.021 Score=58.49 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCC
Q 021797 153 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 231 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 231 (307)
++..|..+.+.+..|+.+|++ .++|++...|.|.|+|+.++..++.++|+.+. |....-. ++
T Consensus 117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~s-------------pd 179 (493)
T PTZ00421 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWN-------------LD 179 (493)
T ss_pred ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEE-------------CC
Confidence 444577778889999999975 68888888999999999999999999998872 3221110 01
Q ss_pred cceEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 021797 232 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 232 ~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
. -+++.+..+|.|.||++++|..+..+....
T Consensus 180 G--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 180 G--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred C--CEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 1 255778899999999999999888776443
No 8
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.0096 Score=56.83 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=70.6
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
++..+.++|...-+..+-..|-++-+|+.+|.+-|.+||+-| .+......+.+ -=+.-..-
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~---------------~qilsG~E 176 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNAN---------------GQILSGAE 176 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccC---------------cceeecCC
Confidence 578899999654444444788999999999999999999999 77655432211 12345677
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEEecc
Q 021797 243 KGIIEVWQMRTGPRLLTIQCAKGSKILQP 271 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~ 271 (307)
+|.+.||++++++.|-++.+-|+-.+++|
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCc
Confidence 99999999999999999999888777775
No 9
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.75 E-value=0.0037 Score=63.25 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=45.9
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceee
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV 208 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~ 208 (307)
.+.+++.++++||+|+|+|..+-.-.|.++|..++.-+..|||+|++=.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee
Confidence 67889999999999999999998888999999999999999999996443
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.36 E-value=0.012 Score=62.43 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
..+.|.-+++.+++++.||+|++.|..|..|+|+|||+.+|..|...||+.+.=+ =+...-+ .
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~-SlsFS~d----------------g 631 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY-SLSFSRD----------------G 631 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee-EEEEecC----------------C
Confidence 3345788999999999999999999999999999999999999999999966322 2222111 1
Q ss_pred ceEEEEEcCCCCeEEEeecCC
Q 021797 233 CLCLAIHAPRKGIIEVWQMRT 253 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~ 253 (307)
-..+-+.-+..|.+||+..
T Consensus 632 --~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 --NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --CEEEecCCCCeEEEEEchh
Confidence 1345677799999999864
No 11
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.32 E-value=0.052 Score=48.08 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=56.5
Q ss_pred eeEEEECCCCCEEEEE-cCCCcEEEEEcCCceeEEeec-ccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 164 GERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 164 ~~~I~lsP~~~lAavt-DslGRV~LiD~~~~~ivRmWK-GyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
...|+.+|+++++.++ ...++|.++|+.++.+++... |..--.+.| .+ + . . +|++=+.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~-~----------g---~--~l~~~~~ 268 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF----TP-D----------E---K--YLLTTNG 268 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE----CC-C----------C---C--EEEEEcC
Confidence 3468899999875553 445799999999999987653 221111111 11 0 1 1 3444456
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCe
Q 021797 242 RKGIIEVWQMRTGPRLLTIQCAKGS 266 (307)
Q Consensus 242 rRg~lEVW~~~~G~RV~a~~v~~~~ 266 (307)
..|.|.||+++++..+..+.++++.
T Consensus 269 ~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 269 VSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEccccc
Confidence 7899999999999999999988653
No 12
>PTZ00421 coronin; Provisional
Probab=96.25 E-value=0.093 Score=53.76 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=60.4
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc---eeeEEEEEecccccccccccCCCCCCcc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYC 233 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 233 (307)
+......+.+|+.+|+|+++|++...|.|-++|+.++..++.++|+..+ .|.|.. . ..
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~---~----------------~~ 224 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK---R----------------KD 224 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC---C----------------CC
Confidence 5555667899999999999999999999999999999999999988764 455542 0 01
Q ss_pred eEEEEE--cCCCCeEEEeecCCCCe
Q 021797 234 LCLAIH--APRKGIIEVWQMRTGPR 256 (307)
Q Consensus 234 l~LVIy--aprRg~lEVW~~~~G~R 256 (307)
+++..- .-.+|.|.+|++++...
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCC
Confidence 122221 13478999999997653
No 13
>PTZ00420 coronin; Provisional
Probab=95.94 E-value=0.18 Score=52.82 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=60.8
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc---eeeEEEEEecccccccccccCCCCCCcceEEE
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 237 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LV 237 (307)
...+.+++.+|+|+++|++-..|.|.|+|+.++.+++.++|+... .+-|+..... + ...++.
T Consensus 167 ~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d--------------~~~IlT 231 (568)
T PTZ00420 167 PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-D--------------DNYILS 231 (568)
T ss_pred CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-C--------------CCEEEE
Confidence 346889999999999999888899999999999999999998763 4556542211 1 111222
Q ss_pred EEcCCC--CeEEEeecCC-CCeEEEEEecC
Q 021797 238 IHAPRK--GIIEVWQMRT-GPRLLTIQCAK 264 (307)
Q Consensus 238 IyaprR--g~lEVW~~~~-G~RV~a~~v~~ 264 (307)
.-.-+. +.|.||++++ +.-+..+....
T Consensus 232 tG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 232 TGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 222221 4799999995 44455555443
No 14
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.91 E-value=0.3 Score=43.21 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=53.5
Q ss_pred eEEEECCCCCEE-EEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 165 ERLTLSPSGSLA-AITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 165 ~~I~lsP~~~lA-avtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
..++++|+|+.+ ++....++|.++|+.++.+++.+....+. ..+....+ . . +|++-....
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~--------------g-~--~l~~~~~~~ 94 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--ELFALHPN--------------G-K--ILYIANEDD 94 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--cEEEECCC--------------C-C--EEEEEcCCC
Confidence 468999999865 55567899999999999998877653331 12211111 0 1 344555677
Q ss_pred CeEEEeecCCCCeEEEEE
Q 021797 244 GIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~ 261 (307)
+.|.+|+++++..+..+.
T Consensus 95 ~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CeEEEEECCCCeEEeEee
Confidence 899999999887776665
No 15
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.079 Score=51.54 Aligned_cols=87 Identities=22% Similarity=0.378 Sum_probs=67.6
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
.-+-+.|.-||||++..++++-+-+.|+|.-+|.++.-+-+|+.+.--=+++.=. ++. -+|+-.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft--------------Pds--~Fvl~g 250 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT--------------PDS--KFVLSG 250 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC--------------CCC--cEEEEe
Confidence 3456789999999999999999999999999999999999998866111221111 111 145666
Q ss_pred CCCCeEEEeecCCCCeEEEEEec
Q 021797 241 PRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 241 prRg~lEVW~~~~G~RV~a~~v~ 263 (307)
--+|.|-||++.+|.+|+.++-+
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEecCC
Confidence 67899999999999999999854
No 16
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.77 E-value=0.065 Score=53.84 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
-+.-...++..|||++|+|.+.-.--|=|+|-.+|.-+-.++|+=+| ||+|.. | .+ |
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-----D--------------sR--L 423 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-----D--------------SR--L 423 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-----C--------------cc--E
Confidence 34556789999999999999988899999999999999999999987 888873 2 12 7
Q ss_pred EEEcCCCCeEEEeecCC----------CCeEEEEEecCCeEEec
Q 021797 237 AIHAPRKGIIEVWQMRT----------GPRLLTIQCAKGSKILQ 270 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~----------G~RV~a~~v~~~~~Ll~ 270 (307)
++...++-.|+||++++ ..-|+++.-.+.+..+.
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 78999999999999985 45667776666655553
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.61 E-value=0.031 Score=59.39 Aligned_cols=91 Identities=21% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCC
Q 021797 152 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 231 (307)
Q Consensus 152 ~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 231 (307)
.|++.+-.+--....+..-||..|.|+--+.-+|=+||+.+|..||++-|++. =|.+..- +|-
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----~V~al~~----------Sp~--- 588 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----PVTALAF----------SPC--- 588 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----ceEEEEE----------cCC---
Confidence 35555555555678899999999999998999999999999999999999877 3333221 111
Q ss_pred cceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 232 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 232 ~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
..||+ -+--.|+|.||++.+|.+|..+.
T Consensus 589 -Gr~La-Sg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 589 -GRYLA-SGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred -CceEe-ecccCCcEEEEEcCCCcchhhhh
Confidence 11443 56679999999999999887654
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.55 E-value=0.06 Score=54.06 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=75.5
Q ss_pred CCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eeEEeecccccceeeEEEEEecccccccccccCCCC
Q 021797 151 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 229 (307)
Q Consensus 151 a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~-~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k 229 (307)
.+|++...-++--..+|+.||||+++|..--.|-|.|+|-.+| ++.|-.+|++- ||....=.- .|..|
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K----~It~Lawep-----~hl~p-- 215 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK----WITALAWEP-----LHLVP-- 215 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc----ceeEEeecc-----cccCC--
Confidence 3677767778888999999999999999999999999998776 57799999999 997654211 01111
Q ss_pred CCcceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 230 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 230 ~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
..+ ++-.+.++|.+.||++..|..+....
T Consensus 216 -~~r--~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 216 -PCR--RLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred -Ccc--ceecccCCCCEEEEEccCceEEEEec
Confidence 112 45678889999999999988887654
No 19
>PTZ00420 coronin; Provisional
Probab=95.33 E-value=0.22 Score=52.22 Aligned_cols=93 Identities=11% Similarity=-0.033 Sum_probs=63.7
Q ss_pred CCccccCCCceeeEEEECCCCCE-EEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCC
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 231 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~l-AavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 231 (307)
|+..|..+.+.+..|+.+|++.. +|++...|.|.|||+.++..+..++.. ..+.-+... ++
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsws----------------pd 178 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKWN----------------IK 178 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEEC----------------CC
Confidence 33346667788999999998865 456677899999999999887766532 122111111 01
Q ss_pred cceEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 021797 232 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 232 ~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
.. +++-+-.++.|.||++++|..+..+..-.+
T Consensus 179 G~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 179 GN--LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred CC--EEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 12 234466789999999999999888765444
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.08 E-value=0.79 Score=45.84 Aligned_cols=145 Identities=19% Similarity=0.138 Sum_probs=90.0
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccc-------cc-------cc-
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD-------AA-------TS- 221 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~-------~~-------~~- 221 (307)
|..++-.+..+.-|-+|.|.|+.|--|.|++++..++...+..- |-=..+-|+.-..... .+ .+
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 55567778889999999999999999999999999999877654 4555667775543221 00 00
Q ss_pred ---cc---ccC---CC--CCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccCCCCCcccEEE
Q 021797 222 ---SA---YYA---PV--KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVF 290 (307)
Q Consensus 222 ---~~---~~~---~~--k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~~~~~~~~ 290 (307)
+. +.. .+ -++.-..+.-|- +|+|.+|+..+|+-+..++-..+.-+-....+..+.-.-+.-..-++|
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 00 000 00 012222456666 999999999999998888844433222222222221000112336789
Q ss_pred EEeCCCCceEEEec
Q 021797 291 LLNGDSGQLSVLNR 304 (307)
Q Consensus 291 ll~~~~g~l~~in~ 304 (307)
+++..+|.+.-.|.
T Consensus 259 ~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNN 272 (399)
T ss_pred EEccccceEEEecC
Confidence 99887776665554
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=94.92 E-value=0.35 Score=46.93 Aligned_cols=98 Identities=13% Similarity=0.224 Sum_probs=79.3
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccc-ccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGy-RDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
|.-+.+...+++++|+++-++..-..--|.|+|+-..+.+.|=.+. || |+....- .|.+.. .
T Consensus 101 f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~----WVscvrf----------sP~~~~---p 163 (315)
T KOG0279|consen 101 FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE----WVSCVRF----------SPNESN---P 163 (315)
T ss_pred EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC----cEEEEEE----------cCCCCC---c
Confidence 7778899999999999999999888899999999999999999998 99 9976532 122212 3
Q ss_pred EEEEcCCCCeEEEeecCCCCe----------EEEEEecCCeEEecc
Q 021797 236 LAIHAPRKGIIEVWQMRTGPR----------LLTIQCAKGSKILQP 271 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~R----------V~a~~v~~~~~Ll~~ 271 (307)
.++-+.-++.|+||++++.+- |-+++|++.+-|.-.
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 678899999999999997553 556677777777644
No 22
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.82 E-value=0.031 Score=57.71 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=57.4
Q ss_pred ceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccccc-ceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 162 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 162 R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRD-Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
--+..++++||-+++-.+=+.|-|.+||+.+-.+||-+|||-| |.| |.+..++ .-.--.
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc--Idis~dG------------------tklWTG 569 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDISKDG------------------TKLWTG 569 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee--EEecCCC------------------ceeecC
Confidence 3456788999999888888889999999999999999999998 333 2211111 011224
Q ss_pred CCCCeEEEeecCCCCeEE
Q 021797 241 PRKGIIEVWQMRTGPRLL 258 (307)
Q Consensus 241 prRg~lEVW~~~~G~RV~ 258 (307)
..++.|..||+|+|..+.
T Consensus 570 GlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred CCccceeehhhhhhhhhh
Confidence 458899999999998764
No 23
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.59 E-value=0.2 Score=50.64 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=68.7
Q ss_pred CceeeEEEECCCCCEEEEE--cCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEE
Q 021797 161 PRKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 238 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavt--DslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVI 238 (307)
.+...+|+--|+|.||++. |++||| +|+.+|.-|-..-|+=+.=. =+... +.-|.++
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~-~V~fs------------------PNGy~lA 361 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEIL-SVAFS------------------PNGYHLA 361 (459)
T ss_pred ccccceeEecCCCceeeccCccchhhe--eecccCcEEEEeccccccee-eEeEC------------------CCceEEe
Confidence 4567789999999999994 999996 89999999998888766211 11110 1227888
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEe------------cCCeEEeccCcc
Q 021797 239 HAPRKGIIEVWQMRTGPRLLTIQC------------AKGSKILQPTYR 274 (307)
Q Consensus 239 yaprRg~lEVW~~~~G~RV~a~~v------------~~~~~Ll~~~~~ 274 (307)
-..-+++..||++|--.-++++-. ..|+.|+.++|-
T Consensus 362 Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 889999999999997777666542 246677766554
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.56 E-value=0.24 Score=52.76 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred eeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 163 KGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 163 ~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
.+.+++.+| +++++|+++..|.|.|||+.++..++.++|+.+. |....-. ..+. -+++-+.
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~------------p~~~--~~L~Sgs 595 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYS------------SADP--TLLASGS 595 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC----EEEEEEc------------CCCC--CEEEEEc
Confidence 466788877 5789999999999999999999999999999873 2211100 0011 1456667
Q ss_pred CCCeEEEeecCCCCeEEEEEe
Q 021797 242 RKGIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 242 rRg~lEVW~~~~G~RV~a~~v 262 (307)
.+|.|.||+++++..+..+..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec
Confidence 799999999999988877764
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.53 E-value=0.15 Score=49.85 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=62.3
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCC
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 244 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg 244 (307)
-.+.-.++++-+..+-..-||..+|+++|..+|=.||+-+ ++....+. ++.+.||.-+.-+|
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~----~vNs~~p~--------------rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS----FVNSLDPS--------------RRGPQLVCSGSDDG 155 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc----eeeecCcc--------------ccCCeEEEecCCCc
Confidence 3455667788888888889999999999999999999998 88766542 35678999999999
Q ss_pred eEEEeecCCCCeEEE
Q 021797 245 IIEVWQMRTGPRLLT 259 (307)
Q Consensus 245 ~lEVW~~~~G~RV~a 259 (307)
.+.|||||....+-+
T Consensus 156 t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKT 170 (338)
T ss_pred eEEEEeecccchhhc
Confidence 999999995444333
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.42 E-value=0.17 Score=48.36 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCC
Q 021797 151 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 151 a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
.+.+....-..+++....++-++.-+|..-..--|.+||+.+|.++|=|.|+ +||+-=+...|+.
T Consensus 49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNees-------------- 113 (307)
T KOG0316|consen 49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH-LAQVNTVRFNEES-------------- 113 (307)
T ss_pred cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-cceeeEEEecCcc--------------
Confidence 4556667888999999999998877777666778999999999999999998 6777666654331
Q ss_pred CcceEEEEEcCCCCeEEEeecCC
Q 021797 231 DYCLCLAIHAPRKGIIEVWQMRT 253 (307)
Q Consensus 231 ~~~l~LVIyaprRg~lEVW~~~~ 253 (307)
-.|..+.-+..+.+|++|.
T Consensus 114 ----SVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 114 ----SVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred ----eEEEeccccceeEEEEccc
Confidence 2566777788899999885
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.33 E-value=0.12 Score=52.97 Aligned_cols=111 Identities=20% Similarity=0.312 Sum_probs=81.7
Q ss_pred ccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCC-ceeEEeecccccce--eeEEEEEecccccccccccCCCCCCc
Q 021797 157 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 157 l~D~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~-~~ivRmWKGyRDAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
+.+++.-+.+|...| .+.|++..-..|.|.|+|+-. +..||-+.|++.+= ..|-+ +.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-------------------~g 270 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-------------------CG 270 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-------------------cC
Confidence 677777788999999 899999999999999999998 99999999998731 11111 11
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccCCCCCcc--cEEEEEeCCCCceEE
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVP--LEVFLLNGDSGQLSV 301 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~~~~--~~~~ll~~~~g~l~~ 301 (307)
.-| .-+.-++.|.+||+.+|+.+..|+.++--.-+ .+|| ++.+|..++||.|+.
T Consensus 271 ~~f--LS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv-------------kf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 271 TSF--LSASFDRFLKLWDTETGQVLSRFHLDKVPTCV-------------KFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred Cee--eeeecceeeeeeccccceEEEEEecCCCceee-------------ecCCCCCcEEEEecCCCcEEE
Confidence 113 56778999999999999999999955321111 2344 466666677776653
No 28
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.058 Score=58.99 Aligned_cols=117 Identities=34% Similarity=0.549 Sum_probs=80.9
Q ss_pred CceEEEEechhHHHHHHHHHHhhccccCCCCCccCCcccccCCCCCccccccccCCCcceeeeEEeccC----------C
Q 021797 2 PGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLM----------P 71 (307)
Q Consensus 2 ~~~i~~i~G~~l~~~L~~c~~q~~~~~~~~~~~~~~~~~~~~~~~~L~ykKW~~~~~~~i~Daa~~G~~----------~ 71 (307)
|+...+.|+...+.+.+...++.+...|+++.+.++.....+-..+|+|..|+..+-.++-|..+.+++ +
T Consensus 158 ~g~sl~~~L~ncq~~Vqkaa~Eknsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~vtas~~~gy~a~~k~S 237 (1244)
T KOG2727|consen 158 PGVSLRFDLSNCQSMVQKAAQEKNSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTVTASMPPGYLALQKPS 237 (1244)
T ss_pred CCchhhhhHHHHHHHHHHHHHhccCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhhhcccCchhhhhccCC
Confidence 567778899999999999999999999999998887555455568899999999888888888877765 3
Q ss_pred CCchhh--hcc-c---cceeEEEecCCceeEEEeecCCCCcchhhHHHhhhhhHHHHHHHhhh
Q 021797 72 PPLMEV--QSS-Q---RYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLS 128 (307)
Q Consensus 72 pp~~~~--~s~-~---~~~~~i~vG~~P~la~y~~~~~~~~s~~~a~~s~va~Av~s~~~s~a 128 (307)
||.+.+ ..+ + ++|.+--=-..|.++- ....++|-+++-.++..++..
T Consensus 238 pPrySq~vt~ge~pf~gFf~a~eg~~~~llg~----------Vak~v~s~A~sn~asg~fgi~ 290 (1244)
T KOG2727|consen 238 PPRYSQAVTIGEDPFIGFFRASEGRGRSLLGA----------VAKKVVSAAASNIASGSFGIW 290 (1244)
T ss_pred CcceeeeEEecCCceeeeeeeccccccccHHH----------HHHHhhhhhhhhhhhheeecc
Confidence 777777 222 2 4443322122232221 122355556666666676664
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.15 E-value=0.078 Score=53.46 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=66.4
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
.+..++.||+-..++.+-..|+|.|+|.....-=|+..|+ +|-....+-. |.| -|+.-+.+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-----gwdVksvdWH---------P~k-----gLiasgsk 242 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-----GWDVKSVDWH---------PTK-----GLIASGSK 242 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-----CCCcceeccC---------Ccc-----ceeEEccC
Confidence 4667899998777777777899999999988887777665 2332222211 112 48899999
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEE
Q 021797 243 KGIIEVWQMRTGPRLLTIQCAKGSKI 268 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~~v~~~~~L 268 (307)
+.+|++||.++|.+|++.+.-|++.|
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred CceeEeecCCCcchhhhhhhccceEE
Confidence 99999999999999999998887654
No 30
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.15 E-value=1 Score=44.61 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=58.7
Q ss_pred CC-CCCEEEEEcCC-----CcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC--
Q 021797 170 SP-SGSLAAITDSL-----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP-- 241 (307)
Q Consensus 170 sP-~~~lAavtDsl-----GRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap-- 241 (307)
-| +++++-++|.- |||.+||..++.++.|+..-+..+. + + ..| .. +|.+=.+
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~-~--spD-------------g~--~lyva~~~~ 67 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--V-V--ASD-------------GS--FFAHASTVY 67 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--e-E--CCC-------------CC--EEEEEeccc
Confidence 44 78899999986 9999999999999999987665553 2 1 111 11 3456566
Q ss_pred -------CCCeEEEeecCCCCeEEEEEecCC
Q 021797 242 -------RKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 242 -------rRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
+.+.|+|||++++.-+.-+.++..
T Consensus 68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 68 SRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred cccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 889999999999999988887655
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.05 E-value=0.32 Score=46.78 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceee--EEEEEecccccccccccCCCCC
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV--FMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~--Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
|++-|.-..|++.+.-+||+++|.|++.+.--|-++++.+. +|+-+--+|+ |+.--.=. .
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS-------------~ 268 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFS-------------A 268 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeec-------------c
Confidence 33347778999999999999999999999999999999987 3444444444 87632211 1
Q ss_pred CcceEEEEEcCCCCeEEEeecCCCCeEEEE
Q 021797 231 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTI 260 (307)
Q Consensus 231 ~~~l~LVIyaprRg~lEVW~~~~G~RV~a~ 260 (307)
+. .|||- +..++...+|++..|+.|...
T Consensus 269 dg-~YlvT-assd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 269 DG-EYLVT-ASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred Cc-cEEEe-cCCCCceeecccccCceeeec
Confidence 11 15655 555799999999999977653
No 32
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=93.69 E-value=0.12 Score=33.42 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=32.5
Q ss_pred CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEE
Q 021797 154 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLD 189 (307)
Q Consensus 154 l~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD 189 (307)
+..|......+.+|+.+|+++++|++...|.|.++|
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 445788889999999999999999999999999987
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=93.60 E-value=1.4 Score=43.12 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCCccccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCC
Q 021797 151 ASPLTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 229 (307)
Q Consensus 151 a~pl~~l~D~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k 229 (307)
+-....|.++.-.+-+|.++| ++++++..--.+--.|+|+..+..++++-|+-. .+-=+..+.+++
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~------------ 242 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGD------------ 242 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCC------------
Confidence 334456889999999999999 899999988888889999999999999988854 111111111110
Q ss_pred CCcceEEEEEcCCCCeEEEeecCCCCeEEEEE------------ecCCeEEeccCcccccc
Q 021797 230 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ------------CAKGSKILQPTYRFGSS 278 (307)
Q Consensus 230 ~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~------------v~~~~~Ll~~~~~~~~~ 278 (307)
=+.--.-++...++++|..+-++.+. -++.+|||.++|.=..+
T Consensus 243 ------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 243 ------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTC 297 (343)
T ss_pred ------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCce
Confidence 11222334555666666655555443 45678888777664443
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.19 E-value=0.69 Score=49.65 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=65.3
Q ss_pred CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEE
Q 021797 160 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 239 (307)
Q Consensus 160 ~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIy 239 (307)
+..++.+++++|+.+|+|+.--.--.=|+|+.++.++-+.+|+|.- -|-.-+... | -++--
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~--------------d---q~laT 522 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKN--------------D---QLLAT 522 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc--eEEEEeccc--------------c---ceeEe
Confidence 3577999999999999999866666677777799999999999982 133222221 2 25667
Q ss_pred cCCCCeEEEeecCCCCeEEEEE
Q 021797 240 APRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 240 aprRg~lEVW~~~~G~RV~a~~ 261 (307)
+.-+..|+||.+.++.++-+|.
T Consensus 523 ~SgD~TvKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKTFE 544 (775)
T ss_pred ccCCceEEEEEeccceeeeeec
Confidence 7789999999999999999998
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.12 E-value=1.6 Score=47.25 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=61.1
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
...+++.||||++.|+.-..|.|=++|++.|..+--+-=+-.+--+.--. . ....+.-+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~------------------~g~~llssSL 412 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-A------------------RGNVLLSSSL 412 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-e------------------cCCEEEEeec
Confidence 46789999999999999999999999999987665553333322221111 0 1135678889
Q ss_pred CCeEEEeecCCCCeEEEEEecC
Q 021797 243 KGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~~v~~ 264 (307)
+|.|..||+..++.--+|+.+.
T Consensus 413 DGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred CCeEEeeeecccceeeeecCCC
Confidence 9999999999988888887554
No 36
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=93.10 E-value=0.79 Score=44.53 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=66.9
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
|+..|.-+--.++.+.++|+|++|...-..|-+.|+|+.+|.--|.+-|+-.- =+.+.-+.|+
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d---Vlsva~s~dn-------------- 117 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD---VLSVAFSTDN-------------- 117 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc---eEEEEecCCC--------------
Confidence 33335455667888999999999999999999999999999999999998541 1122112111
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~ 263 (307)
. -++-..|+..|.+|++. |.+.+++.=+
T Consensus 118 ~--qivSGSrDkTiklwnt~-g~ck~t~~~~ 145 (315)
T KOG0279|consen 118 R--QIVSGSRDKTIKLWNTL-GVCKYTIHED 145 (315)
T ss_pred c--eeecCCCcceeeeeeec-ccEEEEEecC
Confidence 1 34788899999999996 6666666533
No 37
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=0.44 Score=47.11 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=66.9
Q ss_pred cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEE
Q 021797 158 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 237 (307)
Q Consensus 158 ~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LV 237 (307)
.|..- .+++..+|+|.+.|+.=..|||+++|..+..+-||.-|+=.+=|.=-.. ++.+ +.
T Consensus 21 ld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS-----------------~dgr--~L 80 (405)
T KOG1273|consen 21 LDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS-----------------RDGR--KL 80 (405)
T ss_pred ccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec-----------------CCCC--Ee
Confidence 34333 8999999999999999999999999999999999998876643332221 1122 44
Q ss_pred EEcCCCCeEEEeecCCCCeEEEEEec
Q 021797 238 IHAPRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 238 IyaprRg~lEVW~~~~G~RV~a~~v~ 263 (307)
.-+.|+..+..|++..|..+.-|..+
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEcc
Confidence 67889999999999999888877754
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=92.52 E-value=1.2 Score=44.02 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=51.4
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCC
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 244 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg 244 (307)
..+..+|+|+++-++...|.|.+||+.++.+++-.|--.++.. +.+..+ + +.++-.-|. .+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~--i~~s~D------------G---~~~~v~n~~--~~ 100 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG--IAVSPD------------G---KYVYVANYE--PG 100 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE--EEE--T------------T---TEEEEEEEE--TT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce--EEEcCC------------C---CEEEEEecC--CC
Confidence 4467899999999998889999999999999998887777544 222111 1 122222333 47
Q ss_pred eEEEeecCCCCeEEEEEec
Q 021797 245 IIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 245 ~lEVW~~~~G~RV~a~~v~ 263 (307)
.+.|+|.++.+-+..+.++
T Consensus 101 ~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEETTT--EEEEEE--
T ss_pred ceeEeccccccceeecccc
Confidence 8888888888777777654
No 39
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=92.24 E-value=1.4 Score=39.38 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=54.8
Q ss_pred eeeEEEECCCCCEEEEE--cCC-CcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEE
Q 021797 163 KGERLTLSPSGSLAAIT--DSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 239 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavt--Dsl-GRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIy 239 (307)
....|.-||+|+++|++ +++ |.|-++|+.+...|.-.+-.---.|.|-. + . +.+.-+.-
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP-----d------------G-r~~~ta~t 163 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP-----D------------G-RYLATATT 163 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC-----C------------C-CEEEEEEe
Confidence 34579999999999986 355 99999999999998877655444444431 1 1 12122233
Q ss_pred cCC---CCeEEEeecCCCCeEEEEEe
Q 021797 240 APR---KGIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 240 apr---Rg~lEVW~~~~G~RV~a~~v 262 (307)
+|| .+-+.||+. +|..+.....
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEecch
Confidence 344 366889999 5998887664
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.18 E-value=1.1 Score=48.48 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=67.4
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
-.|.+-.+.+|++||+|+++.++|--||.+|+.+.+..+++-++=-|-.+| |+...+ .. |+
T Consensus 51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~--i~fSPn----------------g~-~f 111 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGA--IKFSPN----------------GK-FF 111 (893)
T ss_pred EeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccce--EEECCC----------------Cc-EE
Confidence 356677899999999999999999999999999999999976644444222 222111 11 43
Q ss_pred EEEcCCCCeEEEeecCCCCe------------------EEEEEecCCeEEeccCcccc
Q 021797 237 AIHAPRKGIIEVWQMRTGPR------------------LLTIQCAKGSKILQPTYRFG 276 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~R------------------V~a~~v~~~~~Ll~~~~~~~ 276 (307)
++ ..-++||||....-.| |..+.=.-.+|+|-.+++=+
T Consensus 112 av--~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~ 167 (893)
T KOG0291|consen 112 AV--GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDL 167 (893)
T ss_pred EE--EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccc
Confidence 33 4567889998875444 34444556777776655533
No 41
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=0.85 Score=44.01 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=71.3
Q ss_pred CCCCccccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCC
Q 021797 151 ASPLTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 229 (307)
Q Consensus 151 a~pl~~l~D~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k 229 (307)
+.|++++.+++|++.++--.+ +++-..++.=.|-|=|+|-.+..-|+-++|+++.=.+=+ ..+
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~--~sp-------------- 157 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA--FSP-------------- 157 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe--cCC--------------
Confidence 568999999999999999999 456666677789999999999999999999988421111 111
Q ss_pred CCcceEEEEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 021797 230 SDYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCAK 264 (307)
Q Consensus 230 ~~~~l~LVIyaprRg~lEVW~~~~-G~RV~a~~v~~ 264 (307)
... =|+-++.-+|.+.+|+++. |.+.. |.+..
T Consensus 158 ~~~--nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~ 190 (311)
T KOG0277|consen 158 HIP--NLFASASGDGTLRLWDVRSPGKFMS-IEAHN 190 (311)
T ss_pred CCC--CeEEEccCCceEEEEEecCCCceeE-EEecc
Confidence 112 2668999999999999987 44433 55443
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.13 E-value=1.6 Score=43.19 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=60.7
Q ss_pred ECCCCCEEEEEcC----------CCcEEEEEcCCceeEEeeccccc--ceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 169 LSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRD--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 169 lsP~~~lAavtDs----------lGRV~LiD~~~~~ivRmWKGyRD--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+||+|+.+.++.+ -+.|.+||++++.+++-..-=-+ +|++=... ...-++ ..+ +|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~---------~~~ls~--dgk--~l 119 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW---------MTSLTP--DNK--TL 119 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc---------eEEECC--CCC--EE
Confidence 9999988777666 69999999999999986541111 11110000 000000 112 45
Q ss_pred EEEcCC-CCeEEEeecCCCCeEEEEEecCCeEEeccCc
Q 021797 237 AIHAPR-KGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 273 (307)
Q Consensus 237 VIyapr-Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~ 273 (307)
.|+-=- .+.|-|.|+.++..+..+.| ++|.++|++.
T Consensus 120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~ 156 (352)
T TIGR02658 120 LFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTA 156 (352)
T ss_pred EEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEec
Confidence 555533 89999999999999999999 5599999863
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=92.01 E-value=0.62 Score=45.03 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=66.9
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
|+..|.-++-.+..|..+|+|+++|+.-...-|.|+|+..++.+|+.- .+-|=.-... - ..+.
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-----RldwpVRTlS---F---------S~dg 243 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-----RLDWPVRTLS---F---------SHDG 243 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-----cccCceEEEE---e---------ccCc
Confidence 445566667778899999999999998888889999999999999972 2223211110 0 0011
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~ 263 (307)
. +.-.|.-+..|+|=.+++|.||.-+.+.
T Consensus 244 ~--~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 244 R--MLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred c--eeeccCccceEEeEecccCCeEEEeecc
Confidence 1 3356788899999999999999988853
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.72 E-value=3.9 Score=41.26 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=69.5
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEe--------ccccc-------
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLV--------NKDAA------- 219 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~--------~~~~~------- 219 (307)
..|.-+---+.+|.++|.+.|++.....+-|=++|+++|...--.-|+-. +|-=+-+.. ..|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEech
Confidence 44777778899999999999999999999999999999999888777643 111111100 00110
Q ss_pred ccc-c--ccCCCC------CCcceEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 021797 220 TSS-A--YYAPVK------SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 220 ~~~-~--~~~~~k------~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v 262 (307)
.++ + .++.-. -++.|=.++-+.|+..+.|||||+-.-|.++.-
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 000 0 001000 011222344488999999999999988888763
No 45
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.45 E-value=2.7 Score=41.77 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=35.8
Q ss_pred CCceeeEEEECCCCCEEEEE-cCCC--cEEEEEcCCceeEEeeccc-ccceeeEE
Q 021797 160 HPRKGERLTLSPSGSLAAIT-DSLG--RILLLDTQALVVVRLWKGY-RDASCVFM 210 (307)
Q Consensus 160 ~~R~~~~I~lsP~~~lAavt-DslG--RV~LiD~~~~~ivRmWKGy-RDAqc~Wi 210 (307)
.++.......||+|+.++.+ +..| +|.++|+.++.+.++..+. .+....|.
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wS 295 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF 295 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEEC
Confidence 34444567899999877664 5455 6999999999998888763 33444443
No 46
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=91.43 E-value=0.67 Score=50.39 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCceeEEeecccc-c--ceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEe
Q 021797 173 GSLAAITDSLGRILLLDTQALVVVRLWKGYR-D--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVW 249 (307)
Q Consensus 173 ~~lAavtDslGRV~LiD~~~~~ivRmWKGyR-D--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW 249 (307)
.=+.|++|-.|||+|+|...+.++- |=-.- | -++.|+...... +.+.|+||.| ..|-+|
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~S---------------rd~LlaIh~s--s~lvLw 140 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVIN-WLSHSNDSVQDLCWVPARDDS---------------RDVLLAIHGS--STLVLW 140 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhh-hhcCCCcchhheeeeeccCcc---------------hheeEEecCC--cEEEEE
Confidence 4578899999999999998876543 31111 1 245566543221 2458999998 688999
Q ss_pred ecCCCCeEE
Q 021797 250 QMRTGPRLL 258 (307)
Q Consensus 250 ~~~~G~RV~ 258 (307)
+..+|.++-
T Consensus 141 ntdtG~k~W 149 (1062)
T KOG1912|consen 141 NTDTGEKFW 149 (1062)
T ss_pred EccCCceee
Confidence 999998864
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.28 E-value=0.91 Score=48.74 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=72.3
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCCc
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
..|.-++|..-++.-||+.++.|++...+-|=++.+.+...+.-+.|++.| .|.|+. + .+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~---~------------~~--- 560 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR---N------------GK--- 560 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee---C------------Cc---
Confidence 358899999999999999999999999999999999999999999999997 455553 0 11
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
-.|.+--+|+|++|++.++.++.+..
T Consensus 561 ---qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 561 ---QLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred ---EEEeccCCCcEEEEeccchhhhhhhh
Confidence 34899999999999999876554443
No 48
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=91.07 E-value=0.33 Score=46.80 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=39.5
Q ss_pred cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec
Q 021797 158 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 200 (307)
Q Consensus 158 ~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK 200 (307)
.+..-.+-++.+||||++.|+...-|+|.|+++-+....|-||
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 4556678899999999999999999999999999999999996
No 49
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.95 E-value=1.3 Score=47.21 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=74.3
Q ss_pred CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEE
Q 021797 160 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 239 (307)
Q Consensus 160 ~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIy 239 (307)
.+-.+-+++..|+|..++..+.-+-+.|+|..++.=+-=.+|+|| -+.+..-.+.+ . =+|-
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd----NVr~ll~~dDG-------------t--~~ls 230 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD----NVRVLLVNDDG-------------T--RLLS 230 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc----ceEEEEEcCCC-------------C--eEee
Confidence 344578899999999999999999999999998765555569999 77665543321 1 2378
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCCe-EEeccCcc
Q 021797 240 APRKGIIEVWQMRTGPRLLTIQCAKGS-KILQPTYR 274 (307)
Q Consensus 240 aprRg~lEVW~~~~G~RV~a~~v~~~~-~Ll~~~~~ 274 (307)
+..+|.|.+|++.+-++++++.+.+.+ =-|+.+..
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence 999999999999999999999998753 33444433
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.89 E-value=3.3 Score=44.25 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=57.3
Q ss_pred ccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
+..+...+.+|+.+| ++.+++++...|.|.|+|+.++..+..+++... +.-+..... +. .
T Consensus 571 ~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--v~~v~~~~~---------------~g--~ 631 (793)
T PLN00181 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN--ICCVQFPSE---------------SG--R 631 (793)
T ss_pred ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--eEEEEEeCC---------------CC--C
Confidence 556677789999998 789999999999999999999998888876422 111111110 01 1
Q ss_pred EEEEcCCCCeEEEeecCCCC
Q 021797 236 LAIHAPRKGIIEVWQMRTGP 255 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~ 255 (307)
+++.+-..|.|.+|+++++.
T Consensus 632 ~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred EEEEEeCCCeEEEEECCCCC
Confidence 34567788999999998765
No 51
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=90.83 E-value=1.9 Score=42.59 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=63.4
Q ss_pred CCEEEEEc-CCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeec
Q 021797 173 GSLAAITD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 251 (307)
Q Consensus 173 ~~lAavtD-slGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~ 251 (307)
+.|+.+++ .-|.|.+||..+..+++..+.--+.. ....-. +|....+|+ .|.|.|-++|+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h---~~~~~s--------------~Dgr~~yv~--~rdg~vsviD~ 65 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPH---AGLKFS--------------PDGRYLYVA--NRDGTVSVIDL 65 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEE---EEEE-T--------------T-SSEEEEE--ETTSEEEEEET
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCce---eEEEec--------------CCCCEEEEE--cCCCeEEEEEC
Confidence 46777765 57999999999999999887543421 111111 112223333 57899999999
Q ss_pred CCCCeEEEEEecCCeEEecc--Ccc--cccccCCCCCcccEEEEEeCCCCc
Q 021797 252 RTGPRLLTIQCAKGSKILQP--TYR--FGSSMASSPYVPLEVFLLNGDSGQ 298 (307)
Q Consensus 252 ~~G~RV~a~~v~~~~~Ll~~--~~~--~~~~~~~~~~~~~~~~ll~~~~g~ 298 (307)
.+++.|..+.++.+.+=+.- ..+ +.++ |.+.++.+||..+.+
T Consensus 66 ~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n-----~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 66 ATGKVVATIKVGGNPRGIAVSPDGKYVYVAN-----YEPGTVSVIDAETLE 111 (369)
T ss_dssp TSSSEEEEEE-SSEEEEEEE--TTTEEEEEE-----EETTEEEEEETTT--
T ss_pred CcccEEEEEecCCCcceEEEcCCCCEEEEEe-----cCCCceeEecccccc
Confidence 99999999999876543322 111 2222 677788888876554
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.71 E-value=1.6 Score=44.95 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=68.8
Q ss_pred CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecc---------ccc-----ccc---
Q 021797 160 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK---------DAA-----TSS--- 222 (307)
Q Consensus 160 ~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~---------~~~-----~~~--- 222 (307)
-++..-+++..-||+|+|+.|.-|-|=++|..+..|+|..+++-. -.-.+...... |+- .+.
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 356677888889999999999999999999999899998887632 22222211110 000 000
Q ss_pred ----------cccCCCCCCcceEEEEEcCCCCeEEEeecCCC-CeEEEEEecC
Q 021797 223 ----------AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTG-PRLLTIQCAK 264 (307)
Q Consensus 223 ----------~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G-~RV~a~~v~~ 264 (307)
.+...- .+.+-.+|+-...+|.|.+|++|.- +++..++.+.
T Consensus 146 ~~~l~~htDYVR~g~~-~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDI-SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred EEEecCCcceeEeecc-ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 000000 0112247888999999999999986 9999999663
No 53
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=90.50 E-value=1.1 Score=44.50 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=58.3
Q ss_pred CEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeec
Q 021797 174 SLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 251 (307)
Q Consensus 174 ~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~ 251 (307)
+.+|+.=|-|-|-|+|..+|..++.+|||-++ +++|+... ....|+-+.-+|.|.+|++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-------------------s~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-------------------SPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-------------------CCCeeEEeccCCeEEEEEe
Confidence 67888888999999999999999999999875 45555311 1248899999999999999
Q ss_pred CCCCeEEEEEec
Q 021797 252 RTGPRLLTIQCA 263 (307)
Q Consensus 252 ~~G~RV~a~~v~ 263 (307)
|...+++-+.-.
T Consensus 102 Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 102 RSQAESARISWT 113 (376)
T ss_pred ecchhhhheecc
Confidence 999888877644
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=89.88 E-value=1.8 Score=45.20 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=54.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+.|++-.+..|..||++.|+|++|.-+.|+|+|+++..+---- .+|+....+.-. =+ ++- -+
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-------w~FHtakI~~~a------Ws---P~n--~~ 544 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-------WAFHTAKINCVA------WS---PNN--KL 544 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-------eeeeeeeEEEEE------eC---CCc--eE
Confidence 6677888999999999999999999999999999999983222 233332221100 00 000 24
Q ss_pred EEEcCCCCeEEEeecCC
Q 021797 237 AIHAPRKGIIEVWQMRT 253 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~ 253 (307)
|--...+-.|-||+|..
T Consensus 545 vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 545 VATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEeccccceEEEEEccC
Confidence 55566677788898864
No 55
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.74 E-value=0.52 Score=48.44 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=45.8
Q ss_pred cCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecc
Q 021797 150 RASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG 201 (307)
Q Consensus 150 ~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKG 201 (307)
...|++.|.+++--.-++.-||+|+|.|..+..|+|.++++.++.+++-.+|
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 3456677889999999999999999999999999999999999998876654
No 56
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=89.46 E-value=3 Score=37.17 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=51.0
Q ss_pred eeeEEEECCCCCEE-EEE-cCCCcEEEEEcCCceeEEee-cccccceeeEEEEEecccccccccccCCCCCCcceEEEE-
Q 021797 163 KGERLTLSPSGSLA-AIT-DSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI- 238 (307)
Q Consensus 163 ~~~~I~lsP~~~lA-avt-DslGRV~LiD~~~~~ivRmW-KGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVI- 238 (307)
.+..++=+|+|+.+ +++ +.-++|.|+|+. +..+... ++.+. .+.|=. . .. +|++
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n-~i~wsP----------------~--G~--~l~~~ 118 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRN-TISWSP----------------D--GR--FLVLA 118 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCce-EEEECC----------------C--CC--EEEEE
Confidence 38999999998654 443 455799999997 4444433 33443 233321 1 11 3444
Q ss_pred -EcCCCCeEEEeecCCCCeEEEEEec
Q 021797 239 -HAPRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 239 -yaprRg~lEVW~~~~G~RV~a~~v~ 263 (307)
+.-..|.|++|+++...+|..+..+
T Consensus 119 g~~n~~G~l~~wd~~~~~~i~~~~~~ 144 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKKKKISTFEHS 144 (194)
T ss_pred EccCCCcEEEEEECCCCEEeeccccC
Confidence 3344688999999999999888754
No 57
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.44 E-value=5.6 Score=40.01 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=79.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccccc--------cc-------
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAA--------TS------- 221 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~--------~~------- 221 (307)
+.-..-...+++.=|.|.+++..-..--|-.+|+.+|.-+..+-|+++ |+.+......+ ++
T Consensus 189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e----wvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE----WVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH----hEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 444455678888999999999888888899999999999999999999 99887654221 00
Q ss_pred --c-------ccc---C----------------CCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecC---CeEEec
Q 021797 222 --S-------AYY---A----------------PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK---GSKILQ 270 (307)
Q Consensus 222 --~-------~~~---~----------------~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~---~~~Ll~ 270 (307)
. .+. + .+..+.+.+ ..-+.|+++|++|+|++|.++.++---- .+.++.
T Consensus 265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~-l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV-LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE-EEeecccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 0 000 0 000112234 3568899999999999999888775322 144555
Q ss_pred cCccccc
Q 021797 271 PTYRFGS 277 (307)
Q Consensus 271 ~~~~~~~ 277 (307)
|+.++.-
T Consensus 344 p~Gkyi~ 350 (406)
T KOG0295|consen 344 PGGKYIL 350 (406)
T ss_pred CCCeEEE
Confidence 5555433
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=89.01 E-value=1 Score=46.29 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=51.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
...+-.||||++++..|+.|+|..+|-.+-.++.-||+|-.. .+.|+... +. -||-+.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-------------~S-------kvat~~ 494 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-------------PS-------KVATCG 494 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-------------cc-------eeEecc
Confidence 356778999999999999999999999999999999999321 23454321 11 345666
Q ss_pred CCCeEEEee
Q 021797 242 RKGIIEVWQ 250 (307)
Q Consensus 242 rRg~lEVW~ 250 (307)
=.|.|.||+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 789999995
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.77 E-value=5.1 Score=45.68 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=65.4
Q ss_pred ccCCCce--eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcce
Q 021797 157 LKDHPRK--GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 157 l~D~~R~--~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
+.-..|+ +.+|++||.++|+++.-+-|-+.|||+.-+..|+-|+===+| ||+-.+--. .. .+.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~---~i~~v~~~~-------~~-~~~---- 1253 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA---PIRHVWLCP-------TY-PQE---- 1253 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC---CcceEEeec-------cC-CCC----
Confidence 3444455 689999999999999999999999999999999999743333 443222100 00 000
Q ss_pred EEEEEcC--CCCeEEEeecCCCCeEEEEEec
Q 021797 235 CLAIHAP--RKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 235 ~LVIyap--rRg~lEVW~~~~G~RV~a~~v~ 263 (307)
.-.|.+. --+-|++|+|-+|.|=.++-++
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 1223333 3688999999999999999988
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.76 E-value=1.9 Score=41.34 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=64.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
+.+++.||+++-..++--.+-+=|+|-.+|.++..+||+-+-+..==-.... ++. -||-..-+
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q--------------sdt---hV~sgSED 248 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ--------------SDT---HVFSGSED 248 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc--------------cce---eEEeccCC
Confidence 6789999998766666666778899999999999999998744321111101 122 57888999
Q ss_pred CeEEEeecCCCCeEEEEEecCCe
Q 021797 244 GIIEVWQMRTGPRLLTIQCAKGS 266 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~~~~ 266 (307)
|.+-+|++-.+.-+..+.++..-
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred ceEEEEEeccceeeeeeccCCce
Confidence 99999999999998888866543
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=88.52 E-value=9.6 Score=40.07 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=69.7
Q ss_pred cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 156 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
++-|+.|=..++--+|||.++|.+-+.|.|+|+|=.+|..+-...+ -+|.=+=|-...= .+|...|
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsW-------------sPDs~~~ 250 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSW-------------SPDSTQF 250 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEE-------------CCCCceE
Confidence 4778888899999999999999999999999999999999988764 3333222211110 1122224
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
|- +.-+-.++||++-++..+-++..+..
T Consensus 251 ~T--~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 251 LT--VSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EE--ecCCceEEEEEeeccceEEEeecCCc
Confidence 44 34467899999999999999998875
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.26 E-value=1.2 Score=45.11 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=39.5
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 205 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA 205 (307)
-.+++.||++.|+|+.-..|+|.+|++.++.+..+-|+-+..
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 667899999999999999999999999999999999998886
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=86.57 E-value=1.7 Score=43.35 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=63.9
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
.....++..|-++.-+..+...--|-+--+..|..++-++|+-. ++.-.--+ .+. .-+|.|
T Consensus 306 tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS----yvn~a~ft-------------~dG--~~iisa 366 (508)
T KOG0275|consen 306 TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS----YVNEATFT-------------DDG--HHIISA 366 (508)
T ss_pred ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc----cccceEEc-------------CCC--CeEEEe
Confidence 44567788888887666666666666778899999999999987 66421111 112 256999
Q ss_pred CCCCeEEEeecCCCCeEEEEEecC
Q 021797 241 PRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 241 prRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
..+|.|+||+++++.++.+|+.+.
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCC
Confidence 999999999999999999999654
No 64
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=86.19 E-value=6.3 Score=38.78 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCc------eeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~------~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
-+-..+.+|+|+++|+.-..--..++++.+. .+.|+.+||+. ++..-.-.+.+ .
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg----ylScC~f~dD~----------------~ 158 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG----YLSCCRFLDDN----------------H 158 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc----eeEEEEEcCCC----------------c
Confidence 4667899999999999755555677787766 78899999998 66554322211 2
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 237 AIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
+|-+.-+...-+|++.+|+++-.|+
T Consensus 159 ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred eEecCCCceEEEEEcccceEEEEec
Confidence 3556667788899999999999888
No 65
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.13 E-value=20 Score=33.51 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=22.9
Q ss_pred eEEEECCCCCEEEEE-cCCCcEEEEEcCC
Q 021797 165 ERLTLSPSGSLAAIT-DSLGRILLLDTQA 192 (307)
Q Consensus 165 ~~I~lsP~~~lAavt-DslGRV~LiD~~~ 192 (307)
..|+++|+|+++.++ ...|+|.++|+.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 579999999876665 5689999999973
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.09 E-value=13 Score=34.70 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=23.2
Q ss_pred EEEECCCCCEEEEEcC-CCcEEEEEcCC
Q 021797 166 RLTLSPSGSLAAITDS-LGRILLLDTQA 192 (307)
Q Consensus 166 ~I~lsP~~~lAavtDs-lGRV~LiD~~~ 192 (307)
++.++|+|+++.+++. .+.|.++|+..
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 5899999998888765 89999999973
No 67
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=85.83 E-value=3.8 Score=44.81 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=69.6
Q ss_pred cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecc---------ccccee----------eEEEEEecc-c
Q 021797 158 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG---------YRDASC----------VFMEMLVNK-D 217 (307)
Q Consensus 158 ~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKG---------yRDAqc----------~Wi~~~~~~-~ 217 (307)
+++++....|+++-.+++.+.++.-|-+..+|..+...+.-|+= +|++.+ -.+.+.... -
T Consensus 490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 58889999999999999999999999888888877775555531 111111 111100000 0
Q ss_pred c----cccccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEec
Q 021797 218 A----ATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQ 270 (307)
Q Consensus 218 ~----~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~ 270 (307)
+ .+++...-.-.+|.. -+|-|-.++.|.+||+.+|..|..+.++.-|+-+.
T Consensus 570 R~f~gh~nritd~~FS~Dgr--WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls 624 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGR--WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLS 624 (910)
T ss_pred HHhhccccceeeeEeCCCCc--EEEEeecCCcEEEEeccCcceeeeEecCCcceeeE
Confidence 0 000000000011221 45778889999999999999999999988776653
No 68
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.36 E-value=4.6 Score=40.62 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=79.5
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccccc---cc----------
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAA---TS---------- 221 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~---~~---------- 221 (307)
+++.-.+-.+.++..-|+--+.+++-..+-|-++|..+|.+.|-.|||-|+ ..=|.+...+..- ++
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecCCccchhheeHH
Confidence 446666777888999999999999988999999999999999999999999 4444443322100 00
Q ss_pred --------ccccCCCCCC----cceEEEEEcCCCCeEEEeecCCCCeEEEEE----------ecCCeEEecc
Q 021797 222 --------SAYYAPVKSD----YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ----------CAKGSKILQP 271 (307)
Q Consensus 222 --------~~~~~~~k~~----~~l~LVIyaprRg~lEVW~~~~G~RV~a~~----------v~~~~~Ll~~ 271 (307)
-.+.+..-+. +.---+..+.|+..|..|++.+|-.|.+|. |...++|+-+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 0000000000 000135678899999999999999998876 4455666543
No 69
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.13 E-value=3 Score=41.34 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCC
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 244 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg 244 (307)
..+..+|+|++++.+.. .+|+++|+.++....+.+++.+-.+.|- ++.. +++|+-.+|
T Consensus 336 ~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~~~~~~~~~s-------------------PdG~--~i~~~s~~g 393 (429)
T PRK01742 336 YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSSTFLDESPSIS-------------------PNGI--MIIYSSTQG 393 (429)
T ss_pred CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCCCCCCCceEC-------------------CCCC--EEEEEEcCC
Confidence 35678999998888755 5688899999988777777655433431 1111 456665677
Q ss_pred eEEEeec--CCCCeEEEEE
Q 021797 245 IIEVWQM--RTGPRLLTIQ 261 (307)
Q Consensus 245 ~lEVW~~--~~G~RV~a~~ 261 (307)
...+|.+ .+|..+..++
T Consensus 394 ~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 394 LGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CceEEEEEECCCCceEEcc
Confidence 6666554 3576666665
No 70
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=85.05 E-value=6.3 Score=43.49 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=78.2
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
+..++++=+|+++|..-+.=-|-|+++..+-..+..+|+- |++-=+....+ .-||+.-+- .
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~-----------------~~fLAvss~-d 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPK-----------------GNFLAVSSC-D 159 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCC-----------------CCEEEEEec-C
Confidence 5678999999888886555569999999999999999984 44433332211 226766555 9
Q ss_pred CeEEEeecCCCCeEEEEEecCCeEEeccCcccccccC-CC-CCccc-EEEEEeCCCCceEEEecc
Q 021797 244 GIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMA-SS-PYVPL-EVFLLNGDSGQLSVLNRS 305 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~-~~-~~~~~-~~~ll~~~~g~l~~in~~ 305 (307)
|.|.||++++|....+++ .+.+.-.+..++. .+ .|||. .=+++-|.++.++.+++.
T Consensus 160 G~v~iw~~~~~~~~~tl~------~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLT------GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ceEEEEEcccchhhhhcc------cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999776555544 2333333332211 22 28884 666777788888888764
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=83.58 E-value=4.9 Score=40.92 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=52.8
Q ss_pred CceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCce-eEEeecccccce--eeEEEEEecccccccccccCCCCCCcceEE
Q 021797 161 PRKGERLTLSP-SGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 161 ~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~-ivRmWKGyRDAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
.....++...| ++.++|+..+.|+|.|+|+.++. .+....|++|+- +.|-. +.-..|
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP-------------------h~etvL 332 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP-------------------HNETVL 332 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC-------------------CCCcee
Confidence 56678899999 67888889999999999999986 567888999852 23321 011146
Q ss_pred EEEcCCCCeEEEeecC
Q 021797 237 AIHAPRKGIIEVWQMR 252 (307)
Q Consensus 237 VIyaprRg~lEVW~~~ 252 (307)
+.-. -+|.|-||++-
T Consensus 333 ASSg-~D~rl~vWDls 347 (422)
T KOG0264|consen 333 ASSG-TDRRLNVWDLS 347 (422)
T ss_pred Eecc-cCCcEEEEecc
Confidence 6555 68888888875
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=83.30 E-value=3.5 Score=41.53 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=73.5
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEE-----EEEeccccc-------c-cc-------
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM-----EMLVNKDAA-------T-SS------- 222 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi-----~~~~~~~~~-------~-~~------- 222 (307)
.|..+|+.-+.++.....+..-|.++|+++|.++...=|+-||-.+-. .+.+..|.. + +.
T Consensus 237 tGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVL 316 (499)
T KOG0281|consen 237 TGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVL 316 (499)
T ss_pred CCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHH
Confidence 477899999999988888999999999999999999999998866533 222222221 0 00
Q ss_pred --cccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 021797 223 --AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 223 --~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
+.......++---+++-|.-+..|+||++.++..|-+++.-+-
T Consensus 317 vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 317 VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred hhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 0111111112112778999999999999999999999987654
No 73
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=83.30 E-value=7.4 Score=38.31 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=57.2
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEE--eecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR--LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivR--mWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
+..++-+++.+.-++++|+-|++..++-..+.+-. -||++ |++ +|+-.....+ + =||.+.
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E-~Wta~f~~~~--------------p--nlvytG 184 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFE-AWTAKFSDKE--------------P--NLVYTG 184 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-cee-eeeeecccCC--------------C--ceEEec
Confidence 56778888999999999999999999988888877 89987 333 3765443322 1 388899
Q ss_pred CCCCeEEEeecC
Q 021797 241 PRKGIIEVWQMR 252 (307)
Q Consensus 241 prRg~lEVW~~~ 252 (307)
.-+|.|-.|++|
T Consensus 185 gDD~~l~~~D~R 196 (339)
T KOG0280|consen 185 GDDGSLSCWDIR 196 (339)
T ss_pred CCCceEEEEEec
Confidence 999999999999
No 74
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.88 E-value=16 Score=36.13 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=27.7
Q ss_pred eeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEeecc
Q 021797 163 KGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 201 (307)
Q Consensus 163 ~~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRmWKG 201 (307)
.......||+|+.+|. ++..| +|+++|+.++.+.++-++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 282 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS 282 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC
Confidence 3446788999976665 44444 689999988887777553
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=82.85 E-value=7.8 Score=39.89 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=57.9
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
...+.+-|+|.|...+++.|-...-|..+|..+-+---- -.+|.--.. .-.+| .|.|.-|.| +
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~--------------~fHpD-gLifgtgt~-d 368 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSA--------------AFHPD-GLIFGTGTP-D 368 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEe--------------eEcCC-ceEEeccCC-C
Confidence 456889999999999999999999999998776543110 011111110 01122 567888888 9
Q ss_pred CeEEEeecCCCCeEEEEEe
Q 021797 244 GIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v 262 (307)
|.|+||++..+.-++.|-.
T Consensus 369 ~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred ceEEEEEcCCccccccCCC
Confidence 9999999999887777654
No 76
>PRK04792 tolB translocation protein TolB; Provisional
Probab=82.73 E-value=15 Score=36.88 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=32.4
Q ss_pred eeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEeeccc-ccceeeE
Q 021797 163 KGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKGY-RDASCVF 209 (307)
Q Consensus 163 ~~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRmWKGy-RDAqc~W 209 (307)
.......||+|+.+|. .+..| +|+++|+.++.+.++-.+. -+....|
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~w 313 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSW 313 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEE
Confidence 3346789999986655 45556 4999999999988876542 2334444
No 77
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=82.69 E-value=32 Score=34.82 Aligned_cols=87 Identities=21% Similarity=0.280 Sum_probs=68.2
Q ss_pred CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc--eeeEEEEEecccccccccccCCCCCC
Q 021797 154 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSD 231 (307)
Q Consensus 154 l~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA--qc~Wi~~~~~~~~~~~~~~~~~~k~~ 231 (307)
+..|.-++-....+.++|+.+|+|+--..-+=.|+|+.+|..+-..-||.|- +|.|- .+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs-------------------hd 117 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS-------------------HD 117 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc-------------------cC
Confidence 3457888889999999999999999877777899999999999999999982 22221 11
Q ss_pred cceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 232 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 232 ~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
. -|+--.--.|.|.||.+.+|.-...+-
T Consensus 118 g--tlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 118 G--TLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred c--eEEEecCCCccEEEEEcccCceEEEee
Confidence 1 255667788999999999988776664
No 78
>PRK01742 tolB translocation protein TolB; Provisional
Probab=82.53 E-value=15 Score=36.33 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=28.7
Q ss_pred eeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEeecc
Q 021797 163 KGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 201 (307)
Q Consensus 163 ~~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRmWKG 201 (307)
+...+..+|+|++++. .+.-| +|.++|+.++.+.++-.+
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 290 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG 290 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence 4456889999986665 45555 678889998888777654
No 79
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=82.25 E-value=20 Score=31.26 Aligned_cols=84 Identities=29% Similarity=0.343 Sum_probs=59.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDs-lGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
+....-.+..++.+|++++.+.... .|.|.++|+..+..++..+|+.+ .+....-.. +.. +
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-------------~~~-~ 212 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD----PVSSLAFSP-------------DGG-L 212 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC----ceEEEEEcC-------------Ccc-e
Confidence 5555556669999999987777775 99999999999999999999554 222221110 001 3
Q ss_pred EEEEcCCCCeEEEeecCCCCeEE
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLL 258 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~ 258 (307)
+++-....|.|.+|+++.+..+.
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEe
Confidence 44446788888899888777777
No 80
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.00 E-value=2.3 Score=45.93 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=55.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+.-+.|....|.++|+|+|.+..-..--|=++|+..|.++.-+|++-. +..-++. +..=||
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~------------------hp~e~L 210 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEF------------------HPLEVL 210 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-ccccccc------------------Cchhhh
Confidence 444677788999999999999965566778888888888888876532 2222221 111144
Q ss_pred EEEcCCCCeEEEeecCCCCeE
Q 021797 237 AIHAPRKGIIEVWQMRTGPRL 257 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV 257 (307)
.=-...++++.+|++.+..-|
T Consensus 211 la~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred hccCCCCceeeeeccceeEEe
Confidence 455567899999999864433
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=81.77 E-value=2 Score=46.54 Aligned_cols=142 Identities=24% Similarity=0.237 Sum_probs=83.6
Q ss_pred cceeEEEecCCceeEEEeecCCCCcch-hhHHHhhhhhHHHHHHHhhhhhhccCCCCCCCCCC--CCCCcccCCCCcccc
Q 021797 82 RYFCAVTIGEDSVISAFRLSEDRSRSL-VGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEP--KPQSFARASPLTCLK 158 (307)
Q Consensus 82 ~~~~~i~vG~~P~la~y~~~~~~~~s~-~~a~~s~va~Av~s~~~s~ak~~W~~~~~~~~~e~--~p~~~~~a~pl~~l~ 158 (307)
...|.+||-+|-.|-++.++.+..-.. --.++| + .++|+..-... ++.-. ...-+++ .+..++
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils----~------~l~ki~y~d~~--~q~~~d~~~~~fdk--a~~s~~ 456 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS----A------NLSKIPYEDST--QQIMHDASAGIFDK--ALVSTC 456 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccch----h------hhhcCccccCc--hhhhhhccCCcccc--cchhhc
Confidence 445788888888888887776444321 112333 1 23333331111 00000 0111222 224589
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEE
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 238 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVI 238 (307)
|++-.+.+|++||+|+..|..|..|-+=++|++.....- +||+.|.+-- -..+ .+++..+-|.-
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-----------~~eAHesEil---cLey--S~p~~~~kLLA 520 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-----------FMEAHESEIL---CLEY--SFPVLTNKLLA 520 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-----------heecccceeE---EEee--cCchhhhHhhh
Confidence 999999999999999999999999999999999886543 4554443210 0000 11222334667
Q ss_pred EcCCCCeEEEeecCC
Q 021797 239 HAPRKGIIEVWQMRT 253 (307)
Q Consensus 239 yaprRg~lEVW~~~~ 253 (307)
.|.|+.+|-|+|+..
T Consensus 521 SasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKR 535 (1080)
T ss_pred hccCCceEEEEeccc
Confidence 788888888888753
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=81.60 E-value=3.1 Score=40.79 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccc
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 203 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyR 203 (307)
.+-+-+|+++++.+++..|||.++++.+|..+..|+|-+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 677889999999999999999999999999999999973
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.56 E-value=5.1 Score=43.64 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=68.4
Q ss_pred CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 232 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 232 (307)
++-.|+-+++.+..+-.+-.|...|..--.|-|+|+|+..-..+-=.+|+-|+=....-... +
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~----------------~- 161 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG----------------D- 161 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC----------------C-
Confidence 34447888999999999999999999989999999999999999999999996443332211 1
Q ss_pred ceEEEEEcCCCCeEEEeecCCCCeEEEE
Q 021797 233 CLCLAIHAPRKGIIEVWQMRTGPRLLTI 260 (307)
Q Consensus 233 ~l~LVIyaprRg~lEVW~~~~G~RV~a~ 260 (307)
-++|-..+++.|.+|++.+-.+..+.
T Consensus 162 --~~lvS~sKDs~iK~WdL~tqhCf~Th 187 (888)
T KOG0306|consen 162 --SFLVSVSKDSMIKFWDLETQHCFETH 187 (888)
T ss_pred --eEEEEeccCceEEEEecccceeeeEE
Confidence 16677778888888888776665544
No 84
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.37 E-value=3.9 Score=41.22 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=66.3
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee-cccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW-KGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
..+++|||.+.+.++|.++.|=+.....-.+|.-| =|+++ |+...+-.++ ++.+.+.-+
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e----FVS~isl~~~----------------~~LlS~sGD 214 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE----FVSTISLTDN----------------YLLLSGSGD 214 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh----heeeeeeccC----------------ceeeecCCC
Confidence 34999999999999999999999888888888755 46887 7766554321 467899999
Q ss_pred CeEEEeecCCCCeEEEEEecC
Q 021797 244 GIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~~ 264 (307)
+.|.+|+.++|..+.++.+..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred CcEEEEecccCCcccccchhH
Confidence 999999999999999998664
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.31 E-value=16 Score=39.52 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=71.8
Q ss_pred CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcc
Q 021797 154 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 233 (307)
Q Consensus 154 l~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 233 (307)
+..|.-+.--...+++=|++.++ .++|.|-|.++|+ +|.+|+..-|++. ++-...... ++
T Consensus 172 l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~-~ge~l~~~~ghtn----~vYsis~~~------------~~-- 231 (745)
T KOG0301|consen 172 LKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL-DGEVLLEMHGHTN----FVYSISMAL------------SD-- 231 (745)
T ss_pred hhhhccchhheeeeEEecCCCeE-eecCCceEEEEec-cCceeeeeeccce----EEEEEEecC------------CC--
Confidence 34455566677788888887654 5689999999999 6666666679998 664332111 11
Q ss_pred eEEEEEcCCCCeEEEeecCCCCeEEEEEecC----CeEEeccCcccccc
Q 021797 234 LCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK----GSKILQPTYRFGSS 278 (307)
Q Consensus 234 l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~----~~~Ll~~~~~~~~~ 278 (307)
-+++-..-++.|+||... ..+..++.+. .++.+.++--..|+
T Consensus 232 -~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 232 -GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred -CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEec
Confidence 278999999999999985 8888888776 34555555555444
No 86
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=80.19 E-value=3.7 Score=23.22 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=26.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLD 189 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD 189 (307)
+......+.+++..|+++++++....|.|.++|
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 444556788999999989999888888887765
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.55 E-value=34 Score=33.89 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=26.9
Q ss_pred eEEEECCCCCEEE-EEcCCCc--EEEEEcCCceeEEee
Q 021797 165 ERLTLSPSGSLAA-ITDSLGR--ILLLDTQALVVVRLW 199 (307)
Q Consensus 165 ~~I~lsP~~~lAa-vtDslGR--V~LiD~~~~~ivRmW 199 (307)
...+.+|+|++++ ++|..|+ |+++|+.++..-|+-
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 4678899997655 4677775 899999988877763
No 88
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.20 E-value=33 Score=34.28 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=65.0
Q ss_pred eeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceeEEe-----ecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 163 KGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRL-----WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDs-lGRV~LiD~~~~~ivRm-----WKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+....-++|+|+++.++|. .-||.++|+..|..-.. =+|+=--.+.|.. ..| |.
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp---------------n~k-----~a 205 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP---------------NGK-----YA 205 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC---------------CCc-----EE
Confidence 4667889999999999884 67999999997765331 1111111111110 000 11
Q ss_pred EEEcCCCCeEEEeecCC--------------------CCeEEEEEecCCeEEeccCcccccccCCCCCcccEEEEEeCCC
Q 021797 237 AIHAPRKGIIEVWQMRT--------------------GPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDS 296 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~--------------------G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~~~~~~~~ll~~~~ 296 (307)
-+=--..+.|+||.... -+..+++++.+.+|.||.+-+..- ..-+|=+||++
T Consensus 206 Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--------sI~~f~V~~~~ 277 (346)
T COG2706 206 YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--------SIAVFSVDPDG 277 (346)
T ss_pred EEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--------eEEEEEEcCCC
Confidence 11223346677776654 256788888888888887554322 34455566666
Q ss_pred CceEEE
Q 021797 297 GQLSVL 302 (307)
Q Consensus 297 g~l~~i 302 (307)
|.|..+
T Consensus 278 g~L~~~ 283 (346)
T COG2706 278 GKLELV 283 (346)
T ss_pred CEEEEE
Confidence 655543
No 89
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.17 E-value=32 Score=33.41 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred ceeeEEEECCCCCEEEEE-cCCCc----EEEEEcCCceeEE-eecccccceeeEE
Q 021797 162 RKGERLTLSPSGSLAAIT-DSLGR----ILLLDTQALVVVR-LWKGYRDASCVFM 210 (307)
Q Consensus 162 R~~~~I~lsP~~~lAavt-DslGR----V~LiD~~~~~ivR-mWKGyRDAqc~Wi 210 (307)
-.+....+||+|+++|.+ |..|. |.++|+.+|..+. ...+.+-..+.|.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~ 178 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWS 178 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEEC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEe
Confidence 455678999999988885 77776 9999999998876 4444444346665
No 90
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=78.88 E-value=6.4 Score=42.95 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=44.1
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
++...++|+++++|+.|+.|||+++--..-. =+-+----+.|.-.......- ..+.+ .+.-+.+-
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----~~~~t~t~lHWH~~~V~~L~f---------S~~G~--~LlSGG~E 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSS----DDSETCTLLHWHHDEVNSLSF---------SSDGA--YLLSGGRE 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccc----cccccceEEEecccccceeEE---------ecCCc--eEeecccc
Confidence 4568999999999999999998775332200 000000112366211111100 01222 33567778
Q ss_pred CeEEEeecCCCCe
Q 021797 244 GIIEVWQMRTGPR 256 (307)
Q Consensus 244 g~lEVW~~~~G~R 256 (307)
|.|-+|++.++.|
T Consensus 273 ~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 273 GVLVLWQLETGKK 285 (792)
T ss_pred eEEEEEeecCCCc
Confidence 9999999988643
No 91
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=78.71 E-value=15 Score=37.14 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=62.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCC
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 243 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprR 243 (307)
...+.+-|+-..+++.-..--+=++|+.+..-|.+.+|+|..-+.=+ +.. .++ -||-...+
T Consensus 238 V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~-~~~---------------~dp---qvit~S~D 298 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM-CQP---------------TDP---QVITGSHD 298 (460)
T ss_pred eEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE-eec---------------CCC---ceEEecCC
Confidence 45778889888888765555666799999999999999999544322 111 112 45888999
Q ss_pred CeEEEeecCCCCeEEEEEecC
Q 021797 244 GIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~~ 264 (307)
+.|.+||++.|+-..+.+-.|
T Consensus 299 ~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred ceEEEeeeccCceeEeeeccc
Confidence 999999999999988887654
No 92
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=78.32 E-value=6.1 Score=39.44 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeecC
Q 021797 173 GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 252 (307)
Q Consensus 173 ~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~ 252 (307)
+-+.|++-.+|-|-+||+.++.+..-..|+=+| | + ..+.-|.++ -||+-+.++..|.+|++|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s----I----N------eik~~p~~~----qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS----I----N------EIKFHPDRP----QLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCcc----c----h------hhhcCCCCC----cEEEEecCCceEEEEecc
Confidence 457788889999999999999988776665441 1 1 111122222 489999999999999999
Q ss_pred CCCeEEEEEe
Q 021797 253 TGPRLLTIQC 262 (307)
Q Consensus 253 ~G~RV~a~~v 262 (307)
+.-+|+.|--
T Consensus 167 ~~~Cv~VfGG 176 (385)
T KOG1034|consen 167 TDVCVAVFGG 176 (385)
T ss_pred CCeEEEEecc
Confidence 9999998863
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.22 E-value=18 Score=36.00 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=77.0
Q ss_pred CCccccCCCceeeEEEECCCC---CEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCC
Q 021797 153 PLTCLKDHPRKGERLTLSPSG---SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 229 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~---~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k 229 (307)
++..|.++.-.+..+...|+- .|.+++| .|-|+++|+..=..+.-.|++-.+ +-.|.+...+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sd-DG~i~iw~~~~W~~~~slK~H~~~-Vt~lsiHPS~------------- 139 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSD-DGHIIIWRVGSWELLKSLKAHKGQ-VTDLSIHPSG------------- 139 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecC-CCcEEEEEcCCeEEeeeecccccc-cceeEecCCC-------------
Confidence 344466777788888888876 4555554 699999999999999999999876 7777664331
Q ss_pred CCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEe
Q 021797 230 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 269 (307)
Q Consensus 230 ~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll 269 (307)
-|++-..+++.|..|++=+|++-+..+...-..|+
T Consensus 140 -----KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v 174 (362)
T KOG0294|consen 140 -----KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLV 174 (362)
T ss_pred -----ceEEEEcCCceeeeehhhcCccceeeccCCcceee
Confidence 27888889999999999999999999988776665
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=77.89 E-value=10 Score=36.94 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=61.0
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc----eeeEEEEEecccccccccccCCCCCCcce
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA----SCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA----qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
-..-+..+|+-.-+|+..|..-..+-|.++++..+..+.-|-+++.- |..|-+.. .-|
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~------------------~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH------------------PDL 79 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC------------------Ccc
Confidence 34556788999999999999888888888888888665555444432 55554321 123
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
|.+ |.-.-.|.+|+.|.|.+++.+.-..+
T Consensus 80 ~at--as~dk~ir~wd~r~~k~~~~i~~~~e 108 (313)
T KOG1407|consen 80 FAT--ASGDKTIRIWDIRSGKCTARIETKGE 108 (313)
T ss_pred eEE--ecCCceEEEEEeccCcEEEEeeccCc
Confidence 444 44466899999999999999885444
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=77.89 E-value=4.3 Score=41.75 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=51.1
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecc-cccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKG-yRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
....|+.+|+|.|++..---|-++||.+.+|.++.+|-+ |++--| ..-.+. . -.+|-+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc-----L~fs~d-------------g--s~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC-----LKFSDD-------------G--SHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE-----EEEeCC-------------C--cEEEecC
Confidence 456778899999999988899999999999999999954 455333 211111 1 1457888
Q ss_pred CCCeEEEeec
Q 021797 242 RKGIIEVWQM 251 (307)
Q Consensus 242 rRg~lEVW~~ 251 (307)
++|.|-||.+
T Consensus 143 kDg~V~vW~l 152 (476)
T KOG0646|consen 143 KDGAVLVWLL 152 (476)
T ss_pred CCccEEEEEE
Confidence 8888888876
No 96
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=77.82 E-value=35 Score=32.71 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=31.7
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceeEEe
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRL 198 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDsl---GRV~LiD~~~~~ivRm 198 (307)
|.+..+...+...||+|+++|.+..- ..|.++|+.++...++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 55666667788899999888875432 4799999999866554
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.44 E-value=19 Score=37.42 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+.-++.+..-+..+|++++.|...+..+|.++|...-..+.-..+++-|==+-...+=. .. .|
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q----------------~~-lL 359 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ----------------SG-LL 359 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc----------------cC-ce
Confidence 56678888999999999999999999999999996655555555666653322221100 00 12
Q ss_pred EEEc-CCCCeEEEeecCCCCeEEEEEecCC-eEEecc
Q 021797 237 AIHA-PRKGIIEVWQMRTGPRLLTIQCAKG-SKILQP 271 (307)
Q Consensus 237 VIya-prRg~lEVW~~~~G~RV~a~~v~~~-~~Ll~~ 271 (307)
++=. -.++.|.+|++.+|.++-.+..+-. |-|+..
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Ws 396 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWS 396 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEc
Confidence 2211 2367888999999999888877655 555544
No 98
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.18 E-value=22 Score=35.11 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-eEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~-ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
++-.+-++..+.-+|+|.++|..-..--|+|+++-.-+ =.-.-||+-.|=+.=--.. | + -
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~---d-----------~-----s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR---D-----------G-----S 103 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc---C-----------C-----C
Confidence 77788999999999999999998888888888753322 1223456666543322211 1 1 1
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
-+.-+.-+-.|-+||+++|+|+.-++.-.
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhcccc
Confidence 34567778899999999999998777443
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.36 E-value=11 Score=38.68 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=69.1
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+....-.+.++++|-+|+||.+.=..--|-|+|++...+||-++|++--.+-=-.++... .+ -|
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~-------------~~---~f 454 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG-------------ND---KF 454 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC-------------Cc---ce
Confidence 445556689999999999999987777899999999999999999987443222222111 11 26
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 237 AIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
|-...-++-|-||+-.+|.-++...
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeec
Confidence 7778889999999999999998775
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=75.49 E-value=43 Score=32.73 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred eeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEeecc
Q 021797 164 GERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 201 (307)
Q Consensus 164 ~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRmWKG 201 (307)
......||+|+.++. .+..| +|.++|+.++.+.++.++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC
Confidence 345788999976664 44445 799999999998887653
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.81 E-value=23 Score=35.28 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEECC-C-CCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCC
Q 021797 167 LTLSP-S-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 244 (307)
Q Consensus 167 I~lsP-~-~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg 244 (307)
+|+-| + +.|++.-|+ +-|.++|...+.++..++++-.-==+......+ .. .+.+-|..+|
T Consensus 212 l~~~~l~~~~L~vG~d~-~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~---------------~~--~~lvTaSSDG 273 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDN-EWISLKDTDSDTPLTEFLAHENRVKDIASYTNP---------------EH--EYLVTASSDG 273 (362)
T ss_pred eeeeecCCceEEEecCC-ceEEEeccCCCccceeeecchhheeeeEEEecC---------------Cc--eEEEEeccCc
Confidence 44444 3 455555666 999999999999998888875421112212111 11 5778999999
Q ss_pred eEEEeecCCC-----CeEEEEEecCCeEEec
Q 021797 245 IIEVWQMRTG-----PRLLTIQCAKGSKILQ 270 (307)
Q Consensus 245 ~lEVW~~~~G-----~RV~a~~v~~~~~Ll~ 270 (307)
.|.||++..- .-|+-.++ +.||-+
T Consensus 274 ~I~vWd~~~~~k~~~~~l~e~n~--~~RltC 302 (362)
T KOG0294|consen 274 FIKVWDIDMETKKRPTLLAELNT--NVRLTC 302 (362)
T ss_pred eEEEEEccccccCCcceeEEeec--CCccce
Confidence 9999999987 45666665 555543
No 102
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.75 E-value=8.8 Score=41.68 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=34.5
Q ss_pred eeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceeEEeeccccc
Q 021797 163 KGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRD 204 (307)
Q Consensus 163 ~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~~ivRmWKGyRD 204 (307)
-+..|+-.||| +|+.++|+ |++++|+..|..+.-.||+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~--rlliyD~ndG~llqtLKgHKD 54 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS--RLLVYDTSDGTLLQPLKGHKD 54 (1081)
T ss_pred chheeEECCCCceEEEecCC--EEEEEeCCCcccccccccccc
Confidence 34569999999 56666665 999999999999999999999
No 103
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=74.54 E-value=50 Score=33.17 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=36.3
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 197 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivR 197 (307)
|.-+-|-+.+||=||+|++..++...=-|.|+|+..|-+++
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 44557888999999999999998888899999999999876
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.44 E-value=29 Score=36.51 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=52.7
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
.++++.++|+|++++++..-+-++++|+.+|.+--+=|.--+-=..|..-+ + ++ ++ -||--
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-n--------------sr---~i-AYafP 463 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-N--------------SR---WI-AYAFP 463 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-C--------------ce---eE-EEecC
Confidence 478999999999999999999999999999987444333222111111100 0 11 33 45544
Q ss_pred CCe----EEEeecCCCCeEEEEEec
Q 021797 243 KGI----IEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 243 Rg~----lEVW~~~~G~RV~a~~v~ 263 (307)
.|. |.+++|. |.+++.++.+
T Consensus 464 ~gy~tq~Iklydm~-~~Kiy~vTT~ 487 (668)
T COG4946 464 EGYYTQSIKLYDMD-GGKIYDVTTP 487 (668)
T ss_pred cceeeeeEEEEecC-CCeEEEecCC
Confidence 654 6799996 6677777743
No 105
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.31 E-value=70 Score=31.30 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=30.6
Q ss_pred ccCCCceeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEe
Q 021797 157 LKDHPRKGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRL 198 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRm 198 (307)
+........+...||+|+.+|. ++..| +|.++|+.++..-++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l 238 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI 238 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc
Confidence 4455566788899999976555 55444 599999999876654
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=73.93 E-value=3.6 Score=45.31 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=41.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY 202 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGy 202 (307)
|.-++-....|..+|++.+.|+++-.|-|.+||+..+.+..+|+|-
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 4444566788999999999999999999999999999999999985
No 107
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=73.87 E-value=2.7 Score=42.32 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=53.7
Q ss_pred cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 156 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
.|.-++|.+. |+--+|++++...+.--|=|+|+..|..+||..|+-| -+.+.--.+ |
T Consensus 355 tl~gHkRGIA--ClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe----LvRciRFd~-----------k------ 411 (499)
T KOG0281|consen 355 TLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVRCIRFDN-----------K------ 411 (499)
T ss_pred hhhcccccce--ehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH----hhhheeecC-----------c------
Confidence 3666666654 3445789988887888888999999999999999877 332211111 1
Q ss_pred EEEEcCCCCeEEEeecCCC
Q 021797 236 LAIHAPRKGIIEVWQMRTG 254 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G 254 (307)
-++....+|.|+||+++.+
T Consensus 412 rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eeeeccccceEEEEecccc
Confidence 2355566999999999985
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=73.72 E-value=17 Score=39.98 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=38.4
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW 199 (307)
|.-..-++...+.||+|+|.++++..+.|=+||+.++..|-+.
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 4445567889999999999999999999999999999999876
No 109
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.64 E-value=55 Score=32.35 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=28.7
Q ss_pred eeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceeEEeecc
Q 021797 164 GERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 201 (307)
Q Consensus 164 ~~~I~lsP~~~lAav-tDslG--RV~LiD~~~~~ivRmWKG 201 (307)
....+.+|+|+.++. +|..| +|.++|+..+.+-++-.+
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~ 332 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG 332 (435)
T ss_pred cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC
Confidence 445788999976555 66665 799999999888887643
No 110
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=72.71 E-value=13 Score=38.04 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
|.-+-+++.++.-||||...|+.-+.+-+=++|+....-+...-++++ .| ++.+++|. .-++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n------lV--------S~Vk~~p~----~g~f 402 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN------LV--------SQVKYSPQ----EGYF 402 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc------hh--------hheEeccc----CCeE
Confidence 555677889999999999999988888888899998888888877777 11 22333331 1145
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEE
Q 021797 237 AIHAPRKGIIEVWQMRTGPRLLTI 260 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV~a~ 260 (307)
..-+..++.+.||+.+++..+-+.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred EEEcccCcceeeecCCCcccchhh
Confidence 678899999999999998766544
No 111
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=72.30 E-value=48 Score=33.55 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCccccCC---CceeeEEEECCCCCEEEEE--cCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCC
Q 021797 153 PLTCLKDH---PRKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP 227 (307)
Q Consensus 153 pl~~l~D~---~R~~~~I~lsP~~~lAavt--DslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~ 227 (307)
+|+.+.+- ++....+++++.+.|.|.- -+.|-|+|+|+.+..-+-+...|++ =+.+..-.
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs----------- 182 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFS----------- 182 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEEC-----------
Confidence 34444444 3333444444456788873 4589999999999999998877766 23332211
Q ss_pred CCCCcceEEEEEcCCCC-eEEEeecCCCCeEEEEEecCCeE
Q 021797 228 VKSDYCLCLAIHAPRKG-IIEVWQMRTGPRLLTIQCAKGSK 267 (307)
Q Consensus 228 ~k~~~~l~LVIyaprRg-~lEVW~~~~G~RV~a~~v~~~~~ 267 (307)
++.. |.-=|.-+| +|.|+++.+|+|++-|+=|--+.
T Consensus 183 --~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 183 --PDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred --CCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 1111 334455555 56899999999999999654433
No 112
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=70.36 E-value=11 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.0
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCce
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALV 194 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ 194 (307)
+..++-||+..|.|+...-|.|+|..+ +++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 779999999999999999999999998 444
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=69.85 E-value=12 Score=40.28 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCCccccCCCceeeEEEE-CCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCC
Q 021797 152 SPLTCLKDHPRKGERLTL-SPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 152 ~pl~~l~D~~R~~~~I~l-sP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
-.+.+|-+++-=+.+|+. .++.-++|..--.++|.|+|+.+|.. +.- |.+-.+.+. +...++..+
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~-~l~-----~s~n~~t~~--------sl~sG~k~s 173 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA-TLV-----ASFNNVTVN--------SLGSGPKDS 173 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch-hhh-----hhccccccc--------cCCCCCccc
Confidence 345668888888999999 88999999999999999999999965 000 011111111 001111111
Q ss_pred ------CcceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 231 ------DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 231 ------~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
-...++++-..--+.|.+|+.+++.|+.-+.
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr 210 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR 210 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeee
Confidence 0123678888889999999999999988776
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=69.75 E-value=78 Score=31.30 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=31.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEE-c--CCCcEEEEEcCCceeEEe
Q 021797 157 LKDHPRKGERLTLSPSGSLAAIT-D--SLGRILLLDTQALVVVRL 198 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavt-D--slGRV~LiD~~~~~ivRm 198 (307)
|.++.+...+...||+|+.+|.+ + ....|.++|+.++...++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l 241 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV 241 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe
Confidence 55667778899999999866654 3 346899999999876443
No 115
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=69.49 E-value=38 Score=34.99 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=39.1
Q ss_pred ceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec---ccccceeeEEE
Q 021797 162 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK---GYRDASCVFME 211 (307)
Q Consensus 162 R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK---GyRDAqc~Wi~ 211 (307)
--..-|.-|||.++..++-..--+.|+|+.+|...++++ |.---.|+|..
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 446678889988777665444459999999999999987 46777899984
No 116
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=69.42 E-value=9.8 Score=35.91 Aligned_cols=47 Identities=32% Similarity=0.399 Sum_probs=33.9
Q ss_pred ccCCCceeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceeEEee--ccccc
Q 021797 157 LKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLW--KGYRD 204 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~-~~lAavtDslGRV~LiD~~~~~ivRmW--KGyRD 204 (307)
|++..++...|+.+|+ ++|+|++|.-+.|+-+|+. |.++|-+ .|..|
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D 66 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGD 66 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SS
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCC
Confidence 6677778999999995 7899999999999999985 7888855 45554
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=69.03 E-value=34 Score=34.04 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=33.1
Q ss_pred eeEEEECCCCCEEEEEc---CCCcEEEEEcCCceeEEeecccccceeeE
Q 021797 164 GERLTLSPSGSLAAITD---SLGRILLLDTQALVVVRLWKGYRDASCVF 209 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtD---slGRV~LiD~~~~~ivRmWKGyRDAqc~W 209 (307)
....++||+|++++.+. ....|.++|+.++.+.++-.++.+....|
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~ 381 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSI 381 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceE
Confidence 34578899998877752 33568999999998877776665544444
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=68.72 E-value=41 Score=33.41 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=55.6
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc---eeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
..++-+-+|..+.+.+..|-+-|+|++++++..+ |--|| .|.||+.... -++.-..
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~-------------------~cl~TGS 134 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY-------------------QCLVTGS 134 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCeeee--eecccceeEEEEecCCCc-------------------ceeEecc
Confidence 4567777899999999999999999999988765 22232 4677753220 1223344
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCe
Q 021797 242 RKGIIEVWQMRTGPRLLTIQCAKGS 266 (307)
Q Consensus 242 rRg~lEVW~~~~G~RV~a~~v~~~~ 266 (307)
-+-.|+.||+|+-.-|.++..+.-|
T Consensus 135 WDKTlKfWD~R~~~pv~t~~LPeRv 159 (347)
T KOG0647|consen 135 WDKTLKFWDTRSSNPVATLQLPERV 159 (347)
T ss_pred cccceeecccCCCCeeeeeecccee
Confidence 5677888888887666666655443
No 119
>PRK04922 tolB translocation protein TolB; Provisional
Probab=68.67 E-value=36 Score=33.69 Aligned_cols=45 Identities=33% Similarity=0.412 Sum_probs=32.6
Q ss_pred eEEEECCCCCEEEEEcCC-C--cEEEEEcCCceeEEeecccccceeeE
Q 021797 165 ERLTLSPSGSLAAITDSL-G--RILLLDTQALVVVRLWKGYRDASCVF 209 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDsl-G--RV~LiD~~~~~ivRmWKGyRDAqc~W 209 (307)
..++.||+|++++.+..- | +|.++|+.++...++-.|..+....|
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~ 386 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSF 386 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceE
Confidence 357899999988875332 2 69999999998777766655544444
No 120
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.51 E-value=8.8 Score=38.86 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.6
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEE
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFME 211 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~ 211 (307)
.+.++.+|++|+++|+.-..|-|.++|+.+++.+..- +.|+-.+|.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v---k~aH~~~VT 328 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV---KEAHLGFVT 328 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee---hhhheeeee
Confidence 5889999999999999999999999999999999887 467777664
No 121
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.06 E-value=15 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCEEEEEc-CCCcEEEEEcCCceeEEee
Q 021797 171 PSGSLAAITD-SLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 171 P~~~lAavtD-slGRV~LiD~~~~~ivRmW 199 (307)
|+++.+-+++ .-+.|.+||+.++.+++-.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 6776555654 5889999999998887654
No 122
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=67.93 E-value=37 Score=34.58 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=56.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCc---eeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~---~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
..+|..+|..+|+|+.-+.--+-|+|-.++ .+..-+-|+-. |++...-. +... |+.+..
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n----wVssvkws------------p~~~--~~~~S~ 364 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN----WVSSVKWS------------PTNE--FQLVSG 364 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh----hhhheecC------------CCCc--eEEEEE
Confidence 567888899999999888888889997764 45567888888 88764321 1122 778999
Q ss_pred CCCCeEEEeecCCCC
Q 021797 241 PRKGIIEVWQMRTGP 255 (307)
Q Consensus 241 prRg~lEVW~~~~G~ 255 (307)
..+|.+.+||+|.-.
T Consensus 365 S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCeEEEEEeccCC
Confidence 999999999999754
No 123
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=67.78 E-value=16 Score=38.18 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=60.1
Q ss_pred CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEE
Q 021797 160 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 239 (307)
Q Consensus 160 ~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIy 239 (307)
..-.+..+.++ +.+....-..|.|.++|+.++..++..+|+-. |+....... . -.++-
T Consensus 330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~----~V~sl~~~~-----------~-----~~~~S 387 (537)
T KOG0274|consen 330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG----RVYSLIVDS-----------E-----NRLLS 387 (537)
T ss_pred ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc----eEEEEEecC-----------c-----ceEEe
Confidence 44556677777 55555544455999999999999999999766 666542211 0 13466
Q ss_pred cCCCCeEEEeecCCC-CeEEEEEecCC
Q 021797 240 APRKGIIEVWQMRTG-PRLLTIQCAKG 265 (307)
Q Consensus 240 aprRg~lEVW~~~~G-~RV~a~~v~~~ 265 (307)
..-++.|+||++.++ .++.+.+...+
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCcc
Confidence 677899999999999 88888875543
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=67.63 E-value=1.2e+02 Score=29.12 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=20.3
Q ss_pred eEEEECCCCCEEEE-EcCCCcEEEEEcC
Q 021797 165 ERLTLSPSGSLAAI-TDSLGRILLLDTQ 191 (307)
Q Consensus 165 ~~I~lsP~~~lAav-tDslGRV~LiD~~ 191 (307)
.++.++|+|+++-+ ...-+.|.++++.
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 46889999987766 4666779999888
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=67.00 E-value=23 Score=36.25 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCc
Q 021797 153 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQAL 193 (307)
Q Consensus 153 pl~~l~D~~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~ 193 (307)
+++.+...+-++..+.-||.. +..|.+-..|||+++|+.+-
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 455688888899999999964 88888899999999999763
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=66.20 E-value=28 Score=34.89 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=55.8
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCc------eeEE--eecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQAL------VVVR--LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~------~ivR--mWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
..-++||+|+++|++----.|-+|.+.-+ .+.| -.||+-.|-.. .-...+ +. =
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~-~aFsn~--------------S~----r 292 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA-AAFSNS--------------ST----R 292 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee-eeeCCC--------------cc----e
Confidence 34689999999999988888888876533 3455 35888776443 322111 11 2
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccCccc
Q 021797 237 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF 275 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~ 275 (307)
+|-+.++|...||++.- --+.+..-++|..+..+
T Consensus 293 ~vtvSkDG~wriwdtdV-----rY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDV-----RYEAGQDPKILKEGSAP 326 (420)
T ss_pred eEEEecCCcEEEeeccc-----eEecCCCchHhhcCCcc
Confidence 37889999999999852 12344445555554433
No 127
>PRK01029 tolB translocation protein TolB; Provisional
Probab=66.18 E-value=44 Score=33.49 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=34.3
Q ss_pred ccCCCceeeEEEECCCCCEEEEE-cC--CCcEEEEEcCCceeEEeeccc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAIT-DS--LGRILLLDTQALVVVRLWKGY 202 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavt-Ds--lGRV~LiD~~~~~ivRmWKGy 202 (307)
|.+..........||+|+++|.+ +. ..+|.++|+.++..-++..+.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~ 370 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP 370 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC
Confidence 33444455678999999877664 43 347999999999998888774
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=65.15 E-value=30 Score=37.29 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=66.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEE-----eecc-cccceeeEEEEEecccccccccccCCCCC
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivR-----mWKG-yRDAqc~Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
|.-.+-++.+|.-.|++.-+|..-..|+|.++|+..+.-+. +-+- -|+.-|.|--.....
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-------------- 215 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-------------- 215 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--------------
Confidence 44445667888888999877888888999999999999888 4443 348888887655431
Q ss_pred CcceEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 021797 231 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 231 ~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v 262 (307)
-.+|-.=.+|.|.+||-++|..+-++.+
T Consensus 216 ----~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 216 ----STIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ----CcEEEecCCceEEEEcccCcchhhhhhh
Confidence 1557778899999999999887655543
No 129
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.63 E-value=1.1e+02 Score=29.84 Aligned_cols=133 Identities=20% Similarity=0.122 Sum_probs=70.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCC-CcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDsl-GRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
+.|.-..-..|+.||+++.+=++|+. +||.-+|+.. ..+=++-| -.++...+.. .... ......+..++
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~---~~g~~~~~---~~~~~~~~~~-G~PD---G~~vDadG~lw 227 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP---ATGPIGGR---RGFVDFDEEP-GLPD---GMAVDADGNLW 227 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc---ccCccCCc---ceEEEccCCC-CCCC---ceEEeCCCCEE
Confidence 33435667789999999999999998 8888888874 22223333 1133222110 0000 00011122322
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccc--c----CCCCCcccEEEEEeCCCCceEEEec
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSS--M----ASSPYVPLEVFLLNGDSGQLSVLNR 304 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~--~----~~~~~~~~~~~ll~~~~g~l~~in~ 304 (307)
. .....-+.|.+|+.+ |+.+..+.++. ---+++.|.|. + ++...+..+..--||-.|.|..+..
T Consensus 228 ~-~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~~~~~~~~~~~~~~G~lf~~~~ 297 (307)
T COG3386 228 V-AAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSARSGMSRMLTADPLGGGLFSLRL 297 (307)
T ss_pred E-ecccCCceEEEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEecCCCCCccccccccCceEEEEec
Confidence 1 222222389999998 99999999884 11244556662 1 1221111133336777777776653
No 130
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=62.60 E-value=10 Score=38.07 Aligned_cols=90 Identities=22% Similarity=0.177 Sum_probs=59.9
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
+-+.++-..||+|+|.+...-.|-|=+||-.+|.+-+=.|= .||=.|+.+......-.-+ + |.- .+--.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY--QAqd~fMMmd~aVlci~FS-----R--DsE--MlAsG 281 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY--QAQDNFMMMDDAVLCISFS-----R--DSE--MLASG 281 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh--hhhcceeecccceEEEeec-----c--cHH--Hhhcc
Confidence 66789999999999999999999999999999987665542 3555566543221100000 0 000 11233
Q ss_pred CCCCeEEEeecCCCCeEEEEE
Q 021797 241 PRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 241 prRg~lEVW~~~~G~RV~a~~ 261 (307)
..+|-|+||.+++|.++--|.
T Consensus 282 sqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CcCCcEEEEEEecchHHHHhh
Confidence 457999999999998765544
No 131
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.43 E-value=16 Score=35.44 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=46.6
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 210 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi 210 (307)
|.-+.|-.=..+.|-+|+|.+++.+.+-+=|+|+.++..+|.|-|++-|-..|-
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 344456666778889999999999999999999999999999999999887774
No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=62.21 E-value=64 Score=31.97 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=28.7
Q ss_pred eEEEECCCCCEEEEEcCCC---cEEEEEcCCceeEEeeccc
Q 021797 165 ERLTLSPSGSLAAITDSLG---RILLLDTQALVVVRLWKGY 202 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslG---RV~LiD~~~~~ivRmWKGy 202 (307)
.....||+|+++|.+..-| +|.++|+.++...++-.+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~ 371 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT 371 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC
Confidence 3578999999888765444 6999999998876665443
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.06 E-value=1.3e+02 Score=28.78 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeecC
Q 021797 173 GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 252 (307)
Q Consensus 173 ~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~ 252 (307)
+..+.+.+..|+|+.+|..+|.++ |+---+.++.- .|.-.+. .++.....|.|-.|+.+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~--W~~~~~~~~~~----------------~p~v~~~---~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKEL--WRAKLSSEVLS----------------PPLVANG---LVVVRTNDGRLTALDAA 163 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEe--eeeccCceeec----------------CCEEECC---EEEEECCCCeEEEEEcC
Confidence 444556667799999999999984 54222221100 0000011 23445668899999999
Q ss_pred CCCeEEEEEecC
Q 021797 253 TGPRLLTIQCAK 264 (307)
Q Consensus 253 ~G~RV~a~~v~~ 264 (307)
+|..+-.+....
T Consensus 164 tG~~~W~~~~~~ 175 (377)
T TIGR03300 164 TGERLWTYSRVT 175 (377)
T ss_pred CCceeeEEccCC
Confidence 999888776543
No 134
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=33 Score=33.48 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=50.2
Q ss_pred ccCCCceeeEEEECC--CCCEEEEEc------CCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCC
Q 021797 157 LKDHPRKGERLTLSP--SGSLAAITD------SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV 228 (307)
Q Consensus 157 l~D~~R~~~~I~lsP--~~~lAavtD------slGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~ 228 (307)
+.-..|+|.++.-|| .++||++|- .-||+.++|+..+.=|+...-|-=+.+-|=..-.+.
T Consensus 4 ~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~------------ 71 (311)
T KOG0277|consen 4 HTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN------------ 71 (311)
T ss_pred eecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC------------
Confidence 334569999999999 789888864 358999999986665665544433322221111111
Q ss_pred CCCcceEEEEEcCCCCeEEEeec
Q 021797 229 KSDYCLCLAIHAPRKGIIEVWQM 251 (307)
Q Consensus 229 k~~~~l~LVIyaprRg~lEVW~~ 251 (307)
+=-.||=|--+|.|.+|++
T Consensus 72 ----~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 72 ----HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ----CcceEEEEecCceEEEecc
Confidence 0025566777888888874
No 135
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.97 E-value=19 Score=36.86 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=58.7
Q ss_pred cccCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcce
Q 021797 156 CLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~-lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
-|+-..+-+..|++||.+. |+...-..-.|=++|+.+..++-++-.|+- -|--..+..+ .
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~---~wSC~wDlde---------------~- 248 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE---------------R- 248 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC---ceeeeeccCC---------------c-
Confidence 3677788899999999766 777666666788999999999999988843 3444433321 1
Q ss_pred EEEEEcC-CCCeEEEeecCC
Q 021797 235 CLAIHAP-RKGIIEVWQMRT 253 (307)
Q Consensus 235 ~LVIyap-rRg~lEVW~~~~ 253 (307)
=+|||. .||.|=|+|||+
T Consensus 249 -h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 249 -HVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred -ceeEEeccCceEEEEEccC
Confidence 238887 579999999997
No 136
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=61.27 E-value=56 Score=34.13 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=60.4
Q ss_pred ccccCCCceeeEEEECCC---------CCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccccccccccc
Q 021797 155 TCLKDHPRKGERLTLSPS---------GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYY 225 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~---------~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~ 225 (307)
++|.-+..++-.|-=+|+ |...|.+-..+-|.|+|+..|..+..+-.+++ =+-...-
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~----pVysvaf---------- 460 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE----PVYSVAF---------- 460 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC----ceEEEEe----------
Confidence 345555566666666664 33455566777899999999999999866666 1111110
Q ss_pred CCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 226 APVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 226 ~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
+|. . ..+-|..++|.|-||++|+|.-+-.-.
T Consensus 461 S~~---g--~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 461 SPN---G--RYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred cCC---C--cEEEecCCCCeeEeccccchheeEeec
Confidence 111 1 256789999999999999998887665
No 137
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.03 E-value=44 Score=35.37 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=54.3
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
...+.+.+|+..++++.=..|-|+|+|..++.....=-..+=..++|+. +.+ +++-+-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp-------------------~ga--i~~V~s~ 319 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHP-------------------DGA--IFVVGSE 319 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcC-------------------CCc--EEEEEcC
Confidence 3556677899988888888899999999999887664444455555552 123 5567888
Q ss_pred CCeEEEeecCCCCe
Q 021797 243 KGIIEVWQMRTGPR 256 (307)
Q Consensus 243 Rg~lEVW~~~~G~R 256 (307)
||.|-+|||-..+-
T Consensus 320 qGelQ~FD~ALspi 333 (545)
T PF11768_consen 320 QGELQCFDMALSPI 333 (545)
T ss_pred CceEEEEEeecCcc
Confidence 99999999987653
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.47 E-value=9 Score=41.76 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCc---eeEEeeccc-ccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEE
Q 021797 173 GSLAAITDSLGRILLLDTQAL---VVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 248 (307)
Q Consensus 173 ~~lAavtDslGRV~LiD~~~~---~ivRmWKGy-RDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEV 248 (307)
.+|+|++-+.|-|.++|+..- ..+.+++-+ |.|.+-=+... .-.++|-+.++|.|++
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-------------------ep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-------------------EPNILISGSQDGTVKC 160 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC-------------------CccEEEecCCCceEEE
Confidence 478999999999999999983 223333332 22222111111 1158899999999999
Q ss_pred eecCCCCeEEEEE
Q 021797 249 WQMRTGPRLLTIQ 261 (307)
Q Consensus 249 W~~~~G~RV~a~~ 261 (307)
||||.-.-+-+|.
T Consensus 161 ~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 161 WDLRSKKSKSTFR 173 (839)
T ss_pred Eeeeccccccccc
Confidence 9999866555554
No 139
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=60.08 E-value=1.1e+02 Score=29.18 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccCCCC-CcccEEEEEeCCCCceEEE
Q 021797 240 APRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSP-YVPLEVFLLNGDSGQLSVL 302 (307)
Q Consensus 240 aprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~-~~~~~~~ll~~~~g~l~~i 302 (307)
.-+.|.|-+++.++|+.+..+.++.+. + .+++ .....+ ++-..||.|..|
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~--------~----~~sp~~~~~~l-~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSG--------I----ASPPVVVGDGL-LVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCc--------c----ccCCEEECCEE-EEEeCCceEEEe
Confidence 346789999999999988877754321 1 1223 223444 444557888765
No 140
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=60.02 E-value=19 Score=34.93 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=33.9
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccc
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 203 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyR 203 (307)
|..=+=..++=|||+++.|.+++-|-|-++|+.. ..+.+-+.=+
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 3333345677899999999999999999999987 5555666644
No 141
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.39 E-value=33 Score=34.28 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccc---ccceeeEEEEEecccccccccccCCCCCCcceEEE
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY---RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 237 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGy---RDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LV 237 (307)
......|++||+|+++|+--.-|.+.++...-...+.-..== +--|+.|.--....- . +--.|+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l------~-------~~~~l~ 282 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL------S-------WEDELL 282 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE------E-------eCCEEE
Confidence 356899999999998888555699988877666555443322 445666763110000 0 000355
Q ss_pred EEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccC-ccccc
Q 021797 238 IHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT-YRFGS 277 (307)
Q Consensus 238 IyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~-~~~~~ 277 (307)
++.|....+..|-- ++ +..+.=.-|.|++..+ +.|+.
T Consensus 283 lvg~~~~~~~~~~~--~~-~~l~~E~DG~riit~~~~~~l~ 320 (410)
T PF04841_consen 283 LVGPDGDSISFWYD--GP-VILVSEIDGVRIITSTSHEFLQ 320 (410)
T ss_pred EECCCCCceEEecc--Cc-eEEeccCCceEEEeCCceEEEE
Confidence 55665555544432 22 4555555667777665 33444
No 142
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=59.30 E-value=1.1e+02 Score=26.52 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEe
Q 021797 170 SPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVW 249 (307)
Q Consensus 170 sP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW 249 (307)
.+++..+.+++.-|.|..+|..+|.++--..--...... .+. .+.. .+| +...|.|..+
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~----------------~~~~-v~v--~~~~~~l~~~ 91 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV----------------DGGR-VYV--GTSDGSLYAL 91 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE----------------ETTE-EEE--EETTSEEEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee----------------cccc-ccc--ccceeeeEec
Confidence 334555556689999999999999875322210000000 000 0112 222 2256789999
Q ss_pred ecCCCCeEEEEE
Q 021797 250 QMRTGPRLLTIQ 261 (307)
Q Consensus 250 ~~~~G~RV~a~~ 261 (307)
++.+|..+-.+.
T Consensus 92 d~~tG~~~W~~~ 103 (238)
T PF13360_consen 92 DAKTGKVLWSIY 103 (238)
T ss_dssp ETTTSCEEEEEE
T ss_pred ccCCcceeeeec
Confidence 999999988863
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=59.04 E-value=12 Score=40.07 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCcee
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVV 195 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~i 195 (307)
+.+|.+||+|+|.|+.+..|-|.++|+.+++-
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence 67899999999999999999999999998863
No 144
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=58.36 E-value=32 Score=24.42 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.3
Q ss_pred eEEEECCC-C--CEEEEEcCCCcEEEEEcCCce
Q 021797 165 ERLTLSPS-G--SLAAITDSLGRILLLDTQALV 194 (307)
Q Consensus 165 ~~I~lsP~-~--~lAavtDslGRV~LiD~~~~~ 194 (307)
.++.-||+ + .|.|.|.--|||-|+|+.++.
T Consensus 4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred EEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 45667874 3 699999999999999998643
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.84 E-value=12 Score=40.62 Aligned_cols=49 Identities=29% Similarity=0.272 Sum_probs=44.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 205 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA 205 (307)
|.-+.--+++|.+++...|+|..-..|-|=++|+..+.++|-.-|+++-
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC
Confidence 5555667899999999999999999999999999999999999999874
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=57.05 E-value=8.4 Score=39.68 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=40.0
Q ss_pred ccccCCCc--eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec
Q 021797 155 TCLKDHPR--KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 200 (307)
Q Consensus 155 ~~l~D~~R--~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK 200 (307)
..|.-++- .+.++++|-||++.+..|-.|.|+++|+...++||.--
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 34555555 79999999999999999999999999999999999653
No 147
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=56.38 E-value=1.7e+02 Score=30.55 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=60.5
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
...++++-|||-++++.-..|-|=+||+.....+-=+-|+ .+.+.=|...|+ ..|||.=+ -
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsEN-----------------GY~Lat~a-d 409 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSEN-----------------GYWLATAA-D 409 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccC-----------------ceEEEEEe-c
Confidence 3677888999999999888899999999999888888773 444444444333 33666655 5
Q ss_pred CCeEEEeecCCCCeEEEEEecC
Q 021797 243 KGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~~v~~ 264 (307)
+|.|.+||+|--.-+-+|....
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CCeEEEEEehhhcccceeeccc
Confidence 7889999999766555555443
No 148
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=56.22 E-value=13 Score=37.37 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=67.4
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeE
Q 021797 167 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 246 (307)
Q Consensus 167 I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~l 246 (307)
.+.||+|+|+|+.... |+++=|+.+.++++++-= =| ++..|+=.. +. .|..--+-+|+.|
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ld-ki~yieW~a----------------ds-~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LD-KIVYIEWKA----------------DS-CHILCVAYKDPKV 73 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HH-Hhhheeeec----------------cc-eeeeeeeeccceE
Confidence 5789999999996555 999999999999887522 00 111222111 11 1334445679999
Q ss_pred EEeecCCCCeEEEEEec----------CCeEEeccCccccc---c---cCCCC------CcccEEEEEeCCCCceEEE
Q 021797 247 EVWQMRTGPRLLTIQCA----------KGSKILQPTYRFGS---S---MASSP------YVPLEVFLLNGDSGQLSVL 302 (307)
Q Consensus 247 EVW~~~~G~RV~a~~v~----------~~~~Ll~~~~~~~~---~---~~~~~------~~~~~~~ll~~~~g~l~~i 302 (307)
.||++-+-.=-+.+..| +++|=|-.+..|-. + .+.+. .+-.+.+-++| ||+-..|
T Consensus 74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai 150 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAI 150 (447)
T ss_pred EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeee
Confidence 99999775554444443 44533333333322 1 11111 22257788888 5776655
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=55.82 E-value=99 Score=32.25 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=33.2
Q ss_pred cCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcC
Q 021797 150 RASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQ 191 (307)
Q Consensus 150 ~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~ 191 (307)
+++|+-...+++|.+.+.+-||++--+++|+-.-+|=++|..
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 455654578899999999999965438888888888888883
No 150
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=55.49 E-value=1.5e+02 Score=33.70 Aligned_cols=36 Identities=28% Similarity=0.115 Sum_probs=27.8
Q ss_pred eeEEEECCCCCEEEEEcCC-CcEEEEEcCCceeEEee
Q 021797 164 GERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLW 199 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDsl-GRV~LiD~~~~~ivRmW 199 (307)
-..|+++|+|+.+.++|.. +||..+|+.++.+.-+.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4569999999877777765 89999999987654333
No 151
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=55.41 E-value=1.7e+02 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=32.3
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccCCCC-CcccEEEEEeCCCCceEEEec
Q 021797 240 APRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSP-YVPLEVFLLNGDSGQLSVLNR 304 (307)
Q Consensus 240 aprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~-~~~~~~~ll~~~~g~l~~in~ 304 (307)
.-.+|.|.+.+..+|..+...+++.+. + .+++ ..-..+|+-+. +|.|..|.+
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~--------~----~s~P~~~~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSSG--------F----LSEPVVADDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCc--------c----eeCCEEECCEEEEEeC-CceEEEEeC
Confidence 345688888888888887777764221 1 1223 23345665555 799988764
No 152
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=54.92 E-value=21 Score=34.32 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=35.2
Q ss_pred ccCCC---ceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee
Q 021797 157 LKDHP---RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 157 l~D~~---R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW 199 (307)
+.|.. --..+++++|+|+|.|..-..---+|+|+..+.+|.-+
T Consensus 224 ~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 44544 34678999999999999877778999999999888766
No 153
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=53.67 E-value=2.1e+02 Score=27.41 Aligned_cols=124 Identities=10% Similarity=0.133 Sum_probs=66.8
Q ss_pred CceeeEEEECCCCCEEEEEc-CCCcEEEEEcCC-ceeEEe---ecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 161 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQA-LVVVRL---WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtD-slGRV~LiD~~~-~~ivRm---WKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
...-.+|+++|+++++.++. .-|.|.++++.. |.+-.. ++-. -... +.. ++...+.+
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~---------g~g~-~~~--------rq~~~h~H 147 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE---------GSGP-NPD--------RQEGPHPH 147 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE---------EEES-STT--------TTSSTCEE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC---------CCCC-ccc--------ccccccce
Confidence 44557899999999999987 689999999987 555443 2110 0000 000 11112224
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCCe-EEecc-Ccccc-cccC-CCCCcc--cEEEEEeCCCCceEEEe
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS-KILQP-TYRFG-SSMA-SSPYVP--LEVFLLNGDSGQLSVLN 303 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~-~Ll~~-~~~~~-~~~~-~~~~~~--~~~~ll~~~~g~l~~in 303 (307)
=+.+.|....|-|=++- ..||..+.+..+. .|-.. ...+. |+.. +--++| ..+|+++..++.|..++
T Consensus 148 ~v~~~pdg~~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp EEEE-TTSSEEEEEETT-TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred eEEECCCCCEEEEEecC-CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 45677776777676764 5688888877664 23220 11111 1100 112444 46666666666666554
No 154
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=52.91 E-value=2.1e+02 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=22.4
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEe
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQC 262 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v 262 (307)
+..-..++..|.||++++|.++..+..
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred eEeeccCCceEEEEeccCcceEEEecc
Confidence 334467999999999999999998883
No 155
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.65 E-value=87 Score=35.41 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=71.4
Q ss_pred cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 156 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
-|.++.--..-|+.-|++-+++..-..=.|=+|+-.+...+--.+|+=| +|.+..=- .-+=
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD----YVRt~~FH---------------heyP 106 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD----YVRTVFFH---------------HEYP 106 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc----eeEEeecc---------------CCCc
Confidence 3667777788899999999999987777899999999999999999999 88764310 0112
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
-+|.|.-+-.|.||++|++.+|+..+
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEe
Confidence 56889999999999999999999887
No 156
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.65 E-value=37 Score=34.90 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=69.3
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcce
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
..|.-.--.+++|..+++++...++-+.+-+-|||+..+....-.-|+-| ++.+..-+ . ...
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd------kVt~ak~~-----------~-~~~ 274 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD------KVTAAKFK-----------L-SHS 274 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccc------ceeeehhh-----------c-ccc
Confidence 34666666788999999999888888999999999999999999999988 33332110 0 110
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEecc
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQP 271 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~ 271 (307)
=||-+.++-.|+.|+|+.+.+.-++.++..|.=|-.
T Consensus 275 -~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 275 -RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred -ceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 167777777777777777666666665555444433
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=50.38 E-value=70 Score=34.60 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCce---------------------------eEEeecccccceeeEEE
Q 021797 160 HPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALV---------------------------VVRLWKGYRDASCVFME 211 (307)
Q Consensus 160 ~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~---------------------------ivRmWKGyRDAqc~Wi~ 211 (307)
+.+..-++|..| +-..+++.-..|-|+|+|+.--. =+|=||..-.+-.+-|.
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Q ss_pred EEecccccccccccCCCCCCcceEEEEEcCC-CCeEEEeecCCCCeEEEEEecCCeEEeccCcccccc----cCCCC-Cc
Q 021797 212 MLVNKDAATSSAYYAPVKSDYCLCLAIHAPR-KGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSS----MASSP-YV 285 (307)
Q Consensus 212 ~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr-Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~----~~~~~-~~ 285 (307)
+..-.|.. +++-|.- +|+|+|||+|...+.+...=..--.+.+.+-+..|. .++++ |-
T Consensus 223 vv~fkDe~----------------tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 223 VVLFKDES----------------TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred EEEEeccc----------------eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Q ss_pred ccEEEEEeCCCCceEEEe
Q 021797 286 PLEVFLLNGDSGQLSVLN 303 (307)
Q Consensus 286 ~~~~~ll~~~~g~l~~in 303 (307)
...|. |++|.+.|
T Consensus 287 ~AsCt-----D~sIy~yn 299 (720)
T KOG0321|consen 287 FASCT-----DNSIYFYN 299 (720)
T ss_pred EEEec-----CCcEEEEe
No 158
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=50.31 E-value=44 Score=36.83 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=57.6
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
.-.-..+.++|.|-|+|++=+.--+.++|-.+|+.+--.-|+-++--+-.-.. | .. -.|.+
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n---D--------------Ck--HlISv 701 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN---D--------------CK--HLISV 701 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc---c--------------ch--hheee
Confidence 34467899999999999999999999999999988877778888654433221 1 11 23888
Q ss_pred CCCCeEEEeecCC
Q 021797 241 PRKGIIEVWQMRT 253 (307)
Q Consensus 241 prRg~lEVW~~~~ 253 (307)
.-+|.|-||.+.+
T Consensus 702 sgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 702 SGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEECch
Confidence 8899999999986
No 159
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=50.12 E-value=63 Score=32.25 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=50.6
Q ss_pred eeEEEECC---CCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 164 GERLTLSP---SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 164 ~~~I~lsP---~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
+-+=+.|| .+.|+|+.-..=.|=|-|++.|-.-+...|+||--++ .+=. .+.+ |..--+
T Consensus 146 VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla----V~Ws-----------p~~e---~vLatg 207 (397)
T KOG4283|consen 146 VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA----VEWS-----------PSSE---WVLATG 207 (397)
T ss_pred eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE----EEec-----------cCce---eEEEec
Confidence 34456677 4678888766678999999999999999999994322 1110 1122 344456
Q ss_pred CCCCeEEEeecCC
Q 021797 241 PRKGIIEVWQMRT 253 (307)
Q Consensus 241 prRg~lEVW~~~~ 253 (307)
.-+|.+.+||+|-
T Consensus 208 saDg~irlWDiRr 220 (397)
T KOG4283|consen 208 SADGAIRLWDIRR 220 (397)
T ss_pred CCCceEEEEEeec
Confidence 7789999999985
No 160
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.87 E-value=1e+02 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=27.1
Q ss_pred eEEEECCCCCEEEEE-cCCC--cEEEEEcCCceeEEeeccccc
Q 021797 165 ERLTLSPSGSLAAIT-DSLG--RILLLDTQALVVVRLWKGYRD 204 (307)
Q Consensus 165 ~~I~lsP~~~lAavt-DslG--RV~LiD~~~~~ivRmWKGyRD 204 (307)
...+.+|+|++++.+ ..-| +|.++|+.++.+-.+=++..|
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d 395 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLD 395 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCC
Confidence 346789999887775 3233 788899999876555444333
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.76 E-value=16 Score=41.10 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceeEEeecc----cccceeeEEEEEecccccccccccC
Q 021797 152 SPLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKG----YRDASCVFMEMLVNKDAATSSAYYA 226 (307)
Q Consensus 152 ~pl~~l~D~~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~~ivRmWKG----yRDAqc~Wi~~~~~~~~~~~~~~~~ 226 (307)
+|+..|.-+.|-+.++.-||.. +|++.+--.+|||.++..+|++|--.-- |+|-| |-. .+
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~--w~p----r~--------- 308 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ--WCP----RN--------- 308 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee--ecC----CC---------
Confidence 3445566678999999999955 9999999999999999999999987755 44421 221 11
Q ss_pred CCCCCcceEEEEEcCCCCeEEEeecCCCC
Q 021797 227 PVKSDYCLCLAIHAPRKGIIEVWQMRTGP 255 (307)
Q Consensus 227 ~~k~~~~l~LVIyaprRg~lEVW~~~~G~ 255 (307)
.. ++=-|--.|-|+|++++.+.
T Consensus 309 -----P~--~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 309 -----PS--VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----cc--hhhhheeccceeeeeeecCC
Confidence 11 22334458999999998766
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=49.33 E-value=1.1e+02 Score=31.23 Aligned_cols=85 Identities=20% Similarity=0.300 Sum_probs=58.6
Q ss_pred cCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCc---eeEEeecccccceeeEEEEEecccccccccccCCCCCCcc
Q 021797 158 KDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 233 (307)
Q Consensus 158 ~D~~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~---~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 233 (307)
.-..+.++.|+=||+. ..+|.+--.|-|=++|+..+ -.+-. |.+-. =|.|..=+ ++ .-
T Consensus 254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s----DVNVISWn-----------r~--~~ 315 (440)
T KOG0302|consen 254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS----DVNVISWN-----------RR--EP 315 (440)
T ss_pred cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC----ceeeEEcc-----------CC--cc
Confidence 3378899999999975 67778888899999999888 33322 43322 33332211 11 12
Q ss_pred eEEEEEcCCCCeEEEeecCC---CCeEEEEEe
Q 021797 234 LCLAIHAPRKGIIEVWQMRT---GPRLLTIQC 262 (307)
Q Consensus 234 l~LVIyaprRg~lEVW~~~~---G~RV~a~~v 262 (307)
|.-..--.|.+.||++|+ |.-|+.|+-
T Consensus 316 --lLasG~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 316 --LLASGGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred --eeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence 556777899999999998 677888873
No 163
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=49.30 E-value=1.4e+02 Score=28.64 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=25.9
Q ss_pred eeeEEEECCCCCEEEEEcCCC---cEEEEEcCCcee
Q 021797 163 KGERLTLSPSGSLAAITDSLG---RILLLDTQALVV 195 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslG---RV~LiD~~~~~i 195 (307)
....+..+|+|++++.++..+ +|.++|+.++..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 345678899999988876655 899999988653
No 164
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=49.20 E-value=1.2e+02 Score=30.38 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=57.2
Q ss_pred ceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEeeccc-ccceeeEEEEEecccccccccccCCCC-----CCcce
Q 021797 162 RKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVK-----SDYCL 234 (307)
Q Consensus 162 R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmWKGy-RDAqc~Wi~~~~~~~~~~~~~~~~~~k-----~~~~l 234 (307)
-.+.++.++| -|+|....-..|-|.|+|+++..=-+- .|| =++-|- |..+.+ +.+++.... .|..+
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h~-----~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQHE-----NGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccCC-----ccceeeeeeeEEeeecCce
Confidence 3467889999 589999999999999999987641100 000 011121 111100 111111110 13344
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~v~ 263 (307)
| +-..-+..|+|||+.+-+-+..|+.+
T Consensus 117 F--tssSFDhtlKVWDtnTlQ~a~~F~me 143 (397)
T KOG4283|consen 117 F--TSSSFDHTLKVWDTNTLQEAVDFKME 143 (397)
T ss_pred e--ecccccceEEEeecccceeeEEeecC
Confidence 4 78888999999999999999999855
No 165
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=49.06 E-value=43 Score=30.34 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccC
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 272 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~ 272 (307)
||+.+.+ +.||||++.+|..|-.+. .++.|+|..+
T Consensus 240 yli~~~~--~~iEV~~~~~~~lvQ~i~-~~~~~~l~~~ 274 (275)
T PF00780_consen 240 YLIAFSS--NSIEVRSLETGELVQTIP-LPNIRLLCSG 274 (275)
T ss_pred EEEEECC--CEEEEEECcCCcEEEEEE-CCCEEEEecC
Confidence 5555555 559999999999999998 7788887654
No 166
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=48.89 E-value=41 Score=34.03 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcCCCcEEEEEcCCcee---EEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeE
Q 021797 170 SPSGSLAAITDSLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 246 (307)
Q Consensus 170 sP~~~lAavtDslGRV~LiD~~~~~i---vRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~l 246 (307)
.-++++..++|--|.|-|+|+..-.- |+-+.|+=+- -+-+++..++ | -. .|.-+..+=..
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~---------e-----eg--~I~s~GdDcyt 370 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKE---------E-----EG--SIFSVGDDCYT 370 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-cccccccccc---------c-----cc--eEEEccCeeEE
Confidence 34788999999999999999877666 8888887541 1122221111 1 11 44557788889
Q ss_pred EEeecCCCCeEEEEE
Q 021797 247 EVWQMRTGPRLLTIQ 261 (307)
Q Consensus 247 EVW~~~~G~RV~a~~ 261 (307)
.||.+++|..+.++.
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999999999998876
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.74 E-value=1e+02 Score=35.59 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCcEEEEEcCCc---eeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEE
Q 021797 172 SGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 248 (307)
Q Consensus 172 ~~~lAavtDslGRV~LiD~~~~---~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEV 248 (307)
.|..+|+.=..|+|=|+|.... ..|.|||-+-|-+= |.-..- . +. .+-=++-+...|.|++
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~sl-q-----------~~--G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSL-Q-----------RQ--GLGELVSGSQDGDIQL 1283 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCccc--ceeEEe-e-----------cC--CCcceeeeccCCeEEE
Confidence 3677777777899999998643 47999998888221 321110 0 00 1113466777788888
Q ss_pred eecCC
Q 021797 249 WQMRT 253 (307)
Q Consensus 249 W~~~~ 253 (307)
|++|.
T Consensus 1284 ~DlR~ 1288 (1387)
T KOG1517|consen 1284 LDLRM 1288 (1387)
T ss_pred Eeccc
Confidence 88776
No 168
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.56 E-value=69 Score=32.28 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=63.2
Q ss_pred cCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eeEEeecccccceeeEEEEEecccccccccccCCC
Q 021797 150 RASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV 228 (307)
Q Consensus 150 ~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~-~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~ 228 (307)
...+++.|.-..-+-.+.+--|+.+|++++...--.-|+|.... ..|-++.|+-|---.=+- ..
T Consensus 303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF--~~------------- 367 (481)
T KOG0300|consen 303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF--NT------------- 367 (481)
T ss_pred cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE--ec-------------
Confidence 34455557777778889999999999999877777778887643 346688888772211111 00
Q ss_pred CCCcceEEEEEcCCCCeEEEeecCCC-CeEEEEEec
Q 021797 229 KSDYCLCLAIHAPRKGIIEVWQMRTG-PRLLTIQCA 263 (307)
Q Consensus 229 k~~~~l~LVIyaprRg~lEVW~~~~G-~RV~a~~v~ 263 (307)
+ .-|+...-+..|+||++++- .-+++++..
T Consensus 368 --d---d~vVSgSDDrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 368 --D---DRVVSGSDDRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred --C---CceeecCCCceEEEeeeccccCcceeeecC
Confidence 1 24567777889999999983 345666533
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=47.51 E-value=1.9e+02 Score=25.13 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=60.0
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-eEEeecccccceeeEEEEEecccccccccccCCCCCCcceE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 235 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~-ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 235 (307)
+......+..+...+++.+.+.....+.|.++|...+. .+..+++..+ ..+....... .+...+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------~~~~~~ 125 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSS------------PDGNSI 125 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC---CceeeEEEEC------------CCcceE
Confidence 44556778899999999999999999999999999998 8888988665 2222111100 000113
Q ss_pred EEEEcCCCCeEEEeecCC-CCeEEEEE
Q 021797 236 LAIHAPRKGIIEVWQMRT-GPRLLTIQ 261 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~-G~RV~a~~ 261 (307)
++......+.+.+|+... +..+..+.
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEe
Confidence 333344578888888876 44444444
No 170
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=47.32 E-value=2.9e+02 Score=27.53 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=60.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec-ccccceeeEEEEEe----cccc-------c---cccc--cc
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLV----NKDA-------A---TSSA--YY 225 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK-GyRDAqc~Wi~~~~----~~~~-------~---~~~~--~~ 225 (307)
.+.++..+|.+....++-=.|-+.|+|+..-.+.-.+| +.-=-.|+|..-.. ..|. + ..+. |.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC
Confidence 46778888977666666688999999988774443332 11222355553100 0010 0 0111 11
Q ss_pred CCCCC---CcceEEEEEcCCCCeEEEeecC---------CCCeEEEEEecCCeEEe
Q 021797 226 APVKS---DYCLCLAIHAPRKGIIEVWQMR---------TGPRLLTIQCAKGSKIL 269 (307)
Q Consensus 226 ~~~k~---~~~l~LVIyaprRg~lEVW~~~---------~G~RV~a~~v~~~~~Ll 269 (307)
++..- -+.--.||-..=++.|++|++| ++.+|++..+..+--++
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvV 150 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVV 150 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEE
Confidence 11110 0001245667778899999999 57889999888766665
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=46.84 E-value=3.7e+02 Score=28.28 Aligned_cols=221 Identities=22% Similarity=0.259 Sum_probs=114.2
Q ss_pred EechhHHHHHHHHHHhhccc-cCCCCCccCCcccccCCC-----------------CCccccccccCCCcceeeeEEecc
Q 021797 8 FDGSEIQKMLQRWFQDSNSN-FWDQKPKQRDSEDLENSY-----------------ERLPHQLWNVSKYGPCADAAITGL 69 (307)
Q Consensus 8 i~G~~l~~~L~~c~~q~~~~-~~~~~~~~~~~~~~~~~~-----------------~~L~ykKW~~~~~~~i~Daa~~G~ 69 (307)
++|-+...-||+-++.+.-. -|-.+.+..+..+.+... ..|+-++-++. .|+||-+--+
T Consensus 135 ~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~k---rlkDaNa~~p 211 (514)
T KOG2055|consen 135 LSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIK---RLKDANAAHP 211 (514)
T ss_pred cchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHHHhhhcccccccccCCCceeeeE---eecccccCCc
Confidence 67888888888887766443 576666553322222211 11222221111 3555543221
Q ss_pred CCCCchhhhccccc-eeEEEecCCceeEEEeecCCCCcchhhHHHhhhh--hHHHHH-----HH--hhhh--hhccCCCC
Q 021797 70 MPPPLMEVQSSQRY-FCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVV--PATFST-----IS--SLSK--MIWRSEQS 137 (307)
Q Consensus 70 ~~pp~~~~~s~~~~-~~~i~vG~~P~la~y~~~~~~~~s~~~a~~s~va--~Av~s~-----~~--s~ak--~~W~~~~~ 137 (307)
...+.... +-|.+ -.++++|-+=.+.+|...+...+-+.+.-+.+-. .+.+.. +. +-.| ..|.
T Consensus 212 s~~~I~sv-~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD---- 286 (514)
T KOG2055|consen 212 SHGGITSV-QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD---- 286 (514)
T ss_pred CcCCceEE-EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee----
Confidence 11111111 11222 2478889999999999998777511110011000 000000 00 0000 0110
Q ss_pred CCCCCCCCCCcccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccc-cceeeEEEEEecc
Q 021797 138 PKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFMEMLVNK 216 (307)
Q Consensus 138 ~~~~e~~p~~~~~a~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyR-DAqc~Wi~~~~~~ 216 (307)
=++.+. .+-.|+.+.. .+..+...+||+++++|+.-+.|-|.|+-..++..|.-+|=-= =+.+.|- .
T Consensus 287 --le~ak~---~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fs-----S 354 (514)
T KOG2055|consen 287 --LETAKV---TKLKPPYGVE--EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFS-----S 354 (514)
T ss_pred --cccccc---ccccCCCCcc--cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEe-----c
Confidence 011111 1123444343 6778999999999999999999999999999999887665110 0011111 0
Q ss_pred cccccccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 021797 217 DAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 217 ~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
| +| . |++ ..-.|-|-||++++-..+..|....
T Consensus 355 d----------sk---~--l~~-~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 355 D----------SK---E--LLA-SGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred C----------Cc---E--EEE-EcCCceEEEEecCCcceEEEEeecC
Confidence 1 11 1 222 2346889999999988888777543
No 172
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=46.23 E-value=74 Score=32.05 Aligned_cols=85 Identities=21% Similarity=0.152 Sum_probs=58.2
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcce
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 234 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 234 (307)
..|.-++.++..++.|-||++.|+.-..|-|.|+|+.. -.-|-+| +|....+ -. +.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D----F~~~eHr-----~~R~nve-----------~d--hp-- 135 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD----FENKEHR-----CIRQNVE-----------YD--HP-- 135 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch----hhhhhhh-----Hhhcccc-----------CC--Cc--
Confidence 45888999999999999999999988888888888755 1111111 1111000 01 11
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 021797 235 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 264 (307)
Q Consensus 235 ~LVIyaprRg~lEVW~~~~G~RV~a~~v~~ 264 (307)
-+|.|||-=..+-||-- .|..++.+...|
T Consensus 136 T~V~FapDc~s~vv~~~-~g~~l~vyk~~K 164 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVK-RGNKLCVYKLVK 164 (420)
T ss_pred eEEEECCCcceEEEEEc-cCCEEEEEEeee
Confidence 48899998888888866 788888887554
No 173
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.79 E-value=3.3e+02 Score=27.36 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=27.3
Q ss_pred eEEEECCCCCEEEEE---cCCCcEEEEEcCCceeEEeeccc
Q 021797 165 ERLTLSPSGSLAAIT---DSLGRILLLDTQALVVVRLWKGY 202 (307)
Q Consensus 165 ~~I~lsP~~~lAavt---DslGRV~LiD~~~~~ivRmWKGy 202 (307)
..-..||||+.++.+ +.-..|.++|+.++..-++=++-
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC
Confidence 346689999766553 34468999999999877765543
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.92 E-value=78 Score=32.27 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=58.0
Q ss_pred ccCCCceeeEEEECCCCCEEEEE-cCCCcEEEEEcCCceeEEeecc-----cccceeeEEEEEecccccccccccCCCCC
Q 021797 157 LKDHPRKGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKG-----YRDASCVFMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavt-DslGRV~LiD~~~~~ivRmWKG-----yRDAqc~Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
+....+++..|..||||++.|.. -+.+| +||+.+|..+ -||+ |+=+.|-|..... +
T Consensus 182 e~~~~~eV~DL~FS~dgk~lasig~d~~~--VW~~~~g~~~-a~~t~~~k~~~~~~cRF~~d~~--------------~- 243 (398)
T KOG0771|consen 182 EIAHHAEVKDLDFSPDGKFLASIGADSAR--VWSVNTGAAL-ARKTPFSKDEMFSSCRFSVDNA--------------Q- 243 (398)
T ss_pred hHhhcCccccceeCCCCcEEEEecCCceE--EEEeccCchh-hhcCCcccchhhhhceecccCC--------------C-
Confidence 66678999999999999877773 22454 5888888444 3555 4444555554321 1
Q ss_pred CcceEEEEEcCCCCeEEEeecCCCC---------------eEEEEEecCCeEEeccC
Q 021797 231 DYCLCLAIHAPRKGIIEVWQMRTGP---------------RLLTIQCAKGSKILQPT 272 (307)
Q Consensus 231 ~~~l~LVIyaprRg~lEVW~~~~G~---------------RV~a~~v~~~~~Ll~~~ 272 (307)
..|+|+=-.-+-|.|-.|++-... =|.++.|+..++++--+
T Consensus 244 -~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 244 -ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 123333333333444555544433 37788888888888433
No 175
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.87 E-value=7.6 Score=31.79 Aligned_cols=10 Identities=60% Similarity=1.212 Sum_probs=8.1
Q ss_pred eeccccccee
Q 021797 198 LWKGYRDASC 207 (307)
Q Consensus 198 mWKGyRDAqc 207 (307)
=|||||||.+
T Consensus 53 ~wkg~RdCHi 62 (91)
T COG3041 53 DWKGYRDCHI 62 (91)
T ss_pred Cccchhhccc
Confidence 3999999754
No 176
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=43.04 E-value=2.5e+02 Score=25.29 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=64.1
Q ss_pred eeEEEECCC-CCEEEEEcCCCcEEEEEcCCceeEEee------c------ccccc-eeeEEEEEecccccccccccCCCC
Q 021797 164 GERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLW------K------GYRDA-SCVFMEMLVNKDAATSSAYYAPVK 229 (307)
Q Consensus 164 ~~~I~lsP~-~~lAavtDslGRV~LiD~~~~~ivRmW------K------GyRDA-qc~Wi~~~~~~~~~~~~~~~~~~k 229 (307)
+..|.+-|. +.+++.+| |.|.++|+.......-= | ...+. .|..+.. ...
T Consensus 38 I~ql~vl~~~~~llvLsd--~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~--------------~~~ 101 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSD--GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAV--------------NGG 101 (275)
T ss_pred EEEEEEecccCEEEEEcC--CccEEEEchhhccccccccccccccccccccccccCCeeEEee--------------ccc
Confidence 888999995 56777788 99999999887665410 0 11000 1111110 001
Q ss_pred CCcceEEEEEcCCCCeEEEeecCC----C-CeEEEEEecCCeEEeccCcc--cccccCCCCCcccEEEEEeCCCCceEEE
Q 021797 230 SDYCLCLAIHAPRKGIIEVWQMRT----G-PRLLTIQCAKGSKILQPTYR--FGSSMASSPYVPLEVFLLNGDSGQLSVL 302 (307)
Q Consensus 230 ~~~~l~LVIyaprRg~lEVW~~~~----G-~RV~a~~v~~~~~Ll~~~~~--~~~~~~~~~~~~~~~~ll~~~~g~l~~i 302 (307)
.....+|++...| .|.||.... . ..+.-+.++...+-+.-... ..|. ..+.+++|.++|+.+++
T Consensus 102 ~~~~~~L~va~kk--~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-------~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 102 HEGSRRLCVAVKK--KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-------SKGFYLIDLNTGSPSEL 172 (275)
T ss_pred cccceEEEEEECC--EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-------CCceEEEecCCCCceEE
Confidence 1123467787777 555555543 2 56677777766554433211 1111 35566777777777665
Q ss_pred e
Q 021797 303 N 303 (307)
Q Consensus 303 n 303 (307)
.
T Consensus 173 ~ 173 (275)
T PF00780_consen 173 L 173 (275)
T ss_pred e
Confidence 4
No 177
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.36 E-value=49 Score=32.51 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.6
Q ss_pred CceeeEEEECCCCCEEEE-EcCCCcEEEEEcCCceeEEee
Q 021797 161 PRKGERLTLSPSGSLAAI-TDSLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAav-tDslGRV~LiD~~~~~ivRmW 199 (307)
+.-+-+|+.+++|.++|+ +=.-|+|.++|..+|.++..-
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 355899999999987666 588999999999999987643
No 178
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.01 E-value=1.1e+02 Score=31.72 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=65.7
Q ss_pred cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeE-Eeecc-------cccceeeE-EEEEecccccccccccC
Q 021797 156 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV-RLWKG-------YRDASCVF-MEMLVNKDAATSSAYYA 226 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~iv-RmWKG-------yRDAqc~W-i~~~~~~~~~~~~~~~~ 226 (307)
.+--+++.+.+++++|+.++.-.++-.|-|+=+|+-+|.-+ .+||- |..-+..| ..+.+.. ..
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil--------~~ 208 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL--------TL 208 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE--------EE
Confidence 35667888999999999999999999999999999999988 57753 22222222 0000000 00
Q ss_pred CCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 021797 227 PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 227 ~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
...+|.. .+....+...|-||+++++..|.+|+.-.+
T Consensus 209 avS~Dgk--ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~ 245 (479)
T KOG0299|consen 209 AVSSDGK--YLATGGRDRHVQIWDCDTLEHVKVFKGHRG 245 (479)
T ss_pred EEcCCCc--EEEecCCCceEEEecCcccchhhccccccc
Confidence 0001111 234677788889999999999988765443
No 179
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=41.95 E-value=1.7e+02 Score=25.27 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeecCCC
Q 021797 175 LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTG 254 (307)
Q Consensus 175 lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G 254 (307)
.+-+++..|+++-+|+.++..+ |+-- .....-. +. ..+. .|++-. +.|.|-+|+..+|
T Consensus 175 ~v~~~~~~g~~~~~d~~tg~~~--w~~~-~~~~~~~--~~--------------~~~~--~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 175 RVYVSSGDGRVVAVDLATGEKL--WSKP-ISGIYSL--PS--------------VDGG--TLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEEECCTSSEEEEETTTTEEE--EEEC-SS-ECEC--EE--------------CCCT--EEEEEE-TTTEEEEEETTTT
T ss_pred EEEEEcCCCeEEEEECCCCCEE--EEec-CCCccCC--ce--------------eeCC--EEEEEe-CCCEEEEEECCCC
Confidence 6666777788777799999944 6322 1111100 00 0111 344444 7999999999999
Q ss_pred CeEE
Q 021797 255 PRLL 258 (307)
Q Consensus 255 ~RV~ 258 (307)
+.+-
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8763
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=40.62 E-value=23 Score=37.05 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=52.0
Q ss_pred ECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEE
Q 021797 169 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 248 (307)
Q Consensus 169 lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEV 248 (307)
--|...|++..-..|+|.+||=.++.+||..||=|. =+.+.++ ++.+=+.--..-..-|+|
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----VVNCLEp---------------HP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----VVNCLEP---------------HPHLPVLASSGIDHDVKI 462 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccc----eEeccCC---------------CCCCchhhccCCccceee
Confidence 357788999989999999999999999999999998 3333322 232223334455777999
Q ss_pred eecCCCCeEE
Q 021797 249 WQMRTGPRLL 258 (307)
Q Consensus 249 W~~~~G~RV~ 258 (307)
|+-.+-.|..
T Consensus 463 WTP~~~er~~ 472 (559)
T KOG1334|consen 463 WTPLTAERAT 472 (559)
T ss_pred ecCCcccccc
Confidence 9987666554
No 181
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=39.93 E-value=62 Score=34.41 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=57.7
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
-+..++.||||++.|+.--.|-.=++|-.+..++-+.|.|=-+- +-+.=..| +| ++.-...
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL---LCvcWSPD----------GK------yIvtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL---LCVCWSPD----------GK------YIVTGGE 352 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce---EEEEEcCC----------cc------EEEecCC
Confidence 67889999999999998888888888888889999999997643 22221222 22 3445677
Q ss_pred CCeEEEeecCCCCeEEEE
Q 021797 243 KGIIEVWQMRTGPRLLTI 260 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~ 260 (307)
+-+|-||++. -.||.|.
T Consensus 353 DDLVtVwSf~-erRVVAR 369 (636)
T KOG2394|consen 353 DDLVTVWSFE-ERRVVAR 369 (636)
T ss_pred cceEEEEEec-cceEEEe
Confidence 9999999996 4566555
No 182
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=39.45 E-value=22 Score=42.55 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=57.0
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 242 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyapr 242 (307)
..+.|+-.|..++....-.-|-|.|+|+...+.++-|+. |. . .. ...-.+.
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~-------------------~~--~f~~~ss 2388 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-T-------------------RE--YFVTGSS 2388 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-h-------------------hh--eeeccCc
Confidence 467888899999999999999999999999999999987 22 0 11 3367888
Q ss_pred CCeEEEeecCCCCeEEEEE
Q 021797 243 KGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 243 Rg~lEVW~~~~G~RV~a~~ 261 (307)
||.+.||++-.-..+.+|.
T Consensus 2389 ~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ccceEEEEccccchhhcCc
Confidence 9999999998776666654
No 183
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=20 Score=38.35 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=43.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccc
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD 217 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~ 217 (307)
...|++.|.|++.|+.=+-|-|..+|..+|.+|.-| |--+|.-++.-.+.|
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw---rpmecdllqlaapsd 929 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW---RPMECDLLQLAAPSD 929 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC---CcccchhhhhcCchh
Confidence 457889999999999999999999999999999988 677888887765554
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=39.02 E-value=1.5e+02 Score=30.55 Aligned_cols=102 Identities=20% Similarity=0.335 Sum_probs=59.0
Q ss_pred CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccc-eee--EEEEEecccccccccccCCCCC
Q 021797 154 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA-SCV--FMEMLVNKDAATSSAYYAPVKS 230 (307)
Q Consensus 154 l~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDA-qc~--Wi~~~~~~~~~~~~~~~~~~k~ 230 (307)
+..|.-+.|....|--+|+|.+.|..+.-|-|+|+=... ++..-.-+.| +.. |+........ ...+....--+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~---~~~~~~d~e~~~~ke~w~v~k~lr~h-~~diydL~Ws~ 133 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD---VRIFDADTEADLNKEKWVVKKVLRGH-RDDIYDLAWSP 133 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC---cCCccccchhhhCccceEEEEEeccc-ccchhhhhccC
Confidence 345888899999999999999999999999999987664 2221000000 001 3322111000 00000000001
Q ss_pred CcceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 231 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 231 ~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
+ .+ ++|.+.-++.+-+|++..|..++...
T Consensus 134 d-~~-~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 134 D-SN-FLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred C-Cc-eeeeeeccceEEEEEeccceeEeecc
Confidence 2 22 45666678999999999888877654
No 185
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=1.1e+02 Score=32.00 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=39.0
Q ss_pred CceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccc
Q 021797 161 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY 202 (307)
Q Consensus 161 ~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGy 202 (307)
.-...++.-+|+|+++|+.=..|.|.|+|..+-.-+|..+|.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 667899999999999999999999999999999999999884
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=36.87 E-value=82 Score=31.95 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=47.2
Q ss_pred ccccCCCceeeEEEECCCCCEEEEEcCCCcEE-EEEcCCceeEEee-cccccceeeEEEEE
Q 021797 155 TCLKDHPRKGERLTLSPSGSLAAITDSLGRIL-LLDTQALVVVRLW-KGYRDASCVFMEML 213 (307)
Q Consensus 155 ~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~-LiD~~~~~ivRmW-KGyRDAqc~Wi~~~ 213 (307)
..+.-++-....|+.+|+|++.|++-.-|+|| ++++..|.-+.-+ +|++=++..=+-..
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 34666777889999999999999998889887 7899999988866 58886666555443
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=36.29 E-value=70 Score=34.52 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=38.5
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW 199 (307)
+.-++-...+|+++|.|.|+|..-..|-|=++.+++|..||.|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE
Confidence 4556667889999999999999999999999999999999976
No 188
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.03 E-value=1.3e+02 Score=32.90 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=55.7
Q ss_pred CceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEE
Q 021797 161 PRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 239 (307)
Q Consensus 161 ~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIy 239 (307)
.|+++.++-.|.. .-+.||-+.-||=++|.....+|.-+||+|.++=. .... ...-+| -+|.
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ---~~As--------fs~Dgk------~IVs 563 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ---ISAS--------FSSDGK------HIVS 563 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc---eeee--------EccCCC------EEEE
Confidence 3478889999854 45777888889999999999999999999985431 1110 001112 3577
Q ss_pred cCCCCeEEEeecCCCCe
Q 021797 240 APRKGIIEVWQMRTGPR 256 (307)
Q Consensus 240 aprRg~lEVW~~~~G~R 256 (307)
+..+.-|-||.++.-++
T Consensus 564 ~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSFNS 580 (712)
T ss_pred eecCceEEEEeCCCCcc
Confidence 77889999999855443
No 189
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=34.08 E-value=84 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.6
Q ss_pred CeEEEeecCCCCeEEEEEec
Q 021797 244 GIIEVWQMRTGPRLLTIQCA 263 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~ 263 (307)
-.|+||++.+|.|..+--+.
T Consensus 41 E~V~I~Nv~NG~Rf~TYvI~ 60 (111)
T cd06919 41 EKVLVVNVNNGARFETYVIP 60 (111)
T ss_pred CEEEEEECCCCcEEEEEEEE
Confidence 45789999999998765543
No 190
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=33.98 E-value=2.8e+02 Score=29.57 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=65.8
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCc--------EEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCC
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGR--------ILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV 228 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGR--------V~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~ 228 (307)
.-++.-.+..+.+.|+.-++|.--..|+ |-++|..++.-+.+.- .+|--+.=+-.. ..
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g-~f~~GV~~vaFs-k~------------ 165 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG-FFDRGVTCVAFS-KI------------ 165 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeec-cccccceeeeec-cc------------
Confidence 5556667889999999877776555554 7889988888888774 444222111110 10
Q ss_pred CCCcceEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEe
Q 021797 229 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 269 (307)
Q Consensus 229 k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll 269 (307)
....+.+++=-.+..+|-||+-|-+.+++-+.+...+.++
T Consensus 166 -~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~ 205 (626)
T KOG2106|consen 166 -NGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFL 205 (626)
T ss_pred -CCCceEEEecCCCccccchhhchhhhccCcceeccceEEE
Confidence 1125678888889999999999999888777755444433
No 191
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=33.95 E-value=2.7e+02 Score=28.14 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=68.7
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec-ccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 163 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK-GyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
-+..+--||+|++-++..-.|-|=|||=..+..||-++ .+-.+++.=.....+ +| .+.-..
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn------------~k------yiLsSG 324 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN------------GK------YILSSG 324 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC------------Ce------EEeecC
Confidence 35666678888888888888888888877777666543 333333322222111 22 567788
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCeEEeccCcccccccCCCC---Ccc--cEEEEEeCCCCceEEE
Q 021797 242 RKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSP---YVP--LEVFLLNGDSGQLSVL 302 (307)
Q Consensus 242 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~~~~~~---~~~--~~~~ll~~~~g~l~~i 302 (307)
.+.++.+|.+-+|+.+-..+ +.+..|--...+ |+- .-|+|.|.-+++|-.-
T Consensus 325 ~DS~vkLWEi~t~R~l~~Yt----------GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYT----------GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred CcceeeeeeecCCceEEEEe----------cCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 99999999999998876544 333333211111 332 5566777766666443
No 192
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=92 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=38.6
Q ss_pred eEEEECCCCCEEEEEc-CCCcEEEEEcCCceeEE------eecccccceeeE
Q 021797 165 ERLTLSPSGSLAAITD-SLGRILLLDTQALVVVR------LWKGYRDASCVF 209 (307)
Q Consensus 165 ~~I~lsP~~~lAavtD-slGRV~LiD~~~~~ivR------mWKGyRDAqc~W 209 (307)
..+.++|+|..+.++| .-++|.++|..+-.++| +=.|.+.+...+
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 7899999999888876 89999999999999997 666777776666
No 193
>PRK04043 tolB translocation protein TolB; Provisional
Probab=33.30 E-value=3.2e+02 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=30.9
Q ss_pred EEECCCCCEEEEEcCC---------CcEEEEEcCCceeEEeecccccceeeE
Q 021797 167 LTLSPSGSLAAITDSL---------GRILLLDTQALVVVRLWKGYRDASCVF 209 (307)
Q Consensus 167 I~lsP~~~lAavtDsl---------GRV~LiD~~~~~ivRmWKGyRDAqc~W 209 (307)
...||+|+++|.+-.- .+|.++|+.++..-++-.+..+....|
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~ 375 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRF 375 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEE
Confidence 4789999877765322 489999999998877777655544443
No 194
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=32.95 E-value=57 Score=33.58 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=56.4
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
+.-+.--+..+..|++|+|+...|..|-|=.++.. ...|.|.+++-++++-=+-... +| .| |
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSp-nD----------sk-----F- 195 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSP-ND----------SK-----F- 195 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCC-CC----------ce-----e-
Confidence 55555667788999999999999999999999874 5667788777765544333211 11 11 3
Q ss_pred EEEcCCCCeEEEeecCCC
Q 021797 237 AIHAPRKGIIEVWQMRTG 254 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G 254 (307)
.-+.-+|+|+||+....
T Consensus 196 -~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 196 -LTCSDDGTIKIWDFRMP 212 (464)
T ss_pred -EEecCCCeEEEEeccCC
Confidence 45677999999998743
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.69 E-value=3.9e+02 Score=26.87 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=45.2
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEE-EEEcCCceeEEe-ecccccceeeEEEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRIL-LLDTQALVVVRL-WKGYRDASCVFMEM 212 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~-LiD~~~~~ivRm-WKGyRDAqc~Wi~~ 212 (307)
++-+.-.+..++|.=+|.++|++..-|-++ ++|+.+|..+.- =.|+-.|.+.=|..
T Consensus 177 I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 177 INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 555667789999999999999999999876 889999998874 45777777766654
No 196
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.30 E-value=81 Score=35.21 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=36.7
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEE
Q 021797 167 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEML 213 (307)
Q Consensus 167 I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~ 213 (307)
=|.||++..+|+.++.|||..+|- +-..+|=||.|-.-++.++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~ 74 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL 74 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc
Confidence 367889999999999999999874 4456699999988766666543
No 197
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=31.51 E-value=1.3e+02 Score=19.61 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=23.0
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEE
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLL 188 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~Li 188 (307)
+.|.........-++.|++...+|..|++.-+
T Consensus 10 ~~~p~G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 10 STDADGTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred EECCCCCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 55666667777777788888888888876543
No 198
>PF14408 Actino_peptide: Ribosomally synthesized peptide in actinomycetes
Probab=31.50 E-value=56 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEECCCCCEEEEEcCCCcEEE
Q 021797 166 RLTLSPSGSLAAITDSLGRILL 187 (307)
Q Consensus 166 ~I~lsP~~~lAavtDslGRV~L 187 (307)
++.++|.-++++..|+.|+|+.
T Consensus 5 ~~~lDP~TQ~~v~~D~~G~~ve 26 (59)
T PF14408_consen 5 RVVLDPDTQTGVYVDRDGPVVE 26 (59)
T ss_pred eeeECCCceeeEEEcCCCCcee
Confidence 5679999999999999998754
No 199
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=31.11 E-value=2.2e+02 Score=28.02 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=56.5
Q ss_pred cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee-cccccceeeEEEEEecccccccccccCCCCCCcceEE
Q 021797 158 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 236 (307)
Q Consensus 158 ~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW-KGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 236 (307)
.|.+-.+++-.|.|+....++.-..+.+.-+|-.+|.=+-.+ ||+-.+ +.+. +.+ ++.- +
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp------VhcV--------rFS---PdGE--~ 281 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP------VHCV--------RFS---PDGE--L 281 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc------eEEE--------EEC---CCCc--e
Confidence 456778899999999999999999999999999999988775 776542 1111 011 1121 2
Q ss_pred EEEcCCCCeEEEeecCCCC
Q 021797 237 AIHAPRKGIIEVWQMRTGP 255 (307)
Q Consensus 237 VIyaprRg~lEVW~~~~G~ 255 (307)
.-....+|.|.+|.+--|+
T Consensus 282 yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeccCCCceEEEEEecCCC
Confidence 2445678999999997554
No 200
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=30.93 E-value=93 Score=30.39 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEE
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 197 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivR 197 (307)
...+....+.+ .|+.+.++|.-||.+|+|+.+..+..
T Consensus 64 ~~~~~~~F~al--~gskIv~~d~~~~t~vyDt~t~av~~ 100 (342)
T PF07893_consen 64 RGPWSMDFFAL--HGSKIVAVDQSGRTLVYDTDTRAVAT 100 (342)
T ss_pred CCCceeEEEEe--cCCeEEEEcCCCCeEEEECCCCeEec
Confidence 44555666666 88999999999999999999998884
No 201
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=30.38 E-value=1.3e+02 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=32.4
Q ss_pred CeEEEeecCCCCeEEEEEe--cCCeEEeccC----------ccc--ccc--cC--CCCCcccEEEEEeCCCCceEEE
Q 021797 244 GIIEVWQMRTGPRLLTIQC--AKGSKILQPT----------YRF--GSS--MA--SSPYVPLEVFLLNGDSGQLSVL 302 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v--~~~~~Ll~~~----------~~~--~~~--~~--~~~~~~~~~~ll~~~~g~l~~i 302 (307)
-.|+||++.+|.|..+--+ .+|+..+.-+ -.+ ++- .. +-.-+.-.++++|+.+ .+.++
T Consensus 42 E~V~V~Nv~NG~Rf~TYvI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~~~~~~e~~~~~P~vv~vd~~N-~i~~~ 117 (126)
T PRK05449 42 EKVQIVNVNNGARFETYVIAGERGSGVICLNGAAARLVQVGDLVIIAAYAQMDEEEAKTHKPKVVFVDEDN-RIKET 117 (126)
T ss_pred CEEEEEECCCCcEEEEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECccCCHHHHhcCCCEEEEECCCC-CEEEE
Confidence 4578999999999866554 4444443332 221 110 00 1113446899999954 45544
No 202
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=30.25 E-value=88 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCceeEEe
Q 021797 171 PSGSLAAITDSLGRILLLDTQALVVVRL 198 (307)
Q Consensus 171 P~~~lAavtDslGRV~LiD~~~~~ivRm 198 (307)
+.-.+.+..|..|||+.+|..+..+.|+
T Consensus 79 ~~~~~vvl~~~~G~Vy~yd~~~~~l~~l 106 (125)
T PF02393_consen 79 FRDRLVVLVGESGRVYAYDPEDDRLYRL 106 (125)
T ss_pred ccceEEEEEeCCCeEEEEEcCCCEEEEE
Confidence 4567888899999999999999887765
No 203
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=30.19 E-value=53 Score=23.81 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=19.0
Q ss_pred ccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceeEEe
Q 021797 157 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRL 198 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~-~lAavtDslGRV~LiD~~~~~ivRm 198 (307)
+.|-++.. |--=|.| +|.-+- |..+|+|+.+|.|+.+
T Consensus 15 V~D~~~~~--L~~Pp~G~~Wvrv~---~dyvLv~~~tG~I~~V 52 (52)
T PF11776_consen 15 VDDWRRYG--LPAPPRGYHWVRVG---GDYVLVAIATGIIASV 52 (52)
T ss_dssp E---TTSS-------TTEEEEE-S---SEEEEEETTT-BEEEE
T ss_pred ECCHHHCC--CCcCCCCCEeEEEC---CeEEEEEcCCCeEEeC
Confidence 44544444 3333444 555443 8899999999999875
No 204
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.10 E-value=1e+02 Score=19.11 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=13.6
Q ss_pred EEcCCCcEEEEEcCCceeE
Q 021797 178 ITDSLGRILLLDTQALVVV 196 (307)
Q Consensus 178 vtDslGRV~LiD~~~~~iv 196 (307)
+.|+.|+|++-|..+..|.
T Consensus 8 av~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEETTSEEEEEECCCTEEE
T ss_pred EEeCCCCEEEEECCCCEEE
Confidence 4457888888887776654
No 205
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=27.72 E-value=4.2e+02 Score=26.62 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=39.6
Q ss_pred EEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEE-ec
Q 021797 185 ILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ-CA 263 (307)
Q Consensus 185 V~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~-v~ 263 (307)
|-++|+.++..|+-|+.=.. .-=|++..+ .| + .|+.-..-.|.|.||+..+|..+..+. ++
T Consensus 271 VWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd------------~~--P--~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLEHP--IDSIAVSQD------------DK--P--LLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEEETTTTEEEEEEEEEEE--ESEEEEESS------------SS-----EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EEEEECCCCeEEEEEeCCCc--cceEEEccC------------CC--c--EEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 77889999999998864222 112444322 12 2 344445567999999999999998886 44
Q ss_pred CCeEEe
Q 021797 264 KGSKIL 269 (307)
Q Consensus 264 ~~~~Ll 269 (307)
....|+
T Consensus 333 ~~~~l~ 338 (342)
T PF06433_consen 333 ETPTLI 338 (342)
T ss_dssp SS--EE
T ss_pred CCceEE
Confidence 444443
No 206
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=27.45 E-value=4.3e+02 Score=30.11 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=46.3
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEee----cccccceeeEEEEEecccccccccccCCCCCCcceEEEEEc
Q 021797 165 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW----KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 240 (307)
Q Consensus 165 ~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmW----KGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIya 240 (307)
..|+++|+|++.++--.-+||.+||..++.+..+- .||.|-. .....- +....+. ...+.. |.|--
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~----~~~a~l-~~P~GIa---vd~dG~--lyVaD 876 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK----ALKAQL-SEPAGLA---LGENGR--LFVAD 876 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc----cccccc-CCceEEE---EeCCCC--EEEEE
Confidence 47888999986655555689999999988877654 2343310 000000 0000000 001122 34556
Q ss_pred CCCCeEEEeecCCCCe
Q 021797 241 PRKGIIEVWQMRTGPR 256 (307)
Q Consensus 241 prRg~lEVW~~~~G~R 256 (307)
-..+.|.+|++.++.-
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 6778999999988753
No 207
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=27.34 E-value=1.1e+02 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=18.2
Q ss_pred CeEEEeecCCCCeEEEEEe--cCCeEEec
Q 021797 244 GIIEVWQMRTGPRLLTIQC--AKGSKILQ 270 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v--~~~~~Ll~ 270 (307)
--|+||+..+|.|..+--+ .+|++.+.
T Consensus 41 EkV~I~N~nNGaRf~TYvI~g~rGSg~I~ 69 (126)
T COG0853 41 EKVDIVNVNNGARFSTYVIAGERGSGVIC 69 (126)
T ss_pred ceEEEEECCCCcEEEEEEEEccCCCcEEE
Confidence 3578999999999866543 34444443
No 208
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=27.09 E-value=5.9e+02 Score=27.25 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=34.2
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCCeE-EeccCcccccccCCCCCcccEEEEEeCCCCceEEEecc
Q 021797 236 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSK-ILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRS 305 (307)
Q Consensus 236 LVIyaprRg~lEVW~~~~G~RV~a~~v~~~~~-Ll~~~~~~~~~~~~~~~~~~~~~ll~~~~g~l~~in~~ 305 (307)
|.||--+-|.+|.-.-. --+|.++.+.++++ ++-++++ .|..++|-++|.+++|-++
T Consensus 384 l~iyd~~~~e~kr~e~~-lg~I~av~vs~dGK~~vvaNdr------------~el~vididngnv~~idkS 441 (668)
T COG4946 384 LGIYDKDGGEVKRIEKD-LGNIEAVKVSPDGKKVVVANDR------------FELWVIDIDNGNVRLIDKS 441 (668)
T ss_pred EEEEecCCceEEEeeCC-ccceEEEEEcCCCcEEEEEcCc------------eEEEEEEecCCCeeEeccc
Confidence 44444444444444332 23678888888766 4444433 4677788888888887653
No 209
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.79 E-value=3.3e+02 Score=29.90 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred ceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcceEEEEEcC
Q 021797 162 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 241 (307)
Q Consensus 162 R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LVIyap 241 (307)
-+..+|.+-|..-|+.++=--|+|-++|..+-.+||-+ ++.+..-+. ..--.+| --++-..
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-----------eV~~~PvRa---~kfiaRk-----nWiv~Gs 74 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-----------EVSEVPVRA---AKFIARK-----NWIVTGS 74 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-----------eecccchhh---heeeecc-----ceEEEec
Confidence 35678999999999999999999999999999999865 443321110 0011122 1345566
Q ss_pred CCCeEEEeecCCCCeEEEEEecCC
Q 021797 242 RKGIIEVWQMRTGPRLLTIQCAKG 265 (307)
Q Consensus 242 rRg~lEVW~~~~G~RV~a~~v~~~ 265 (307)
-++-|.|++..++.||..|+.-..
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred CCceEEEEecccceeeEEeecccc
Confidence 688999999999999999997654
No 210
>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=93 Score=28.39 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=27.4
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCc
Q 021797 164 GERLTLSPSGSLAAITDSLGRILLLDTQAL 193 (307)
Q Consensus 164 ~~~I~lsP~~~lAavtDslGRV~LiD~~~~ 193 (307)
+.+|..|||+.++-++|.-|+|+++-.+.-
T Consensus 81 i~hIraS~NNTivtVtd~kg~vi~~~Scgt 110 (190)
T KOG0408|consen 81 IIHIRASFNNTIVTVTDVKGEVISWSSCGT 110 (190)
T ss_pred eEEEEecCCCeEEEEEccCCcEEEEeeccc
Confidence 789999999999999999999999877664
No 211
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=25.97 E-value=1.1e+02 Score=20.09 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=16.1
Q ss_pred EcCCCcEEEEEcCCceeE
Q 021797 179 TDSLGRILLLDTQALVVV 196 (307)
Q Consensus 179 tDslGRV~LiD~~~~~iv 196 (307)
....|+|.-+|..+|.++
T Consensus 6 ~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 6 GTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp ETTTSEEEEEETTTTSEE
T ss_pred eCCCCEEEEEECCCCCEE
Confidence 388899999999999986
No 212
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.83 E-value=88 Score=35.25 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=43.6
Q ss_pred ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccccc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 204 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRD 204 (307)
|--+.-.+..++=+|++.|.|..-...+|+++|..+...+++.+|+-.
T Consensus 125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 555777889999999999999999999999999999999999998865
No 213
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=25.80 E-value=6.3e+02 Score=24.61 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=70.8
Q ss_pred ccCCCceeeEEEECC-C-CCEEEE-EcCCCcEEEEEcCCceeEEeecccccceeeEEEEEecccccccccccCCCCCCcc
Q 021797 157 LKDHPRKGERLTLSP-S-GSLAAI-TDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 233 (307)
Q Consensus 157 l~D~~R~~~~I~lsP-~-~~lAav-tDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 233 (307)
..|+.-+-...-=+| + |.+.|. .-..-.|++-|..+|+-++-..|+-.--.+-.. .+ .+
T Consensus 134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys----wn--------------~~ 195 (350)
T KOG0641|consen 134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS----WN--------------GA 195 (350)
T ss_pred ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE----ec--------------Cc
Confidence 344443333333345 2 344444 344557999999999998888887663222111 00 01
Q ss_pred eEEEEEcCCCCeEEEeecCC--------------C---CeEEEEEecCCeEEeccCccccc--------ccCCCCCcc--
Q 021797 234 LCLAIHAPRKGIIEVWQMRT--------------G---PRLLTIQCAKGSKILQPTYRFGS--------SMASSPYVP-- 286 (307)
Q Consensus 234 l~LVIyaprRg~lEVW~~~~--------------G---~RV~a~~v~~~~~Ll~~~~~~~~--------~~~~~~~~~-- 286 (307)
.+.....+-.|..|++|- | .-|+++-|.+.+|||-.++.=-+ ++.-++|+|
T Consensus 196 --m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 196 --MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred --EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 224556677888888874 3 56788889999999987765333 222445666
Q ss_pred --cEEEEEeC
Q 021797 287 --LEVFLLNG 294 (307)
Q Consensus 287 --~~~~ll~~ 294 (307)
-+|+=+.|
T Consensus 274 adir~vrfsp 283 (350)
T KOG0641|consen 274 ADIRCVRFSP 283 (350)
T ss_pred cceeEEEeCC
Confidence 36666666
No 214
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=25.57 E-value=1.9e+02 Score=25.16 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=33.1
Q ss_pred CeEEEeecCCCCeEEEEEec--CCeEEec----------cCccc--ccc--cC--CCCCcccEEEEEeCCCCceEEE
Q 021797 244 GIIEVWQMRTGPRLLTIQCA--KGSKILQ----------PTYRF--GSS--MA--SSPYVPLEVFLLNGDSGQLSVL 302 (307)
Q Consensus 244 g~lEVW~~~~G~RV~a~~v~--~~~~Ll~----------~~~~~--~~~--~~--~~~~~~~~~~ll~~~~g~l~~i 302 (307)
-.|+||++.+|.|.-+--+. +|+..++ ++-.+ ++- .. .-.-+...++|+|.. ..+.++
T Consensus 42 E~V~V~Nv~NG~Rf~TYvI~G~~GSg~I~lNGAAArl~~~GD~VII~sy~~~~~~e~~~~~P~vv~vd~~-N~i~~~ 117 (126)
T TIGR00223 42 EKVDIVNVNNGKRFSTYAIAGKRGSRIICVNGAAARCVSVGDIVIIASYVTMPDEEARTHRPNVAYFEGD-NEIKRT 117 (126)
T ss_pred CEEEEEECCCCcEEEEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECCcCCHHHHhcCCCEEEEECCC-CCEEEe
Confidence 45789999999999765543 4443333 33221 110 01 112345689999985 556654
No 215
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=25.13 E-value=1.2e+02 Score=28.58 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceeEEee
Q 021797 160 HPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLW 199 (307)
Q Consensus 160 ~~R~~~~I~lsP-~~~lAavtDslGRV~LiD~~~~~ivRmW 199 (307)
..+....|+.+| +|.|.+.+|--.+|+.+| ..|.++.++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 455678999999 789999999999999999 778887744
No 216
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=24.28 E-value=2.1e+02 Score=29.99 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred eeeEEEECCCCCEEEEEcCCCcE-----------------------EEEEcCCceeEEeecccccceeeEEEE
Q 021797 163 KGERLTLSPSGSLAAITDSLGRI-----------------------LLLDTQALVVVRLWKGYRDASCVFMEM 212 (307)
Q Consensus 163 ~~~~I~lsP~~~lAavtDslGRV-----------------------~LiD~~~~~ivRmWKGyRDAqc~Wi~~ 212 (307)
.-..|+++|+|+|..++|.-+.. ...|..++.+-|..-|.++|++.=+..
T Consensus 437 sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~f 509 (524)
T PF05787_consen 437 SPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCF 509 (524)
T ss_pred CCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceE
Confidence 34578999999999999987753 223556666777777777766554433
No 217
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=24.08 E-value=83 Score=31.64 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=74.6
Q ss_pred CC-ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceee----EEEEEe----cccc-----
Q 021797 153 PL-TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV----FMEMLV----NKDA----- 218 (307)
Q Consensus 153 pl-~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~----Wi~~~~----~~~~----- 218 (307)
|+ ..|+|+--++..+..-|..+..+.....+-|=|+|...-.+=|-+|=+-|++.- |...-+ .++.
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 44 669999999999999999999999999999999999999999999988887532 221100 0010
Q ss_pred ---c---------cc--------ccccCCCCCCcceEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 021797 219 ---A---------TS--------SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 261 (307)
Q Consensus 219 ---~---------~~--------~~~~~~~k~~~~l~LVIyaprRg~lEVW~~~~G~RV~a~~ 261 (307)
+ .+ +.++++. . -|-|-+.++|.|++|+=-.+++|-+|.
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t---~--~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSST---G--SLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCC---c--cEEEEeccCCcEEeeccccHHHHHHHH
Confidence 0 01 1122221 1 255889999999999977777766665
No 218
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.71 E-value=4e+02 Score=28.57 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=46.4
Q ss_pred cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeecccccceeeEEEEEeccccccc--ccccCCCCCCcc
Q 021797 156 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS--SAYYAPVKSDYC 233 (307)
Q Consensus 156 ~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRDAqc~Wi~~~~~~~~~~~--~~~~~~~k~~~~ 233 (307)
.|.|++-.+..+.-.=+..|+|..-.-|.|+|..+.++.=---+|= +++-+ -.++++.| +
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~---------------~sgqsvRll~ys~sk--r- 177 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI---------------DSGQSVRLLRYSPSK--R- 177 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---------------CCCCeEEEeeccccc--c-
Confidence 4778775555444444345666655579999999887643222210 00000 01233444 2
Q ss_pred eEEEEEcCCCCeEEEeecCC
Q 021797 234 LCLAIHAPRKGIIEVWQMRT 253 (307)
Q Consensus 234 l~LVIyaprRg~lEVW~~~~ 253 (307)
||..-|.-+|+|-+||++.
T Consensus 178 -~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 178 -FLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred -eeeEeeccCCeEEEEeccC
Confidence 5667788899999999974
No 219
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.50 E-value=1.3e+02 Score=31.85 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.4
Q ss_pred CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCCceeEEeeccccc
Q 021797 159 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 204 (307)
Q Consensus 159 D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWKGyRD 204 (307)
..+-...+||++|+|+..+++ -+-|.++|+.++.+++-+-|+-.
T Consensus 142 ~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred cCCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCc
Confidence 334456789999998776664 36799999999999999999865
No 220
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.87 E-value=1.5e+02 Score=18.00 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=16.5
Q ss_pred EEEEcCCCcEEEEEcCCceeE
Q 021797 176 AAITDSLGRILLLDTQALVVV 196 (307)
Q Consensus 176 AavtDslGRV~LiD~~~~~iv 196 (307)
+.+++..|++.-+|..+|.++
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEE
Confidence 344556699999999999876
No 221
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=21.75 E-value=70 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=18.6
Q ss_pred cEEEEEcCCceeEEeecccccce
Q 021797 184 RILLLDTQALVVVRLWKGYRDAS 206 (307)
Q Consensus 184 RV~LiD~~~~~ivRmWKGyRDAq 206 (307)
.|.++|+.++. +..|.+.|+|.
T Consensus 2 ~V~~yd~~~~~-i~~F~Si~eAa 23 (37)
T PF07453_consen 2 PVYVYDLNTNE-IKSFDSIREAA 23 (37)
T ss_pred eEEEEECCCCe-EEEEcCHHHHH
Confidence 48899999999 68999888874
No 222
>PRK13616 lipoprotein LpqB; Provisional
Probab=21.61 E-value=1.9e+02 Score=30.79 Aligned_cols=49 Identities=29% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCceeeEEEECCCC-CEEEEEcCCCcEEE---EEcCCceeEEe------eccccc--ceeeEE
Q 021797 159 DHPRKGERLTLSPSG-SLAAITDSLGRILL---LDTQALVVVRL------WKGYRD--ASCVFM 210 (307)
Q Consensus 159 D~~R~~~~I~lsP~~-~lAavtDslGRV~L---iD~~~~~ivRm------WKGyRD--Aqc~Wi 210 (307)
+.++.+.++.+|||| ++|.+.+ |+|++ +....|. .|+ =.+..+ .+..|.
T Consensus 445 ~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 445 RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEe
No 223
>PRK01029 tolB translocation protein TolB; Provisional
Probab=21.41 E-value=2e+02 Score=28.79 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=32.9
Q ss_pred ccCCCceeeEEEECCCCCEEEEE-c--CCCcEEEEEcCCceeEEeecc
Q 021797 157 LKDHPRKGERLTLSPSGSLAAIT-D--SLGRILLLDTQALVVVRLWKG 201 (307)
Q Consensus 157 l~D~~R~~~~I~lsP~~~lAavt-D--slGRV~LiD~~~~~ivRmWKG 201 (307)
|.+..+.......+|||++++.+ + .-+.|.++|+..+...++-++
T Consensus 366 Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 366 LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 44444566788999999877653 2 345789999999988888764
No 224
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.41 E-value=1.6e+02 Score=28.68 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.3
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceeEEeec
Q 021797 167 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 200 (307)
Q Consensus 167 I~lsP~~~lAavtDslGRV~LiD~~~~~ivRmWK 200 (307)
.+++-.|.|-+++=|-|||.-+|..+|.++.-.|
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 4557789999999999999999999999998765
No 225
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=20.26 E-value=7.9e+02 Score=23.73 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=44.8
Q ss_pred EEEEEcCCC--CeEEEeecCCCCeEEEEEecCCeEEeccCcccccc----cCCCCCcccEEEEEeCCCCceEEEe
Q 021797 235 CLAIHAPRK--GIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSS----MASSPYVPLEVFLLNGDSGQLSVLN 303 (307)
Q Consensus 235 ~LVIyaprR--g~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~~~----~~~~~~~~~~~~ll~~~~g~l~~in 303 (307)
+||++.-+. ..|.|++...+.+...+..+..+.+.-.+..+.+. ..++...|..+|-+|..+|+++.+-
T Consensus 338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 344554444 56778888767788888877766544333334442 1255578899999999999998763
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=20.20 E-value=83 Score=30.91 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEc
Q 021797 152 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDT 190 (307)
Q Consensus 152 ~pl~~l~D~~R~~~~I~lsP~~~lAavtDslGRV~LiD~ 190 (307)
.||..|.-++-.+.+++-+|+..+.|.+--.+||.|+++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Done!