BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021798
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 199/241 (82%), Gaps = 1/241 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD + ++
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 G 264
G
Sbjct: 248 G 248
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 199/241 (82%), Gaps = 1/241 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD + ++
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 G 264
G
Sbjct: 248 G 248
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 199/241 (82%), Gaps = 1/241 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD + ++
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 G 264
G
Sbjct: 271 G 271
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/241 (74%), Positives = 198/241 (82%), Gaps = 1/241 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 28 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 87
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 88 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 147
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 148 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 206
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD + ++
Sbjct: 207 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 266
Query: 264 G 264
G
Sbjct: 267 G 267
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/241 (74%), Positives = 198/241 (82%), Gaps = 1/241 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD + ++
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 G 264
G
Sbjct: 271 G 271
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 11/226 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQGIAWAFGGMIFV 102
E K F+RA +AEF+AT LF++IS+ + +G V +N ++ ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK-VSLAFGLSIAT 62
Query: 103 LVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYG 162
L ISG H+NPAVTLGL L+ ++S+ RAL Y++ QC+GAI ++ G +
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGN 122
Query: 163 RLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAV 222
L G N +A G G GLG EIIGT LV V + TD +R RD + APL IG +V
Sbjct: 123 SL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSV 176
Query: 223 FLVHLATIPITGTGINPARSLGAAII-YNKDRGWDDHVLDFLGGTI 267
L HL I TG GINPARS G+A+I +N W V F+GG +
Sbjct: 177 ALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGAL 222
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 128/227 (56%), Gaps = 11/227 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIF 101
E K F+RA +AEF+A LF++IS+ + +G +KSN V ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
L ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI ++ G +
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA 221
L G N +A G G GLG EIIGT LV V + TD +R RD + PL IGF+
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFS 177
Query: 222 VFLVHLATIPITGTGINPARSLGAAII-YNKDRGWDDHVLDFLGGTI 267
V L HL I TG GINPARS G+++I +N W V F+G +
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAAL 224
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 122/217 (56%), Gaps = 10/217 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
TG +NPARS G A+I W++H + ++G I
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPII 217
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 10/217 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
TG +NPARS G A+I W++H + ++G I
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPII 217
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 10/217 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 166
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 167 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 222
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
TG +NPARS G A+I W++H + ++G I
Sbjct: 223 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPII 256
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +S+ + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTM 118
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ + L IGF+V + HL I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAI 174
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
TG +NPARS G A+I W++H + ++G I
Sbjct: 175 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPII 208
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 13/207 (6%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
E+ S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
+SGGHINPA+TL L + ++SL RA FY+ Q +GAI GAG++ G A R
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGN 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFL 224
N + + T+G + E+I TF L +F++TD++R++ P+ +P L IG +V L
Sbjct: 118 LAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTL 172
Query: 225 VHLATIPITGTGINPARSLGAAIIYNK 251
HL I TG +NPARS G A++ N+
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVMNR 199
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF A+ +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ YMV Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
N + G + G EI T V +F+ D +R+ R V L +GF++ L
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
HL + TG G+NPARS AI+ R + +H + ++G I
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVI 210
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
N + G + G EI T V +F+ D +R+ R V L +GF++ L
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
HL + TG G+NPARS AI+ R + +H + ++G I
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVI 210
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 14/220 (6%)
Query: 48 KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCT 107
+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAV 55
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG 167
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 56 GHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA-- 113
Query: 168 ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHL 227
N + G + G EI T V +F+ D +R+ R V L +GF++ L HL
Sbjct: 114 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHL 169
Query: 228 ATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
+ TG G+NPARS AI+ R + +H + ++G I
Sbjct: 170 FGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVI 206
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
SF+RA AEF AT +++ + + + + +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNT 114
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTI 267
TG G+NPARS AI+ R + +H + ++G I
Sbjct: 171 YYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVI 204
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 94 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 151
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+HL +IP+T T +NPARS AI GW L F
Sbjct: 152 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 208
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A L+HL +IP+T T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+HL +IP+T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+HL +IP+T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+HL +IP+T T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 26 QTQDGKDYVEPPPAPL----FEPGELKSWSF--------YRAGIAEFIATFLFLYISVLT 73
Q DG+ ++P AP ++P + W F + A EF+ TFLFL+ S
Sbjct: 7 QAADGQAEIKPEDAPYITNAYKPAYAR-WGFGSDSVRNHFIAMSGEFVGTFLFLW-SAFV 64
Query: 74 VMGVVKSNTKCSTVG-----IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK 128
+ + + G + I++ FG + V V+ T +SGG++NPAVTL L LAR
Sbjct: 65 IAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARA 124
Query: 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGT 188
+ R + Q I G A G +A AN + G ++ GL E GT
Sbjct: 125 IPPFRGILMAFTQ----IVAGMAAAGAASAMTPGEIA-FANALGGGASRTRGLFLEAFGT 179
Query: 189 FVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 247
+L TV K A AP IG A+ + HL I TG G+NPARS G A+
Sbjct: 180 AILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAV 233
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 47 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYC 106
+S+ R +AEF TF ++ + V + +G G+A AFG + + Y
Sbjct: 24 FQSYVMGRKLLAEFFGTFWLVFGGCGSA--VFAAAFPELGIGFTGVALAFGLTVLTMAYA 81
Query: 107 TAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLG-----------AICGAGVVKGF 155
GISGGH NPAV++GL +A + + + Y++ Q G A AG+ G
Sbjct: 82 VGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGG 141
Query: 156 MGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP 215
+ YG + G GY+ L EII T + + +T + A AP
Sbjct: 142 FASNGYGEHSPG------GYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAP 189
Query: 216 LPIGFAVFLVHLATIPITGTGINPARSLGAAI 247
+ IG A+ L+HL +IP+T T +NPARS G A+
Sbjct: 190 IAIGLALTLIHLISIPVTNTSVNPARSTGQAL 221
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+ L +IP+T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFL 263
A D P AP+ IG A+ L+ L +IP+T +NPARS AI GW L F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQLWFF 211
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 25/225 (11%)
Query: 57 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHIN 116
IAEF+ T L ++ V V + ++ G I+ FG + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAAL---KVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 117 PAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM---------------GAGQY 161
PAVT+ L+L + + ++V Q GA C A +V G G+ +
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 162 GRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGF 220
LAG + + + E++ T +L+ + + TD LAPL IG
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGL 185
Query: 221 AVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGG 265
+ ++ + P+TGT +NPAR G ++ GW + + F GG
Sbjct: 186 LIAVIGASMGPLTGTAMNPARDFGPK-VFAWLAGWGN--VAFTGG 227
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 57 IAEFIATFLFLY-----ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGIS 111
IAEF+ T L ++ ++ L V G + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM--------------- 156
G H+NPAVT+ L+L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 157 GAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP 215
G+ + LAG + + + E++ T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 216 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGG 265
L IG + ++ + P+TG +NPAR G ++ GW + + F GG
Sbjct: 181 LLIGLLIAVIGASMGPLTGFAMNPARDFGPK-VFAWLAGWGN--VAFTGG 227
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 22/231 (9%)
Query: 51 SFYRAGIAEFIATFLFLY-------ISVLTVMGVVKSN-------TKCSTVGIQGIAWAF 96
S + IAEFI TF+ ++ ++++ G N I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 97 GGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156
G I +Y ISG HINPAVT+GL+ +K + Y++ Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 157 GAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPL 216
G G GA G + + AE++GTF+L+ T+ +R+ + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 217 PIGFAVFLVHLATIPITGTGINPARSLGAAI---IYNKDRGWDDHVLDFLG 264
IG V + I+G+ +NPAR+ G + I+ W+ + + +G
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIG 228
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG- 109
S+++A +AE + TFL + +T+MG+ +G A G+ + T G
Sbjct: 142 SYWQAMLAEVVGTFLLM----ITIMGIAVDERAP-----KGFAGIIIGLTVAGIITTLGN 192
Query: 110 ISGGHINPAVTLGLFLARKLSLTRALF-YMVMQCLGAICGA 149
ISG +NPA T G +L + L+ Y + +G I GA
Sbjct: 193 ISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGA 233
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGV 151
I AF I ++Y ISG HINPAVT+ L+ + + Y+V Q +GA G+ +
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 152 VKGFMG--AGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSH 209
+G A G L A GY G + E IGTF+L+ + +R+
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGY--GQAILTEAIGTFLLMLVIMGVAVDERAP---- 172
Query: 210 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 244
P A L IG V + ITG+ +NPAR+ G
Sbjct: 173 -PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 24/222 (10%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG----IAWAFGGMIFVLVYCT 107
FY++ + EFI FL ++ + G + T G+ G + +G +F + +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEG---ATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG 167
A +SG H+N AV++GL K L + Y Q LGA G V G Y
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL-----YHGFISN 116
Query: 168 ANVVAHGYTKGDGLGAEIIGTFV--LVYTVFSATDAKRSARDS-----HVPILAPLPIGF 220
+ + + + G F L+ T ++ H+ L+ + +G
Sbjct: 117 SKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSV-VGL 175
Query: 221 AVFLVHLATIPITGTGINPARSLG----AAIIYNKDRGWDDH 258
+ + + TG +NP+R LG + I Y KD D+
Sbjct: 176 IILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,373,239
Number of Sequences: 62578
Number of extensions: 400083
Number of successful extensions: 1043
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 39
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)