Query 021798
Match_columns 307
No_of_seqs 202 out of 2007
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 6.7E-54 2.3E-58 394.9 16.0 243 30-273 38-280 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 3.3E-50 1.1E-54 372.5 19.9 215 47-271 46-260 (340)
3 1j4n_A Aquaporin 1; membrane p 100.0 2.6E-49 8.8E-54 360.3 23.5 218 45-271 3-224 (271)
4 3gd8_A Aquaporin-4; proton exc 100.0 1.7E-49 5.7E-54 352.1 18.5 213 51-273 2-214 (223)
5 2zz9_A Aquaporin-4; water tran 100.0 3.3E-49 1.1E-53 362.8 20.3 216 46-271 6-221 (301)
6 2b6o_A Aquaporin-0, lens fiber 100.0 3.5E-48 1.2E-52 351.4 24.1 212 46-271 3-214 (263)
7 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 3.4E-48 1.2E-52 351.7 18.2 212 46-271 5-217 (266)
8 2w2e_A AQY1, aquaporin, aquapo 100.0 1.5E-47 5.3E-52 349.4 20.3 210 50-271 42-255 (279)
9 3llq_A Aquaporin Z 2; aquapori 100.0 1.9E-48 6.4E-53 350.6 14.0 217 49-274 26-247 (256)
10 2o9g_A Aquaporin Z; integral m 100.0 5.3E-48 1.8E-52 345.0 14.4 212 52-272 4-222 (234)
11 1ldf_A Glycerol uptake facilit 100.0 8.5E-48 2.9E-52 352.4 14.7 214 51-271 6-246 (281)
12 3c02_A Aquaglyceroporin; membr 100.0 9E-48 3.1E-52 348.2 11.0 216 50-272 7-234 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 1.1E-46 3.6E-51 339.2 17.4 219 51-274 3-238 (246)
14 2f2b_A Aquaporin AQPM; protein 99.8 3.4E-19 1.2E-23 159.9 9.4 134 15-156 103-244 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.7 2.3E-16 7.8E-21 142.7 13.0 135 15-157 89-224 (263)
16 2o9g_A Aquaporin Z; integral m 99.7 1.4E-16 4.6E-21 141.9 9.7 133 15-156 87-230 (234)
17 2w2e_A AQY1, aquaporin, aquapo 99.7 2E-16 6.7E-21 144.1 10.9 132 15-156 133-264 (279)
18 3d9s_A Aquaporin-5, AQP-5; aqu 99.7 2.1E-16 7.3E-21 143.0 9.4 135 15-157 91-227 (266)
19 2zz9_A Aquaporin-4; water tran 99.7 3.6E-16 1.2E-20 143.4 10.8 135 15-157 96-231 (301)
20 3iyz_A Aquaporin-4; water tran 99.6 4.5E-16 1.5E-20 144.1 11.2 136 15-158 135-271 (340)
21 3llq_A Aquaporin Z 2; aquapori 99.6 2.7E-16 9.3E-21 141.2 8.9 133 15-156 112-253 (256)
22 1j4n_A Aquaporin 1; membrane p 99.6 5.5E-16 1.9E-20 140.7 9.5 135 15-157 99-234 (271)
23 3gd8_A Aquaporin-4; proton exc 99.6 4.6E-16 1.6E-20 137.5 8.7 134 15-156 87-221 (223)
24 3cn5_A Aquaporin; membrane pro 99.6 3.7E-16 1.3E-20 143.6 6.6 141 15-158 145-289 (304)
25 1ldf_A Glycerol uptake facilit 99.6 3.7E-15 1.3E-19 136.0 8.4 137 15-157 89-256 (281)
26 3c02_A Aquaglyceroporin; membr 99.5 4.9E-15 1.7E-19 133.7 6.8 137 15-156 91-242 (258)
27 3kcu_A Probable formate transp 68.4 55 0.0019 29.0 11.4 109 90-202 69-186 (285)
28 3s2u_A UDP-N-acetylglucosamine 47.5 2.8 9.6E-05 38.3 -1.0 21 108-128 9-29 (365)
29 3kly_A Putative formate transp 39.0 1.7E+02 0.0058 25.7 9.4 108 90-202 68-185 (280)
30 3tds_E Formate/nitrite transpo 34.0 1.8E+02 0.0063 25.3 8.7 108 90-199 65-178 (268)
31 4fc4_A Nitrite transporter NIR 23.3 2E+02 0.007 24.9 7.0 106 90-200 59-173 (261)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=6.7e-54 Score=394.85 Aligned_cols=243 Identities=73% Similarity=1.237 Sum_probs=195.7
Q ss_pred cccccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcC
Q 021798 30 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG 109 (307)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~ 109 (307)
.|++.+|++.+..+.+|.++++++|++++||+|||+|+|++++++++.....++....+.+.+++++|+++++.++++++
T Consensus 38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~ 117 (304)
T 3cn5_A 38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG 117 (304)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence 47788877777778888899999999999999999999999998776543333334556788999999999999999999
Q ss_pred CCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHH
Q 021798 110 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 189 (307)
Q Consensus 110 iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~ 189 (307)
+||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++ ++.++..+.+.+.+.++.+..++|+.|+++||
T Consensus 118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf 196 (304)
T 3cn5_A 118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTF 196 (304)
T ss_dssp TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 44455555555556667888899999999999
Q ss_pred HHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHH
Q 021798 190 VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRW 269 (307)
Q Consensus 190 iL~~~il~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga 269 (307)
+|+++|+.++|+++...++..+.+.|+.||+++++++++++++||++||||||||||++++++..|+++|+||+||++|+
T Consensus 197 iLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa 276 (304)
T 3cn5_A 197 VLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 276 (304)
T ss_dssp HHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHH
Confidence 99999999888766543222245899999999999999999999999999999999999654568999999999999999
Q ss_pred HHHH
Q 021798 270 SWTR 273 (307)
Q Consensus 270 ~l~~ 273 (307)
+++.
T Consensus 277 ~laa 280 (304)
T 3cn5_A 277 AVAA 280 (304)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=3.3e-50 Score=372.52 Aligned_cols=215 Identities=37% Similarity=0.585 Sum_probs=182.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHh
Q 021798 47 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLA 126 (307)
Q Consensus 47 ~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~ 126 (307)
..+.+++|++++||+|||+|+|++++++++.. ..++....+++.+++++|+++++.+++++++||||+|||||+++++.
T Consensus 46 ~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~ 124 (340)
T 3iyz_A 46 VWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT 124 (340)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc
Confidence 34457899999999999999999999887552 22222345678899999999999999999999999999999999999
Q ss_pred hcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccCC
Q 021798 127 RKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206 (307)
Q Consensus 127 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~~ 206 (307)
|+++|.+++.||++|++||++|+++++.++ ++... ...+.+.+.++.+..++|+.|+++||+|+++|+++.|+++...
T Consensus 125 G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~-~~~~~-~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~ 202 (340)
T 3iyz_A 125 RKISIAKSVFYITAQCLGAIIGAGILYLVT-PPSVV-GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV 202 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-chhhc-CceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCc
Confidence 999999999999999999999999999998 33221 1123344556778889999999999999999999988776432
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHH
Q 021798 207 DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSW 271 (307)
Q Consensus 207 ~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l 271 (307)
....|+.||+++.+.++.+++.||++||||||||||++.+ .|+++||||+||++|+++
T Consensus 203 ----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~WVywvgPiiGail 260 (340)
T 3iyz_A 203 ----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVL 260 (340)
T ss_pred ----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEeehhHHHHHHHHH
Confidence 2467999999998888888899999999999999999874 799999999999999966
No 3
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=2.6e-49 Score=360.34 Aligned_cols=218 Identities=40% Similarity=0.630 Sum_probs=183.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc----CCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHH
Q 021798 45 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS----NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120 (307)
Q Consensus 45 ~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavT 120 (307)
+|.++++++|++++||+||++|+|++++++.+.... .+.....+.+.+++++|+++++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 356677899999999999999999999987765421 1111223567889999999999999999999999999999
Q ss_pred HHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhcc
Q 021798 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD 200 (307)
Q Consensus 121 la~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~ 200 (307)
+++++.|+++|.+++.||++|++||++|+++++.++.... . ...+.+...++.+..++++.|+++|++|+++|+++.|
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d 160 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP-D-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD 160 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT-T-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-c-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999983221 1 1123344566778899999999999999999999988
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHH
Q 021798 201 AKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSW 271 (307)
Q Consensus 201 ~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l 271 (307)
+|+... ..+.|+.||+++.+.++.+++.||++|||||||||+++.+ .|+++|+||+||++|+++
T Consensus 161 ~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~wv~~vgP~~Ga~l 224 (271)
T 1j4n_A 161 RRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAAL 224 (271)
T ss_dssp SSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHH
T ss_pred ccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCcceeHHHHHHHHHHHH
Confidence 766432 3478999999998888887889999999999999999864 799999999999999976
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-49 Score=352.14 Aligned_cols=213 Identities=38% Similarity=0.604 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCc
Q 021798 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLS 130 (307)
Q Consensus 51 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~ 130 (307)
++||++++||+||++|++++++++++.. .+++....+.+.+++++|+++++.+++++++||+|+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~-~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTT-TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 4799999999999999999999887542 222333456788999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccCCCCCC
Q 021798 131 LTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHV 210 (307)
Q Consensus 131 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~~~~~~ 210 (307)
|++.+.|+++|++||++|+.+++.++ ++.... +.+.+.+.++.+..++++.|+++|++|+++|+.+.|+|++..
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~-~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~---- 154 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVT-PPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV---- 154 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCc----
Confidence 99999999999999999999999998 332211 223445566778889999999999999999999988776432
Q ss_pred CchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHHHH
Q 021798 211 PILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSWTR 273 (307)
Q Consensus 211 ~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l~~ 273 (307)
....|+.||+++...+..+++.||++||||||||||++.+ +|+++||||+||++|++++.
T Consensus 155 ~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~ 214 (223)
T 3gd8_A 155 TGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAG 214 (223)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHH
Confidence 2467999999998777777788999999999999999975 79999999999999997743
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=3.3e-49 Score=362.82 Aligned_cols=216 Identities=38% Similarity=0.581 Sum_probs=182.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH
Q 021798 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (307)
Q Consensus 46 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~ 125 (307)
+..+.+++|++++||+|||+|+|++++++++.... .+....+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus 6 ~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 84 (301)
T 2zz9_A 6 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC 84 (301)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHH
Confidence 34456899999999999999999999887654422 22234467788999999999999999999999999999999999
Q ss_pred hhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccC
Q 021798 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (307)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~ 205 (307)
.|+++|.+++.|+++|++||++|+++++.++++. .. ...+.+.+.++.+..++|+.|+++||+|+++|+++.|+++..
T Consensus 85 ~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~-~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~ 162 (301)
T 2zz9_A 85 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS-VV-GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 162 (301)
T ss_dssp TSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSC-GG-GTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc-CceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999998432 22 122344455667888999999999999999999998876642
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHH
Q 021798 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSW 271 (307)
Q Consensus 206 ~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l 271 (307)
. +.+.|+.||+++.+.++.+++.||++||||||||||++.+ .|+++|+||+||++|+++
T Consensus 163 ~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGail 221 (301)
T 2zz9_A 163 V----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVL 221 (301)
T ss_dssp C----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHH
T ss_pred c----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHH
Confidence 2 3478999999998888888889999999999999999974 799999999999999976
No 6
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=3.5e-48 Score=351.44 Aligned_cols=212 Identities=33% Similarity=0.500 Sum_probs=182.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH
Q 021798 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (307)
Q Consensus 46 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~ 125 (307)
|.++.+++|++++||+|||+|+++++++.... +....+.+.+++++|+++++.++.++++||+|+|||||+++++
T Consensus 3 e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-----~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~ 77 (263)
T 2b6o_A 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLV 77 (263)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHH
Confidence 55677899999999999999999999877532 1122356778999999999999999999999999999999999
Q ss_pred hhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccC
Q 021798 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (307)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~ 205 (307)
.|+++|.+.++|+++|++||++|+.+++.++++ .+.. ..+.+.+.++.+..++|+.|+++|++|+++|+.+.|+++..
T Consensus 78 ~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~-~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 155 (263)
T 2b6o_A 78 GSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155 (263)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc-cccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999943 2221 22334456677888999999999999999999998876542
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHH
Q 021798 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSW 271 (307)
Q Consensus 206 ~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l 271 (307)
. ..+.|+.||+++.+.++.++++||++||||||||||++.+ .|+++||||+||++|+++
T Consensus 156 ~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~l 214 (263)
T 2b6o_A 156 R----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGL 214 (263)
T ss_dssp S----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHH
T ss_pred C----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHH
Confidence 2 3478999999999999999999999999999999999874 899999999999999976
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-48 Score=351.70 Aligned_cols=212 Identities=35% Similarity=0.530 Sum_probs=181.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH
Q 021798 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (307)
Q Consensus 46 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~ 125 (307)
|.++.+++|++++||+|||+|+|++++++.+. ++ ...+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus 5 e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~--~~---~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~ 79 (266)
T 3d9s_A 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKW--PS---ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLV 79 (266)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCC--SS---SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC---CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHH
Confidence 44567889999999999999999999887531 11 12457788999999999999999999999999999999999
Q ss_pred hhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccC
Q 021798 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (307)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~ 205 (307)
.|+++|.+++.|+++|++||++|+++++.+++ +... ...+.+.+.++.+..++|+.|+++|++|+++|+.++|+++..
T Consensus 80 ~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~-~~~~-~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 157 (266)
T 3d9s_A 80 GNQISLLRAFFYVAAQLVGAIAGAGILYGVAP-LNAR-GNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157 (266)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHH-TTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccc-CceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999983 3221 122333445667788999999999999999999998876642
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCc-ceeeecchHHHHHH
Q 021798 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDD-HVLDFLGGTIRWSW 271 (307)
Q Consensus 206 ~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~-~wvy~vgP~~Ga~l 271 (307)
. ..+.|+.||+++.+.++.++++||++||||||||||++.+ .|++ +||||+||++|+++
T Consensus 158 ~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~l 217 (266)
T 3d9s_A 158 P----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVL 217 (266)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHH
T ss_pred c----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHH
Confidence 2 2478999999999999999999999999999999999975 7888 99999999999976
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1.5e-47 Score=349.35 Aligned_cols=210 Identities=31% Similarity=0.458 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--cccc--cCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH
Q 021798 50 WSFYRAGIAEFIATFLFLYISVLTVM--GVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (307)
Q Consensus 50 ~~~~r~~~aEf~gT~~lv~~~~~~~~--~~~~--~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~ 125 (307)
++.+|++++||+|||+|+|++++++. +... .+++....+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHH
Confidence 46789999999999999999988642 1111 1112223456788999999999999999999999999999999999
Q ss_pred hhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccC
Q 021798 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (307)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~ 205 (307)
.|+++|.+++.|+++|++||++|+++++.+++ +... ..+.+.++.+..++|+.|+++|++|+++|+.+.++++..
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~-~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~ 196 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTP-GEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRA 196 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-SSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCSTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 99999999999999999999999999999983 3221 123344466778999999999999999999987765531
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHH
Q 021798 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSW 271 (307)
Q Consensus 206 ~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l 271 (307)
+.+.|+.||++++++++.+++.||++||||||||||++++ ..|+++||||+||++|+++
T Consensus 197 -----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~l 255 (279)
T 2w2e_A 197 -----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFL 255 (279)
T ss_dssp -----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999974 3567899999999999976
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.9e-48 Score=350.61 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhc
Q 021798 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK 128 (307)
Q Consensus 49 ~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~ 128 (307)
..+++|++++||+|||+|++++++++......+ ....+++.+++++|+++++.+++++++||||+|||||+++++.|+
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 103 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcC
Confidence 345799999999999999999999865332221 224467889999999999999999999999999999999999999
Q ss_pred CccchhHHHHHhhhhhHHHHhHHHHhhccc-ccccccCC---CcceecC-CCCcCchhhHHHHHHHHHHHHHHHhccccc
Q 021798 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGA-GQYGRLAG---GANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203 (307)
Q Consensus 129 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~E~~~T~iL~~~il~~~~~~~ 203 (307)
++|.+.+.|+++|++||++|+++++.++.. ..++..+. +.....| ..+..++|+.|+++|++|+++|+.++|+++
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~ 183 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRV 183 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999998832 22332111 1111122 456788999999999999999999888654
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHHHHh
Q 021798 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSWTRS 274 (307)
Q Consensus 204 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l~~~ 274 (307)
. +.+.|+.||+++.++.+.+++.||++||||||||||++.+ +..|+++||||+||++|++++..
T Consensus 184 ~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~ 247 (256)
T 3llq_A 184 P------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAV 247 (256)
T ss_dssp C------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred C------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHH
Confidence 2 2478999999999999999999999999999999999984 33577999999999999977433
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=5.3e-48 Score=344.99 Aligned_cols=212 Identities=26% Similarity=0.400 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCcc
Q 021798 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSL 131 (307)
Q Consensus 52 ~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~ 131 (307)
++|++++||+||++|+|++++++..... .+....+.+.+++++|+++++.+++++++||+|+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~--~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAG--FPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT--CTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 6899999999999999999987642211 11223467889999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhHHHHhHHHHhhcccc-ccccc-----CCCcceecC-CCCcCchhhHHHHHHHHHHHHHHHhcccccc
Q 021798 132 TRALFYMVMQCLGAICGAGVVKGFMGAG-QYGRL-----AGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204 (307)
Q Consensus 132 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~-~~~~~-----~~~~~~~~~-~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~ 204 (307)
++.+.|+++|++||++|+.+++.++.+. +++.. ..+.....| +.+..++|+.|+++|++|+++|+.++|+|+.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 161 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999998432 23221 111111122 4677899999999999999999999885432
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcCCCCCCCcceeeecchHHHHHHH
Q 021798 205 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVLDFLGGTIRWSWT 272 (307)
Q Consensus 205 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~~~~wvy~vgP~~Ga~l~ 272 (307)
+.+.|+.||+++.+.++..+++||++||||||||||++++ +..|+++||||+||++|++++
T Consensus 162 ------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la 222 (234)
T 2o9g_A 162 ------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIG 222 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHH
Confidence 2479999999999999999999999999999999999984 345779999999999999763
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=8.5e-48 Score=352.36 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCc
Q 021798 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLS 130 (307)
Q Consensus 51 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~ 130 (307)
+++|++++||+|||+|+|++++++++...++. ..+.+.+++++|+++++.+++++++||||+|||||+++++.|+++
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 82 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFD 82 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCC
Confidence 47899999999999999999988765544321 234456899999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhhhHHHHhHHHHhhcccccccccC-----------------CCcceecCCCCcCchhhHHHHHHHHHHH
Q 021798 131 LTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA-----------------GGANVVAHGYTKGDGLGAEIIGTFVLVY 193 (307)
Q Consensus 131 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~E~~~T~iL~~ 193 (307)
|.+.+.|+++|++||++|+++++.+++ +.++..+ ...+.+.++.+..++|+.|+++|++|++
T Consensus 83 ~~~~~~Yi~AQ~lGA~~ga~l~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~ 161 (281)
T 1ldf_A 83 KRKVIPFIVSQVAGAFCAAALVYGLYY-NLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999983 3221110 0112233456788999999999999999
Q ss_pred HHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcC----CC------CCCCcceeeec
Q 021798 194 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN----KD------RGWDDHVLDFL 263 (307)
Q Consensus 194 ~il~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~----~~------~~~~~~wvy~v 263 (307)
+|+.+.|+|+... .+.+.|+.||+++.++++..++.||++||||||||||+++. ++ .+|.|+||||+
T Consensus 162 ~il~~~d~~~~~~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~v 238 (281)
T 1ldf_A 162 LILALTDDGNGVP---RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF 238 (281)
T ss_dssp HHHHHHCTTSSSC---CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHH
T ss_pred HHHHHhccCCCCc---ccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhH
Confidence 9999988766431 13589999999999999999999999999999999999861 11 12338999999
Q ss_pred chHHHHHH
Q 021798 264 GGTIRWSW 271 (307)
Q Consensus 264 gP~~Ga~l 271 (307)
||++|+++
T Consensus 239 gPi~Ga~l 246 (281)
T 1ldf_A 239 GPIVGAIV 246 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=9e-48 Score=348.20 Aligned_cols=216 Identities=20% Similarity=0.285 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcC
Q 021798 50 WSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKL 129 (307)
Q Consensus 50 ~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~ 129 (307)
++++|++++||+|||+|+|++++++.+...++. ..+.+.+++++|+++++.+++++++||+|+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~---~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGL---SGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---TTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 357899999999999999999987765432211 33577889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCC----CcceecCCCCcCchhhHHHHHHHHHHHHHHHhccccccC
Q 021798 130 SLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAG----GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (307)
Q Consensus 130 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~~~~ 205 (307)
+|++.+.|+++|++||++|+++++.++ ++.++..+. +......+.+..++++.|+++|++|+++|+.++|+|+..
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~-~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~ 162 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLY-HGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICG 162 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHT-HHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-chhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999999999999998 333332211 111122233444689999999999999999998877642
Q ss_pred CCCCCCchh-HHHHHHHHHHHHHHhhcCCcCccchhhhHHHHHHcC---CCCCC----CcceeeecchHHHHHHH
Q 021798 206 RDSHVPILA-PLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN---KDRGW----DDHVLDFLGGTIRWSWT 272 (307)
Q Consensus 206 ~~~~~~~~~-~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~----~~~wvy~vgP~~Ga~l~ 272 (307)
. .+.+. |+.||+++.+.++..++.||++||||||||||++++ ++..| +|+||||+||++|++++
T Consensus 163 ~---~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la 234 (258)
T 3c02_A 163 K---FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVF 234 (258)
T ss_dssp S---CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred c---ccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHH
Confidence 1 13577 999999999999999999999999999999999862 22344 67999999999999763
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=1.1e-46 Score=339.23 Aligned_cols=219 Identities=27% Similarity=0.373 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCC--------CC-----CccchhHHHHHHHHHHHHHHHHhcCCCCcccC
Q 021798 51 SFYRAGIAEFIATFLFLYISVLTVMGVV-KSNT--------KC-----STVGIQGIAWAFGGMIFVLVYCTAGISGGHIN 116 (307)
Q Consensus 51 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~-~~~~--------~~-----~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~N 116 (307)
+++|++++||+||++|+|++++++.+.. .+++ .. ...+++.+++++|+++++.+++++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4689999999999999999998776543 1111 01 11224558999999999999999999999999
Q ss_pred hHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCCCcceecCCCCcCchhhHHHHHHHHHHHHHH
Q 021798 117 PAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF 196 (307)
Q Consensus 117 PavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~iL~~~il 196 (307)
||||+++++.|+++|++.+.|+++|++||++|+.+++.+++++.......+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999994422221222233344567788999999999999999999
Q ss_pred HhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcCccchhhhHHHHH--Hc-CCCCCCCcceeeecchHHHHHHHH
Q 021798 197 SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI--IY-NKDRGWDDHVLDFLGGTIRWSWTR 273 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~~NPAr~~g~~l--~~-~~~~~~~~~wvy~vgP~~Ga~l~~ 273 (307)
...++++.. +.+.|+.+|+++.+.+++.++.||++|||||||||++ .. +++..|++.|+||++|++|++++.
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 876655432 2478999999999999999999999999999999999 33 456789999999999999997744
Q ss_pred h
Q 021798 274 S 274 (307)
Q Consensus 274 ~ 274 (307)
.
T Consensus 238 ~ 238 (246)
T 2f2b_A 238 L 238 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.78 E-value=3.4e-19 Score=159.93 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=103.2
Q ss_pred chhHHhhhhhhhhhccccccCCCC--CCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPP--APLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (307)
|+.+|++|+++++..++...+++. ........+ ...+.++.++.|+++||+|++.+++..... .. . ...
T Consensus 103 Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~-~~-----~--~~~ 174 (246)
T 2f2b_A 103 YIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDE-RA-----P--KGF 174 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTST-TS-----C--TTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheeeEEecCC-CC-----C--Cce
Confidence 999999999999998876665411 111111111 234678999999999999999987654211 11 1 113
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH-----hhcCccchhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL-----ARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 92 i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~-----~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
.++.+|+.++..++..+++||+|+||||++++.+ .++..|.+.|+||++|++|+++|+++++.++
T Consensus 175 ~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~ 244 (246)
T 2f2b_A 175 AGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLT 244 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999998 2356788999999999999999999988765
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.68 E-value=2.3e-16 Score=142.66 Aligned_cols=135 Identities=20% Similarity=0.172 Sum_probs=103.9
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++...+...++......+.... ...+..+.++.|+++||+|++.+++.. ...+. .. .+ ..+
T Consensus 89 Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~-~~--~~--~~p 161 (263)
T 2b6o_A 89 YVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY--DERRN-GR--LG--SVA 161 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS--CTTSC-SS--CC--CHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh--cccCC-CC--cc--cHH
Confidence 999999999999998876665432221221111 223568999999999999999887542 11111 11 11 237
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (307)
+.+|+.+++.....++.||+.+|||+++++.+..+ .|..+|+||++|++|+++|++++..++.
T Consensus 162 l~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~Wvy~vgP~~Ga~la~~~y~~l~~ 224 (263)
T 2b6o_A 162 LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTNHWVYWVGPVIGAGLGSLLYDFLLF 224 (263)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTTCTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-CccceeHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999766 7899999999999999999999988873
No 16
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.67 E-value=1.4e-16 Score=141.89 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=101.2
Q ss_pred chhHHhhhhhhhhhccccccCCCC----------CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPP----------APLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKC 84 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~ 84 (307)
|+.+|++|+++++..++...++.. ............+..+.++.|+++||+|++.++... .... .
T Consensus 87 Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~--d~~~---~ 161 (234)
T 2o9g_A 87 YVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT--DKFA---P 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHT--STTS---C
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhc--CCCC---c
Confidence 999999999999988765543211 000111111234578999999999999999887543 1111 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhh-cCccchhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 85 STVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLAR-KLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 85 ~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g-~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
. ...++.+|+.+....+..++.||+.+|||+++++.+.. +.+|..+|+||++|++|+++|+++++.++
T Consensus 162 ~----~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~ 230 (234)
T 2o9g_A 162 A----GFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 230 (234)
T ss_dssp T----TCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c----chHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHc
Confidence 1 12478899999999999999999999999999999864 44577999999999999999999998877
No 17
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.67 E-value=2e-16 Score=144.06 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=102.6
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAW 94 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~ 94 (307)
|+.+|++|+++++..++...++... .........+..+.++.|+++||+|++.++..... .. . . ....++
T Consensus 133 YiiAQ~lGA~~ga~lv~~~~~~~~~--~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~--~~--~--~--~~~~pl 202 (279)
T 2w2e_A 133 MAFTQIVAGMAAAGAASAMTPGEIA--FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVE--KH--R--A--TWFAPF 202 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCC--CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTS--CS--T--T--GGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccccce--eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccC--CC--C--C--cCcHHH
Confidence 9999999999999988776654321 11111112457889999999999999988765321 11 0 1 113478
Q ss_pred HHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 95 AFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 95 ~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
.+|+.+++..+..++.||+.+|||+++++.+..+.-+...|+||++|++|+++|++++..+.
T Consensus 203 ~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~ 264 (279)
T 2w2e_A 203 VIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998764456799999999999999999998876
No 18
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=142.97 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=101.8
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++..++...+.......+.... ...+..+.++.|+++||+|++.+++.. ...+.. . .+ ..+
T Consensus 91 Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~~-~--~~--~~p 163 (266)
T 3d9s_A 91 YVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAST--DSRRTS-P--VG--SPA 163 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH--CTTCCS-C--CC--CHH
T ss_pred HHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHh--cccCCC-c--cc--hHH
Confidence 999999999999998776654311111111111 223578899999999999999887653 111110 0 11 247
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccch-hHHHHHhhhhhHHHHhHHHHhhcc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTR-ALFYMVMQCLGAICGAGVVKGFMG 157 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~-~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (307)
+.+|+.+.+.....++.||+.+|||+++++.+..+ .|.. +|+||++|++|+++|++++..++.
T Consensus 164 l~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~ 227 (266)
T 3d9s_A 164 LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSPAHWVFWVGPIVGAVLAAILYFYLLF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCTTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-CcccCEeeeehHHHHHHHHHHHHHHHHhC
Confidence 88888888888888899999999999999999765 7888 999999999999999999988873
No 19
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.65 E-value=3.6e-16 Score=143.42 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=102.0
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++..++...++......+... ....+..+.++.|+++||+|++.+++.. ...+. ... + ..+
T Consensus 96 YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~--d~~~~-~~~--~--~~p 168 (301)
T 2zz9_A 96 YITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC--DDKRT-DVT--G--SVA 168 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHS--CSSSS-CCS--S--CHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhc--CCCCC-Ccc--c--hHh
Confidence 99999999999999887776543211111111 1234578999999999999999887542 11111 101 1 236
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (307)
+++|+.+.+.....++.||+.+|||+++++.+... .|...|+||++|++|+++|++++..++.
T Consensus 169 l~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~~WVy~vgPiiGailaa~ly~~l~~ 231 (301)
T 2zz9_A 169 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFC 231 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTTTTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcceeeeeeHHHHHHHHHHHHHHHHhC
Confidence 78888887777777789999999999999999865 7999999999999999999999988873
No 20
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.65 E-value=4.5e-16 Score=144.15 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=101.1
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++..++...++......+... ....+..+.++.|+++||+|++.++.... .... ... + ..+
T Consensus 135 YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d--~~~~-~~~--~--~~p 207 (340)
T 3iyz_A 135 YITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD--DKRT-DVT--G--SVA 207 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhc--CccC-Ccc--c--chh
Confidence 99999999999999877665543211111111 12345788999999999999998876431 1110 000 1 136
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhccc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGA 158 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (307)
+++|+.+.+.....++.||+.+|||+++++.+... .|...|+||+++++|+++|++++..++.+
T Consensus 208 l~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~~WVywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 208 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred hHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCcEeehhHHHHHHHHHHHHHHHHHhCC
Confidence 78888887777777799999999999999999765 68999999999999999999999888743
No 21
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=2.7e-16 Score=141.20 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=99.4
Q ss_pred chhHHhhhhhhhhhccccccCCCC-CC-------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPP-AP-------LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCST 86 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~ 86 (307)
|+.+|++|+++++..++...++.. .+ ..........+..+.++.|+++||+|++.+++..- ... ..
T Consensus 112 YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d--~~~---~~- 185 (256)
T 3llq_A 112 YVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTH--GRV---PA- 185 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHS--TTS---CT-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CCC---Cc-
Confidence 999999999999988765432210 00 00001112346789999999999999998765431 111 11
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHh-hcCccchhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLA-RKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 87 ~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~-g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
...++.+|+.+....+..++.||+.+|||+++++.+. |+..|...|+||++|++|+++|++++..+.
T Consensus 186 ---~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 186 ---GFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---cchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 1237889999999999999999999999999999985 445577899999999999999999988765
No 22
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.63 E-value=5.5e-16 Score=140.73 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++..++...++.+....+.... ...+..+.++.|+++||+|++.+++.. ...+.. .. ...+
T Consensus 99 Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~--d~~~~~-~~----~~~p 171 (271)
T 1j4n_A 99 YIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT--DRRRRD-LG----GSGP 171 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT--CSSCCC-CC----SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc--cccCCC-cc----ccHH
Confidence 999999999999998776654322222221111 123356788999999999999876542 111110 01 1237
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (307)
+.+|+.+.+.....++.||+.+|||+++++.+..+ +|...|+||++|++|+++|++++..++.
T Consensus 172 l~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~wv~~vgP~~Ga~la~~~y~~~~~ 234 (271)
T 1j4n_A 172 LAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDHWIFWVGPFIGAALAVLIYDFILA 234 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCcceeHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888777777789999999999999998765 6899999999999999999999988774
No 23
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=137.46 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=97.7
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPLFEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (307)
|+.+|++|+++++..++...++......+... ....+..+.++.|+++||+|++.+.... ..++. .. .+ ..+
T Consensus 87 Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~--~~~~~--~~-~~--~~p 159 (223)
T 3gd8_A 87 YIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASC--DSKRT--DV-TG--SIA 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT--CTTCS--CC-CS--CHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHh--ccccC--Cc-cC--Ccc
Confidence 99999999999998876554421110011111 1123567899999999999999876542 11111 10 11 136
Q ss_pred HHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 94 WAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 94 ~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
+.+|+.+.+.....++.||+.+|||+++++.+..+ +|.+.|+||+++++|+++|+++++.++
T Consensus 160 l~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 160 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCcEEeehhHHHHHHHHHHHHHHHHc
Confidence 77888777666666789999999999999999765 699999999999999999999988766
No 24
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.61 E-value=3.7e-16 Score=143.58 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=101.6
Q ss_pred chhHHhhhhhhhhhccccccCCCCCCC-CCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccchhHH
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPPAPL-FEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGI 92 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i 92 (307)
|+.+|++|+++++..++...++..... .+... ....+..+.++.|+++||+|++.++... ...+.... .......
T Consensus 145 YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~--d~~~~~~~-~~~~~la 221 (304)
T 3cn5_A 145 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSAT--DPKRSARD-SHVPILA 221 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTE--EEEEESTT-SCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhhee--cCccCCCC-cccccch
Confidence 999999999999998765543210000 00000 1224578999999999999999887322 11111100 0000123
Q ss_pred HHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHh--hcCccchhHHHHHhhhhhHHHHhHHHHhhccc
Q 021798 93 AWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLA--RKLSLTRALFYMVMQCLGAICGAGVVKGFMGA 158 (307)
Q Consensus 93 ~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~--g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (307)
++.+|+.+++..+..++.||+.+|||+++++.+. +...|...|+||++|++|+++|++++..++.+
T Consensus 222 pl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~ 289 (304)
T 3cn5_A 222 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCC
Confidence 7889999999999999999999999999999997 22368999999999999999999999888743
No 25
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.57 E-value=3.7e-15 Score=136.01 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=98.8
Q ss_pred chhHHhhhhhhhhhccccccCCCC-------------------CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPPP-------------------APLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVM 75 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~ 75 (307)
|+.+|++|+++++..++...++.. .....+......+.++.++.|+++||+|++.++....
T Consensus 89 Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d 168 (281)
T 1ldf_A 89 FIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTD 168 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999987654332110 0001111111235789999999999999998876531
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhh------cCccc------hhHHHHHhhhh
Q 021798 76 GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLAR------KLSLT------RALFYMVMQCL 143 (307)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g------~~~~~------~~~~yi~aQ~l 143 (307)
..+. .+ .....++.+|+.++...+..++.||+.+|||+++++.+.. +..|. .+|+||++|++
T Consensus 169 --~~~~--~~--~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~ 242 (281)
T 1ldf_A 169 --DGNG--VP--RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIV 242 (281)
T ss_dssp --TTSS--SC--CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHH
T ss_pred --cCCC--Cc--ccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHH
Confidence 1111 00 0123478999999999999999999999999999998853 12232 69999999999
Q ss_pred hHHHHhHHHHhhcc
Q 021798 144 GAICGAGVVKGFMG 157 (307)
Q Consensus 144 Ga~~ga~~~~~~~~ 157 (307)
|+++|++++..++.
T Consensus 243 Ga~la~~~y~~l~~ 256 (281)
T 1ldf_A 243 GAIVGAFAYRKLIG 256 (281)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
No 26
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.54 E-value=4.9e-15 Score=133.66 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=98.5
Q ss_pred chhHHhhhhhhhhhccccccCCC----CCCCC-CC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccc
Q 021798 15 FAERQPIGTAAQTQDGKDYVEPP----PAPLF-EP-GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG 88 (307)
Q Consensus 15 y~~aQ~~g~~~~~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~ 88 (307)
|+.+|++|+++++..++...++. ..+.. .. .-..+.+..+.++.|+++||+|++.++... ..++.. ...
T Consensus 91 Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~--d~~~~~---~~~ 165 (258)
T 3c02_A 91 YFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVV--DENICG---KFH 165 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH--CHHHHC---SCC
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHh--CcccCC---ccc
Confidence 99999999999998775443321 00100 01 111223345699999999999999887653 111100 011
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhc-----Ccc----chhHHHHHhhhhhHHHHhHHHHhhc
Q 021798 89 IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK-----LSL----TRALFYMVMQCLGAICGAGVVKGFM 156 (307)
Q Consensus 89 ~~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~-----~~~----~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (307)
.+.+++.+|+.++...+..++.||+.+|||+++++.+... ..| ...|+||++|++|+++|+++++.++
T Consensus 166 ~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~ 242 (258)
T 3c02_A 166 ILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVI 242 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHh
Confidence 1223788999999999999999999999999999998642 245 4489999999999999999998876
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=68.42 E-value=55 Score=29.00 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc-cccccccCC-
Q 021798 90 QGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLAG- 166 (307)
Q Consensus 90 ~~i~~~~g~~v~~~i~~~~~i-SG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~-~~~~~~~~~- 166 (307)
+.-++.+++.+++.+..-+.. || |--.+ ...+.+|.+|.+.+--|.-=.+|=++|++++-.+.. .......++
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTg---n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTS---TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTT---THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 334566666666666654442 33 42223 234578888877665555555555555554443320 111111000
Q ss_pred -C--ccee---cCCCCcCchhhHHHHHHHHHHHHHHHhcccc
Q 021798 167 -G--ANVV---AHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 202 (307)
Q Consensus 167 -~--~~~~---~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~ 202 (307)
+ .... .-+.+..+.|+-=++|.++.++.++.....|
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 186 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGR 186 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0001 1234556778888888999998888754433
No 28
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=47.51 E-value=2.8 Score=38.32 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.7
Q ss_pred cCCCCcccChHHHHHHHHhhc
Q 021798 108 AGISGGHINPAVTLGLFLARK 128 (307)
Q Consensus 108 ~~iSG~h~NPavTla~~~~g~ 128 (307)
+.-||||++|+++++-.+..+
T Consensus 9 ~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 445899999999999999765
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=38.98 E-value=1.7e+02 Score=25.71 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhcC-CCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc-cccccccCCC
Q 021798 90 QGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLAGG 167 (307)
Q Consensus 90 ~~i~~~~g~~v~~~i~~~~~-iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~-~~~~~~~~~~ 167 (307)
+.-++.+++.+++.+..-+. .||-.+ .++ ..+.+|.+|.+.+--|.-=.+|=++|++++-.+.. ...+.. +++
T Consensus 68 ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~-~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~-~~~ 142 (280)
T 3kly_A 68 LLGGLAFSLGLILVVITGGELFTSSVL---ILV-AKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFME-DGG 142 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTTCC---CCS-SSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGT-TTT
T ss_pred HHHHHHHHHHHHHHHHccccccccchH---HHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-Cch
Confidence 34456666666666665444 344333 222 24467888888777766666666666665544320 111111 111
Q ss_pred c-----cee---cCCCCcCchhhHHHHHHHHHHHHHHHhcccc
Q 021798 168 A-----NVV---AHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 202 (307)
Q Consensus 168 ~-----~~~---~~~~~~~~~~~~E~~~T~iL~~~il~~~~~~ 202 (307)
. ... .-+.+..+.|+-=++|.++.++.++.....|
T Consensus 143 ~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 185 (280)
T 3kly_A 143 QLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSAR 185 (280)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 001 1223556778888888899988888765433
No 30
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=34.01 E-value=1.8e+02 Score=25.32 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcc-cccccccCCC-
Q 021798 90 QGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLAGG- 167 (307)
Q Consensus 90 ~~i~~~~g~~v~~~i~~~~~iSG~h~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~-~~~~~~~~~~- 167 (307)
+.-++.+++.+...+..-+..-=+ |-.......+.++.+|.+.+--|.-=.+|=++|++++-.++. ....+....+
T Consensus 65 ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~ 142 (268)
T 3tds_E 65 IVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAE 142 (268)
T ss_dssp HHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHH
Confidence 344555555555555543221111 433233445678889888877766666666666665544431 1111000000
Q ss_pred -ccee---cCCCCcCchhhHHHHHHHHHHHHHHHhc
Q 021798 168 -ANVV---AHGYTKGDGLGAEIIGTFVLVYTVFSAT 199 (307)
Q Consensus 168 -~~~~---~~~~~~~~~~~~E~~~T~iL~~~il~~~ 199 (307)
.... .-+.+..+.|+-=++|.++..+.++...
T Consensus 143 ~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~ 178 (268)
T 3tds_E 143 FFANTAASKASMPFTALFFRGILCNILVCVSVLCSF 178 (268)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 1123456778888888898888888654
No 31
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=23.33 E-value=2e+02 Score=24.90 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccc---ChHHHHHHHHhhcCccchhHHHHHhhhhhHHHHhHHHHhhcccccccccCC
Q 021798 90 QGIAWAFGGMIFVLVYCTAGISGGHI---NPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAG 166 (307)
Q Consensus 90 ~~i~~~~g~~v~~~i~~~~~iSG~h~---NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~ 166 (307)
+.-++.+++.+...+.. |+.+ |-.......+.++.+|.+.+--|.-=.+|=++|++++-.++..........
T Consensus 59 ll~g~~F~vGl~lVvl~-----g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~ 133 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIA-----GSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPV 133 (261)
T ss_dssp HHHHHHTTHHHHHHHHT-----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSC
T ss_pred HHHHHHHHHHHHHHHHc-----CCcccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 33355555555555543 3343 433333345578888888877776666666666655444331110000000
Q ss_pred -Ccc--eec---CCCCcCchhhHHHHHHHHHHHHHHHhcc
Q 021798 167 -GAN--VVA---HGYTKGDGLGAEIIGTFVLVYTVFSATD 200 (307)
Q Consensus 167 -~~~--~~~---~~~~~~~~~~~E~~~T~iL~~~il~~~~ 200 (307)
... ... -+.+..+.|+-=++|.++..+.++....
T Consensus 134 ~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~ 173 (261)
T 4fc4_A 134 DTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIR 173 (261)
T ss_dssp TTSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 011 1234567788888888888888876543
Done!