BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021799
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog OS=Bos
taurus GN=VPS72 PE=2 SV=1
Length = 364
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEKE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--TREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGTDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLE 207
+L EA TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188
>sp|Q5R5V9|VPS72_PONAB Vacuolar protein sorting-associated protein 72 homolog OS=Pongo
abelii GN=VPS72 PE=2 SV=1
Length = 364
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--AREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLE 207
+L EA TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188
>sp|Q62481|VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog OS=Mus
musculus GN=Vps72 PE=2 SV=2
Length = 368
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPASSSQK--AREEKTLLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLE 207
+L EA TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188
>sp|Q6GNJ8|VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog OS=Xenopus
laevis GN=vps72 PE=2 SV=1
Length = 353
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIA-DEFDSDFDEDEP 75
R+ R T G RM+ LL E E+D EE D+ Y E++ + DE DSDFD D
Sbjct: 7 RAPRKTAGNRMSGLLQAEEEDDFYKTTYGGFNEESGDEEYNEDRSASEDEVDSDFDID-- 64
Query: 76 EPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKK-KILSKLDSPDKDVKSNEQSILPENH 134
E DE + ++ K+R++ TK K+ ++L + + PE
Sbjct: 65 EGDEPTSDHEEDEPKKKRRVV------TKAYKEPIQLLKPKPKKPEAPPNTAAKSRPEKP 118
Query: 135 DVPND--VEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEML 192
P D V+ + +R+ST + R + ++ K+K ++ +TQEE+L
Sbjct: 119 QEPPDDTVDSRKQMRQST------TEHTRQTFLRVKERQIQSKKKKGPHLDRPLTQEELL 172
Query: 193 LEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
EA TE +N+R+LE R E +K+ + K GP +RY S
Sbjct: 173 EEAKITEEINIRSLEN-YERLEADRKKQVHKKRRCAGPTIRYHS 215
>sp|Q15906|VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog OS=Homo
sapiens GN=VPS72 PE=1 SV=1
Length = 364
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVNTPAGSSQK--AREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLE 207
+L EA TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188
>sp|Q9VKM6|VPS72_DROME Vacuolar protein sorting-associated protein 72 homolog
OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1
Length = 351
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 132/337 (39%), Gaps = 70/337 (20%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDF---DED 73
RS R G ++ LL++E E+D + +E+E D YE++ E D DSDF + D
Sbjct: 5 RSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDEND 64
Query: 74 EPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPEN 133
EP D+E E KK+K+ + +K K E P
Sbjct: 65 EPVSDQEEAPE-------------------KKRKRGVVNTKAYKETKPAVKKETKATPAL 105
Query: 134 HDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAA----LQATMKPIK----------RKK 179
H G + ++ R V + R +IR + QAT +K +K
Sbjct: 106 H---KKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKV 162
Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
E+ TQEE+L EA TE N ++LE+ E E KK++ K ++GP +RY S
Sbjct: 163 RVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELE-KKKSRPTKRTFSGPTIRYHSLTM 221
Query: 240 YSYLEFSKGVS---------------------------FQSELSTTSVPYPERAVCAVTG 272
+ + ++G + FQS + P +C +T
Sbjct: 222 PAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITR 281
Query: 273 LPAKN---TMKRTTIATEEFILLWTMTVSNLLQIGVG 306
LPA+ ++ + + F +L L Q G G
Sbjct: 282 LPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGG 318
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris
GN=RPGR PE=2 SV=1
Length = 1003
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 36 EEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRL 95
EE +++ ++ ++ D +E+ + + +F E E D+EVE D+ +W ++
Sbjct: 716 EEPDSYLEGESESQQGTTDGFEQPESV------EFSSGEKEDDDEVE--TDQNLWYSRKF 767
Query: 96 IFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERI 145
I G K++ + ILSK + D K + S +PE + D EG I
Sbjct: 768 IEQG----HKEETEHILSKFMA-KYDFKCDHLSEIPEEQEGAEDSEGSGI 812
>sp|Q9P790|VPS72_SCHPO SWR complex protein 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=swc2 PE=1 SV=1
Length = 316
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEE----VKKRAIVHKAVYTGPQLRYLSK---- 237
MTQ++ EAA+TE NL +L + EE+ +K+ A H+ + P L+++SK
Sbjct: 178 MTQQQRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQL-REPILKFISKTIST 236
Query: 238 -DGYSYLEFSKGVSFQSELSTTSVPY--PE-RAV-CAVTGLPA 275
DG + + L ++ P P+ RAV C +TG PA
Sbjct: 237 EDGREASNYYVA-PLEHPLCHSAPPLQMPQHRAVECVITGKPA 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,040,066
Number of Sequences: 539616
Number of extensions: 5354438
Number of successful extensions: 65268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 1604
Number of HSP's that attempted gapping in prelim test: 37765
Number of HSP's gapped (non-prelim): 14219
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)