Query 021799
Match_columns 307
No_of_seqs 182 out of 268
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2897 DNA-binding protein YL 100.0 1.2E-53 2.5E-58 408.7 16.9 292 10-304 4-335 (390)
2 PF05764 YL1: YL1 nuclear prot 100.0 2.4E-48 5.1E-53 359.1 19.5 214 14-237 1-239 (240)
3 PF08265 YL1_C: YL1 nuclear pr 99.3 1.4E-12 3E-17 84.6 1.7 27 266-292 1-30 (30)
4 KOG4137 Uncharacterized conser 98.9 8.5E-10 1.8E-14 88.8 2.2 36 262-297 47-85 (102)
5 COG5195 Uncharacterized conser 98.8 2.5E-09 5.3E-14 87.4 2.1 75 222-298 20-102 (118)
6 KOG2897 DNA-binding protein YL 96.3 0.0012 2.7E-08 64.9 0.4 87 188-275 220-314 (390)
7 PF05764 YL1: YL1 nuclear prot 89.5 1.9 4.1E-05 40.3 8.3 6 241-246 232-237 (240)
8 KOG0526 Nucleosome-binding fac 89.0 0.24 5.3E-06 51.3 2.2 34 24-57 440-473 (615)
9 PF10446 DUF2457: Protein of u 88.4 0.29 6.3E-06 49.7 2.2 8 7-14 10-17 (458)
10 PF04438 zf-HIT: HIT zinc fing 88.2 0.17 3.7E-06 32.8 0.3 22 265-286 2-23 (30)
11 PF04795 PAPA-1: PAPA-1-like c 86.5 2.9 6.3E-05 33.5 6.5 26 226-251 63-88 (89)
12 KOG3064 RNA-binding nuclear pr 68.0 4.2 9E-05 39.0 2.6 6 29-34 188-193 (303)
13 PF13824 zf-Mss51: Zinc-finger 60.7 5.3 0.00011 29.6 1.4 20 267-286 1-24 (55)
14 COG3908 Uncharacterized protei 50.9 23 0.00051 27.5 3.6 21 266-286 31-56 (77)
15 TIGR00986 3a0801s05tom22 mitoc 48.2 11 0.00023 33.1 1.6 25 46-71 20-44 (145)
16 COG4225 Predicted unsaturated 43.0 5.9 0.00013 39.3 -0.9 25 276-300 170-194 (357)
17 PF05565 Sipho_Gp157: Siphovir 42.3 84 0.0018 27.5 6.3 64 189-257 63-126 (162)
18 PF04281 Tom22: Mitochondrial 41.1 18 0.00038 31.5 1.8 10 65-74 36-45 (137)
19 PF12253 CAF1A: Chromatin asse 34.8 27 0.00058 27.5 1.7 14 52-65 45-58 (77)
20 KOG0943 Predicted ubiquitin-pr 32.0 20 0.00043 41.5 0.8 17 13-29 1699-1715(3015)
21 PF02724 CDC45: CDC45-like pro 31.3 31 0.00067 36.7 2.1 14 263-276 553-566 (622)
22 KOG3241 Uncharacterized conser 29.8 26 0.00057 32.1 1.1 12 49-60 190-201 (227)
23 PF13324 GCIP: Grap2 and cycli 27.1 38 0.00082 31.9 1.7 21 23-44 124-147 (275)
24 PRK08881 rpsN 30S ribosomal pr 25.5 31 0.00068 28.3 0.8 44 254-301 50-93 (101)
25 PRK06911 rpsN 30S ribosomal pr 24.4 45 0.00098 27.4 1.5 45 253-301 48-92 (100)
26 PF03153 TFIIA: Transcription 24.4 26 0.00055 34.4 0.0 9 64-72 306-314 (375)
27 TIGR01299 synapt_SV2 synaptic 21.9 80 0.0017 34.3 3.2 33 23-57 26-59 (742)
28 PF09457 RBD-FIP: FIP domain ; 20.7 2.1E+02 0.0045 20.6 4.1 18 187-204 1-18 (48)
29 PF09866 DUF2093: Uncharacteri 20.4 36 0.00078 24.0 0.1 10 266-275 8-17 (42)
No 1
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=100.00 E-value=1.2e-53 Score=408.69 Aligned_cols=292 Identities=37% Similarity=0.471 Sum_probs=213.8
Q ss_pred CCccccccccccccchHHHHHHhhhhhhhhhhhhcccccccccccCcc-cccccccccCCCCCCCC--CCCCchhhhhhh
Q 021799 10 DAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYE-EEQEIADEFDSDFDEDE--PEPDEEVENEVD 86 (307)
Q Consensus 10 ~~~~~~~R~~RstaG~Rm~~Ll~~e~~~D~~~~~~~~f~E~e~D~~~~-~E~e~eD~~DSDFd~dE--~~~dde~e~e~~ 86 (307)
.+.|+++|++|+||||+|+.||++|+++|+++|+|+.|.++++|++|+ ++.+.+|++||||++|+ +++|++.++++.
T Consensus 4 t~~~~~~RSrRanaGnKls~LLe~E~ed~~~~t~q~s~~e~~~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~~~ 83 (390)
T KOG2897|consen 4 TEMLAAGRSRRANAGNKLSKLLESEEEDDEYSTTQGSFSEDSHDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDDKE 83 (390)
T ss_pred chhhhhccccccccchHHHHHhhhhhhhhHHhhhhccccccccchhhhhhhhhhccccccccchhhccccCccccccccc
Confidence 456899999999999999999999999999999999999999999999 56789999999999983 222332222221
Q ss_pred hhhhhhccccCCCCCcchhhhhhcccc-cCCCCCccccCcccCCCC----C-CCCCCCCcccccccchhhHHHHHHHHHH
Q 021799 87 ERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQSILP----E-NHDVPNDVEGERIIRKSTRTAVVVRQAE 160 (307)
Q Consensus 87 er~~kKKr~~~~~k~~kk~~kKkk~~~-~~~~~~~~~k~~~~~~~~----~-~~~~~~~~~~~~~~R~StR~st~~r~~e 160 (307)
+....+++++.+.+.+++++ +++. .+..-++..++.+..... . ...+.........+|+|+|+||+.+.++
T Consensus 84 ~~d~~~k~~vl~~~~rkkr~---k~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~RkS~R~St~~~t~~ 160 (390)
T KOG2897|consen 84 EEDEDAKRKVLRTKERKKRK---KALKKRAANLPAADKKPKFGGTAERSEEPNNEVQKEGKDPVHRRKSERTSTVEKTQE 160 (390)
T ss_pred ccccccccchhhhHHhhhhh---hhhcccccccccccCCCCcCCcccccccchHHHHhhccCcccccchhhhHHHhhhhh
Confidence 11122333333222222211 1111 011111111111111100 0 1223333334457899999999999888
Q ss_pred HHHHHHHHHHhccccccccccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCeEEEEec--
Q 021799 161 RDAIRAALQATMKPIKRKKEGEE-KRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSK-- 237 (307)
Q Consensus 161 ~e~~R~~~~~~~k~~~~Kk~~~~-~~lTQeElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~~GP~ir~~S~-- 237 (307)
....|.+.+...+++++|++..+ +.+||||||.||++||.+|+.||+.+.++|+.+|++++.+|+.+.||+|+|||.
T Consensus 161 ~~e~rs~~e~~~r~r~rK~~~~E~~~~TQeE~l~eAk~TE~~Nl~SLe~~~~~ee~~Kkk~~~~kr~~~~P~i~~~S~t~ 240 (390)
T KOG2897|consen 161 ETELRSKEEKDGRPRRRKKKFNEPKMGTQEERLLEAKKTEAMNLLSLEIVAAREEDDKKKAAMKKRQEKGPIITYHSLTK 240 (390)
T ss_pred HHHHhhhhhccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceeEEeecc
Confidence 77777766665666665555544 445999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------CC-c--eeeEEecCCcccccccCCCCCCC-CCcccccCCCCcCCCCCCCCcch---hHH
Q 021799 238 ---------------------DG-Y--SYLEFSKGVSFQSELSTTSVPYP-ERAVCAVTGLPAKNTMKRTTIAT---EEF 289 (307)
Q Consensus 238 ---------------------~~-~--~~i~f~~~~~~~~~~~~~~~~~p-~~~~C~iTg~pA~Y~DP~T~l~y---~~y 289 (307)
.| | ++|++.+.++|.++|+..++++| .+.+|+|||+||+|+||+||||| .+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C~iTg~PA~Y~DPVT~lPy~ta~AF 320 (390)
T KOG2897|consen 241 PAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVCVITGRPARYLDPVTGLPYSTAQAF 320 (390)
T ss_pred hhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCcccccccccCCcccccCcccCCcchhHHHH
Confidence 34 4 67888888999999999999887 89999999999999999999999 569
Q ss_pred HHHhhhcccchhhcc
Q 021799 290 ILLWTMTVSNLLQIG 304 (307)
Q Consensus 290 ~~ir~~~~~~~~~~~ 304 (307)
++||+-+--.|++++
T Consensus 321 KviRe~y~~~~~~~~ 335 (390)
T KOG2897|consen 321 KVIRERYKKHLRSIR 335 (390)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999966655555555
No 2
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.4e-48 Score=359.05 Aligned_cols=214 Identities=43% Similarity=0.569 Sum_probs=152.6
Q ss_pred ccccccccccchHHHHHHhhhhhhhhhhhhc-ccccccccccCccccccccccc--CCCCCCCCCCC---Cchhhhhh--
Q 021799 14 FLDRSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQEIADEF--DSDFDEDEPEP---DEEVENEV-- 85 (307)
Q Consensus 14 ~~~R~~RstaG~Rm~~Ll~~e~~~D~~~~~~-~~f~E~e~D~~~~~E~e~eD~~--DSDFd~dE~~~---dde~e~e~-- 85 (307)
|++|++||||||||++||++|++.|++||++ +||+||++|++|+++++++|++ |||||+|++++ +++.+++.
T Consensus 1 v~~R~rRsnaGnrm~~LL~~E~e~de~~~~~~~~f~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~~~~e~e~e~~~ 80 (240)
T PF05764_consen 1 VATRPRRSNAGNRMKKLLEEELEEDEFFWNQYGLFQEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDESDDEEEGEKEL 80 (240)
T ss_pred CCCcccccchhHHHHHHHHHHHhhhhhhhhhcccccccCCCccccCCCccccccccccccCccccCCCCCcccchhhhHH
Confidence 6899999999999999999999999999995 5599999999999887777776 99999887632 33334433
Q ss_pred --hhhhhhhccccCCCCCcchhhhhhcccc-c----CCCCCccccCcccCCCCCCCCCCCCcccccccchhhHHHHH---
Q 021799 86 --DERVWTKKRLIFPGKPLTKKKKKKKILS-K----LDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVV--- 155 (307)
Q Consensus 86 --~er~~kKKr~~~~~k~~kk~~kKkk~~~-~----~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~R~StR~st~--- 155 (307)
.++..+|++++ ++.+..+..++++..+ . ...++++++++.. ..++++... ..+|+|+|+||+
T Consensus 81 ~~~ek~~kkk~~~-~~~~~~p~~~k~k~~~~~~~~~~~~~~~~k~~~~~-----~~~~~~~~~--~~~R~S~R~st~~~~ 152 (240)
T PF05764_consen 81 RREEKLKKKKRRK-KKAYKEPAKKKKKKPPQAAKKDSAAAPKPKKKKER-----QSWAPTLLD--SPRRKSTRSSTVANK 152 (240)
T ss_pred HHHHHHHHhhhcc-cccchhhhhhcccccccccccccccCCCCcccccc-----ccCcccccc--cchhhhHHHHHHHHH
Confidence 22222333222 2333222212211111 1 1112223322222 123443222 347888888876
Q ss_pred ----HHHHHHHHHHHHHHHhccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhcccccc
Q 021799 156 ----VRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK---RAIVHKAVYT 228 (307)
Q Consensus 156 ----~r~~e~e~~R~~~~~~~k~~~~Kk~~~~~~lTQeElL~EA~~TE~~N~~SL~~~~~~EeekKk---~~~~~k~~~~ 228 (307)
.++++++.+|+.+++.| .++++....++|||+|||+||++||++|++||++|+++|+++|+ .+.++|.++.
T Consensus 153 ~~~~~rlke~e~~r~~~~~~~--~~~k~~~~~~~lTQeElL~EAk~TE~~N~~SL~~~~~~EeekKk~~~~~~~~K~~~~ 230 (240)
T PF05764_consen 153 QATYERLKEREEKRKKRQARM--KKKKKKQEERPLTQEELLEEAKETEEENLKSLNKYEELEEEKKKAQRQAQKKKKIYT 230 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 68888888888777776 35566778899999999999999999999999999999999998 6677777779
Q ss_pred CCeEEEEec
Q 021799 229 GPQLRYLSK 237 (307)
Q Consensus 229 GP~ir~~S~ 237 (307)
||+|+|||+
T Consensus 231 GP~ir~~S~ 239 (240)
T PF05764_consen 231 GPVIRYHSR 239 (240)
T ss_pred CCeEEEEeC
Confidence 999999997
No 3
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=99.27 E-value=1.4e-12 Score=84.64 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=23.7
Q ss_pred cccccCCCCcCCCCCCCCcchh---HHHHH
Q 021799 266 AVCAVTGLPAKNTMKRTTIATE---EFILL 292 (307)
Q Consensus 266 ~~C~iTg~pA~Y~DP~T~l~y~---~y~~i 292 (307)
.+|+|||+||+|+||.|||||+ +|++|
T Consensus 1 k~C~iTglpA~Y~DP~T~l~Y~n~~ayk~i 30 (30)
T PF08265_consen 1 KYCDITGLPARYRDPKTGLPYANSEAYKII 30 (30)
T ss_pred CcccccCCCccccCCCCCCcccCHHHhhcC
Confidence 4899999999999999999994 57764
No 4
>KOG4137 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.5e-10 Score=88.85 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCCcccccCCCCcCCCCCCCCcchhH---HHHHhhhcc
Q 021799 262 YPERAVCAVTGLPAKNTMKRTTIATEE---FILLWTMTV 297 (307)
Q Consensus 262 ~p~~~~C~iTg~pA~Y~DP~T~l~y~~---y~~ir~~~~ 297 (307)
.|.+.+|+||||||.|.||.|+|.||+ |++|++|+.
T Consensus 47 ~PakKycDvTGLpapYtdP~t~Lry~naeiY~~i~emps 85 (102)
T KOG4137|consen 47 KPAKKYCDVTGLPAPYTDPNTGLRYHNAEIYKLICEMPS 85 (102)
T ss_pred ccchhhccccCCcccccCCCccceeccHHHHHHHHHCCc
Confidence 567789999999999999999999954 999999984
No 5
>COG5195 Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2.5e-09 Score=87.42 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=49.6
Q ss_pred hccccccCCeEEEEecCCc-eeeEEec----CCcccccccCCCCCCCCCcccccCCCCcCCCCCCCCcchhH---HHHHh
Q 021799 222 VHKAVYTGPQLRYLSKDGY-SYLEFSK----GVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEE---FILLW 293 (307)
Q Consensus 222 ~~k~~~~GP~ir~~S~~~~-~~i~f~~----~~~~~~~~~~~~~~~p~~~~C~iTg~pA~Y~DP~T~l~y~~---y~~ir 293 (307)
.++..+.||--||.+...- +-++..+ ..++.-+-| ..-.|+..+|+||||||.|.||.|||.||+ |++|+
T Consensus 20 fk~~~Yk~~~rr~ktlrQli~~~~i~ne~sk~~Y~sieap--pSv~P~~KyCDvTGL~a~Yt~P~t~lrYhn~eiY~lI~ 97 (118)
T COG5195 20 FKKSTYKGKNRRFKTLRQLIPRLTIENESSKHRYLSIEAP--PSVKPRMKYCDVTGLPAPYTCPNTGLRYHNSEIYKLIC 97 (118)
T ss_pred ccCccccCcccchhhHHHHccccccccccccceeEeecCC--CccccccccccccCCcccccCCCcCceeccHHHHHHhh
Confidence 5677778888888775311 1112222 222221111 113577789999999999999999999965 99999
Q ss_pred hhccc
Q 021799 294 TMTVS 298 (307)
Q Consensus 294 ~~~~~ 298 (307)
+|+..
T Consensus 98 elpsg 102 (118)
T COG5195 98 ELPSG 102 (118)
T ss_pred cCCCc
Confidence 99853
No 6
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=96.27 E-value=0.0012 Score=64.92 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cCCeEEEEecCC--ceeeEEecCCccc----ccccCCC
Q 021799 188 QEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY--TGPQLRYLSKDG--YSYLEFSKGVSFQ----SELSTTS 259 (307)
Q Consensus 188 QeElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~--~GP~ir~~S~~~--~~~i~f~~~~~~~----~~~~~~~ 259 (307)
+...+..+..+..+|+.||..+..++-.+..........+ .|+.-+-.+..+ .+|....+....+ ..+|. .
T Consensus 220 k~~~~kr~~~~P~i~~~S~t~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C~-i 298 (390)
T KOG2897|consen 220 KAAMKKRQEKGPIITYHSLTKPAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVCV-I 298 (390)
T ss_pred HHHHHhhhccCCceeEEeecchhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCccccccc-c
Confidence 6667777788889999999988877777654443332222 676555555544 2343333322211 12221 1
Q ss_pred CCCCCCcccccCCCCc
Q 021799 260 VPYPERAVCAVTGLPA 275 (307)
Q Consensus 260 ~~~p~~~~C~iTg~pA 275 (307)
.-.|.+-.-+|||+|-
T Consensus 299 Tg~PA~Y~DPVT~lPy 314 (390)
T KOG2897|consen 299 TGRPARYLDPVTGLPY 314 (390)
T ss_pred cCCcccccCcccCCcc
Confidence 1356677788999995
No 7
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.51 E-value=1.9 Score=40.35 Aligned_cols=6 Identities=0% Similarity=0.412 Sum_probs=3.5
Q ss_pred eeeEEe
Q 021799 241 SYLEFS 246 (307)
Q Consensus 241 ~~i~f~ 246 (307)
++|.|.
T Consensus 232 P~ir~~ 237 (240)
T PF05764_consen 232 PVIRYH 237 (240)
T ss_pred CeEEEE
Confidence 566654
No 8
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=89.01 E-value=0.24 Score=51.28 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=14.9
Q ss_pred chHHHHHHhhhhhhhhhhhhcccccccccccCcc
Q 021799 24 GKRMNKLLDDENEEDEAFWNQDALKEEENDDNYE 57 (307)
Q Consensus 24 G~Rm~~Ll~~e~~~D~~~~~~~~f~E~e~D~~~~ 57 (307)
--.++.|+++..++++.--+...=..++.|++|.
T Consensus 440 D~~~~~~~~e~~~~edd~~d~~~de~~e~Dedf~ 473 (615)
T KOG0526|consen 440 DEYLATLKAEDRDEEDDSDDSSTDEDEEEDEDFK 473 (615)
T ss_pred chHHhhhccccchhhhcccccccccchhhhhhcc
Confidence 3456666665443332211122211234466666
No 9
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=88.44 E-value=0.29 Score=49.66 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=4.3
Q ss_pred CCCCCccc
Q 021799 7 SKEDAPVF 14 (307)
Q Consensus 7 ~~e~~~~~ 14 (307)
.+++.||-
T Consensus 10 ~e~ddWi~ 17 (458)
T PF10446_consen 10 PEEDDWIR 17 (458)
T ss_pred cchhhhhh
Confidence 34556764
No 10
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=88.24 E-value=0.17 Score=32.78 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=16.9
Q ss_pred CcccccCCCCcCCCCCCCCcch
Q 021799 265 RAVCAVTGLPAKNTMKRTTIAT 286 (307)
Q Consensus 265 ~~~C~iTg~pA~Y~DP~T~l~y 286 (307)
..+|.|=|.+++|+.|..+++|
T Consensus 2 ~~~C~vC~~~~kY~Cp~C~~~~ 23 (30)
T PF04438_consen 2 RKLCSVCGNPAKYRCPRCGARY 23 (30)
T ss_dssp -EEETSSSSEESEE-TTT--EE
T ss_pred cCCCccCcCCCEEECCCcCCce
Confidence 4689999999999999999999
No 11
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=86.48 E-value=2.9 Score=33.50 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=21.6
Q ss_pred cccCCeEEEEecCCceeeEEecCCcc
Q 021799 226 VYTGPQLRYLSKDGYSYLEFSKGVSF 251 (307)
Q Consensus 226 ~~~GP~ir~~S~~~~~~i~f~~~~~~ 251 (307)
...-|+|||+|+..+++|+|..+..|
T Consensus 63 ~~~~~~IR~v~~~~G~~vs~P~~~~~ 88 (89)
T PF04795_consen 63 KPNPPMIRWVSNKNGSRVSVPEEMGL 88 (89)
T ss_pred CCCCCEEEEEECCCceEEEecCCCCC
Confidence 34779999999999999999887554
No 12
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=68.04 E-value=4.2 Score=39.02 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.5
Q ss_pred HHHhhh
Q 021799 29 KLLDDE 34 (307)
Q Consensus 29 ~Ll~~e 34 (307)
++|++.
T Consensus 188 K~l~~~ 193 (303)
T KOG3064|consen 188 KALEAR 193 (303)
T ss_pred HHHHhh
Confidence 444433
No 13
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=60.69 E-value=5.3 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.7
Q ss_pred ccccCCC----CcCCCCCCCCcch
Q 021799 267 VCAVTGL----PAKNTMKRTTIAT 286 (307)
Q Consensus 267 ~C~iTg~----pA~Y~DP~T~l~y 286 (307)
+|+|++. .-.|..|..||||
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipt 24 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPT 24 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcC
Confidence 5999999 9999999999998
No 14
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.87 E-value=23 Score=27.51 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=15.4
Q ss_pred cccccCCCCc-----CCCCCCCCcch
Q 021799 266 AVCAVTGLPA-----KNTMKRTTIAT 286 (307)
Q Consensus 266 ~~C~iTg~pA-----~Y~DP~T~l~y 286 (307)
-+|+|||.|- ||-.+.-+-||
T Consensus 31 V~CAVtgk~IPldeLrYWSvarQEaY 56 (77)
T COG3908 31 VLCAVTGKPIPLDELRYWSVARQEAY 56 (77)
T ss_pred EEEEecCCcccHHHhhhcchhhhhcc
Confidence 5899999985 46666666666
No 15
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=48.23 E-value=11 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=13.1
Q ss_pred cccccccccCcccccccccccCCCCC
Q 021799 46 ALKEEENDDNYEEEQEIADEFDSDFD 71 (307)
Q Consensus 46 ~f~E~e~D~~~~~E~e~eD~~DSDFd 71 (307)
++..+++|++|.+. +.++.+||||+
T Consensus 20 ~~~~~~~~~~~td~-~se~~~d~~~~ 44 (145)
T TIGR00986 20 VVEPEEDDEDFTDV-DSEDSVDSDFE 44 (145)
T ss_pred cccccccccccccc-ccccccccccc
Confidence 44555566667643 23333555553
No 16
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=43.01 E-value=5.9 Score=39.33 Aligned_cols=25 Identities=16% Similarity=-0.178 Sum_probs=21.9
Q ss_pred CCCCCCCCcchhHHHHHhhhcccch
Q 021799 276 KNTMKRTTIATEEFILLWTMTVSNL 300 (307)
Q Consensus 276 ~Y~DP~T~l~y~~y~~ir~~~~~~~ 300 (307)
--+||.|||-||.|..-.+|||.+-
T Consensus 170 ~l~Dp~TGL~YH~wd~~~~~~w~~~ 194 (357)
T COG4225 170 YLRDPETGLYYHGWDEDGTMPWANN 194 (357)
T ss_pred HccCCCcCceEEeeccCCCCccccc
Confidence 3479999999999999999999764
No 17
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=42.29 E-value=84 Score=27.52 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCeEEEEecCCceeeEEecCCcccccccC
Q 021799 189 EEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELST 257 (307)
Q Consensus 189 eElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~~GP~ir~~S~~~~~~i~f~~~~~~~~~~~~ 257 (307)
..+|++-+..-.-++.+|..|+... .......++.||...+.-+.+.+-+.+.|...+|..|..
T Consensus 63 ~krL~~rkk~~e~~~~~Lk~yL~~~-----m~~~g~~ki~t~~~tisirk~~~sv~I~de~~iP~~y~~ 126 (162)
T PF05565_consen 63 IKRLQERKKSIENRIDRLKEYLLDA-----MEAAGIKKIKTPLFTISIRKNPPSVEIDDEEKIPDEYIK 126 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCceeecCceEEEEecCCCCeEeeChHHCCHHHhh
Confidence 3455555556666777888887432 233466778888888777766556666666666666653
No 18
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=41.09 E-value=18 Score=31.47 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=4.7
Q ss_pred ccCCCCCCCC
Q 021799 65 EFDSDFDEDE 74 (307)
Q Consensus 65 ~~DSDFd~dE 74 (307)
+.||||++|+
T Consensus 36 d~~sd~~dd~ 45 (137)
T PF04281_consen 36 DTDSDISDDS 45 (137)
T ss_pred cccccccccc
Confidence 3455554433
No 19
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=34.77 E-value=27 Score=27.51 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=6.4
Q ss_pred cccCcccccccccc
Q 021799 52 NDDNYEEEQEIADE 65 (307)
Q Consensus 52 ~D~~~~~E~e~eD~ 65 (307)
.|++++.+++.+|+
T Consensus 45 Sd~EWeE~e~GEdl 58 (77)
T PF12253_consen 45 SDDEWEEEEEGEDL 58 (77)
T ss_pred CccccccCCCCccc
Confidence 34555433444444
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=32.01 E-value=20 Score=41.51 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=9.8
Q ss_pred cccccccccccchHHHH
Q 021799 13 VFLDRSSRVTRGKRMNK 29 (307)
Q Consensus 13 ~~~~R~~RstaG~Rm~~ 29 (307)
|-+-|.||---||--+-
T Consensus 1699 iptprrrrllsgnttnd 1715 (3015)
T KOG0943|consen 1699 IPTPRRRRLLSGNTTND 1715 (3015)
T ss_pred CCCchhhhhccCCccCc
Confidence 44566666666665443
No 21
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=31.26 E-value=31 Score=36.70 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=9.6
Q ss_pred CCCcccccCCCCcC
Q 021799 263 PERAVCAVTGLPAK 276 (307)
Q Consensus 263 p~~~~C~iTg~pA~ 276 (307)
.....|.|.|..++
T Consensus 553 ~~~~~~lVvGv~~~ 566 (622)
T PF02724_consen 553 EERGTYLVVGVSAP 566 (622)
T ss_pred CCCCeEEEEEeccC
Confidence 34578888899444
No 22
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.80 E-value=26 Score=32.09 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=5.5
Q ss_pred ccccccCccccc
Q 021799 49 EEENDDNYEEEQ 60 (307)
Q Consensus 49 E~e~D~~~~~E~ 60 (307)
+++.|++|..++
T Consensus 190 de~~DDd~d~d~ 201 (227)
T KOG3241|consen 190 DEAHDDDSDPDS 201 (227)
T ss_pred ccccccccCCcc
Confidence 344444555443
No 23
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=27.07 E-value=38 Score=31.95 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=9.0
Q ss_pred cchHHHH---HHhhhhhhhhhhhhc
Q 021799 23 RGKRMNK---LLDDENEEDEAFWNQ 44 (307)
Q Consensus 23 aG~Rm~~---Ll~~e~~~D~~~~~~ 44 (307)
.+.+|.+ |+.... ++..-|..
T Consensus 124 v~~~~~~~~~lvkDa~-~El~E~~~ 147 (275)
T PF13324_consen 124 VLRRLKQSRDLVKDAL-EELEEWDE 147 (275)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 3455543 444433 23344543
No 24
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=25.46 E-value=31 Score=28.27 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=23.4
Q ss_pred cccCCCCCCCCCcccccCCCCcCCCCCCCCcchhHHHHHhhhcccchh
Q 021799 254 ELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLL 301 (307)
Q Consensus 254 ~~~~~~~~~p~~~~C~iTg~pA~Y~DP~T~l~y~~y~~ir~~~~~~~~ 301 (307)
.+|+.+.+.-.+..|.+||.|.-|.- .-||.=+ .+|+|.-.++|
T Consensus 50 ~lPr~ss~tRi~NRC~~TGR~Rgv~r-~F~LsRi---~fRela~~G~l 93 (101)
T PRK08881 50 KLPRNSSPTRLRNRCELTGRPRGYYR-KFGLSRI---KLRELAHRGEI 93 (101)
T ss_pred hCCcccchHHHhccccCCCCCCcccc-CcCchHH---HHHHHHHcCCC
Confidence 34444334344679999999955441 1133322 34555555544
No 25
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=24.44 E-value=45 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=24.9
Q ss_pred ccccCCCCCCCCCcccccCCCCcCCCCCCCCcchhHHHHHhhhcccchh
Q 021799 253 SELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLL 301 (307)
Q Consensus 253 ~~~~~~~~~~p~~~~C~iTg~pA~Y~DP~T~l~y~~y~~ir~~~~~~~~ 301 (307)
..+|+.+.+.-.+..|.+||.|.-|.= .-||.=. .||+|.-.++|
T Consensus 48 ~~lPrnss~~R~rNRC~~TGR~Rgv~r-~FgLsRi---~~Rela~~G~l 92 (100)
T PRK06911 48 AKLPVNSNPVRYVTRCKQCGRPHAVYR-KFNLCRI---CLRQQLMVGNI 92 (100)
T ss_pred HhCCCccCcchhhcccCCCCCCccccc-ccCchHH---HHHHHHHcCCC
Confidence 345554444455679999999965541 1133212 34566655554
No 26
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=24.35 E-value=26 Score=34.39 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=0.0
Q ss_pred cccCCCCCC
Q 021799 64 DEFDSDFDE 72 (307)
Q Consensus 64 D~~DSDFd~ 72 (307)
+..+||-|+
T Consensus 306 ~~~~~~~~~ 314 (375)
T PF03153_consen 306 DAINSDLDD 314 (375)
T ss_dssp ---------
T ss_pred ccccCCcCC
Confidence 334444443
No 27
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.86 E-value=80 Score=34.33 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=21.0
Q ss_pred cchHHHHHHhhhhhhhhhh-hhcccccccccccCcc
Q 021799 23 RGKRMNKLLDDENEEDEAF-WNQDALKEEENDDNYE 57 (307)
Q Consensus 23 aG~Rm~~Ll~~e~~~D~~~-~~~~~f~E~e~D~~~~ 57 (307)
++++..+.++... |++- -+|.-|+|++||++|-
T Consensus 26 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 59 (742)
T TIGR01299 26 AAKKVNKALDRAQ--DEYSQRSYSRFEDEDDDDDFP 59 (742)
T ss_pred HHHHHHHHHHHhh--HHHhhhhHhhhcccccccCCC
Confidence 4556666665432 3322 2378899998899984
No 28
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=20.71 E-value=2.1e+02 Score=20.58 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 021799 187 TQEEMLLEAAQTEIMNLR 204 (307)
Q Consensus 187 TQeElL~EA~~TE~~N~~ 204 (307)
|++||+.+....|..|.+
T Consensus 1 s~eeL~~~l~~~e~~~~~ 18 (48)
T PF09457_consen 1 SREELISLLKKQEEENAR 18 (48)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 789999999999999877
No 29
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.43 E-value=36 Score=23.95 Aligned_cols=10 Identities=60% Similarity=0.989 Sum_probs=8.4
Q ss_pred cccccCCCCc
Q 021799 266 AVCAVTGLPA 275 (307)
Q Consensus 266 ~~C~iTg~pA 275 (307)
-+|+|||.+=
T Consensus 8 V~CAVTg~~I 17 (42)
T PF09866_consen 8 VRCAVTGQPI 17 (42)
T ss_pred EEEEeeCCcc
Confidence 4799999974
Done!