Query 021799
Match_columns 307
No_of_seqs 182 out of 268
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fp9_B Mterf domain-containing 56.3 3.8 0.00013 38.8 1.5 11 26-36 269-279 (335)
2 2l92_A Histone family protein 50.0 5.1 0.00018 28.1 0.9 13 272-284 2-14 (50)
3 1x4s_A Protein FON, zinc finge 42.8 8.4 0.00029 27.9 1.1 28 264-291 10-44 (59)
4 2yqq_A Zinc finger HIT domain- 42.7 14 0.00047 26.4 2.2 29 266-294 13-44 (56)
5 2lev_A LER; transcription regu 26.3 15 0.0005 26.4 0.1 17 270-286 10-26 (57)
6 2jr1_A Virulence regulator; H- 25.7 25 0.00085 26.8 1.3 16 271-286 28-43 (79)
7 3a1q_C Ubiquitin interaction m 24.0 1.7E+02 0.0058 19.7 5.8 32 185-216 3-34 (45)
8 2rr9_C Putative uncharacterize 23.4 1.7E+02 0.006 19.7 5.2 31 186-216 1-31 (46)
9 2ayu_A Nucleosome assembly pro 18.1 15 0.0005 36.0 -1.8 41 47-87 360-400 (417)
10 2d7c_C RAB11 family-interactin 18.0 1.6E+02 0.0055 19.7 3.9 23 187-210 2-24 (42)
No 1
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=56.35 E-value=3.8 Score=38.77 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=5.6
Q ss_pred HHHHHHhhhhh
Q 021799 26 RMNKLLDDENE 36 (307)
Q Consensus 26 Rm~~Ll~~e~~ 36 (307)
...+||+.|++
T Consensus 269 ~F~k~~~~e~~ 279 (335)
T 4fp9_B 269 VFKKLLAREEE 279 (335)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 34456655543
No 2
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=49.98 E-value=5.1 Score=28.12 Aligned_cols=13 Identities=15% Similarity=-0.143 Sum_probs=11.0
Q ss_pred CCCcCCCCCCCCc
Q 021799 272 GLPAKNTMKRTTI 284 (307)
Q Consensus 272 g~pA~Y~DP~T~l 284 (307)
..|+||+||.||.
T Consensus 2 ~~~aKYR~p~~G~ 14 (50)
T 2l92_A 2 STVPKYRDPATGK 14 (50)
T ss_dssp CCCCCEECTTTCC
T ss_pred CCCCeeccCCCCC
Confidence 4689999999984
No 3
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=42.81 E-value=8.4 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCcccccCC----CCcCCCCCCCCcch---hHHHH
Q 021799 264 ERAVCAVTG----LPAKNTMKRTTIAT---EEFIL 291 (307)
Q Consensus 264 ~~~~C~iTg----~pA~Y~DP~T~l~y---~~y~~ 291 (307)
...+|.|=+ .+|+|+.|.=+++| ..|+.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~ 44 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRT 44 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCCccChHHHHH
Confidence 346899887 59999999999999 56774
No 4
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.69 E-value=14 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=24.6
Q ss_pred cccccCCCCcCCCCCCCCcch---hHHHHHhh
Q 021799 266 AVCAVTGLPAKNTMKRTTIAT---EEFILLWT 294 (307)
Q Consensus 266 ~~C~iTg~pA~Y~DP~T~l~y---~~y~~ir~ 294 (307)
.+|.|=|.+++|+.|.=+++| ..|+.-+.
T Consensus 13 ~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk~ 44 (56)
T 2yqq_A 13 VVCVICLEKPKYRCPACRVPYCSVVCFRKHKE 44 (56)
T ss_dssp CCCTTTCSCCSEECTTTCCEESSHHHHHHHHH
T ss_pred CccCcCcCCCeeeCCCCCCCeeCHHHHHHHHh
Confidence 478988889999999999999 56876654
No 5
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=26.27 E-value=15 Score=26.42 Aligned_cols=17 Identities=0% Similarity=-0.312 Sum_probs=12.8
Q ss_pred cCCCCcCCCCCCCCcch
Q 021799 270 VTGLPAKNTMKRTTIAT 286 (307)
Q Consensus 270 iTg~pA~Y~DP~T~l~y 286 (307)
-+..|+||+||.|+...
T Consensus 10 ~~~~~aKYr~p~~g~TW 26 (57)
T 2lev_A 10 GNSSKGVYYRNEEGQTW 26 (57)
T ss_dssp SCCSSCEEEECTTCCEE
T ss_pred CCCCCCeeecCCCCCee
Confidence 35578999999886543
No 6
>2jr1_A Virulence regulator; H-NS, DNA biding protein, DNA binding PR; NMR {Xylella fastidiosa}
Probab=25.70 E-value=25 Score=26.81 Aligned_cols=16 Identities=13% Similarity=0.053 Sum_probs=12.3
Q ss_pred CCCCcCCCCCCCCcch
Q 021799 271 TGLPAKNTMKRTTIAT 286 (307)
Q Consensus 271 Tg~pA~Y~DP~T~l~y 286 (307)
...|++|+||.||...
T Consensus 28 ~~~~~KYr~p~~g~TW 43 (79)
T 2jr1_A 28 REAPIKYWLPHSGATW 43 (79)
T ss_dssp EECCCTTTCSSSCEEE
T ss_pred CCCCCcccCCCCCCcc
Confidence 3458999999998653
No 7
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=23.98 E-value=1.7e+02 Score=19.66 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021799 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEV 216 (307)
Q Consensus 185 ~lTQeElL~EA~~TE~~N~~SL~~~~~~Eeek 216 (307)
-||.||.|+-|...=..-..+.+.-++.|++-
T Consensus 3 ~mtEEEq~ALA~rmSeQEA~~vn~~eE~Edel 34 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEAREVNNQEEKEEEL 34 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 58999999999988777778888766666554
No 8
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=23.44 E-value=1.7e+02 Score=19.66 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021799 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEEV 216 (307)
Q Consensus 186 lTQeElL~EA~~TE~~N~~SL~~~~~~Eeek 216 (307)
||.||.|+-|...=..-..+.+.-++.|++-
T Consensus 1 MtEEEq~ALA~kmSeQEA~~vn~~eE~E~~l 31 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEAREVNSQEEEEEEL 31 (46)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 7889999999987777777887766555544
No 9
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=18.12 E-value=15 Score=36.01 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=0.0
Q ss_pred ccccccccCcccccccccccCCCCCCCCCCCCchhhhhhhh
Q 021799 47 LKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDE 87 (307)
Q Consensus 47 f~E~e~D~~~~~E~e~eD~~DSDFd~dE~~~dde~e~e~~e 87 (307)
|..+..|.++++.+++++..+.||++++++.|++++.+..+
T Consensus 360 ftGea~~~e~ed~~~~~~~~~~~~~de~~~~~~~~~~~~~~ 400 (417)
T 2ayu_A 360 FTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEE 400 (417)
T ss_dssp HHSHHHHHHHC------------------------------
T ss_pred hcccccccccccccccccccccccccccccccccccccccc
No 10
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=17.96 E-value=1.6e+02 Score=19.66 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 021799 187 TQEEMLLEAAQTEIMNLRNLERVL 210 (307)
Q Consensus 187 TQeElL~EA~~TE~~N~~SL~~~~ 210 (307)
|++||+....+-|..| +-|+.|.
T Consensus 2 S~~eL~~~l~~qee~n-~~Le~YI 24 (42)
T 2d7c_C 2 SRDELMEAIQKQEEIN-FRLQDYI 24 (42)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHH
Done!